Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009100.t1 | XP_013445984.1 | 96.9 | 384 | 12 | 0 | 1 | 384 | 1 | 384 | 6.40E-201 | 709.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009100.t1 | Q9ZUC1 | 79.5 | 336 | 66 | 1 | 52 | 384 | 51 | 386 | 1.1e-148 | 527.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009100.t1 | A0A072TS46 | 96.9 | 384 | 12 | 0 | 1 | 384 | 1 | 384 | 4.6e-201 | 709.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066288 | MS.gene009100 | PPI |
| MS.gene99026 | MS.gene009100 | PPI |
| MS.gene009100 | MS.gene49595 | PPI |
| MS.gene032779 | MS.gene009100 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009100.t1 | MTR_8g064610 | 96.875 | 384 | 12 | 0 | 1 | 384 | 1 | 384 | 0.0 | 745 |
| MS.gene009100.t1 | MTR_7g034395 | 72.903 | 310 | 83 | 1 | 76 | 384 | 8 | 317 | 5.74e-147 | 419 |
| MS.gene009100.t1 | MTR_6g012170 | 69.108 | 314 | 96 | 1 | 72 | 384 | 7 | 320 | 2.00e-143 | 410 |
| MS.gene009100.t1 | MTR_6g012160 | 68.990 | 287 | 88 | 1 | 72 | 357 | 7 | 293 | 3.05e-127 | 369 |
| MS.gene009100.t1 | MTR_8g035630 | 47.267 | 311 | 157 | 5 | 77 | 383 | 5 | 312 | 6.13e-87 | 267 |
| MS.gene009100.t1 | MTR_8g035880 | 47.712 | 306 | 155 | 4 | 77 | 380 | 5 | 307 | 5.13e-86 | 265 |
| MS.gene009100.t1 | MTR_6g012140 | 59.701 | 134 | 54 | 0 | 243 | 376 | 3 | 136 | 1.35e-52 | 172 |
| MS.gene009100.t1 | MTR_4g033205 | 36.842 | 342 | 163 | 13 | 76 | 382 | 6 | 329 | 1.67e-41 | 149 |
| MS.gene009100.t1 | MTR_4g032995 | 36.842 | 342 | 163 | 13 | 76 | 382 | 6 | 329 | 2.41e-41 | 148 |
| MS.gene009100.t1 | MTR_4g036310 | 35.015 | 337 | 172 | 9 | 76 | 380 | 6 | 327 | 2.34e-38 | 140 |
| MS.gene009100.t1 | MTR_1319s0010 | 67.391 | 92 | 30 | 0 | 137 | 228 | 3 | 94 | 1.90e-37 | 131 |
| MS.gene009100.t1 | MTR_7g055743 | 30.649 | 385 | 200 | 12 | 43 | 379 | 1 | 366 | 7.88e-32 | 124 |
| MS.gene009100.t1 | MTR_4g036260 | 36.364 | 275 | 139 | 7 | 134 | 382 | 44 | 308 | 9.69e-32 | 122 |
| MS.gene009100.t1 | MTR_2g012420 | 30.473 | 338 | 187 | 13 | 76 | 380 | 1 | 323 | 1.02e-27 | 111 |
| MS.gene009100.t1 | MTR_2g078520 | 30.233 | 344 | 194 | 9 | 74 | 380 | 24 | 358 | 1.45e-27 | 112 |
| MS.gene009100.t1 | MTR_4g050760 | 30.178 | 338 | 188 | 13 | 76 | 380 | 1 | 323 | 9.62e-26 | 106 |
| MS.gene009100.t1 | MTR_2g012380 | 30.178 | 338 | 188 | 13 | 76 | 380 | 1 | 323 | 9.62e-26 | 106 |
| MS.gene009100.t1 | MTR_6g012100 | 66.102 | 59 | 20 | 0 | 326 | 384 | 11 | 69 | 1.63e-22 | 90.5 |
| MS.gene009100.t1 | MTR_2g012380 | 33.913 | 230 | 131 | 8 | 76 | 297 | 1 | 217 | 2.76e-21 | 92.8 |
| MS.gene009100.t1 | MTR_4g086410 | 29.063 | 320 | 174 | 10 | 101 | 380 | 314 | 620 | 1.74e-20 | 93.6 |
| MS.gene009100.t1 | MTR_4g086400 | 28.438 | 320 | 176 | 10 | 101 | 380 | 174 | 480 | 2.18e-20 | 92.8 |
| MS.gene009100.t1 | MTR_4g086400 | 28.438 | 320 | 176 | 10 | 101 | 380 | 314 | 620 | 2.80e-20 | 93.2 |
| MS.gene009100.t1 | MTR_4g036170 | 31.136 | 273 | 146 | 8 | 134 | 380 | 46 | 302 | 1.16e-18 | 85.9 |
| MS.gene009100.t1 | MTR_4g029500 | 28.926 | 363 | 207 | 15 | 54 | 382 | 29 | 374 | 1.93e-17 | 83.6 |
| MS.gene009100.t1 | MTR_6g039950 | 52.308 | 65 | 30 | 1 | 72 | 135 | 15 | 79 | 1.61e-16 | 74.3 |
