Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009203.t1 | RHN63325.1 | 96.9 | 319 | 10 | 0 | 1 | 319 | 51 | 369 | 5.00E-151 | 543.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009203.t1 | Q8H112 | 75.9 | 323 | 65 | 5 | 5 | 319 | 3 | 320 | 6.9e-109 | 395.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009203.t1 | A0A072V0M0 | 96.9 | 319 | 10 | 0 | 1 | 319 | 1 | 319 | 3.6e-151 | 543.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009203 | MS.gene37223 | PPI |
| MS.gene011450 | MS.gene009203 | PPI |
| MS.gene71059 | MS.gene009203 | PPI |
| MS.gene69468 | MS.gene009203 | PPI |
| MS.gene009203 | MS.gene011450 | PPI |
| MS.gene009203 | MS.gene71059 | PPI |
| MS.gene009203 | MS.gene62822 | PPI |
| MS.gene009203 | MS.gene033404 | PPI |
| MS.gene009203 | MS.gene69468 | PPI |
| MS.gene038660 | MS.gene009203 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009203.t1 | MTR_4g102440 | 96.552 | 319 | 11 | 0 | 1 | 319 | 1 | 319 | 0.0 | 632 |
| MS.gene009203.t1 | MTR_5g011220 | 78.671 | 286 | 56 | 3 | 36 | 319 | 29 | 311 | 7.33e-165 | 461 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009203.t1 | AT4G22890 | 81.429 | 280 | 47 | 3 | 40 | 319 | 46 | 320 | 2.93e-167 | 468 |
| MS.gene009203.t1 | AT4G22890 | 81.429 | 280 | 47 | 3 | 40 | 319 | 46 | 320 | 2.93e-167 | 468 |
| MS.gene009203.t1 | AT4G22890 | 81.071 | 280 | 45 | 3 | 40 | 319 | 46 | 317 | 1.85e-166 | 466 |
| MS.gene009203.t1 | AT4G22890 | 80.714 | 280 | 47 | 3 | 40 | 319 | 46 | 318 | 2.40e-165 | 463 |
| MS.gene009203.t1 | AT4G11960 | 75.159 | 314 | 72 | 4 | 7 | 319 | 1 | 309 | 1.59e-161 | 453 |
| MS.gene009203.t1 | AT4G11960 | 84.127 | 252 | 39 | 1 | 68 | 319 | 42 | 292 | 3.95e-156 | 439 |
| MS.gene009203.t1 | AT4G22890 | 81.226 | 261 | 44 | 3 | 40 | 300 | 46 | 301 | 1.58e-153 | 432 |
| MS.gene009203.t1 | AT5G59400 | 29.474 | 190 | 102 | 7 | 139 | 302 | 75 | 258 | 1.42e-11 | 64.7 |
Find 0 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATCTTTTTCATTATAAT+TGG | - | 55388:9467-9486 | MS.gene009203:intergenic | 10.0% |
| !!! | CTGATTATTTAAATTTTAAA+AGG | + | 55388:9700-9719 | MS.gene009203:intron | 10.0% |
| !! | ACTCTTATATATATGAATAA+TGG | + | 55388:7292-7311 | MS.gene009203:intron | 15.0% |
| !! | ATAAAATAGATAAAATGACA+TGG | - | 55388:6709-6728 | MS.gene009203:intergenic | 15.0% |
| !!! | ATTTGTTTATATTTGAGATT+GGG | + | 55388:7972-7991 | MS.gene009203:intron | 15.0% |
| !!! | ATTTTATTTTGTGTGTAAAT+TGG | + | 55388:6580-6599 | MS.gene009203:intron | 15.0% |
| !!! | TATAACAGATATTGATATTT+TGG | + | 55388:9501-9520 | MS.gene009203:intron | 15.0% |
| !! | AAGAAAATAAGAAACAAGTT+TGG | - | 55388:6950-6969 | MS.gene009203:intergenic | 20.0% |
| !! | AATAAAATGTTAGAAAGGAA+AGG | - | 55388:9233-9252 | MS.gene009203:intergenic | 20.0% |
| !! | AATAATAAGTATGCAATTCT+AGG | - | 55388:9152-9171 | MS.gene009203:intergenic | 20.0% |
| !! | AATCACAAAATCTTTGATAA+TGG | - | 55388:9623-9642 | MS.gene009203:intergenic | 20.0% |
| !! | ACAAAAATTGGATACTAATA+TGG | - | 55388:8938-8957 | MS.gene009203:intergenic | 20.0% |
| !! | AGAATTGCATACTTATTATT+TGG | + | 55388:9152-9171 | MS.gene009203:intron | 20.0% |
| !! | ATAAATGATAAAACGTATGT+AGG | - | 55388:8314-8333 | MS.gene009203:intergenic | 20.0% |
| !! | ATGGAGATTATAAAATATGT+AGG | - | 55388:8919-8938 | MS.gene009203:intergenic | 20.0% |
| !! | GAATTGCATACTTATTATTT+GGG | + | 55388:9153-9172 | MS.gene009203:intron | 20.0% |
| !! | GATAAGTATTAAGTAAAAAG+TGG | - | 55388:6774-6793 | MS.gene009203:intergenic | 20.0% |
| !! | TAAATGATAAAACGTATGTA+GGG | - | 55388:8313-8332 | MS.gene009203:intergenic | 20.0% |
