Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009452.t1 | XP_003598260.1 | 96.7 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 2.10E-75 | 291.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009452.t1 | Q2HJI3 | 27.6 | 105 | 73 | 2 | 42 | 143 | 28 | 132 | 7.3e-08 | 58.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009452.t1 | G7IYL4 | 96.7 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 1.5e-75 | 291.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009452 | MS.gene51624 | PPI |
| MS.gene009452 | MS.gene84381 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009452.t1 | MTR_3g009130 | 96.711 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 1.29e-108 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009452.t1 | AT2G31725 | 62.416 | 149 | 55 | 1 | 1 | 148 | 1 | 149 | 8.79e-71 | 210 |
| MS.gene009452.t1 | AT1G05730 | 60.403 | 149 | 58 | 1 | 1 | 148 | 1 | 149 | 3.89e-68 | 203 |
| MS.gene009452.t1 | AT2G43720 | 51.389 | 144 | 69 | 1 | 6 | 148 | 4 | 147 | 2.76e-55 | 171 |
| MS.gene009452.t1 | AT1G05730 | 59.259 | 108 | 43 | 1 | 42 | 148 | 10 | 117 | 4.88e-45 | 144 |
| MS.gene009452.t1 | AT1G05740 | 45.652 | 138 | 62 | 2 | 1 | 125 | 1 | 138 | 1.43e-41 | 135 |
| MS.gene009452.t1 | AT2G43720 | 50.926 | 108 | 52 | 1 | 42 | 148 | 1 | 108 | 2.56e-39 | 129 |
Find 24 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAGATGGCAAAGTTTC+AGG | 0.195239 | 3.2:+3280098 | MS.gene009452:CDS |
| CTCATATGCACATTTAAAAT+AGG | 0.309655 | 3.2:-3279986 | None:intergenic |
| AATTAGGTCAACAGAGAATT+AGG | 0.348786 | 3.2:+3279409 | MS.gene009452:CDS |
| GCAGCAGCTGAAGCGCAATT+AGG | 0.389975 | 3.2:+3279393 | MS.gene009452:CDS |
| TAATTGACATGGTCTTGAAC+AGG | 0.399803 | 3.2:-3279477 | None:intergenic |
| TTCTAGGAAGAACTGTTGTC+TGG | 0.450400 | 3.2:-3283302 | None:intergenic |
| TCATAGCTCCAGGTTTCTGT+TGG | 0.458233 | 3.2:-3283187 | None:intergenic |
| AACAAGTTGAAAGCTTCCTT+TGG | 0.460762 | 3.2:+3283275 | MS.gene009452:CDS |
| GAAGTTGAATAGATCTATGA+TGG | 0.466964 | 3.2:+3283133 | MS.gene009452:CDS |
| ATCATATCATTCATAGCTCC+AGG | 0.479620 | 3.2:-3283197 | None:intergenic |
| TCAAAGCTCCAACAGAAACC+TGG | 0.503368 | 3.2:+3283179 | MS.gene009452:CDS |
| GGTTTGTCAAGACAAGTATG+AGG | 0.511683 | 3.2:+3283154 | MS.gene009452:CDS |
| GACTGTTGCACATTAGAAAG+AGG | 0.512334 | 3.2:-3280069 | None:intergenic |
| CCATGTCAATTATACTCTCC+AGG | 0.522500 | 3.2:+3279488 | MS.gene009452:CDS |
| TTGAATCGCTTCGTCAGCAC+AGG | 0.525639 | 3.2:-3283222 | None:intergenic |
| CTTTGATAGAAGCAGAAAGC+AGG | 0.531953 | 3.2:+3280011 | MS.gene009452:CDS |
| TTCAACTTGTTCGTAAGAAG+CGG | 0.544894 | 3.2:-3283263 | None:intergenic |
| GAGAATTAGGCAGAAACTTG+AGG | 0.580267 | 3.2:+3279422 | MS.gene009452:CDS |
| AATTGACATGGTCTTGAACA+GGG | 0.588865 | 3.2:-3279476 | None:intergenic |
| ACAGTCATTTGAAAATGAGA+TGG | 0.593900 | 3.2:+3280086 | MS.gene009452:CDS |
| CCTGGAGAGTATAATTGACA+TGG | 0.606570 | 3.2:-3279488 | None:intergenic |
| ATTGACATGGTCTTGAACAG+GGG | 0.619900 | 3.2:-3279475 | None:intergenic |
| ACTGTTGTCTGGAATGCCAA+AGG | 0.633485 | 3.2:-3283291 | None:intergenic |