| MS.gene009100.t1 | MTR_3g093620 | 28.479 | 309 | 174 | 10 | 106 | 380 | 40 | 335 | 4.17e-13 | 70.1 |
| MS.gene009100.t1 | MTR_2g012420 | 28.796 | 191 | 100 | 8 | 222 | 380 | 5 | 191 | 7.92e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009100.t1 | AT1G23740 | 82.428 | 313 | 55 | 0 | 72 | 384 | 74 | 386 | 0.0 | 534 |
| MS.gene009100.t1 | AT4G13010 | 34.808 | 339 | 174 | 10 | 76 | 382 | 6 | 329 | 2.13e-35 | 132 |
| MS.gene009100.t1 | AT3G15090 | 33.603 | 247 | 151 | 7 | 77 | 317 | 33 | 272 | 5.99e-28 | 113 |
| MS.gene009100.t1 | AT4G21580 | 30.564 | 337 | 188 | 12 | 76 | 380 | 1 | 323 | 3.22e-26 | 107 |
| MS.gene009100.t1 | AT4G21580 | 30.564 | 337 | 182 | 13 | 76 | 380 | 1 | 317 | 5.28e-25 | 104 |
| MS.gene009100.t1 | AT3G56460 | 29.560 | 318 | 176 | 11 | 98 | 380 | 32 | 336 | 2.41e-20 | 91.7 |
| MS.gene009100.t1 | AT1G49670 | 27.476 | 313 | 178 | 9 | 104 | 380 | 317 | 616 | 1.22e-18 | 88.2 |
| MS.gene009100.t1 | AT5G61510 | 28.726 | 369 | 215 | 14 | 44 | 382 | 56 | 406 | 4.60e-18 | 85.5 |
| MS.gene009100.t1 | AT1G49670 | 25.749 | 334 | 180 | 8 | 104 | 380 | 317 | 639 | 1.93e-17 | 84.7 |
| MS.gene009100.t1 | AT3G45770 | 28.395 | 324 | 196 | 11 | 46 | 348 | 16 | 324 | 4.52e-17 | 82.4 |
| MS.gene009100.t1 | AT5G61510 | 28.395 | 324 | 188 | 13 | 89 | 382 | 40 | 349 | 3.40e-14 | 73.6 |
Find 88 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTCCACTCTCTAAATA+TGG | 0.138626 | 8.1:+39027487 | None:intergenic |
| GGCACTAAAACCTACAAATT+TGG | 0.155938 | 8.1:-39028457 | MS.gene009100:CDS |
| GGACCTTTGGGATCTATAAT+TGG | 0.222062 | 8.1:+39027460 | None:intergenic |
| GCCTAAACAATTTGGATCTT+TGG | 0.225742 | 8.1:-39028511 | MS.gene009100:CDS |
| AAGAAGGCAGGGAAAGTTTA+AGG | 0.274790 | 8.1:-39029252 | MS.gene009100:CDS |
| ATTCTTGTTCTCAATGGTTC+TGG | 0.283840 | 8.1:-39028348 | MS.gene009100:CDS |
| TTAGATGGGCCTAAACAATT+TGG | 0.285649 | 8.1:-39028519 | MS.gene009100:CDS |
| GCTTGGGTGTATGGAGAATA+TGG | 0.307432 | 8.1:-39029383 | MS.gene009100:CDS |
| GAAAAGTCTTGGAGCTGATT+TGG | 0.309843 | 8.1:-39027928 | MS.gene009100:CDS |
| GTTCCTGGCTATGATGTTGC+TGG | 0.312264 | 8.1:-39028621 | MS.gene009100:CDS |
| ATCAAGGCATGCTAGATTCT+TGG | 0.312339 | 8.1:-39029474 | MS.gene009100:CDS |
| AAGGAAAATCTCAGAGAAAA+TGG | 0.314959 | 8.1:+39029554 | None:intergenic |
| TGTGTCCATTAGACTGTTCC+TGG | 0.323261 | 8.1:-39028636 | MS.gene009100:intron |
| AGTTGGAAGCCTAGTGATTC+AGG | 0.332144 | 8.1:-39028322 | MS.gene009100:intron |
| TGAGACTGCTTATGAAGGTT+TGG | 0.356657 | 8.1:-39028400 | MS.gene009100:CDS |
| GGCTACGGATTCTCCGCTTC+CGG | 0.367463 | 8.1:-39029231 | MS.gene009100:intron |
| CACTTCAAGCACTAGACATT+TGG | 0.377637 | 8.1:-39027958 | MS.gene009100:CDS |
| CAGAGCAGTGAAGGCAATAA+AGG | 0.383379 | 8.1:-39027605 | MS.gene009100:CDS |
| AGCAAAAGAGAATGGACCTT+TGG | 0.385814 | 8.1:+39027447 | None:intergenic |
| CCTTTCCACTCTCTAAATAT+GGG | 0.387466 | 8.1:+39027488 | None:intergenic |
| AAATCTATTCTTGTTCTCAA+TGG | 0.403553 | 8.1:-39028354 | MS.gene009100:CDS |
| TGAGCAAAGTCCAAATTTGT+AGG | 0.412003 | 8.1:+39028447 | None:intergenic |
| GCCAAAGATCCAAATTGTTT+AGG | 0.420332 | 8.1:+39028510 | None:intergenic |
| GTGAATGAGAAAGCATTAGA+TGG | 0.420736 | 8.1:-39028534 | MS.gene009100:CDS |