| !! | TATTATAAAATATGATTCGC+TGG | - | 55388:9389-9408 | MS.gene009203:intergenic | 20.0% |
| !! | TGTTATATGATCATATATCA+TGG | - | 55388:8694-8713 | MS.gene009203:intergenic | 20.0% |
| !!! | ACTTATTACAGTCTTTTTAT+AGG | + | 55388:8190-8209 | MS.gene009203:intron | 20.0% |
| !!! | ATACTTATCATTTTTCTTTC+AGG | + | 55388:6785-6804 | MS.gene009203:intron | 20.0% |
| !!! | CAAAGATTTTGTGATTTTAA+AGG | + | 55388:9627-9646 | MS.gene009203:CDS | 20.0% |
| !!! | CTATATTCTTATTTCAGTTT+TGG | + | 55388:7841-7860 | MS.gene009203:intron | 20.0% |
| !!! | GATTTGTTTATATTTGAGAT+TGG | + | 55388:7971-7990 | MS.gene009203:intron | 20.0% |
| !!! | TACTTATCATTTTTCTTTCA+GGG | + | 55388:6786-6805 | MS.gene009203:intron | 20.0% |
| !!! | TTATTTTCGTATAATCTGTA+TGG | + | 55388:7002-7021 | MS.gene009203:intron | 20.0% |
| ! | AAAATAAGAAACAAGTTTGG+TGG | - | 55388:6947-6966 | MS.gene009203:intergenic | 25.0% |
| ! | AAAATTTCTTGAAGCTTCTA+TGG | + | 55388:7386-7405 | MS.gene009203:CDS | 25.0% |
| ! | AAATAAGAAACAAGTTTGGT+GGG | - | 55388:6946-6965 | MS.gene009203:intergenic | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | - | 55388:9975-9994 | MS.gene009203:intergenic | 25.0% |
| ! | AAGGCAATAAAATGTTAGAA+AGG | - | 55388:9238-9257 | MS.gene009203:intergenic | 25.0% |
| ! | AAGTATTAAGTAAAAAGTGG+AGG | - | 55388:6771-6790 | MS.gene009203:intergenic | 25.0% |
| ! | AGAAAAAGAGAATGGAATAA+AGG | - | 55388:6447-6466 | MS.gene009203:intergenic | 25.0% |
| ! | AGAAGATATAAAAACTCCAA+TGG | - | 55388:9286-9305 | MS.gene009203:intergenic | 25.0% |
| ! | AGATGTAGTACTATATCATT+TGG | + | 55388:7569-7588 | MS.gene009203:intron | 25.0% |
| ! | AGTTGATCTAACCTTTAATT+TGG | - | 55388:7596-7615 | MS.gene009203:intergenic | 25.0% |
| ! | ATCCATCTTTCTTAAATCAA+AGG | + | 55388:8959-8978 | MS.gene009203:intron | 25.0% |
| ! | ATTTACTAGAATTCAACTTC+AGG | + | 55388:8095-8114 | MS.gene009203:intron | 25.0% |
| ! | CAAGTGAAAATGAAACTAAA+AGG | - | 55388:9550-9569 | MS.gene009203:intergenic | 25.0% |
| ! | CAATGCTGAATAATAAATAC+AGG | + | 55388:7920-7939 | MS.gene009203:intron | 25.0% |
| ! | GAAAAAGAGAATGGAATAAA+GGG | - | 55388:6446-6465 | MS.gene009203:intergenic | 25.0% |
| ! | GAAAGTGAAAATAGAACATA+TGG | + | 55388:8453-8472 | MS.gene009203:intron | 25.0% |
| ! | GTTCTATCATAAACCAAATT+TGG | + | 55388:9935-9954 | MS.gene009203:intron | 25.0% |
| ! | TAACAGTCATTCTATTATGA+GGG | + | 55388:7164-7183 | MS.gene009203:intron | 25.0% |
| ! | TATCATTTGGACCAAATTAA+AGG | + | 55388:7582-7601 | MS.gene009203:intron | 25.0% |
| ! | TGGTTTATGATAGAACATTA+TGG | - | 55388:9931-9950 | MS.gene009203:intergenic | 25.0% |
| ! | TTAACAGTCATTCTATTATG+AGG | + | 55388:7163-7182 | MS.gene009203:intron | 25.0% |
| ! | TTGTAGCATAGATCAAAAAA+AGG | + | 55388:6862-6881 | MS.gene009203:CDS | 25.0% |
| ! | TTTGATCTATGCTACAATAT+GGG | - | 55388:6859-6878 | MS.gene009203:intergenic | 25.0% |
| !! | AACCTTTGATTTAAGAAAGA+TGG | - | 55388:8964-8983 | MS.gene009203:intergenic | 25.0% |
| !! | CATTCATATATTTGATTTCG+AGG | + | 55388:8536-8555 | MS.gene009203:intron | 25.0% |
| !! | TAAGTTGAAACTGAATCTAA+AGG | + | 55388:7452-7471 | MS.gene009203:CDS | 25.0% |
| !! | TGAAACCATAATAGTTCTAT+CGG | - | 55388:10304-10323 | MS.gene009203:intergenic | 25.0% |
| !! | TGAAGAATTTGATAATCTCA+AGG | + | 55388:7205-7224 | MS.gene009203:CDS | 25.0% |
| !! | TTTATTGCCTTTTAAATCCA+TGG | + | 55388:9247-9266 | MS.gene009203:intron | 25.0% |
| !! | TTTTGATCTATGCTACAATA+TGG | - | 55388:6860-6879 | MS.gene009203:intergenic | 25.0% |
| !!! | ATCAGTTCTATTTGTTATAC+TGG | + | 55388:7648-7667 | MS.gene009203:intron | 25.0% |