| GTTTGTCAAGACAAGTATGA+GGG | 0.640452 | 3.2:+3283155 | MS.gene009452:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGAATCAAAATAAAAA+AGG | - | chr3.2:3279709-3279728 | None:intergenic | 10.0% |
| !!! | TTTGAAATTTTAATATAGAT+AGG | + | chr3.2:3279862-3279881 | MS.gene009452:intron | 10.0% |
| !! | AAATTCTATTTATCAGTAAA+AGG | - | chr3.2:3279924-3279943 | None:intergenic | 15.0% |
| !! | AATTCTATTTATCAGTAAAA+GGG | - | chr3.2:3279923-3279942 | None:intergenic | 15.0% |
| !! | CAAGGTATAAATAAATAATT+TGG | - | chr3.2:3283002-3283021 | None:intergenic | 15.0% |
| !! | TCAAAAGTTAAATTAATACA+AGG | - | chr3.2:3283020-3283039 | None:intergenic | 15.0% |
| !!! | AAATTAATTTTCTATGATGT+GGG | + | chr3.2:3282229-3282248 | MS.gene009452:intron | 15.0% |
| !!! | TATTAAAATTTCAAAGCATT+TGG | - | chr3.2:3279857-3279876 | None:intergenic | 15.0% |
| !!! | TTTATAATTCTTGGTTTTAA+AGG | + | chr3.2:3279800-3279819 | MS.gene009452:intron | 15.0% |
| !! | AAAAAATTCTTAAGTTTGAG+TGG | + | chr3.2:3281173-3281192 | MS.gene009452:intron | 20.0% |
| !! | AAACCATTTAGAAAGATTAA+GGG | - | chr3.2:3280853-3280872 | None:intergenic | 20.0% |
| !! | AATTAAAAGTAGGATGAAAA+TGG | - | chr3.2:3281227-3281246 | None:intergenic | 20.0% |
| !! | CACATCATAGAAAATTAATT+TGG | - | chr3.2:3282230-3282249 | None:intergenic | 20.0% |
| !! | GAAATGATTAAGATAGAAAA+AGG | + | chr3.2:3282137-3282156 | MS.gene009452:intron | 20.0% |
| !! | GAATAAGCGTAATAAATTAT+AGG | - | chr3.2:3282918-3282937 | None:intergenic | 20.0% |
| !! | TAAACCATTTAGAAAGATTA+AGG | - | chr3.2:3280854-3280873 | None:intergenic | 20.0% |
| !! | TAGAATCAAATTAAAAGAAG+TGG | - | chr3.2:3280203-3280222 | None:intergenic | 20.0% |
| !! | TCTTTCATTGTAATATTGAA+TGG | + | chr3.2:3279589-3279608 | MS.gene009452:intron | 20.0% |
| !! | TGAATCAAAATAAAAAAGGA+AGG | - | chr3.2:3279705-3279724 | None:intergenic | 20.0% |
| !! | TTGCATATAATGGTAATATT+CGG | + | chr3.2:3279893-3279912 | MS.gene009452:intron | 20.0% |
| !!! | AAATTAAGTGTTGTAGAAAA+CGG | - | chr3.2:3282389-3282408 | None:intergenic | 20.0% |
| !!! | ACACATTGTTTTTTATAATG+TGG | - | chr3.2:3282183-3282202 | None:intergenic | 20.0% |
| !!! | AGATCTTTTTACATGTTTTT+GGG | + | chr3.2:3282203-3282222 | MS.gene009452:intron | 20.0% |
| !!! | ATAAACTCATGTCATTTATT+TGG | + | chr3.2:3280628-3280647 | MS.gene009452:intron | 20.0% |
| !!! | CAAATTAATTTTCTATGATG+TGG | + | chr3.2:3282228-3282247 | MS.gene009452:intron | 20.0% |
| !!! | GCTTTCAATTTTATAGAATA+GGG | + | chr3.2:3280411-3280430 | MS.gene009452:intron | 20.0% |
| !!! | GTAATATTGAATGGTTTTAT+TGG | + | chr3.2:3279598-3279617 | MS.gene009452:intron | 20.0% |
| !!! | TAGATCTTTTTACATGTTTT+TGG | + | chr3.2:3282202-3282221 | MS.gene009452:intron | 20.0% |
| !!! | TGCTTTCAATTTTATAGAAT+AGG | + | chr3.2:3280410-3280429 | MS.gene009452:intron | 20.0% |
| !!! | TGTTTTTTATAATGTGGAAA+AGG | - | chr3.2:3282177-3282196 | None:intergenic | 20.0% |
| !!! | TTCATAAATTTTTCAGTAGT+TGG | + | chr3.2:3282417-3282436 | MS.gene009452:intron | 20.0% |
| ! | AGAAACATGGTGTATATAAT+AGG | + | chr3.2:3280731-3280750 | MS.gene009452:intron | 25.0% |
| ! | AGGAACATATAATACATTCA+TGG | - | chr3.2:3281890-3281909 | None:intergenic | 25.0% |
| ! | AGTTACAAGAAAACCAAAAA+AGG | - | chr3.2:3281685-3281704 | None:intergenic | 25.0% |
