AlfalfaGEDB | MS.gene71059

M. sativa cultivar XinJiangDaYe / MS.gene71059

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71059.t1	RHN63325.1	96.9	319	10	0	1	319	51	369	5.00E-151	543.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71059.t1	Q8H112	75.9	323	65	5	5	319	3	320	6.9e-109	395.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71059.t1	A0A072V0M0	96.9	319	10	0	1	319	1	319	3.6e-151	543.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene71059	0.842266	2.87E-58	-1.69E-46
MS.gene049171	MS.gene71059	0.929071	1.17E-92	-1.69E-46
MS.gene049173	MS.gene71059	0.834806	2.42E-56	-1.69E-46
MS.gene049217	MS.gene71059	0.878892	1.94E-69	-1.69E-46
MS.gene049222	MS.gene71059	0.923887	1.47E-89	-1.69E-46
MS.gene049232	MS.gene71059	0.899378	2.10E-77	-1.69E-46
MS.gene049285	MS.gene71059	0.932765	5.20E-95	-1.69E-46
MS.gene049312	MS.gene71059	-0.807083	6.01E-50	-1.69E-46
MS.gene049320	MS.gene71059	0.922505	9.01E-89	-1.69E-46
MS.gene04939	MS.gene71059	0.832918	7.19E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene009203	MS.gene71059	PPI
MS.gene011450	MS.gene71059	PPI
MS.gene038660	MS.gene71059	PPI
MS.gene69468	MS.gene71059	PPI
MS.gene71059	MS.gene69468	PPI
MS.gene71059	MS.gene033404	PPI
MS.gene71059	MS.gene009203	PPI
MS.gene71059	MS.gene37223	PPI
MS.gene71059	MS.gene011450	PPI
MS.gene71059	MS.gene62822	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71059.t1	MTR_4g102440	96.552	319	11	0	1	319	1	319	0.0	632
MS.gene71059.t1	MTR_5g011220	78.671	286	56	3	36	319	29	311	7.33e-165	461

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71059.t1	AT4G22890	81.429	280	47	3	40	319	46	320	2.93e-167	468
MS.gene71059.t1	AT4G22890	81.429	280	47	3	40	319	46	320	2.93e-167	468
MS.gene71059.t1	AT4G22890	81.071	280	45	3	40	319	46	317	1.85e-166	466
MS.gene71059.t1	AT4G22890	80.714	280	47	3	40	319	46	318	2.40e-165	463
MS.gene71059.t1	AT4G11960	75.159	314	72	4	7	319	1	309	1.59e-161	453
MS.gene71059.t1	AT4G11960	84.127	252	39	1	68	319	42	292	3.95e-156	439
MS.gene71059.t1	AT4G22890	81.226	261	44	3	40	300	46	301	1.58e-153	432
MS.gene71059.t1	AT5G59400	29.474	190	102	7	139	302	75	258	1.42e-11	64.7