| !!! | CTTTTAGTTTCATTTTCACT+TGG | + | 55388:9548-9567 | MS.gene009203:CDS | 25.0% |
| !!! | GCATTTTATTTGACATGAAA+TGG | - | 55388:8069-8088 | MS.gene009203:intergenic | 25.0% |
| !!! | GTTTTTTAACACGATTTTGT+AGG | + | 55388:9655-9674 | MS.gene009203:intron | 25.0% |
| !!! | GTTTTTTTTCCATCATCAAA+TGG | - | 55388:9367-9386 | MS.gene009203:intergenic | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | - | 55388:10117-10136 | MS.gene009203:intergenic | 25.0% |
| !!! | TCAGTTCTATTTGTTATACT+GGG | + | 55388:7649-7668 | MS.gene009203:intron | 25.0% |
| !!! | TGAAAGTACATTTTTGCTTT+AGG | + | 55388:9001-9020 | MS.gene009203:intron | 25.0% |
| !!! | TGACTTGTGTTGATTTATAA+TGG | + | 55388:8336-8355 | MS.gene009203:intron | 25.0% |
| AAAATAGGCTTAGATGGTTT+GGG | - | 55388:10102-10121 | MS.gene009203:intergenic | 30.0% | |
| AAAATGAAACTAAAAGGCTC+CGG | - | 55388:9544-9563 | MS.gene009203:intergenic | 30.0% | |
| ACTATACTGTCAATTTCAAG+TGG | + | 55388:9767-9786 | MS.gene009203:CDS | 30.0% | |
| ACTTCTGCCAAATATATGAT+TGG | + | 55388:8425-8444 | MS.gene009203:intron | 30.0% | |
| AGTAGAATGTTGACATCAAA+TGG | - | 55388:8378-8397 | MS.gene009203:intergenic | 30.0% | |
| ATAGAGCTAGATATACAATG+AGG | - | 55388:9588-9607 | MS.gene009203:intergenic | 30.0% | |
| ATCATATATTTGGCAGAAGT+AGG | - | 55388:8425-8444 | MS.gene009203:intergenic | 30.0% | |
| ATCATCAAATGGTAATCCAT+TGG | - | 55388:9356-9375 | MS.gene009203:intergenic | 30.0% | |
| CAAATCCAGTTATATCATCA+AGG | - | 55388:9087-9106 | MS.gene009203:intergenic | 30.0% | |
| CAAGTAGTGACAAGAAATAT+AGG | + | 55388:8039-8058 | MS.gene009203:intron | 30.0% | |
| GAAACAGAAGAAAAAGAGAA+TGG | - | 55388:6455-6474 | MS.gene009203:intergenic | 30.0% | |
| GAAAGATGGATGACAAAAAT+TGG | - | 55388:8950-8969 | MS.gene009203:intergenic | 30.0% | |
| GACATCAAATGGTTAATCAA+AGG | - | 55388:8367-8386 | MS.gene009203:intergenic | 30.0% | |
| GATATCTGGACTAAAATTTG+TGG | + | 55388:7122-7141 | MS.gene009203:intron | 30.0% | |
| GGAGTGGAATTAAAAGTTAA+AGG | - | 55388:9042-9061 | MS.gene009203:intergenic | 30.0% | |
| GTCATATGACTGATATTAGT+AGG | - | 55388:8004-8023 | MS.gene009203:intergenic | 30.0% | |
| TAGAGCTAGATATACAATGA+GGG | - | 55388:9587-9606 | MS.gene009203:intergenic | 30.0% | |
| TATGACTTAAGCGTCTATTT+GGG | + | 55388:8589-8608 | MS.gene009203:intron | 30.0% | |
| TCTTTAAATAGTCAACAGAC+AGG | - | 55388:8226-8245 | MS.gene009203:intergenic | 30.0% | |
| TTATCGAAAGAGAGACTTAA+TGG | - | 55388:6973-6992 | MS.gene009203:intergenic | 30.0% | |
| TTGTTGAATTACTGTTGTGT+AGG | + | 55388:7351-7370 | MS.gene009203:intron | 30.0% | |
| ! | AGAATTTGATAATCTCAAGG+AGG | + | 55388:7208-7227 | MS.gene009203:CDS | 30.0% |
| ! | AGGATTTTACCCTATCATTT+GGG | + | 55388:8115-8134 | MS.gene009203:intron | 30.0% |
| ! | ATACTGTTCAACACAACTTT+TGG | + | 55388:7100-7119 | MS.gene009203:intron | 30.0% |
| ! | ATCGTTTATTTGAGTCTTGT+TGG | + | 55388:6608-6627 | MS.gene009203:intron | 30.0% |
| ! | ATTGTGTCACTGGTAATTAA+AGG | + | 55388:7541-7560 | MS.gene009203:intron | 30.0% |
| ! | GACCTCTAAATCTTTTCTAA+TGG | + | 55388:9970-9989 | MS.gene009203:intron | 30.0% |
| ! | GTTTCTCTAATAGTTTTCCT+AGG | + | 55388:9992-10011 | MS.gene009203:intron | 30.0% |
| ! | TCTACCAACTTTTCTACTAT+AGG | + | 55388:10121-10140 | MS.gene009203:intron | 30.0% |
| ! | TCTGAGACCAATCATATATT+TGG | - | 55388:8435-8454 | MS.gene009203:intergenic | 30.0% |
| ! | TGACAGTAGTTGCATTTTTA+AGG | + | 55388:9206-9225 | MS.gene009203:intron | 30.0% |
| ! | TTCTTCCTTGATGATATAAC+TGG | + | 55388:9079-9098 | MS.gene009203:CDS | 30.0% |