| ! | ATATATGCATAAAAAAGCCA+TGG | - | chr3.2:3282602-3282621 | None:intergenic | 25.0% |
| ! | ATCAGAGAATATATCTATTG+AGG | - | chr3.2:3282347-3282366 | None:intergenic | 25.0% |
| ! | ATTACAGTCTCAATTGTATT+CGG | + | chr3.2:3282502-3282521 | MS.gene009452:intron | 25.0% |
| ! | ATTCATAGTACTTAACATTG+TGG | + | chr3.2:3281067-3281086 | MS.gene009452:intron | 25.0% |
| ! | CAATCAAACAATCAACAATA+CGG | - | chr3.2:3279952-3279971 | None:intergenic | 25.0% |
| ! | CACAAATCAAAATTTAGAGA+TGG | - | chr3.2:3281920-3281939 | None:intergenic | 25.0% |
| ! | GCTTATTATTGTCCAATATT+TGG | + | chr3.2:3281113-3281132 | MS.gene009452:intron | 25.0% |
| ! | GTAGTTCATATTTAGGAATT+AGG | - | chr3.2:3279766-3279785 | None:intergenic | 25.0% |
| ! | GTTACAAGAAAACCAAAAAA+GGG | - | chr3.2:3281684-3281703 | None:intergenic | 25.0% |
| ! | TAATGTCATAAGTACTTCAA+TGG | + | chr3.2:3279526-3279545 | MS.gene009452:intron | 25.0% |
| ! | TATTGAGGTAAGCAAAAATT+AGG | - | chr3.2:3282332-3282351 | None:intergenic | 25.0% |
| ! | TCAACCATAGAATTAAAAGT+AGG | - | chr3.2:3281237-3281256 | None:intergenic | 25.0% |
| ! | TCATGTAGTAGTTCATATTT+AGG | - | chr3.2:3279773-3279792 | None:intergenic | 25.0% |
| ! | TTTAGAAAGATTAAGGGAAA+TGG | - | chr3.2:3280847-3280866 | None:intergenic | 25.0% |
| ! | TTTCATCAGATAGAGAAAAT+AGG | - | chr3.2:3280340-3280359 | None:intergenic | 25.0% |
| ! | TTTCCCTTAATCTTTCTAAA+TGG | + | chr3.2:3280847-3280866 | MS.gene009452:intron | 25.0% |
| !! | AAGATTTCAATCTGAAATGT+CGG | - | chr3.2:3282781-3282800 | None:intergenic | 25.0% |
| !! | ATCTAATAGTGTTTTCAACA+TGG | + | chr3.2:3283103-3283122 | MS.gene009452:intron | 25.0% |
| !! | CCATTTTCTCAAATTATTAC+CGG | + | chr3.2:3282854-3282873 | MS.gene009452:intron | 25.0% |
| !! | CTCATATGCACATTTAAAAT+AGG | - | chr3.2:3279989-3280008 | None:intergenic | 25.0% |
| !! | GACATGTCTTTTATAATTCT+TGG | + | chr3.2:3279791-3279810 | MS.gene009452:intron | 25.0% |
| !! | GTAAAAGAAAGTATATCGAA+TGG | - | chr3.2:3281958-3281977 | None:intergenic | 25.0% |
| !! | TCTAACTTTTAAATGATGAC+TGG | + | chr3.2:3280219-3280238 | MS.gene009452:intron | 25.0% |
| !!! | ATGTTTAGTTCTAATCAAAG+TGG | - | chr3.2:3280391-3280410 | None:intergenic | 25.0% |
| !!! | ATTTTAACATGCTATCAAAG+CGG | + | chr3.2:3280359-3280378 | MS.gene009452:intron | 25.0% |
| !!! | ATTTTGGTAACAAATCTATG+TGG | - | chr3.2:3280460-3280479 | None:intergenic | 25.0% |
| !!! | TCATCCTACTTTTAATTCTA+TGG | + | chr3.2:3281230-3281249 | MS.gene009452:intron | 25.0% |
| !!! | TTTTTGGTTTTCTTGTAACT+GGG | + | chr3.2:3281685-3281704 | MS.gene009452:intron | 25.0% |
| !!! | TTTTTTGGTTTTCTTGTAAC+TGG | + | chr3.2:3281684-3281703 | MS.gene009452:intron | 25.0% |
| AAAAAAGGAAGGAAAAATGC+AGG | - | chr3.2:3279694-3279713 | None:intergenic | 30.0% | |
| AATTAGGTCAACAGAGAATT+AGG | + | chr3.2:3279409-3279428 | MS.gene009452:CDS | 30.0% | |
| ACAGTCATTTGAAAATGAGA+TGG | + | chr3.2:3280086-3280105 | MS.gene009452:CDS | 30.0% | |
| ACATTCATGGTAGTCAAAAT+CGG | - | chr3.2:3281877-3281896 | None:intergenic | 30.0% | |
| AGACATATAAAGACAAACCA+CGG | - | chr3.2:3282008-3282027 | None:intergenic | 30.0% | |
| AGATGTATGTAGCAGTTATT+GGG | + | chr3.2:3281546-3281565 | MS.gene009452:intron | 30.0% | |