| GAAATGAAGGCTTGGGTGTA+TGG | 0.426528 | 8.1:-39029392 | MS.gene009100:CDS |
| GGCAGTGTAGTAGCACTAAC+AGG | 0.429167 | 8.1:-39027577 | MS.gene009100:CDS |
| GCAAAAGAGAATGGACCTTT+GGG | 0.433468 | 8.1:+39027448 | None:intergenic |
| TTCCTGGCTATGATGTTGCT+GGG | 0.439986 | 8.1:-39028620 | MS.gene009100:CDS |
| ACCTGATGTTAAGGAAGATC+AGG | 0.457278 | 8.1:-39029321 | MS.gene009100:CDS |
| ATTGAAACAAACAAAGCTAC+TGG | 0.463741 | 8.1:-39027400 | MS.gene009100:CDS |
| AGAGAAAATGGTGAAGTTGA+AGG | 0.463923 | 8.1:+39029566 | None:intergenic |
| TGCCTTCTGAAATGAAGGCT+TGG | 0.464849 | 8.1:-39029400 | MS.gene009100:CDS |
| CTCAATGGTTCTGGTGGAGT+TGG | 0.465977 | 8.1:-39028339 | MS.gene009100:CDS |
| GCCTTCTGAAATGAAGGCTT+GGG | 0.468733 | 8.1:-39029399 | MS.gene009100:CDS |
| GCTGCTCTTAACCCTGTTGA+TGG | 0.476989 | 8.1:-39029278 | MS.gene009100:CDS |
| TGAAGGAAGTGAAGGAAGAA+TGG | 0.477949 | 8.1:+39029583 | None:intergenic |
| GCTATTGAGACTGCTTATGA+AGG | 0.483022 | 8.1:-39028405 | MS.gene009100:CDS |
| ACCTGATCTTCCTTAACATC+AGG | 0.484347 | 8.1:+39029320 | None:intergenic |
| CTTGTTCTCAATGGTTCTGG+TGG | 0.485138 | 8.1:-39028345 | MS.gene009100:CDS |
| TTTCTTCAGAACAGCTCCAT+TGG | 0.486934 | 8.1:+39027516 | None:intergenic |
| GCAACCTGAGCAAAAGAGAA+TGG | 0.487160 | 8.1:+39027439 | None:intergenic |
| TGTTGCTGTACCTGATGTTA+AGG | 0.491842 | 8.1:-39029330 | MS.gene009100:CDS |
| TTGGAGCTACTGAAAAGTCT+TGG | 0.497793 | 8.1:-39027939 | MS.gene009100:CDS |
| CACTCTTGTCTTCTTCATCA+AGG | 0.501112 | 8.1:-39029490 | MS.gene009100:CDS |
| TATGAAGGTTTGGAGAGGAC+TGG | 0.503871 | 8.1:-39028390 | MS.gene009100:CDS |
| ACAAGTGCCTTCTGAAATGA+AGG | 0.505313 | 8.1:-39029405 | MS.gene009100:CDS |
| GAAGGTTGGCAGCGAAGTAA+AGG | 0.506684 | 8.1:-39028589 | MS.gene009100:CDS |
| TTTATCTGATTCATGGGATG+GGG | 0.509890 | 8.1:+39027362 | None:intergenic |
| AGCTGTTGAGGAGAAATTGT+TGG | 0.514874 | 8.1:-39028478 | MS.gene009100:CDS |
| AGATTTGTAGTGACTTCCAA+TGG | 0.518081 | 8.1:-39027532 | MS.gene009100:CDS |
| GCAGGGAAAGTTTAAGGCTA+CGG | 0.519335 | 8.1:-39029246 | MS.gene009100:CDS |
| GGCTGAGTACACAGCTGTTG+AGG | 0.523349 | 8.1:-39028490 | MS.gene009100:CDS |
| TGTTGATGGTAAAAGAAGGC+AGG | 0.523502 | 8.1:-39029264 | MS.gene009100:CDS |
| AAAGTCGGCGATGAAGTGTA+TGG | 0.526704 | 8.1:-39028561 | MS.gene009100:CDS |
| GTCACTACAAATCTGAATCC+AGG | 0.545336 | 8.1:+39027541 | None:intergenic |
| GATGTAGTTTATGATGCCAT+TGG | 0.546289 | 8.1:-39027858 | MS.gene009100:intron |
| AACATCAGGTACAGCAACAT+TGG | 0.547791 | 8.1:+39029334 | None:intergenic |
| GGTGAAGTTGAAGGAAGTGA+AGG | 0.557286 | 8.1:+39029575 | None:intergenic |
| ACAGGAGCTGTTACACCACC+TGG | 0.561590 | 8.1:-39027559 | MS.gene009100:CDS |
| GAGTGAATAATCACCGGAAG+CGG | 0.565819 | 8.1:+39029218 | None:intergenic |
| ACCCCAGCAACATCATAGCC+AGG | 0.566870 | 8.1:+39028618 | None:intergenic |
| GCAATGTGACAGAGCAGTGA+AGG | 0.567763 | 8.1:-39027614 | MS.gene009100:CDS |
| ACCCTGTTGATGGTAAAAGA+AGG | 0.577796 | 8.1:-39029268 | MS.gene009100:CDS |
| ACCCAAGCCTTCATTTCAGA+AGG | 0.580172 | 8.1:+39029398 | None:intergenic |
| CTAAACCCATATTTAGAGAG+TGG | 0.581322 | 8.1:-39027493 | MS.gene009100:CDS |
| GAAGTAAAGGACTTCAAAGT+CGG | 0.582450 | 8.1:-39028576 | MS.gene009100:CDS |