| !! | AATGGATTACCATTTGATGA+TGG | + | 55388:9355-9374 | MS.gene009203:intron | 30.0% |
| !! | ATTTTGTTGCTTGCGTAATT+TGG | + | 55388:8745-8764 | MS.gene009203:intron | 30.0% |
| !! | TTTCATTTTCACTTGGTTTG+CGG | + | 55388:9555-9574 | MS.gene009203:CDS | 30.0% |
| AAAAAGGAGAAGAAATCCGT+TGG | + | 55388:6878-6897 | MS.gene009203:CDS | 35.0% | |
| AACTGAAATGGTGTATGACT+CGG | + | 55388:10411-10430 | MS.gene009203:CDS | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | - | 55388:10047-10066 | MS.gene009203:intergenic | 35.0% | |
| AATGGAATAAAGGGAGTTTG+GGG | - | 55388:6437-6456 | MS.gene009203:intergenic | 35.0% | |
| ACTGAAAATACCTCCTTCTT+TGG | + | 55388:9743-9762 | MS.gene009203:CDS | 35.0% | |
| ACTGCTTCCATGGATTTAAA+AGG | - | 55388:9257-9276 | MS.gene009203:intergenic | 35.0% | |
| AGAAGAATCTAACAGATCAC+AGG | - | 55388:9063-9082 | MS.gene009203:intergenic | 35.0% | |
| AGAATGGAATAAAGGGAGTT+TGG | - | 55388:6439-6458 | MS.gene009203:intergenic | 35.0% | |
| AGAGCTAGATATACAATGAG+GGG | - | 55388:9586-9605 | MS.gene009203:intergenic | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | - | 55388:9963-9982 | MS.gene009203:intergenic | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | - | 55388:10128-10147 | MS.gene009203:intergenic | 35.0% | |
| AGCATGTAGAATATGACATC+AGG | - | 55388:8896-8915 | MS.gene009203:intergenic | 35.0% | |
| AGTCAAGTTAAAAGAGGTAG+AGG | - | 55388:10022-10041 | MS.gene009203:intergenic | 35.0% | |
| ATGAAAAAAATATCCCCTGC+AGG | + | 55388:9308-9327 | MS.gene009203:intron | 35.0% | |
| ATTAACATTTGAACCAGCTG+TGG | + | 55388:10388-10407 | MS.gene009203:intron | 35.0% | |
| ATTAGAGAGCAAAATGCCAA+TGG | + | 55388:9337-9356 | MS.gene009203:intron | 35.0% | |
| CAGTAAATTATGCCAGAAAG+AGG | - | 55388:7725-7744 | MS.gene009203:intergenic | 35.0% | |
| CCTAATTTAACCAAGGTCTT+GGG | - | 55388:6680-6699 | MS.gene009203:intergenic | 35.0% | |
| CTATGACTTAAGCGTCTATT+TGG | + | 55388:8588-8607 | MS.gene009203:intron | 35.0% | |
| CTGAAAATACCTCCTTCTTT+GGG | + | 55388:9744-9763 | MS.gene009203:CDS | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | - | 55388:10103-10122 | MS.gene009203:intergenic | 35.0% | |
| GAATGGAATAAAGGGAGTTT+GGG | - | 55388:6438-6457 | MS.gene009203:intergenic | 35.0% | |
| GAATTACTGTTGTGTAGGTT+CGG | + | 55388:7356-7375 | MS.gene009203:intron | 35.0% | |
| GGCATAATTTACTGAACTCA+TGG | + | 55388:7731-7750 | MS.gene009203:intron | 35.0% | |
| GGTAAGAAGAGTAGATCAAA+TGG | - | 55388:10050-10069 | MS.gene009203:intergenic | 35.0% | |
| GTAGTGACAAGAAATATAGG+AGG | + | 55388:8042-8061 | MS.gene009203:intron | 35.0% | |
| GTCATTCTATTATGAGGGAA+AGG | + | 55388:7169-7188 | MS.gene009203:intron | 35.0% | |
| GTTCTCTCCTAATTTAACCA+AGG | - | 55388:6687-6706 | MS.gene009203:intergenic | 35.0% | |
| GTTGTGTTGAACAGTATCAA+CGG | - | 55388:7097-7116 | MS.gene009203:intergenic | 35.0% | |
| TAAAACGTATGTAGGGAAAC+AGG | - | 55388:8306-8325 | MS.gene009203:intergenic | 35.0% | |
| TACTCTTTGTCGCTCAAAAT+TGG | - | 55388:7429-7448 | MS.gene009203:intergenic | 35.0% | |
| TCCTAATTTAACCAAGGTCT+TGG | - | 55388:6681-6700 | MS.gene009203:intergenic | 35.0% | |
| TGAAAAAAATATCCCCTGCA+GGG | + | 55388:9309-9328 | MS.gene009203:intron | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | - | 55388:10108-10127 | MS.gene009203:intergenic | 35.0% | |
| TGTTAAAGTGAAGGCTACTT+TGG | - | 55388:6393-6412 | MS.gene009203:intergenic | 35.0% | |
| TTGATCTACTCTTCTTACCA+CGG | + | 55388:10051-10070 | MS.gene009203:intron | 35.0% | |
| ! | AGAGCATTTGACTTTGTTGT+TGG | - | 55388:9798-9817 | MS.gene009203:intergenic | 35.0% |