| ATCGTTAAATAGTCCTACAT+CGG | + | chr3.2:3281411-3281430 | MS.gene009452:intron | 30.0% | |
| ATTAACACCAATGAATTTGG+TGG | + | chr3.2:3281640-3281659 | MS.gene009452:intron | 30.0% | |
| ATTGAAATCTTCTCCAGTAT+CGG | + | chr3.2:3282790-3282809 | MS.gene009452:intron | 30.0% | |
| CAAAATTTAGAGATGGCAAT+TGG | - | chr3.2:3281913-3281932 | None:intergenic | 30.0% | |
| CAATAATAAGCAAGCAAACT+TGG | - | chr3.2:3281104-3281123 | None:intergenic | 30.0% | |
| CACATAAAGCAAGATAAGAT+TGG | - | chr3.2:3281044-3281063 | None:intergenic | 30.0% | |
| CACTATTAGATCAAATACGA+AGG | - | chr3.2:3283094-3283113 | None:intergenic | 30.0% | |
| CACTTTGTATAATGAACCTA+AGG | + | chr3.2:3281278-3281297 | MS.gene009452:intron | 30.0% | |
| CAGATAGAGAAAATAGGAAA+GGG | - | chr3.2:3280334-3280353 | None:intergenic | 30.0% | |
| CCGGTAATAATTTGAGAAAA+TGG | - | chr3.2:3282857-3282876 | None:intergenic | 30.0% | |
| CTGAGAATGTGTTTATAAGT+GGG | + | chr3.2:3281446-3281465 | MS.gene009452:intron | 30.0% | |
| GAAGTTGAATAGATCTATGA+TGG | + | chr3.2:3283133-3283152 | MS.gene009452:CDS | 30.0% | |
| GTCATTAACACCAATGAATT+TGG | + | chr3.2:3281637-3281656 | MS.gene009452:intron | 30.0% | |
| GTTCATTATACAAAGTGACA+GGG | - | chr3.2:3281275-3281294 | None:intergenic | 30.0% | |
| TAAAAGTAGGATGAAAATGG+AGG | - | chr3.2:3281224-3281243 | None:intergenic | 30.0% | |
| TAAATAGTAGGATCGTAACA+CGG | + | chr3.2:3281382-3281401 | MS.gene009452:intron | 30.0% | |
| TAGCAGAAATTTGACAACAA+TGG | + | chr3.2:3280813-3280832 | MS.gene009452:intron | 30.0% | |
| TCAGATAGAGAAAATAGGAA+AGG | - | chr3.2:3280335-3280354 | None:intergenic | 30.0% | |
| TCTTATATGACAATGCTTCA+AGG | - | chr3.2:3283071-3283090 | None:intergenic | 30.0% | |
| TGAAATAGAGACAAGAGAAA+AGG | - | chr3.2:3280286-3280305 | None:intergenic | 30.0% | |
| TGAGAATGTGTTTATAAGTG+GGG | + | chr3.2:3281447-3281466 | MS.gene009452:intron | 30.0% | |
| TTGTTGTCAAATTTCTGCTA+TGG | - | chr3.2:3280813-3280832 | None:intergenic | 30.0% | |
| ! | ACCTAGTCTAGAGTTTAAAT+GGG | - | chr3.2:3282654-3282673 | None:intergenic | 30.0% |
| ! | ACTTTCTTTTACCTTTACTC+AGG | + | chr3.2:3281966-3281985 | MS.gene009452:intron | 30.0% |
| ! | GGTAATGCTTTTGCATATAA+TGG | + | chr3.2:3279883-3279902 | MS.gene009452:intron | 30.0% |
| ! | GTGGGTTTCTTAATTTTCTT+TGG | + | chr3.2:3282247-3282266 | MS.gene009452:intron | 30.0% |
| ! | GTTTAAGCTATAGTTTTCCT+TGG | + | chr3.2:3280869-3280888 | MS.gene009452:intron | 30.0% |
| !! | AATTCATTGGTGTTAATGAC+TGG | - | chr3.2:3281637-3281656 | None:intergenic | 30.0% |
| !! | TTAGTTCTAATCAAAGTGGA+TGG | - | chr3.2:3280387-3280406 | None:intergenic | 30.0% |
| !! | TTTTTCCCACTAGTTGATAT+TGG | + | chr3.2:3280583-3280602 | MS.gene009452:intron | 30.0% |
| AAATGAGATGGCAAAGTTTC+AGG | + | chr3.2:3280098-3280117 | MS.gene009452:CDS | 35.0% | |
| AACAATCCGCCACATAAATA+TGG | + | chr3.2:3280692-3280711 | MS.gene009452:intron | 35.0% | |
| AACATAGACACCAAACTAAG+AGG | - | chr3.2:3280514-3280533 | None:intergenic | 35.0% | |
| AAGGGTAGTCTAATAGTGAA+AGG | - | chr3.2:3280903-3280922 | None:intergenic | 35.0% | |
| AATTTAGAGATGGCAATTGG+AGG | - | chr3.2:3281910-3281929 | None:intergenic | 35.0% | |