| ATCTACCACTGCTTCATCTG+AGG | 0.586940 | 8.1:-39029441 | MS.gene009100:CDS |
| TAAGCAGTCTCAATAGCAAG+AGG | 0.589060 | 8.1:+39028411 | None:intergenic |
| TGAATGAGAAAGCATTAGAT+GGG | 0.597261 | 8.1:-39028533 | MS.gene009100:CDS |
| GCTGGGGTCGTAGTGAAGGT+TGG | 0.602197 | 8.1:-39028603 | MS.gene009100:CDS |
| AGAACAAGAATAGATTTACC+AGG | 0.605332 | 8.1:+39028360 | None:intergenic |
| GTTGATGGTAAAAGAAGGCA+GGG | 0.608172 | 8.1:-39029263 | MS.gene009100:CDS |
| GGTGAGTTGAGAAGTTGTGG+TGG | 0.610962 | 8.1:+39029604 | None:intergenic |
| AATGGTGAGTTGAGAAGTTG+TGG | 0.615453 | 8.1:+39029601 | None:intergenic |
| CACAGCCTCAGATGAAGCAG+TGG | 0.626165 | 8.1:+39029436 | None:intergenic |
| TGTTGCTGGGGTCGTAGTGA+AGG | 0.634534 | 8.1:-39028607 | MS.gene009100:CDS |
| AACAAACAAAGCTACTGGAA+AGG | 0.637522 | 8.1:-39027395 | MS.gene009100:CDS |
| TGGGTGTATGGAGAATATGG+AGG | 0.638579 | 8.1:-39029380 | MS.gene009100:CDS |
| GCAGTGAAGGCAATAAAGGA+AGG | 0.640198 | 8.1:-39027601 | MS.gene009100:CDS |
| CAAATGTCTAGTGCTTGAAG+TGG | 0.641907 | 8.1:+39027959 | None:intergenic |
| CTGCTTATGAAGGTTTGGAG+AGG | 0.648485 | 8.1:-39028395 | MS.gene009100:CDS |
| GTGAAGGCAATAAAGGAAGG+TGG | 0.652587 | 8.1:-39027598 | MS.gene009100:CDS |
| CCCATATTTAGAGAGTGGAA+AGG | 0.653180 | 8.1:-39027488 | MS.gene009100:CDS |
| GAGTAAATACCTGAATCACT+AGG | 0.653524 | 8.1:+39028313 | None:intergenic |
| TCCTGGCTATGATGTTGCTG+GGG | 0.668886 | 8.1:-39028619 | MS.gene009100:CDS |
| TTTGGCTATTGACTACACAA+AGG | 0.684942 | 8.1:-39027910 | MS.gene009100:CDS |
| AAGCCAATTATAGATCCCAA+AGG | 0.697488 | 8.1:-39027463 | MS.gene009100:CDS |
| ACTACAAATCTGAATCCAGG+TGG | 0.755064 | 8.1:+39027544 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATTTCAAACAATT+TGG | - | chr8.1:39029199-39029218 | MS.gene009100:intron | 10.0% |
| !!! | GTGTATTTTATTAATTAGTT+TGG | + | chr8.1:39029269-39029288 | None:intergenic | 15.0% |
| !! | TTAAAATTTCTTGTGCATAA+GGG | - | chr8.1:39028910-39028929 | MS.gene009100:intron | 20.0% |
| !!! | CAATTAAGTTTTTGTATTCT+AGG | - | chr8.1:39028294-39028313 | MS.gene009100:intron | 20.0% |
| !!! | TAAACTACATCAAATTTTTC+TGG | + | chr8.1:39029119-39029138 | None:intergenic | 20.0% |
| !!! | TGAAATTTTTTATCGAAGAT+TGG | + | chr8.1:39029192-39029211 | None:intergenic | 20.0% |
| !!! | TGGTTATAATTTTGAGAAAA+TGG | + | chr8.1:39028773-39028792 | None:intergenic | 20.0% |
| !!! | TTAAGTACTGAAATCAAATT+TGG | - | chr8.1:39028322-39028341 | MS.gene009100:intron | 20.0% |
| !!! | TTACTTTTGCAAGAAAATTT+AGG | - | chr8.1:39028025-39028044 | MS.gene009100:intron | 20.0% |
| !!! | TTTAAAATTTCTTGTGCATA+AGG | - | chr8.1:39028909-39028928 | MS.gene009100:intron | 20.0% |
| ! | AAATCTATTCTTGTTCTCAA+TGG | - | chr8.1:39028632-39028651 | MS.gene009100:intron | 25.0% |
| !! | GAAAAGAAGAATTTTACCAA+TGG | + | chr8.1:39029147-39029166 | None:intergenic | 25.0% |
| !! | TTTTAGACGAAGTATATTTC+TGG | - | chr8.1:39028886-39028905 | MS.gene009100:intron | 25.0% |
| !!! | CAAGTTTTTTGGTTACTTTT+TGG | + | chr8.1:39027468-39027487 | None:intergenic | 25.0% |
| !!! | GTTTTTGTTTTTCTATGTTG+TGG | - | chr8.1:39027803-39027822 | MS.gene009100:intron | 25.0% |
| !!! | TGAAGATGATTTTAGAATTG+AGG | - | chr8.1:39027949-39027968 | MS.gene009100:CDS | 25.0% |