| ! | AGTTTGGTGGGATATATACT+TGG | - | 55388:6934-6953 | MS.gene009203:intergenic | 35.0% |
| ! | ATACTGTCAATTTCAAGTGG+TGG | + | 55388:9770-9789 | MS.gene009203:CDS | 35.0% |
| ! | ATTTTTCTTTCAGGGAATGC+TGG | + | 55388:6794-6813 | MS.gene009203:intron | 35.0% |
| ! | CAACACAACTTTTGGATATC+TGG | + | 55388:7108-7127 | MS.gene009203:intron | 35.0% |
| ! | CAATGAGTTGGATCCAAATT+TGG | - | 55388:9951-9970 | MS.gene009203:intergenic | 35.0% |
| ! | CACTTACCTTTTTACTTCGA+AGG | - | 55388:7809-7828 | MS.gene009203:intergenic | 35.0% |
| ! | CAGGATTTTACCCTATCATT+TGG | + | 55388:8114-8133 | MS.gene009203:intron | 35.0% |
| ! | GAAAAGTCTTCTGTGTTTTG+TGG | + | 55388:7506-7525 | MS.gene009203:intron | 35.0% |
| ! | GGATGAGTTTTGCAAATCTA+TGG | - | 55388:9446-9465 | MS.gene009203:intergenic | 35.0% |
| ! | GTTTTGTATCTTCCTCTTTC+TGG | + | 55388:7710-7729 | MS.gene009203:intron | 35.0% |
| ! | TCTATTTGGGAAGGTGATTT+TGG | + | 55388:8602-8621 | MS.gene009203:intron | 35.0% |
| ! | TGAGATCACTTATTTGCTAG+AGG | + | 55388:9105-9124 | MS.gene009203:CDS | 35.0% |
| !! | ATCTAGCTCTATCACTAACA+AGG | + | 55388:9596-9615 | MS.gene009203:CDS | 35.0% |
| !! | TCTAGCTCTATCACTAACAA+GGG | + | 55388:9597-9616 | MS.gene009203:CDS | 35.0% |
| AATCTAACAGATCACAGGAG+TGG | - | 55388:9058-9077 | MS.gene009203:intergenic | 40.0% | |
| ACTCGTCAATCCCAAATGAT+AGG | - | 55388:8128-8147 | MS.gene009203:intergenic | 40.0% | |
| ACTGAAATGGTGTATGACTC+GGG | + | 55388:10412-10431 | MS.gene009203:CDS | 40.0% | |
| ACTTAAGCGTCTATTTGGGA+AGG | + | 55388:8593-8612 | MS.gene009203:intron | 40.0% | |
| AGACTAGACAGGATAGGATT+AGG | - | 55388:10180-10199 | MS.gene009203:intergenic | 40.0% | |
| ATCTCAAGGAGGAACTTATG+TGG | + | 55388:7219-7238 | MS.gene009203:CDS | 40.0% | |
| ATGGTGATAAACTGCTTCCA+TGG | - | 55388:9267-9286 | MS.gene009203:intergenic | 40.0% | |
| CAGTGTTGTCATGCTAAGTA+TGG | + | 55388:7250-7269 | MS.gene009203:intron | 40.0% | |
| CCCAAGACCTTGGTTAAATT+AGG | + | 55388:6677-6696 | MS.gene009203:intron | 40.0% | |
| CTCGTCAATCCCAAATGATA+GGG | - | 55388:8127-8146 | MS.gene009203:intergenic | 40.0% | |
| GAGGAGAGTCAAGTTAAAAG+AGG | - | 55388:10028-10047 | MS.gene009203:intergenic | 40.0% | |
| GATCTATGCTACAATATGGG+AGG | - | 55388:6856-6875 | MS.gene009203:intergenic | 40.0% | |
| GCTGTCCGATAGAACTATTA+TGG | + | 55388:10296-10315 | MS.gene009203:intron | 40.0% | |
| GCTTCTATGGCTTATGTATC+TGG | + | 55388:7399-7418 | MS.gene009203:CDS | 40.0% | |
| GGTTGCATTAGGATTGTAAG+TGG | + | 55388:8274-8293 | MS.gene009203:intron | 40.0% | |
| TCCTTTCTATCCCTTCCTTA+GGG | - | 55388:8821-8840 | MS.gene009203:intergenic | 40.0% | |
| TCTCAAGGAGGAACTTATGT+GGG | + | 55388:7220-7239 | MS.gene009203:CDS | 40.0% | |
| TCTCTAATGTTTACCCTGCA+GGG | - | 55388:9325-9344 | MS.gene009203:intergenic | 40.0% | |
| TGAAGTCATCATTGTGTCAC+TGG | + | 55388:7531-7550 | MS.gene009203:intron | 40.0% | |
| TGACAGTATAGTCCCAAAGA+AGG | - | 55388:9759-9778 | MS.gene009203:intergenic | 40.0% | |
| TGGAAGCAGTTTATCACCAT+TGG | + | 55388:9267-9286 | MS.gene009203:intron | 40.0% | |
| TGTCAGATGCTATGACATTC+TGG | - | 55388:9191-9210 | MS.gene009203:intergenic | 40.0% | |
| TTCCTTTCTATCCCTTCCTT+AGG | - | 55388:8822-8841 | MS.gene009203:intergenic | 40.0% | |
| TTCTTGCTCAAGTTCACCAA+CGG | - | 55388:6897-6916 | MS.gene009203:intergenic | 40.0% | |
| TTTAACCAAGGTCTTGGGTT+CGG | - | 55388:6675-6694 | MS.gene009203:intergenic | 40.0% | |
| ! | AAATTGTTGTTGAGGGTCCA+AGG | + | 55388:7778-7797 | MS.gene009203:CDS | 40.0% |
| ! | AGGGAGTGAAATTGTTGTTG+AGG | + | 55388:7770-7789 | MS.gene009203:CDS | 40.0% |
| ! | ATTTGGGAAGGTGATTTTGG+AGG | + | 55388:8605-8624 | MS.gene009203:intron | 40.0% |
