Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51624.t1 | XP_003598260.1 | 96.7 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 2.10E-75 | 291.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51624.t1 | Q2HJI3 | 27.6 | 105 | 73 | 2 | 42 | 143 | 28 | 132 | 7.3e-08 | 58.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51624.t1 | G7IYL4 | 96.7 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 1.5e-75 | 291.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060830 | MS.gene51624 | 0.83344 | 5.33E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009452 | MS.gene51624 | PPI |
| MS.gene84381 | MS.gene51624 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51624.t1 | MTR_3g009130 | 96.711 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 1.29e-108 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51624.t1 | AT2G31725 | 62.416 | 149 | 55 | 1 | 1 | 148 | 1 | 149 | 8.79e-71 | 210 |
| MS.gene51624.t1 | AT1G05730 | 60.403 | 149 | 58 | 1 | 1 | 148 | 1 | 149 | 3.89e-68 | 203 |
| MS.gene51624.t1 | AT2G43720 | 51.389 | 144 | 69 | 1 | 6 | 148 | 4 | 147 | 2.76e-55 | 171 |
| MS.gene51624.t1 | AT1G05730 | 59.259 | 108 | 43 | 1 | 42 | 148 | 10 | 117 | 4.88e-45 | 144 |
| MS.gene51624.t1 | AT1G05740 | 45.652 | 138 | 62 | 2 | 1 | 125 | 1 | 138 | 1.43e-41 | 135 |
| MS.gene51624.t1 | AT2G43720 | 50.926 | 108 | 52 | 1 | 42 | 148 | 1 | 108 | 2.56e-39 | 129 |
Find 24 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAGATGGCAAAGTTTC+AGG | 0.195239 | 3.4:+4198334 | MS.gene51624:CDS |
| CTCATATGCACATTTAAAAT+AGG | 0.309655 | 3.4:-4198222 | None:intergenic |
| AATTAGGTCAACAGAGAATT+AGG | 0.348786 | 3.4:+4197645 | MS.gene51624:CDS |
| GCAGCAGCTGAAGCGCAATT+AGG | 0.389975 | 3.4:+4197629 | MS.gene51624:CDS |
| TAATTGACATGGTCTTGAAC+AGG | 0.399803 | 3.4:-4197713 | None:intergenic |
| TTCTAGGAAGAACTGTTGTC+TGG | 0.450400 | 3.4:-4201536 | None:intergenic |
| TCATAGCTCCAGGTTTCTGT+TGG | 0.458233 | 3.4:-4201421 | None:intergenic |
| AACAAGTTGAAAGCTTCCTT+TGG | 0.460762 | 3.4:+4201509 | MS.gene51624:CDS |
| GAAGTTGAATAGATCTATGA+TGG | 0.466964 | 3.4:+4201367 | MS.gene51624:CDS |
| ATCATATCATTCATAGCTCC+AGG | 0.479620 | 3.4:-4201431 | None:intergenic |
| TCAAAGCTCCAACAGAAACC+TGG | 0.503368 | 3.4:+4201413 | MS.gene51624:CDS |
| GGTTTGTCAAGACAAGTATG+AGG | 0.511683 | 3.4:+4201388 | MS.gene51624:CDS |
| GACTGTTGCACATTAGAAAG+AGG | 0.512334 | 3.4:-4198305 | None:intergenic |
| CCATGTCAATTATACTCTCC+AGG | 0.522500 | 3.4:+4197724 | MS.gene51624:CDS |
| TTGAATCGCTTCGTCAGCAC+AGG | 0.525639 | 3.4:-4201456 | None:intergenic |
| CTTTGATAGAAGCAGAAAGC+AGG | 0.531953 | 3.4:+4198247 | MS.gene51624:CDS |
| TTCAACTTGTTCGTAAGAAG+CGG | 0.544894 | 3.4:-4201497 | None:intergenic |
| GAGAATTAGGCAGAAACTTG+AGG | 0.580267 | 3.4:+4197658 | MS.gene51624:CDS |
| AATTGACATGGTCTTGAACA+GGG | 0.588865 | 3.4:-4197712 | None:intergenic |
| ACAGTCATTTGAAAATGAGA+TGG | 0.593900 | 3.4:+4198322 | MS.gene51624:CDS |
| CCTGGAGAGTATAATTGACA+TGG | 0.606570 | 3.4:-4197724 | None:intergenic |
| ATTGACATGGTCTTGAACAG+GGG | 0.619900 | 3.4:-4197711 | None:intergenic |
| ACTGTTGTCTGGAATGCCAA+AGG | 0.633485 | 3.4:-4201525 | None:intergenic |