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Find 73 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAACTAAAAGGCTC+CGG	0.563124	8.4:-38186683	None:intergenic
AAAATTTCTTGAAGCTTCTA+TGG	0.224918	8.4:+38184528	MS.gene71059:CDS
AAAGCCACTGCAGATCAACA+AGG	0.689088	8.4:+38183678	MS.gene71059:CDS
AAATTGTTGTTGAGGGTCCA+AGG	0.606961	8.4:+38184920	MS.gene71059:CDS
AACCAGCTGTGGAACTGAAA+TGG	0.521644	8.4:+38187541	MS.gene71059:intron
AACTGAAATGGTGTATGACT+CGG	0.590231	8.4:+38187553	MS.gene71059:CDS
AAGGAGGAACTTATGTGGGA+AGG	0.615460	8.4:+38184366	MS.gene71059:CDS
AAGGGTCCCTGTCCAAACTG+CGG	0.678881	8.4:+38186861	MS.gene71059:intron
AATCACAAAATCTTTGATAA+TGG	0.309190	8.4:-38186762	None:intergenic
AATGGAATAAAGGGAGTTTG+GGG	0.668538	8.4:-38183576	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAGGCTTAGATGGTTT+GGG	-	chr8.4:38187244-38187263	None:intergenic	30.0%
AAAATGAAACTAAAAGGCTC+CGG	-	chr8.4:38186686-38186705	None:intergenic	30.0%
ACTATACTGTCAATTTCAAG+TGG	+	chr8.4:38186909-38186928	MS.gene71059:CDS	30.0%
ACTTCTGCCAAATATATGAT+TGG	+	chr8.4:38185567-38185586	MS.gene71059:intron	30.0%
AGTAGAATGTTGACATCAAA+TGG	-	chr8.4:38185520-38185539	None:intergenic	30.0%
ATAGAGCTAGATATACAATG+AGG	-	chr8.4:38186730-38186749	None:intergenic	30.0%
ATCATATATTTGGCAGAAGT+AGG	-	chr8.4:38185567-38185586	None:intergenic	30.0%
ATCATCAAATGGTAATCCAT+TGG	-	chr8.4:38186498-38186517	None:intergenic	30.0%
CAAATCCAGTTATATCATCA+AGG	-	chr8.4:38186229-38186248	None:intergenic	30.0%
CAAGTAGTGACAAGAAATAT+AGG	+	chr8.4:38185181-38185200	MS.gene71059:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	38183519	38187604	38183519	ID=MS.gene71059
chr8.4	mRNA	38183519	38187604	38183519	ID=MS.gene71059.t1;Parent=MS.gene71059
chr8.4	exon	38183519	38183699	38183519	ID=MS.gene71059.t1.exon1;Parent=MS.gene71059.t1
chr8.4	CDS	38183519	38183699	38183519	ID=cds.MS.gene71059.t1;Parent=MS.gene71059.t1
chr8.4	exon	38183949	38184076	38183949	ID=MS.gene71059.t1.exon2;Parent=MS.gene71059.t1
chr8.4	CDS	38183949	38184076	38183949	ID=cds.MS.gene71059.t1;Parent=MS.gene71059.t1
chr8.4	exon	38184312	38184408	38184312	ID=MS.gene71059.t1.exon3;Parent=MS.gene71059.t1
chr8.4	CDS	38184312	38184408	38184312	ID=cds.MS.gene71059.t1;Parent=MS.gene71059.t1
chr8.4	exon	38184515	38184615	38184515	ID=MS.gene71059.t1.exon4;Parent=MS.gene71059.t1
chr8.4	CDS	38184515	38184615	38184515	ID=cds.MS.gene71059.t1;Parent=MS.gene71059.t1
chr8.4	exon	38184907	38184963	38184907	ID=MS.gene71059.t1.exon5;Parent=MS.gene71059.t1
chr8.4	CDS	38184907	38184963	38184907	ID=cds.MS.gene71059.t1;Parent=MS.gene71059.t1
chr8.4	exon	38185354	38185430	38185354	ID=MS.gene71059.t1.exon6;Parent=MS.gene71059.t1
chr8.4	CDS	38185354	38185430	38185354	ID=cds.MS.gene71059.t1;Parent=MS.gene71059.t1
chr8.4	exon	38186217	38186268	38186217	ID=MS.gene71059.t1.exon7;Parent=MS.gene71059.t1
chr8.4	CDS	38186217	38186268	38186217	ID=cds.MS.gene71059.t1;Parent=MS.gene71059.t1
chr8.4	exon	38186680	38186790	38186680	ID=MS.gene71059.t1.exon8;Parent=MS.gene71059.t1
chr8.4	CDS	38186680	38186790	38186680	ID=cds.MS.gene71059.t1;Parent=MS.gene71059.t1
chr8.4	exon	38186864	38186961	38186864	ID=MS.gene71059.t1.exon9;Parent=MS.gene71059.t1
chr8.4	CDS	38186864	38186961	38186864	ID=cds.MS.gene71059.t1;Parent=MS.gene71059.t1
chr8.4	exon	38187547	38187604	38187547	ID=MS.gene71059.t1.exon10;Parent=MS.gene71059.t1
chr8.4	CDS	38187547	38187604	38187547	ID=cds.MS.gene71059.t1;Parent=MS.gene71059.t1