| ! | GGGAGTGAAATTGTTGTTGA+GGG | + | 55388:7771-7790 | MS.gene009203:CDS | 40.0% |
| ! | GTATTTTCAGTTCCGCAGTT+TGG | - | 55388:9734-9753 | MS.gene009203:intergenic | 40.0% |
| ! | TTTGGGAAGGTGATTTTGGA+GGG | + | 55388:8606-8625 | MS.gene009203:intron | 40.0% |
| !! | AAGGTGATTTTGGAGGGTTT+TGG | + | 55388:8612-8631 | MS.gene009203:intron | 40.0% |
| !! | ATGGTTGTTTTCCAGAGAGA+AGG | + | 55388:7750-7769 | MS.gene009203:intron | 40.0% |
| !! | TGGTTGTTTTCCAGAGAGAA+GGG | + | 55388:7751-7770 | MS.gene009203:intron | 40.0% |
| !!! | TGATTTTGGAGGGTTTTGGA+GGG | + | 55388:8616-8635 | MS.gene009203:intron | 40.0% |
| AAAGAGGTAGAGGAAGACCT+AGG | - | 55388:10012-10031 | MS.gene009203:intergenic | 45.0% | |
| AAAGCCACTGCAGATCAACA+AGG | + | 55388:6536-6555 | MS.gene009203:CDS | 45.0% | |
| AACCAGCTGTGGAACTGAAA+TGG | + | 55388:10399-10418 | MS.gene009203:intron | 45.0% | |
| AAGGAGGAACTTATGTGGGA+AGG | + | 55388:7224-7243 | MS.gene009203:CDS | 45.0% | |
| ACACCATTAGAGAGAGAGTG+GGG | - | 55388:10153-10172 | MS.gene009203:intergenic | 45.0% | |
| ACCCTAAGGAAGGGATAGAA+AGG | + | 55388:8817-8836 | MS.gene009203:intron | 45.0% | |
| CAATCCTAATGCAACCACAG+TGG | - | 55388:8270-8289 | MS.gene009203:intergenic | 45.0% | |
| CAATTTCACTCCCTTCTCTC+TGG | - | 55388:7764-7783 | MS.gene009203:intergenic | 45.0% | |
| CAGTATAGTCCCAAAGAAGG+AGG | - | 55388:9756-9775 | MS.gene009203:intergenic | 45.0% | |
| CCCAAACATACCCTAAGGAA+GGG | + | 55388:8808-8827 | MS.gene009203:intron | 45.0% | |
| CCCTTCCTTAGGGTATGTTT+GGG | - | 55388:8811-8830 | MS.gene009203:intergenic | 45.0% | |
| CGAGAGTAAAGTAAGCGTAG+TGG | - | 55388:10222-10241 | MS.gene009203:intergenic | 45.0% | |
| CGCTTACTTTACTCTCGTGT+TGG | + | 55388:10225-10244 | MS.gene009203:intron | 45.0% | |
| CTCTAATGTTTACCCTGCAG+GGG | - | 55388:9324-9343 | MS.gene009203:intergenic | 45.0% | |
| CTCTCTAATGTTTACCCTGC+AGG | - | 55388:9326-9345 | MS.gene009203:intergenic | 45.0% | |
| GACACCATTAGAGAGAGAGT+GGG | - | 55388:10154-10173 | MS.gene009203:intergenic | 45.0% | |
| GATACCTTGTTGATCTGCAG+TGG | - | 55388:6543-6562 | MS.gene009203:intergenic | 45.0% | |
| GATGAGTGGTAAGACTAGAC+AGG | - | 55388:10191-10210 | MS.gene009203:intergenic | 45.0% | |
| GCGAAAGTAGGAGTAATCTG+CGG | - | 55388:6514-6533 | MS.gene009203:intergenic | 45.0% | |
| GTGCAGCCTTCGAAGTAAAA+AGG | + | 55388:7800-7819 | MS.gene009203:CDS | 45.0% | |
| GTGGTAAGACTAGACAGGAT+AGG | - | 55388:10186-10205 | MS.gene009203:intergenic | 45.0% | |
| GTTGGACGACTCAAAATGAG+TGG | + | 55388:6626-6645 | MS.gene009203:intron | 45.0% | |
| TCCCAAACATACCCTAAGGA+AGG | + | 55388:8807-8826 | MS.gene009203:intron | 45.0% | |
| TCCCTTCCTTAGGGTATGTT+TGG | - | 55388:8812-8831 | MS.gene009203:intergenic | 45.0% | |
| TCCGTACCATACAACATTGC+CGG | + | 55388:10266-10285 | MS.gene009203:intron | 45.0% | |
| TCCTTAGGGTATGTTTGGGA+GGG | - | 55388:8807-8826 | MS.gene009203:intergenic | 45.0% | |
| TCTTCTTACCACGGCATCTA+CGG | + | 55388:10060-10079 | MS.gene009203:intron | 45.0% | |
| TGACACCATTAGAGAGAGAG+TGG | - | 55388:10155-10174 | MS.gene009203:intergenic | 45.0% | |
| TGTTGATCTGCAGTGGCTTT+AGG | - | 55388:6536-6555 | MS.gene009203:intergenic | 45.0% | |
| TGTTGTATGGTACGGAGTGT+TGG | - | 55388:10262-10281 | MS.gene009203:intergenic | 45.0% | |
| TTCCTTAGGGTATGTTTGGG+AGG | - | 55388:8808-8827 | MS.gene009203:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | 55388:9882-9901 | MS.gene009203:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | 55388:9881-9900 | MS.gene009203:intron | 45.0% |