| GTTTGTCAAGACAAGTATGA+GGG | 0.640452 | 3.4:+4201389 | MS.gene51624:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGAATCAAAATAAAAA+AGG | - | chr3.4:4197945-4197964 | None:intergenic | 10.0% |
| !!! | TTTGAAATTTTAATATAGAT+AGG | + | chr3.4:4198098-4198117 | MS.gene51624:intron | 10.0% |
| !! | AAATTCTATTTATCAGTAAA+AGG | - | chr3.4:4198160-4198179 | None:intergenic | 15.0% |
| !! | AATTCTATTTATCAGTAAAA+GGG | - | chr3.4:4198159-4198178 | None:intergenic | 15.0% |
| !! | CAAGGTATAAATAAATAATT+TGG | - | chr3.4:4201236-4201255 | None:intergenic | 15.0% |
| !! | TCAAAAGTTAAATTAATACA+AGG | - | chr3.4:4201254-4201273 | None:intergenic | 15.0% |
| !!! | AAATTAATTTTCTATGATGT+GGG | + | chr3.4:4200463-4200482 | MS.gene51624:intron | 15.0% |
| !!! | TATTAAAATTTCAAAGCATT+TGG | - | chr3.4:4198093-4198112 | None:intergenic | 15.0% |
| !!! | TTTATAATTCTTGGTTTTAA+AGG | + | chr3.4:4198036-4198055 | MS.gene51624:intron | 15.0% |
| !! | AAAAAATTCTTAAGTTTGAG+TGG | + | chr3.4:4199407-4199426 | MS.gene51624:intron | 20.0% |
| !! | AAACCATTTAGAAAGATTAA+GGG | - | chr3.4:4199087-4199106 | None:intergenic | 20.0% |
| !! | AATTAAAAGTAGGATGAAAA+TGG | - | chr3.4:4199461-4199480 | None:intergenic | 20.0% |
| !! | CACATCATAGAAAATTAATT+TGG | - | chr3.4:4200464-4200483 | None:intergenic | 20.0% |
| !! | GAAATGATTAAGATAGAAAA+AGG | + | chr3.4:4200371-4200390 | MS.gene51624:intron | 20.0% |
| !! | GAATAAGCGTAATAAATTAT+AGG | - | chr3.4:4201152-4201171 | None:intergenic | 20.0% |
| !! | TAAACCATTTAGAAAGATTA+AGG | - | chr3.4:4199088-4199107 | None:intergenic | 20.0% |
| !! | TAGAATCAAATTAAAAGAAG+TGG | - | chr3.4:4198437-4198456 | None:intergenic | 20.0% |
| !! | TCTTTCATTGTAATATTGAA+TGG | + | chr3.4:4197825-4197844 | MS.gene51624:intron | 20.0% |
| !! | TGAATCAAAATAAAAAAGGA+AGG | - | chr3.4:4197941-4197960 | None:intergenic | 20.0% |
| !! | TTGCATATAATGGTAATATT+CGG | + | chr3.4:4198129-4198148 | MS.gene51624:intron | 20.0% |
| !!! | AAATTAAGTGTTGTAGAAAA+CGG | - | chr3.4:4200623-4200642 | None:intergenic | 20.0% |
| !!! | ACACATTGTTTTTTATAATG+TGG | - | chr3.4:4200417-4200436 | None:intergenic | 20.0% |
| !!! | AGATCTTTTTACATGTTTTT+GGG | + | chr3.4:4200437-4200456 | MS.gene51624:intron | 20.0% |
| !!! | ATAAACTCATGTCATTTATT+TGG | + | chr3.4:4198862-4198881 | MS.gene51624:intron | 20.0% |
| !!! | CAAATTAATTTTCTATGATG+TGG | + | chr3.4:4200462-4200481 | MS.gene51624:intron | 20.0% |
| !!! | GCTTTCAATTTTATAGAATA+GGG | + | chr3.4:4198645-4198664 | MS.gene51624:intron | 20.0% |
| !!! | GTAATATTGAATGGTTTTAT+TGG | + | chr3.4:4197834-4197853 | MS.gene51624:intron | 20.0% |
| !!! | TAGATCTTTTTACATGTTTT+TGG | + | chr3.4:4200436-4200455 | MS.gene51624:intron | 20.0% |
| !!! | TGCTTTCAATTTTATAGAAT+AGG | + | chr3.4:4198644-4198663 | MS.gene51624:intron | 20.0% |
| !!! | TGTTTTTTATAATGTGGAAA+AGG | - | chr3.4:4200411-4200430 | None:intergenic | 20.0% |
| !!! | TTCATAAATTTTTCAGTAGT+TGG | + | chr3.4:4200651-4200670 | MS.gene51624:intron | 20.0% |
| ! | AGAAACATGGTGTATATAAT+AGG | + | chr3.4:4198965-4198984 | MS.gene51624:intron | 25.0% |
| ! | AGGAACATATAATACATTCA+TGG | - | chr3.4:4200124-4200143 | None:intergenic | 25.0% |
| ! | AGTTACAAGAAAACCAAAAA+AGG | - | chr3.4:4199919-4199938 | None:intergenic | 25.0% |
| ! | ATATATGCATAAAAAAGCCA+TGG | - | chr3.4:4200836-4200855 | None:intergenic | 25.0% |