Gene Sequence

>MS.gene71059

ATGTTCACTGCTACCAAAGTAGCCTTCACTTTAACACCCCCTCCTCCATGTTCTGCACCCCAAACTCCCTTTATTCCATTCTCTTTTTCTTCTGTTTCTCGTCCTCACTTCAACTCCCGCCACGTATGCCTTCGCCGCAGATTACTCCTACTTTCGCCTAAAGCCACTGCAGATCAACAAGGTATCACTTTAATCAATTTTTCATTTTATTTTGTGTGTAAATTGGATATTATCGTTTATTTGAGTCTTGTTGGACGACTCAAAATGAGTGGCAAACTCATTTTAGAGTGCAAGTCCGAACCCAAGACCTTGGTTAAATTAGGAGAGAACCATGTCATTTTATCTATTTTATCAATGTGCTCTTGAGTATTTATTTCATTTTCTAACTACACCTCCACTTTTTACTTAATACTTATCATTTTTCTTTCAGGGAATGCTGGAGATTTTGACGGAGATGCTGTTATTGATACTAATGTCCTCCCATATTGTAGCATAGATCAAAAAAAGGAGAAGAAATCCGTTGGTGAACTTGAGCAAGAATTTCTTCAAGCACTCCAAGTATATATCCCACCAAACTTGTTTCTTATTTTCTTCCATTAAGTCTCTCTTTCGATAAACAGCTTAATTATTTTCGTATAATCTGTATGGAGAGTTTATGAAAATAAGCTCAAAACAACTTGTGTACATGTCATAAGCTATTTTCATAAGTGCTTATGACCGTTGATACTGTTCAACACAACTTTTGGATATCTGGACTAAAATTTGTGGTTGTTTTTTTTGTTTTATTTAACAGTCATTCTATTATGAGGGAAAGGCTATTATGTCAAATGAAGAATTTGATAATCTCAAGGAGGAACTTATGTGGGAAGGAAGCAGTGTTGTCATGCTAAGTATGGTGTAATTTTCTCTGTTATCACTCTTATATATATGAATAATGGATTAGTGTTAATATGTAAGTATATTTTTGTAAGTCTTTGTTGAATTACTGTTGTGTAGGTTCGGATGAACAAAAATTTCTTGAAGCTTCTATGGCTTATGTATCTGGAAATCCAATTTTGAGCGACAAAGAGTATGATAAGTTGAAACTGAATCTAAAGGTTTGCTATTTGTCTATTTTGACTTCATTCATGAAAAGTCTTCTGTGTTTTGTGGTGTGAAGTCATCATTGTGTCACTGGTAATTAAAGGAAATAAGATGTAGTACTATATCATTTGGACCAAATTAAAGGTTAGATCAACTAGTTACTAGAGTTCATGTAATTGATATTAAGTATCAGTTCTATTTGTTATACTGGGCACAATTTTTTTCGAATGCAGTTGTAATTGATTTAGTAGTTTTGTATCTTCCTCTTTCTGGCATAATTTACTGAACTCATGGTTGTTTTCCAGAGAGAAGGGAGTGAAATTGTTGTTGAGGGTCCAAGGTGCAGCCTTCGAAGTAAAAAGGTAAGTGTTGATATGTAATCTATATTCTTATTTCAGTTTTGGTAGTTAGTCGTAGAATGTAGTTATATAGAGTAGTTTTCTTGATTAAGTCATTCTTGCAATGCTGAATAATAAATACAGGAGTAAAATTTCTTGTTTCGTTATTAAGAGATTTGTTTATATTTGAGATTGGGATAAAACCTACTAATATCAGTCATATGACTCATATTACAACTCACAAGTAGTGACAAGAAATATAGGAGGACCATTTCATGTCAAATAAAATGCTTCTTTATTTACTAGAATTCAACTTCAGGATTTTACCCTATCATTTGGGATTGACGAGTATTTCAATGAGTGCATCTTTCTGTGTTCAATCTTTATTCTATACTTATTACAGTCTTTTTATAGGTTTACAGTGACCTGTCTGTTGACTATTTAAAGATGTTCCTGCTGAACGTCCCAGCCACTGTGGTTGCATTAGGATTGTAAGTGGCTTTTGCCTGTTTCCCTACATACGTTTTATCATTTATATTGACTTGTGTTGATTTATAATGGTGAAACCTTTGATTAACCATTTGATGTCAACATTCTACTGTATTGCAAGTAAAAATTTTGATTCCTACTTCTGCCAAATATATGATTGGTCTCAGAAAGTGAAAATAGAACATATGGTGAAACTGAAACATCTAAAACAATGTTGTAATACACACTTGACATAATGTATTTATGTTTCATTCATATATTTGATTTCGAGGATTGAATAATATCTTACTCATGAGTATGACTATGACTTAAGCGTCTATTTGGGAAGGTGATTTTGGAGGGTTTTGGAGGGATAAGTTTATATTTTGATATGCATTTGAGATTTTTTTTAAATTGAAAGTATACCATGATATATGATCATATAACAATTCAATCACACTTTTTTCATTTTTAGAAACATTTTGTTGCTTGCGTAATTTGGAAAAGAGAAACAAGCCTCCCCTTCCCTCCAAAACCCCCCTCCCAAACATACCCTAAGGAAGGGATAGAAAGGAATGCAAGAAATGAAAAATATATGCTGATTTTTACATATCTATTTATCTACGACCTGATGTCATATTCTACATGCTCCTACATATTTTATAATCTCCATATTAGTATCCAATTTTTGTCATCCATCTTTCTTAAATCAAAGGTTTCATCAGAAATGATGAATGAAAGTACATTTTTGCTTTAGGTCTTGACATTTTTTGCCTTTAACTTTTAATTCCACTCCTGTGATCTGTTAGATTCTTCTTCCTTGATGATATAACTGGATTTGAGATCACTTATTTGCTAGAGGTATGTTCTCTTTTCACTTGTACCTAGAATTGCATACTTATTATTTGGGTGTAATTTGATTCCAGAATGTCATAGCATCTGACAGTAGTTGCATTTTTAAGGTCCTTTCCTTTCTAACATTTTATTGCCTTTTAAATCCATGGAAGCAGTTTATCACCATTGGAGTTTTTATATCTTCTAGATGAAAAAAATATCCCCTGCAGGGTAAACATTAGAGAGCAAAATGCCAATGGATTACCATTTGATGATGGAAAAAAAACCAGCGAATCATATTTTATAATAAAGTTATTAAAGTACAAAGTAACATGATAACAGTCCATAGATTTGCAAAACTCATCCAATTATAATGAAAAAGATATTACACTTCATGCTACTATAACAGATATTGATATTTTGGATTGTTGAGTGCAGCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCGGCTGTTCCCCTCATTGTATATCTAGCTCTATCACTAACAAGGGCCATTATCAAAGATTTTGTGATTTTAAAGGTATGAGTTTTTTAACACGATTTTGTAGGTTATATTGAACTGCTGCATACACTGATTATTTAAATTTTAAAAGGGTCCCTGTCCAAACTGCGGAACTGAAAATACCTCCTTCTTTGGGACTATACTGTCAATTTCAAGTGGTGGTTCCAACAACAAAGTCAAATGCTCTGAGTAAGTACAAAAATACTGCTGACTAATTAACTATTATTGTTTCAACAACAACAACAACAACCAAGCCTTATCCCACTAAGTGGGGTCGGCTACATGGATCAAATGACGCCATAATGTTCTATCATAAACCAAATTTGGATCCAACTCATTGACCTCTAAATCTTTTCTAATGGTTTCTCTAATAGTTTTCCTAGGTCTTCCTCTACCTCTTTTAACTTGACTCTCCTCCATTTGATCTACTCTTCTTACCACGGCATCTACGGGTCTTCTCTCTACATGCCCAAACCATCTAAGCCTATTTTCTACCAACTTTTCTACTATAGGTGCTACCCCCACTCTCTCTCTAATGGTGTCATTCCTAATCCTATCCTGTCTAGTCTTACCACTCATCCAACGCAACCACTACGCTTACTTTACTCTCGTGTTGGCTCTTAACCGCCCAACACTCCGTACCATACAACATTGCCGGCCTGACTGCTGTCCGATAGAACTATTATGGTTTCAAATGATTCATATTTAATGCTTAAACTAATTTAATTTATGATATAACATCAATTTAACAATCGAAATTAACATTTGAACCAGCTGTGGAACTGAAATGGTGTATGACTCGGGTACAAGATTGATTACATTGCCAGAATGA

Protein sequence

>MS.gene71059.t1

MFTATKVAFTLTPPPPCSAPQTPFIPFSFSSVSRPHFNSRHVCLRRRLLLLSPKATADQQGNAGDFDGDAVIDTNVLPYCSIDQKKEKKSVGELEQEFLQALQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGNPILSDKEYDKLKLNLKREGSEIVVEGPRCSLRSKKVYSDLSVDYLKMFLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLALSLTRAIIKDFVILKGPCPNCGTENTSFFGTILSISSGGSNNKVKCSDCGTEMVYDSGTRLITLPE