| AGATGATCAATGAGATTGTG+AGG | - | chr3.2:3282285-3282304 | None:intergenic | 35.0% | |
| ATAAAGGACATTGACCAGAA+GGG | - | chr3.2:3280921-3280940 | None:intergenic | 35.0% | |
| ATACCATGGCTTCATTTGTA+TGG | - | chr3.2:3282532-3282551 | None:intergenic | 35.0% | |
| ATCATATCATTCATAGCTCC+AGG | - | chr3.2:3283200-3283219 | None:intergenic | 35.0% | |
| ATGTAGCCAATATCAACTAG+TGG | - | chr3.2:3280592-3280611 | None:intergenic | 35.0% | |
| CAAAAAATTAGCTAGCCAGA+TGG | - | chr3.2:3279670-3279689 | None:intergenic | 35.0% | |
| CAAAACAGTGTTATCAATCG+CGG | + | chr3.2:3280653-3280672 | MS.gene009452:intron | 35.0% | |
| CCACTTATAAACACATTCTC+AGG | - | chr3.2:3281448-3281467 | None:intergenic | 35.0% | |
| CCTGAGAATGTGTTTATAAG+TGG | + | chr3.2:3281445-3281464 | MS.gene009452:intron | 35.0% | |
| GAAGACAAAAACACGGATAA+AGG | - | chr3.2:3280937-3280956 | None:intergenic | 35.0% | |
| GAGAATGTGTTTATAAGTGG+GGG | + | chr3.2:3281448-3281467 | MS.gene009452:intron | 35.0% | |
| GAGATGTATGTAGCAGTTAT+TGG | + | chr3.2:3281545-3281564 | MS.gene009452:intron | 35.0% | |
| GAGGAAGACAAGTATAAAAC+TGG | - | chr3.2:3280495-3280514 | None:intergenic | 35.0% | |
| GCAAGAAAGTTAATACCATC+TGG | + | chr3.2:3279652-3279671 | MS.gene009452:intron | 35.0% | |
| GGGACAATGATCATTGTATT+GGG | + | chr3.2:3281566-3281585 | MS.gene009452:intron | 35.0% | |
| GGTTCATTATACAAAGTGAC+AGG | - | chr3.2:3281276-3281295 | None:intergenic | 35.0% | |
| GTAACAAATCTATGTGGAAC+TGG | - | chr3.2:3280454-3280473 | None:intergenic | 35.0% | |
| GTAGAAAACGGCTAATAGTA+AGG | - | chr3.2:3282377-3282396 | None:intergenic | 35.0% | |
| GTCACAAGATCGTAAATAGT+AGG | + | chr3.2:3281370-3281389 | MS.gene009452:intron | 35.0% | |
| GTTTGTCAAGACAAGTATGA+GGG | + | chr3.2:3283155-3283174 | MS.gene009452:CDS | 35.0% | |
| TACAAATGAAGCCATGGTAT+AGG | + | chr3.2:3282532-3282551 | MS.gene009452:intron | 35.0% | |
| TACTTGTCTTCCTCTTAGTT+TGG | + | chr3.2:3280501-3280520 | MS.gene009452:intron | 35.0% | |
| TCAACTAGTGGGAAAAAACT+TGG | - | chr3.2:3280580-3280599 | None:intergenic | 35.0% | |
| TGAAAGCTGCTAGAAAATCA+AGG | + | chr3.2:3282679-3282698 | MS.gene009452:intron | 35.0% | |
| TGGAACTGGAAATCTAAACA+AGG | - | chr3.2:3280440-3280459 | None:intergenic | 35.0% | |
| TGGGACAATGATCATTGTAT+TGG | + | chr3.2:3281565-3281584 | MS.gene009452:intron | 35.0% | |
| TGTAGCCAATATCAACTAGT+GGG | - | chr3.2:3280591-3280610 | None:intergenic | 35.0% | |
| ! | AACAAGTTGAAAGCTTCCTT+TGG | + | chr3.2:3283275-3283294 | MS.gene009452:CDS | 35.0% |
| ! | AATTGACATGGTCTTGAACA+GGG | - | chr3.2:3279479-3279498 | None:intergenic | 35.0% |
| ! | ACTGTAGAGATTCGTTTTAG+TGG | - | chr3.2:3280976-3280995 | None:intergenic | 35.0% |
| ! | ATAGTGAAGCGTTAACAACT+CGG | - | chr3.2:3282568-3282587 | None:intergenic | 35.0% |
| ! | CCTAGTCTAGAGTTTAAATG+GGG | - | chr3.2:3282653-3282672 | None:intergenic | 35.0% |
| ! | CTACGCATTCTGCAATTTTT+AGG | - | chr3.2:3281753-3281772 | None:intergenic | 35.0% |
| ! | CTGGATGACGATTACAATTT+TGG | - | chr3.2:3280476-3280495 | None:intergenic | 35.0% |
| ! | GACCTAGTCTAGAGTTTAAA+TGG | - | chr3.2:3282655-3282674 | None:intergenic | 35.0% |
| ! | GTCTTGATTTTCCTATACCA+TGG | - | chr3.2:3282546-3282565 | None:intergenic | 35.0% |