| !!! | TTTTTTGGTTACTTTTTGGT+TGG | + | chr8.1:39027464-39027483 | None:intergenic | 25.0% |
| AAAAGAGAGTGAATAATCAC+CGG | + | chr8.1:39027777-39027796 | None:intergenic | 30.0% | |
| AAAAGTTCTTAGTCAGGTAA+AGG | + | chr8.1:39028870-39028889 | None:intergenic | 30.0% | |
| AAAGTTCTTAGTCAGGTAAA+GGG | + | chr8.1:39028869-39028888 | None:intergenic | 30.0% | |
| AAGGAAAATCTCAGAGAAAA+TGG | + | chr8.1:39027435-39027454 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACACCTTA+TGG | + | chr8.1:39028176-39028195 | None:intergenic | 30.0% | |
| AGAACAAGAATAGATTTACC+AGG | + | chr8.1:39028629-39028648 | None:intergenic | 30.0% | |
| AGCAAAAGAAGAAAAGGTTA+TGG | - | chr8.1:39027887-39027906 | MS.gene009100:CDS | 30.0% | |
| ATGATATTGACACATTGTGT+TGG | + | chr8.1:39028793-39028812 | None:intergenic | 30.0% | |
| ATTGAAACAAACAAAGCTAC+TGG | - | chr8.1:39029586-39029605 | MS.gene009100:CDS | 30.0% | |
| CTACAATATTTCAGCATGAA+AGG | + | chr8.1:39028710-39028729 | None:intergenic | 30.0% | |
| !! | ACTGATTTTCAAAAACTCTC+TGG | + | chr8.1:39029225-39029244 | None:intergenic | 30.0% |
| !! | TGAATGAGAAAGCATTAGAT+GGG | - | chr8.1:39028453-39028472 | MS.gene009100:CDS | 30.0% |
| !!! | GTGTTGTTTGACAAGTTTTT+TGG | + | chr8.1:39027479-39027498 | None:intergenic | 30.0% |
| AACAAACAAAGCTACTGGAA+AGG | - | chr8.1:39029591-39029610 | MS.gene009100:CDS | 35.0% | |
| AAGACGCGTTTGTAGATTTA+AGG | - | chr8.1:39029314-39029333 | MS.gene009100:CDS | 35.0% | |
| AAGCCAATTATAGATCCCAA+AGG | - | chr8.1:39029523-39029542 | MS.gene009100:CDS | 35.0% | |
| ACCTTTCCACTCTCTAAATA+TGG | + | chr8.1:39029502-39029521 | None:intergenic | 35.0% | |
| AGAGAAAATGGTGAAGTTGA+AGG | + | chr8.1:39027423-39027442 | None:intergenic | 35.0% | |
| AGATTTGTAGTGACTTCCAA+TGG | - | chr8.1:39029454-39029473 | MS.gene009100:CDS | 35.0% | |
| AGTTTATAGACCAAAACGTG+AGG | - | chr8.1:39029242-39029261 | MS.gene009100:CDS | 35.0% | |
| ATTCTTGTTCTCAATGGTTC+TGG | - | chr8.1:39028638-39028657 | MS.gene009100:intron | 35.0% | |
| CAATGTGTCAATATCATGTC+CGG | - | chr8.1:39028796-39028815 | MS.gene009100:intron | 35.0% | |
| CCAAACTAACATCCTTTACT+TGG | - | chr8.1:39029338-39029357 | MS.gene009100:CDS | 35.0% | |
| CCAAGTAAAGGATGTTAGTT+TGG | + | chr8.1:39029341-39029360 | None:intergenic | 35.0% | |
| CCTTTCCACTCTCTAAATAT+GGG | + | chr8.1:39029501-39029520 | None:intergenic | 35.0% | |
| CTAAACCCATATTTAGAGAG+TGG | - | chr8.1:39029493-39029512 | MS.gene009100:CDS | 35.0% | |
| GAAGTAAAGGACTTCAAAGT+CGG | - | chr8.1:39028410-39028429 | MS.gene009100:CDS | 35.0% | |
| GAGTAAATACCTGAATCACT+AGG | + | chr8.1:39028676-39028695 | None:intergenic | 35.0% | |
| GATGTAGTTTATGATGCCAT+TGG | - | chr8.1:39029128-39029147 | MS.gene009100:intron | 35.0% | |
| GCCAAAGATCCAAATTGTTT+AGG | + | chr8.1:39028479-39028498 | None:intergenic | 35.0% | |
| GCCTAAACAATTTGGATCTT+TGG | - | chr8.1:39028475-39028494 | MS.gene009100:CDS | 35.0% | |
| GCTTCTAGCAAAAGAAGAAA+AGG | - | chr8.1:39027881-39027900 | MS.gene009100:CDS | 35.0% | |
| GGATTCAATAGCTATGATAG+TGG | - | chr8.1:39027908-39027927 | MS.gene009100:CDS | 35.0% | |
| GGCACTAAAACCTACAAATT+TGG | - | chr8.1:39028529-39028548 | MS.gene009100:CDS | 35.0% | |