| ! | GGGAATGCTGGAGATTTTGA+CGG | + | 55388:6806-6825 | MS.gene009203:intron | 45.0% |
| ! | GTTGTATGGTACGGAGTGTT+GGG | - | 55388:10261-10280 | MS.gene009203:intergenic | 45.0% |
| !! | GTGATTTTGGAGGGTTTTGG+AGG | + | 55388:8615-8634 | MS.gene009203:intron | 45.0% |
| !!! | TGATTATTTAAATTTTAAAA+GGG | + | 55388:9701-9720 | MS.gene009203:intron | 5.0% |
| AGTAAGCGTAGTGGTTGCGT+TGG | - | 55388:10213-10232 | MS.gene009203:intergenic | 50.0% | |
| AGTTCTATCGGACAGCAGTC+AGG | - | 55388:10292-10311 | MS.gene009203:intergenic | 50.0% | |
| CACCATTAGAGAGAGAGTGG+GGG | - | 55388:10152-10171 | MS.gene009203:intergenic | 50.0% | |
| CACCATTTCAGTTCCACAGC+TGG | - | 55388:10404-10423 | MS.gene009203:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | 55388:9883-9902 | MS.gene009203:intergenic | 50.0% | |
| CCTTAGGGTATGTTTGGGAG+GGG | - | 55388:8806-8825 | MS.gene009203:intergenic | 50.0% | |
| CTAATGCAACCACAGTGGCT+GGG | - | 55388:8265-8284 | MS.gene009203:intergenic | 50.0% | |
| CTTAGGGTATGTTTGGGAGG+GGG | - | 55388:8805-8824 | MS.gene009203:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | 55388:9886-9905 | MS.gene009203:intron | 50.0% | |
| CTTCTTACCACGGCATCTAC+GGG | + | 55388:10061-10080 | MS.gene009203:intron | 50.0% | |
| GCCGGCAATGTTGTATGGTA+CGG | - | 55388:10270-10289 | MS.gene009203:intergenic | 50.0% | |
| TACCCCCACTCTCTCTCTAA+TGG | + | 55388:10147-10166 | MS.gene009203:intron | 50.0% | |
| TAGTGGTTGCGTTGGATGAG+TGG | - | 55388:10205-10224 | MS.gene009203:intergenic | 50.0% | |
| TCAGTTCCGCAGTTTGGACA+GGG | - | 55388:9728-9747 | MS.gene009203:intergenic | 50.0% | |
| TTACTTCGAAGGCTGCACCT+TGG | - | 55388:7798-7817 | MS.gene009203:intergenic | 50.0% | |
| TTAGGGTATGTTTGGGAGGG+GGG | - | 55388:8804-8823 | MS.gene009203:intergenic | 50.0% | |
| TTCAGTTCCGCAGTTTGGAC+AGG | - | 55388:9729-9748 | MS.gene009203:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | 55388:9880-9899 | MS.gene009203:intron | 50.0% |
| ! | TATGTTTGGGAGGGGGGTTT+TGG | - | 55388:8798-8817 | MS.gene009203:intergenic | 50.0% |
| !! | AGGAGGGGGTGTTAAAGTGA+AGG | - | 55388:6402-6421 | MS.gene009203:intergenic | 50.0% |
| !! | CAGTGGCTTTAGGCGAAAGT+AGG | - | 55388:6526-6545 | MS.gene009203:intergenic | 50.0% |
| AAGGGTCCCTGTCCAAACTG+CGG | + | 55388:9719-9738 | MS.gene009203:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | 55388:9894-9913 | MS.gene009203:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | 55388:9895-9914 | MS.gene009203:intergenic | 55.0% | |
| CAAGTCCGAACCCAAGACCT+TGG | + | 55388:6667-6686 | MS.gene009203:intron | 55.0% | |
| CCAGCCACTGTGGTTGCATT+AGG | + | 55388:8263-8282 | MS.gene009203:CDS | 55.0% | |
| CCCCTCCCAAACATACCCTA+AGG | + | 55388:8803-8822 | MS.gene009203:intron | 55.0% | |
| CCTAATGCAACCACAGTGGC+TGG | - | 55388:8266-8285 | MS.gene009203:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | 55388:9888-9907 | MS.gene009203:intergenic | 55.0% | |
| GGATTGTTGAGTGCAGCTGC+CGG | + | 55388:9522-9541 | MS.gene009203:intron | 55.0% | |
| GTAGGAGTAATCTGCGGCGA+AGG | - | 55388:6508-6527 | MS.gene009203:intergenic | 55.0% | |
| GTCAGGCCGGCAATGTTGTA+TGG | - | 55388:10275-10294 | MS.gene009203:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | 55388:9894-9913 | MS.gene009203:intergenic | 55.0% | |
| ! | GGAGTTTGGGGTGCAGAACA+TGG | - | 55388:6425-6444 | MS.gene009203:intergenic | 55.0% |
| ! | GTTTGGGGTGCAGAACATGG+AGG | - | 55388:6422-6441 | MS.gene009203:intergenic | 55.0% |
| !! | GTATGGTACGGAGTGTTGGG+CGG | - | 55388:10258-10277 | MS.gene009203:intergenic | 55.0% |
| !!! | TTTGGGAGGGGGGTTTTGGA+GGG | - | 55388:8794-8813 | MS.gene009203:intergenic | 55.0% |