| ! | TAATTGACATGGTCTTGAAC+AGG | - | chr3.2:3279480-3279499 | None:intergenic | 35.0% |
| ! | TAGTGTTTTCAACATGGTAC+AGG | + | chr3.2:3283109-3283128 | MS.gene009452:intron | 35.0% |
| ! | TATAATAGGTGTTGCGCTTA+TGG | + | chr3.2:3280745-3280764 | MS.gene009452:intron | 35.0% |
| ! | TTCAACTTGTTCGTAAGAAG+CGG | - | chr3.2:3283266-3283285 | None:intergenic | 35.0% |
| ! | TTCTTTTACCTTTACTCAGG+TGG | + | chr3.2:3281969-3281988 | MS.gene009452:intron | 35.0% |
| !! | AATTTTTAGGCTTTCCAGGT+CGG | - | chr3.2:3281740-3281759 | None:intergenic | 35.0% |
| !! | GCGATTGATAACACTGTTTT+GGG | - | chr3.2:3280654-3280673 | None:intergenic | 35.0% |
| !! | TCTCATGTTTTAAGCACCTT+AGG | - | chr3.2:3281297-3281316 | None:intergenic | 35.0% |
| AACATTGTAGGTCTTAGAGG+CGG | + | chr3.2:3281144-3281163 | MS.gene009452:intron | 40.0% | |
| AAGACCTACAATGTTGTGCA+AGG | - | chr3.2:3281139-3281158 | None:intergenic | 40.0% | |
| ACAGCAGTTAATCACACTGT+GGG | + | chr3.2:3281595-3281614 | MS.gene009452:intron | 40.0% | |
| ACGGCTAATAGTAAGGTAGT+TGG | - | chr3.2:3282370-3282389 | None:intergenic | 40.0% | |
| AGCTCATAACACTAGAGAGA+AGG | - | chr3.2:3282455-3282474 | None:intergenic | 40.0% | |
| ATCGGGATCCTAGATATGAT+CGG | + | chr3.2:3281341-3281360 | MS.gene009452:intron | 40.0% | |
| ATGATGACTGGAGCTGATTA+AGG | + | chr3.2:3280231-3280250 | MS.gene009452:intron | 40.0% | |
| ATGTCGGTATCTTGTCATGT+TGG | - | chr3.2:3282819-3282838 | None:intergenic | 40.0% | |
| CACAACATTGTAGGTCTTAG+AGG | + | chr3.2:3281141-3281160 | MS.gene009452:intron | 40.0% | |
| CACTATTTGTTCCACTTCCA+TGG | + | chr3.2:3282582-3282601 | MS.gene009452:intron | 40.0% | |
| CAGAATGCGTAGAAACGTAA+CGG | + | chr3.2:3281761-3281780 | MS.gene009452:intron | 40.0% | |
| CATGAGATACGATGTGTTCA+AGG | + | chr3.2:3281310-3281329 | MS.gene009452:intron | 40.0% | |
| CCATGTCAATTATACTCTCC+AGG | + | chr3.2:3279488-3279507 | MS.gene009452:CDS | 40.0% | |
| CCCCATTTAAACTCTAGACT+AGG | + | chr3.2:3282650-3282669 | MS.gene009452:intron | 40.0% | |
| CTTTGATAGAAGCAGAAAGC+AGG | + | chr3.2:3280011-3280030 | MS.gene009452:CDS | 40.0% | |
| GACTGTTGCACATTAGAAAG+AGG | - | chr3.2:3280072-3280091 | None:intergenic | 40.0% | |
| GAGAATTAGGCAGAAACTTG+AGG | + | chr3.2:3279422-3279441 | MS.gene009452:CDS | 40.0% | |
| GATAAAGGACATTGACCAGA+AGG | - | chr3.2:3280922-3280941 | None:intergenic | 40.0% | |
| GCATAAAAAAGCCATGGAAG+TGG | - | chr3.2:3282596-3282615 | None:intergenic | 40.0% | |
| GGTTTGTCAAGACAAGTATG+AGG | + | chr3.2:3283154-3283173 | MS.gene009452:CDS | 40.0% | |
| GTAGTCATAACCACAGATGT+CGG | - | chr3.2:3282835-3282854 | None:intergenic | 40.0% | |
| GTGGGAAAAAACTTGGTTGT+CGG | - | chr3.2:3280573-3280592 | None:intergenic | 40.0% | |
| GTGTTCAAGGTAGTCAGAAT+CGG | + | chr3.2:3281323-3281342 | MS.gene009452:intron | 40.0% | |
| GTTATGAGCTCAAAGAATGC+CGG | + | chr3.2:3282465-3282484 | MS.gene009452:intron | 40.0% | |
| TACAAGCTGTGACTGTATGA+GGG | + | chr3.2:3281483-3281502 | MS.gene009452:intron | 40.0% | |
| TACAGCAGTTAATCACACTG+TGG | + | chr3.2:3281594-3281613 | MS.gene009452:intron | 40.0% | |
| TATACTCTCCAGGTTCTTTC+TGG | + | chr3.2:3279498-3279517 | MS.gene009452:intron | 40.0% | |