| TCGCTAATTACATGTCCATA+AGG | - | chr8.1:39028158-39028177 | MS.gene009100:intron | 35.0% | |
| TCGTCTAAAAGTTCTTAGTC+AGG | + | chr8.1:39028876-39028895 | None:intergenic | 35.0% | |
| TGAGCAAAGTCCAAATTTGT+AGG | + | chr8.1:39028542-39028561 | None:intergenic | 35.0% | |
| TGGAATCTGTGTGAAGATAT+TGG | - | chr8.1:39027991-39028010 | MS.gene009100:CDS | 35.0% | |
| TTAGATGGGCCTAAACAATT+TGG | - | chr8.1:39028467-39028486 | MS.gene009100:CDS | 35.0% | |
| ! | AGGTGTTTTCAGCTTATTTC+TGG | - | chr8.1:39028178-39028197 | MS.gene009100:intron | 35.0% |
| ! | CAGCTAGCTAAACAAGTTTT+TGG | - | chr8.1:39028987-39029006 | MS.gene009100:intron | 35.0% |
| ! | TTTGGCTATTGACTACACAA+AGG | - | chr8.1:39029076-39029095 | MS.gene009100:intron | 35.0% |
| !! | GTGAATGAGAAAGCATTAGA+TGG | - | chr8.1:39028452-39028471 | MS.gene009100:CDS | 35.0% |
| !!! | ACTTTTTGGTTGGAAAGTGA+AGG | + | chr8.1:39027454-39027473 | None:intergenic | 35.0% |
| AACATCAGGTACAGCAACAT+TGG | + | chr8.1:39027655-39027674 | None:intergenic | 40.0% | |
| AAGAAGGCAGGGAAAGTTTA+AGG | - | chr8.1:39027734-39027753 | MS.gene009100:intron | 40.0% | |
| ACACAGATTCCACCCAATTT+CGG | + | chr8.1:39027983-39028002 | None:intergenic | 40.0% | |
| ACCTGATCTTCCTTAACATC+AGG | + | chr8.1:39027669-39027688 | None:intergenic | 40.0% | |
| ACCTGATGTTAAGGAAGATC+AGG | - | chr8.1:39027665-39027684 | MS.gene009100:intron | 40.0% | |
| ACTACAAATCTGAATCCAGG+TGG | + | chr8.1:39029445-39029464 | None:intergenic | 40.0% | |
| AGCAAAAGAGAATGGACCTT+TGG | + | chr8.1:39029542-39029561 | None:intergenic | 40.0% | |
| AGCTAGCTGCAAGTCATTAA+AGG | + | chr8.1:39028976-39028995 | None:intergenic | 40.0% | |
| AGCTGTTGAGGAGAAATTGT+TGG | - | chr8.1:39028508-39028527 | MS.gene009100:CDS | 40.0% | |
| ATCAAGGCATGCTAGATTCT+TGG | - | chr8.1:39027512-39027531 | MS.gene009100:CDS | 40.0% | |
| CAAATGTCTAGTGCTTGAAG+TGG | + | chr8.1:39029030-39029049 | None:intergenic | 40.0% | |
| CACTCTTGTCTTCTTCATCA+AGG | - | chr8.1:39027496-39027515 | MS.gene009100:CDS | 40.0% | |
| CACTTCAAGCACTAGACATT+TGG | - | chr8.1:39029028-39029047 | MS.gene009100:intron | 40.0% | |
| CATGTAATCATCACATGCGT+CGG | + | chr8.1:39028741-39028760 | None:intergenic | 40.0% | |
| CATGTACTTGTGAGACTGTT+TGG | - | chr8.1:39028120-39028139 | MS.gene009100:intron | 40.0% | |
| CCCATATTTAGAGAGTGGAA+AGG | - | chr8.1:39029498-39029517 | MS.gene009100:CDS | 40.0% | |
| GAAAAGTCTTGGAGCTGATT+TGG | - | chr8.1:39029058-39029077 | MS.gene009100:intron | 40.0% | |
| GAGGAAAGCTTACCGAAATT+GGG | - | chr8.1:39027968-39027987 | MS.gene009100:CDS | 40.0% | |
| GCAAAAGAGAATGGACCTTT+GGG | + | chr8.1:39029541-39029560 | None:intergenic | 40.0% | |
| GCTATTGAGACTGCTTATGA+AGG | - | chr8.1:39028581-39028600 | MS.gene009100:CDS | 40.0% | |
| GCTGCAAGTCATTAAAGGTA+TGG | + | chr8.1:39028971-39028990 | None:intergenic | 40.0% | |
| GTCACTACAAATCTGAATCC+AGG | + | chr8.1:39029448-39029467 | None:intergenic | 40.0% | |
| GTTATTGCTCTATGAAGCAC+AGG | + | chr8.1:39028830-39028849 | None:intergenic | 40.0% | |
| TAAGCAGTCTCAATAGCAAG+AGG | + | chr8.1:39028578-39028597 | None:intergenic | 40.0% | |
| TGAAGGAAGTGAAGGAAGAA+TGG | + | chr8.1:39027406-39027425 | None:intergenic | 40.0% | |