| CTATCGGACAGCAGTCAGGC+CGG | - | 55388:10288-10307 | MS.gene009203:intergenic | 60.0% | |
| GAGAAGACCCGTAGATGCCG+TGG | - | 55388:10071-10090 | MS.gene009203:intergenic | 60.0% | |
| GGGGTGCAGAACATGGAGGA+GGG | - | 55388:6418-6437 | MS.gene009203:intergenic | 60.0% | |
| GGGTGCAGAACATGGAGGAG+GGG | - | 55388:6417-6436 | MS.gene009203:intergenic | 60.0% | |
| GGTGCAGAACATGGAGGAGG+GGG | - | 55388:6416-6435 | MS.gene009203:intergenic | 60.0% | |
| TGGGGTGCAGAACATGGAGG+AGG | - | 55388:6419-6438 | MS.gene009203:intergenic | 60.0% | |
| ! | ACGTGGCGGGAGTTGAAGTG+AGG | - | 55388:6482-6501 | MS.gene009203:intergenic | 60.0% |
| ! | ATCTGCGGCGAAGGCATACG+TGG | - | 55388:6499-6518 | MS.gene009203:intergenic | 60.0% |
| !! | GTTTGGGAGGGGGGTTTTGG+AGG | - | 55388:8795-8814 | MS.gene009203:intergenic | 60.0% |
| !!! | AGGGGGGTTTTGGAGGGAAG+GGG | - | 55388:8788-8807 | MS.gene009203:intergenic | 60.0% |
| !!! | GAGGGGGGTTTTGGAGGGAA+GGG | - | 55388:8789-8808 | MS.gene009203:intergenic | 60.0% |
| CAGTGGCTGGGACGTTCAGC+AGG | - | 55388:8253-8272 | MS.gene009203:intergenic | 65.0% | |
| GCTGAACGTCCCAGCCACTG+TGG | + | 55388:8253-8272 | MS.gene009203:CDS | 65.0% | |
| ! | TGCGGCGAAGGCATACGTGG+CGG | - | 55388:6496-6515 | MS.gene009203:intergenic | 65.0% |
| !!! | GGAGGGGGGTTTTGGAGGGA+AGG | - | 55388:8790-8809 | MS.gene009203:intergenic | 65.0% |
| !!! | GGGGTTTTGGAGGGAAGGGG+AGG | - | 55388:8785-8804 | MS.gene009203:intergenic | 65.0% |
| ! | GCGGCGAAGGCATACGTGGC+GGG | - | 55388:6495-6514 | MS.gene009203:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 55388 | gene | 6377 | 10462 | 6377 | ID=MS.gene009203 |
| 55388 | mRNA | 6377 | 10462 | 6377 | ID=MS.gene009203.t1;Parent=MS.gene009203 |
| 55388 | exon | 6377 | 6557 | 6377 | ID=MS.gene009203.t1.exon1;Parent=MS.gene009203.t1 |
| 55388 | CDS | 6377 | 6557 | 6377 | ID=cds.MS.gene009203.t1;Parent=MS.gene009203.t1 |
| 55388 | exon | 6807 | 6934 | 6807 | ID=MS.gene009203.t1.exon2;Parent=MS.gene009203.t1 |
| 55388 | CDS | 6807 | 6934 | 6807 | ID=cds.MS.gene009203.t1;Parent=MS.gene009203.t1 |
| 55388 | exon | 7170 | 7266 | 7170 | ID=MS.gene009203.t1.exon3;Parent=MS.gene009203.t1 |
| 55388 | CDS | 7170 | 7266 | 7170 | ID=cds.MS.gene009203.t1;Parent=MS.gene009203.t1 |
| 55388 | exon | 7373 | 7473 | 7373 | ID=MS.gene009203.t1.exon4;Parent=MS.gene009203.t1 |
| 55388 | CDS | 7373 | 7473 | 7373 | ID=cds.MS.gene009203.t1;Parent=MS.gene009203.t1 |
| 55388 | exon | 7765 | 7821 | 7765 | ID=MS.gene009203.t1.exon5;Parent=MS.gene009203.t1 |
| 55388 | CDS | 7765 | 7821 | 7765 | ID=cds.MS.gene009203.t1;Parent=MS.gene009203.t1 |
| 55388 | exon | 8212 | 8288 | 8212 | ID=MS.gene009203.t1.exon6;Parent=MS.gene009203.t1 |
| 55388 | CDS | 8212 | 8288 | 8212 | ID=cds.MS.gene009203.t1;Parent=MS.gene009203.t1 |
| 55388 | exon | 9075 | 9126 | 9075 | ID=MS.gene009203.t1.exon7;Parent=MS.gene009203.t1 |
| 55388 | CDS | 9075 | 9126 | 9075 | ID=cds.MS.gene009203.t1;Parent=MS.gene009203.t1 |
| 55388 | exon | 9538 | 9648 | 9538 | ID=MS.gene009203.t1.exon8;Parent=MS.gene009203.t1 |
| 55388 | CDS | 9538 | 9648 | 9538 | ID=cds.MS.gene009203.t1;Parent=MS.gene009203.t1 |
| 55388 | exon | 9722 | 9819 | 9722 | ID=MS.gene009203.t1.exon9;Parent=MS.gene009203.t1 |
| 55388 | CDS | 9722 | 9819 | 9722 | ID=cds.MS.gene009203.t1;Parent=MS.gene009203.t1 |
| 55388 | exon | 10405 | 10462 | 10405 | ID=MS.gene009203.t1.exon10;Parent=MS.gene009203.t1 |
| 55388 | CDS | 10405 | 10462 | 10405 | ID=cds.MS.gene009203.t1;Parent=MS.gene009203.t1 |
| Gene Sequence |
| Protein sequence |