| TATCACAGAACACAGCGATA+GGG | + | chr3.2:3281826-3281845 | MS.gene009452:intron | 40.0% | |
| TATGCAACAAGTGTACATGC+TGG | + | chr3.2:3282073-3282092 | MS.gene009452:intron | 40.0% | |
| TCACTATTAGACTACCCTTC+TGG | + | chr3.2:3280904-3280923 | MS.gene009452:intron | 40.0% | |
| TCATACAGTCACAGCTTGTA+AGG | - | chr3.2:3281483-3281502 | None:intergenic | 40.0% | |
| TGATGACTGGAGCTGATTAA+GGG | + | chr3.2:3280232-3280251 | MS.gene009452:intron | 40.0% | |
| TGCAGCATATGTCAGAAACA+TGG | + | chr3.2:3280718-3280737 | MS.gene009452:intron | 40.0% | |
| TGTTCAAGGTAGTCAGAATC+GGG | + | chr3.2:3281324-3281343 | MS.gene009452:intron | 40.0% | |
| TGTTGTGCAAGGCCAAATAT+TGG | - | chr3.2:3281128-3281147 | None:intergenic | 40.0% | |
| TTAAGAGACCAGAAAGAACC+TGG | - | chr3.2:3279509-3279528 | None:intergenic | 40.0% | |
| TTACAAGCTGTGACTGTATG+AGG | + | chr3.2:3281482-3281501 | MS.gene009452:intron | 40.0% | |
| TTATCACAGAACACAGCGAT+AGG | + | chr3.2:3281825-3281844 | MS.gene009452:intron | 40.0% | |
| ! | ATTGACATGGTCTTGAACAG+GGG | - | chr3.2:3279478-3279497 | None:intergenic | 40.0% |
| ! | CCTGGAGAGTATAATTGACA+TGG | - | chr3.2:3279491-3279510 | None:intergenic | 40.0% |
| ! | CGTAAATTGATAGCAGACAG+TGG | - | chr3.2:3281798-3281817 | None:intergenic | 40.0% |
| ! | GTGTTATCAATCGCGGATTA+CGG | + | chr3.2:3280660-3280679 | MS.gene009452:intron | 40.0% |
| ! | TAAATGGGGACAAGAAGTGT+TGG | - | chr3.2:3282639-3282658 | None:intergenic | 40.0% |
| ! | TTGATAGCAGACAGTGGAAT+CGG | - | chr3.2:3281792-3281811 | None:intergenic | 40.0% |
| !! | ATTGGTGTTAATGACTGGAG+CGG | - | chr3.2:3281632-3281651 | None:intergenic | 40.0% |
| !! | ATTTTTAGGCTTTCCAGGTC+GGG | - | chr3.2:3281739-3281758 | None:intergenic | 40.0% |
| !! | CGCGATTGATAACACTGTTT+TGG | - | chr3.2:3280655-3280674 | None:intergenic | 40.0% |
| !! | CTGCAATTTTTAGGCTTTCC+AGG | - | chr3.2:3281744-3281763 | None:intergenic | 40.0% |
| !!! | GTGGGTTATGAACCCTTTTT+TGG | + | chr3.2:3281669-3281688 | MS.gene009452:intron | 40.0% |
| AGTGAAAGGTAGTGAGACCA+AGG | - | chr3.2:3280889-3280908 | None:intergenic | 45.0% | |
| ATCCTAGATATGATCGGGGA+AGG | + | chr3.2:3281347-3281366 | MS.gene009452:intron | 45.0% | |
| CAAAGTGACAGGGAGATAGA+AGG | - | chr3.2:3281265-3281284 | None:intergenic | 45.0% | |
| CAAGACTTCCACCTGAGTAA+AGG | - | chr3.2:3281980-3281999 | None:intergenic | 45.0% | |
| CCACACTCCACCAAATTCAT+TGG | - | chr3.2:3281650-3281669 | None:intergenic | 45.0% | |
| CCACCATACAAATGAAGCCA+TGG | + | chr3.2:3282526-3282545 | MS.gene009452:intron | 45.0% | |
| CCATGGCTTCATTTGTATGG+TGG | - | chr3.2:3282529-3282548 | None:intergenic | 45.0% | |
| GCAGTGCCATATTTATGTGG+CGG | - | chr3.2:3280701-3280720 | None:intergenic | 45.0% | |
| GCGCGTTGAAGACAAAAACA+CGG | - | chr3.2:3280944-3280963 | None:intergenic | 45.0% | |
| GCTGCAGTGCCATATTTATG+TGG | - | chr3.2:3280704-3280723 | None:intergenic | 45.0% | |
| GGATGAAAATGGAGGAAGTC+TGG | - | chr3.2:3281216-3281235 | None:intergenic | 45.0% | |
| GGTCATCTCTTATCCGATGT+AGG | - | chr3.2:3281427-3281446 | None:intergenic | 45.0% | |
| GTAATGCGCTTCAGAGTTTC+CGG | - | chr3.2:3282487-3282506 | None:intergenic | 45.0% | |
| GTCATGTTGGTATCCGATAC+TGG | - | chr3.2:3282806-3282825 | None:intergenic | 45.0% | |