| TGAGACTGCTTATGAAGGTT+TGG | - | chr8.1:39028586-39028605 | MS.gene009100:CDS | 40.0% | |
| TGAGGAAAGCTTACCGAAAT+TGG | - | chr8.1:39027967-39027986 | MS.gene009100:CDS | 40.0% | |
| TGTTGCTGTACCTGATGTTA+AGG | - | chr8.1:39027656-39027675 | MS.gene009100:intron | 40.0% | |
| TTGGAGCTACTGAAAAGTCT+TGG | - | chr8.1:39029047-39029066 | MS.gene009100:intron | 40.0% | |
| TTTCTTCAGAACAGCTCCAT+TGG | + | chr8.1:39029473-39029492 | None:intergenic | 40.0% | |
| ! | AATGGTGAGTTGAGAAGTTG+TGG | + | chr8.1:39027388-39027407 | None:intergenic | 40.0% |
| ! | CCTTTACTTGGTGATTTGCA+GGG | - | chr8.1:39029350-39029369 | MS.gene009100:CDS | 40.0% |
| ! | GCCTTCTTTTACCATCAACA+GGG | + | chr8.1:39027722-39027741 | None:intergenic | 40.0% |
| ! | TCCTTTACTTGGTGATTTGC+AGG | - | chr8.1:39029349-39029368 | MS.gene009100:CDS | 40.0% |
| ! | TGCCTTCTTTTACCATCAAC+AGG | + | chr8.1:39027723-39027742 | None:intergenic | 40.0% |
| !! | ACAAGTGCCTTCTGAAATGA+AGG | - | chr8.1:39027581-39027600 | MS.gene009100:CDS | 40.0% |
| !! | ACCCTGTTGATGGTAAAAGA+AGG | - | chr8.1:39027718-39027737 | MS.gene009100:intron | 40.0% |
| !! | GGACCTTTGGGATCTATAAT+TGG | + | chr8.1:39029529-39029548 | None:intergenic | 40.0% |
| !! | GTTGATGGTAAAAGAAGGCA+GGG | - | chr8.1:39027723-39027742 | MS.gene009100:intron | 40.0% |
| !! | TGTTGATGGTAAAAGAAGGC+AGG | - | chr8.1:39027722-39027741 | MS.gene009100:intron | 40.0% |
| !! | TTAGTTTGGTCCTCACGTTT+TGG | + | chr8.1:39029255-39029274 | None:intergenic | 40.0% |
| AAAGTCGGCGATGAAGTGTA+TGG | - | chr8.1:39028425-39028444 | MS.gene009100:CDS | 45.0% | |
| ACCCAAGCCTTCATTTCAGA+AGG | + | chr8.1:39027591-39027610 | None:intergenic | 45.0% | |
| AGTTGGAAGCCTAGTGATTC+AGG | - | chr8.1:39028664-39028683 | MS.gene009100:intron | 45.0% | |
| ATCTACCACTGCTTCATCTG+AGG | - | chr8.1:39027545-39027564 | MS.gene009100:CDS | 45.0% | |
| CAGAGCAGTGAAGGCAATAA+AGG | - | chr8.1:39029381-39029400 | MS.gene009100:CDS | 45.0% | |
| CATAGCCAGGAACAGTCTAA+TGG | + | chr8.1:39028358-39028377 | None:intergenic | 45.0% | |
| CCCTGCAAATCACCAAGTAA+AGG | + | chr8.1:39029353-39029372 | None:intergenic | 45.0% | |
| CTGCTTATGAAGGTTTGGAG+AGG | - | chr8.1:39028591-39028610 | MS.gene009100:CDS | 45.0% | |
| GAAAGCTTACCGAAATTGGG+TGG | - | chr8.1:39027971-39027990 | MS.gene009100:CDS | 45.0% | |
| GAAATGAAGGCTTGGGTGTA+TGG | - | chr8.1:39027594-39027613 | MS.gene009100:CDS | 45.0% | |
| GAGTGAATAATCACCGGAAG+CGG | + | chr8.1:39027771-39027790 | None:intergenic | 45.0% | |
| GCAACCTGAGCAAAAGAGAA+TGG | + | chr8.1:39029550-39029569 | None:intergenic | 45.0% | |
| GCAGTGAAGGCAATAAAGGA+AGG | - | chr8.1:39029385-39029404 | MS.gene009100:CDS | 45.0% | |
| GCTTGGGTGTATGGAGAATA+TGG | - | chr8.1:39027603-39027622 | MS.gene009100:CDS | 45.0% | |
| GGTGAAGTTGAAGGAAGTGA+AGG | + | chr8.1:39027414-39027433 | None:intergenic | 45.0% | |
| GTGAAGGCAATAAAGGAAGG+TGG | - | chr8.1:39029388-39029407 | MS.gene009100:CDS | 45.0% | |
| TATGAAGGTTTGGAGAGGAC+TGG | - | chr8.1:39028596-39028615 | MS.gene009100:CDS | 45.0% | |
| TGGGTGTATGGAGAATATGG+AGG | - | chr8.1:39027606-39027625 | MS.gene009100:CDS | 45.0% | |
| TGTGTCCATTAGACTGTTCC+TGG | - | chr8.1:39028350-39028369 | MS.gene009100:CDS | 45.0% | |
| TTCCTGGCTATGATGTTGCT+GGG | - | chr8.1:39028366-39028385 | MS.gene009100:CDS | 45.0% | |
| ! | AGGTCCATTCTCTTTTGCTC+AGG | - | chr8.1:39029543-39029562 | MS.gene009100:CDS | 45.0% |
| ! | GCAGGGAAAGTTTAAGGCTA+CGG | - | chr8.1:39027740-39027759 | MS.gene009100:intron | 45.0% |
| !! | CTTGTTCTCAATGGTTCTGG+TGG | - | chr8.1:39028641-39028660 | MS.gene009100:intron | 45.0% |
| !! | GCCTTCTGAAATGAAGGCTT+GGG | - | chr8.1:39027587-39027606 | MS.gene009100:CDS | 45.0% |
| !! | TGCCTTCTGAAATGAAGGCT+TGG | - | chr8.1:39027586-39027605 | MS.gene009100:CDS | 45.0% |
| GAAGGTTGGCAGCGAAGTAA+AGG | - | chr8.1:39028397-39028416 | MS.gene009100:CDS | 50.0% | |
| GCAATGTGACAGAGCAGTGA+AGG | - | chr8.1:39029372-39029391 | MS.gene009100:CDS | 50.0% | |
| GCTGCTCTTAACCCTGTTGA+TGG | - | chr8.1:39027708-39027727 | MS.gene009100:intron | 50.0% | |
| GGCAGTGTAGTAGCACTAAC+AGG | - | chr8.1:39029409-39029428 | MS.gene009100:CDS | 50.0% | |
| GTTCCTGGCTATGATGTTGC+TGG | - | chr8.1:39028365-39028384 | MS.gene009100:CDS | 50.0% | |
| TCCTGGCTATGATGTTGCTG+GGG | - | chr8.1:39028367-39028386 | MS.gene009100:CDS | 50.0% | |
| TGAAGCACAGGCATAGACAC+CGG | + | chr8.1:39028818-39028837 | None:intergenic | 50.0% | |
| ! | GAGAGGACTGGATTTTCTCC+TGG | - | chr8.1:39028608-39028627 | MS.gene009100:CDS | 50.0% |
| ! | GGTGAGTTGAGAAGTTGTGG+TGG | + | chr8.1:39027385-39027404 | None:intergenic | 50.0% |
| !! | CTCAATGGTTCTGGTGGAGT+TGG | - | chr8.1:39028647-39028666 | MS.gene009100:intron | 50.0% |
| ACAGGAGCTGTTACACCACC+TGG | - | chr8.1:39029427-39029446 | MS.gene009100:CDS | 55.0% | |
| ACCCCAGCAACATCATAGCC+AGG | + | chr8.1:39028371-39028390 | None:intergenic | 55.0% | |
| CACAGCCTCAGATGAAGCAG+TGG | + | chr8.1:39027553-39027572 | None:intergenic | 55.0% | |
| GGCTGAGTACACAGCTGTTG+AGG | - | chr8.1:39028496-39028515 | MS.gene009100:CDS | 55.0% | |
| TGTTGCTGGGGTCGTAGTGA+AGG | - | chr8.1:39028379-39028398 | MS.gene009100:CDS | 55.0% | |
| GCTGGGGTCGTAGTGAAGGT+TGG | - | chr8.1:39028383-39028402 | MS.gene009100:CDS | 60.0% | |
| GGCTACGGATTCTCCGCTTC+CGG | - | chr8.1:39027755-39027774 | MS.gene009100:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 39027372 | 39029636 | 39027372 | ID=MS.gene009100 |
| chr8.1 | mRNA | 39027372 | 39029636 | 39027372 | ID=MS.gene009100.t1;Parent=MS.gene009100 |
| chr8.1 | exon | 39029232 | 39029636 | 39029232 | ID=MS.gene009100.t1.exon1;Parent=MS.gene009100.t1 |
| chr8.1 | CDS | 39029232 | 39029636 | 39029232 | ID=cds.MS.gene009100.t1;Parent=MS.gene009100.t1 |
| chr8.1 | exon | 39028323 | 39028646 | 39028323 | ID=MS.gene009100.t1.exon2;Parent=MS.gene009100.t1 |
| chr8.1 | CDS | 39028323 | 39028646 | 39028323 | ID=cds.MS.gene009100.t1;Parent=MS.gene009100.t1 |
| chr8.1 | exon | 39027859 | 39028018 | 39027859 | ID=MS.gene009100.t1.exon3;Parent=MS.gene009100.t1 |
| chr8.1 | CDS | 39027859 | 39028018 | 39027859 | ID=cds.MS.gene009100.t1;Parent=MS.gene009100.t1 |
| chr8.1 | exon | 39027372 | 39027637 | 39027372 | ID=MS.gene009100.t1.exon4;Parent=MS.gene009100.t1 |
| chr8.1 | CDS | 39027372 | 39027637 | 39027372 | ID=cds.MS.gene009100.t1;Parent=MS.gene009100.t1 |
| Gene Sequence |
| Protein sequence |