| TAAGACACAGACACAGAGAC+CGG | - | chr3.2:3282876-3282895 | None:intergenic | 45.0% | |
| TCAAAGCTCCAACAGAAACC+TGG | + | chr3.2:3283179-3283198 | MS.gene009452:CDS | 45.0% | |
| TCATAGCTCCAGGTTTCTGT+TGG | - | chr3.2:3283190-3283209 | None:intergenic | 45.0% | |
| TCCTAGATATGATCGGGGAA+GGG | + | chr3.2:3281348-3281367 | MS.gene009452:intron | 45.0% | |
| TCGGGATCCTAGATATGATC+GGG | + | chr3.2:3281342-3281361 | MS.gene009452:intron | 45.0% | |
| TGACAAGATACCGACATCTG+TGG | + | chr3.2:3282822-3282841 | MS.gene009452:intron | 45.0% | |
| TGCATTGTGGCGTTATAGCA+TGG | - | chr3.2:3280789-3280808 | None:intergenic | 45.0% | |
| TTTCTGCTATGGCTGCATTG+TGG | - | chr3.2:3280802-3280821 | None:intergenic | 45.0% | |
| ! | ACTGTTGTCTGGAATGCCAA+AGG | - | chr3.2:3283294-3283313 | None:intergenic | 45.0% |
| ! | ATGAATTTGGTGGAGTGTGG+TGG | + | chr3.2:3281650-3281669 | MS.gene009452:intron | 45.0% |
| ! | CCAATGAATTTGGTGGAGTG+TGG | + | chr3.2:3281647-3281666 | MS.gene009452:intron | 45.0% |
| ! | TGAATTTGGTGGAGTGTGGT+GGG | + | chr3.2:3281651-3281670 | MS.gene009452:intron | 45.0% |
| ! | TTATCAATCGCGGATTACGG+TGG | + | chr3.2:3280663-3280682 | MS.gene009452:intron | 45.0% |
| !! | ACAAGAAGTGTTGGCAGTCA+TGG | - | chr3.2:3282630-3282649 | None:intergenic | 45.0% |
| !! | GGGTCGTTTTAACAGAAACC+AGG | + | chr3.2:3281705-3281724 | MS.gene009452:intron | 45.0% |
| !! | TTATGTGGCGGATTGTTAGC+TGG | - | chr3.2:3280689-3280708 | None:intergenic | 45.0% |
| !! | TTGGCCTTGCACAACATTGT+AGG | + | chr3.2:3281132-3281151 | MS.gene009452:intron | 45.0% |
| ACCCTTCCCCGATCATATCT+AGG | - | chr3.2:3281352-3281371 | None:intergenic | 50.0% | |
| AGCTGTGACTGTATGAGGGA+AGG | + | chr3.2:3281487-3281506 | MS.gene009452:intron | 50.0% | |
| CGGGATCCTAGATATGATCG+GGG | + | chr3.2:3281343-3281362 | MS.gene009452:intron | 50.0% | |
| TACATGCTGGCGTCATCTCT+TGG | + | chr3.2:3282086-3282105 | MS.gene009452:intron | 50.0% | |
| TTGAATCGCTTCGTCAGCAC+AGG | - | chr3.2:3283225-3283244 | None:intergenic | 50.0% | |
| ! | GTGGAAGTCTTGTGTTTCCG+TGG | + | chr3.2:3281988-3282007 | MS.gene009452:intron | 50.0% |
| GCAGCAGCTGAAGCGCAATT+AGG | + | chr3.2:3279393-3279412 | MS.gene009452:CDS | 55.0% | |
| CCAGGACGTGTAACCCGACC+TGG | + | chr3.2:3281723-3281742 | MS.gene009452:intron | 65.0% | |
| CCAGGTCGGGTTACACGTCC+TGG | - | chr3.2:3281726-3281745 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 3279381 | 3283322 | 3279381 | ID=MS.gene009452 |
| chr3.2 | mRNA | 3279381 | 3283322 | 3279381 | ID=MS.gene009452.t1;Parent=MS.gene009452 |
| chr3.2 | exon | 3279381 | 3279509 | 3279381 | ID=MS.gene009452.t1.exon1;Parent=MS.gene009452.t1 |
| chr3.2 | CDS | 3279381 | 3279509 | 3279381 | ID=cds.MS.gene009452.t1;Parent=MS.gene009452.t1 |
| chr3.2 | exon | 3279982 | 3280119 | 3279982 | ID=MS.gene009452.t1.exon2;Parent=MS.gene009452.t1 |
| chr3.2 | CDS | 3279982 | 3280119 | 3279982 | ID=cds.MS.gene009452.t1;Parent=MS.gene009452.t1 |
| chr3.2 | exon | 3283131 | 3283322 | 3283131 | ID=MS.gene009452.t1.exon3;Parent=MS.gene009452.t1 |
| chr3.2 | CDS | 3283131 | 3283322 | 3283131 | ID=cds.MS.gene009452.t1;Parent=MS.gene009452.t1 |
| Gene Sequence |
| Protein sequence |