| ! | ATCAGAGAATATATCTATTG+AGG | - | chr3.4:4200581-4200600 | None:intergenic | 25.0% |
| ! | ATTACAGTCTCAATTGTATT+CGG | + | chr3.4:4200736-4200755 | MS.gene51624:intron | 25.0% |
| ! | ATTCATAGTACTTAACATTG+TGG | + | chr3.4:4199301-4199320 | MS.gene51624:intron | 25.0% |
| ! | CAATCAAACAATCAACAATA+CGG | - | chr3.4:4198188-4198207 | None:intergenic | 25.0% |
| ! | CACAAATCAAAATTTAGAGA+TGG | - | chr3.4:4200154-4200173 | None:intergenic | 25.0% |
| ! | GCTTATTATTGTCCAATATT+TGG | + | chr3.4:4199347-4199366 | MS.gene51624:intron | 25.0% |
| ! | GTAGTTCATATTTAGGAATT+AGG | - | chr3.4:4198002-4198021 | None:intergenic | 25.0% |
| ! | GTTACAAGAAAACCAAAAAA+GGG | - | chr3.4:4199918-4199937 | None:intergenic | 25.0% |
| ! | TAATGTCATAAGTACTTCAA+TGG | + | chr3.4:4197762-4197781 | MS.gene51624:intron | 25.0% |
| ! | TATTGAGGTAAGCAAAAATT+AGG | - | chr3.4:4200566-4200585 | None:intergenic | 25.0% |
| ! | TCAACCATAGAATTAAAAGT+AGG | - | chr3.4:4199471-4199490 | None:intergenic | 25.0% |
| ! | TCATGTAGTAGTTCATATTT+AGG | - | chr3.4:4198009-4198028 | None:intergenic | 25.0% |
| ! | TTTAGAAAGATTAAGGGAAA+TGG | - | chr3.4:4199081-4199100 | None:intergenic | 25.0% |
| ! | TTTCATCAGATAGAGAAAAT+AGG | - | chr3.4:4198574-4198593 | None:intergenic | 25.0% |
| ! | TTTCCCTTAATCTTTCTAAA+TGG | + | chr3.4:4199081-4199100 | MS.gene51624:intron | 25.0% |
| !! | AAGATTTCAATCTGAAATGT+CGG | - | chr3.4:4201015-4201034 | None:intergenic | 25.0% |
| !! | ATCTAATAGTGTTTTCAACA+TGG | + | chr3.4:4201337-4201356 | MS.gene51624:intron | 25.0% |
| !! | CCATTTTCTCAAATTATTAC+CGG | + | chr3.4:4201088-4201107 | MS.gene51624:intron | 25.0% |
| !! | CTCATATGCACATTTAAAAT+AGG | - | chr3.4:4198225-4198244 | None:intergenic | 25.0% |
| !! | GACATGTCTTTTATAATTCT+TGG | + | chr3.4:4198027-4198046 | MS.gene51624:intron | 25.0% |
| !! | GTAAAAGAAAGTATATCGAA+TGG | - | chr3.4:4200192-4200211 | None:intergenic | 25.0% |
| !! | TCTAACTTTTAAATGATGAC+TGG | + | chr3.4:4198453-4198472 | MS.gene51624:intron | 25.0% |
| !!! | ATGTTTAGTTCTAATCAAAG+TGG | - | chr3.4:4198625-4198644 | None:intergenic | 25.0% |
| !!! | ATTTTAACATGCTATCAAAG+CGG | + | chr3.4:4198593-4198612 | MS.gene51624:intron | 25.0% |
| !!! | ATTTTGGTAACAAATCTATG+TGG | - | chr3.4:4198694-4198713 | None:intergenic | 25.0% |
| !!! | TCATCCTACTTTTAATTCTA+TGG | + | chr3.4:4199464-4199483 | MS.gene51624:intron | 25.0% |
| !!! | TTTTTGGTTTTCTTGTAACT+GGG | + | chr3.4:4199919-4199938 | MS.gene51624:intron | 25.0% |
| !!! | TTTTTTGGTTTTCTTGTAAC+TGG | + | chr3.4:4199918-4199937 | MS.gene51624:intron | 25.0% |
| AAAAAAGGAAGGAAAAATGC+AGG | - | chr3.4:4197930-4197949 | None:intergenic | 30.0% | |
| AATTAGGTCAACAGAGAATT+AGG | + | chr3.4:4197645-4197664 | MS.gene51624:CDS | 30.0% | |
| ACAGTCATTTGAAAATGAGA+TGG | + | chr3.4:4198322-4198341 | MS.gene51624:CDS | 30.0% | |
| ACATTCATGGTAGTCAAAAT+CGG | - | chr3.4:4200111-4200130 | None:intergenic | 30.0% | |
| AGACATATAAAGACAAACCA+CGG | - | chr3.4:4200242-4200261 | None:intergenic | 30.0% | |
| AGATGTATGTAGCAGTTATT+GGG | + | chr3.4:4199780-4199799 | MS.gene51624:intron | 30.0% | |
| ATCGTTAAATAGTCCTACAT+CGG | + | chr3.4:4199645-4199664 | MS.gene51624:intron | 30.0% | |
| ATTAACACCAATGAATTTGG+TGG | + | chr3.4:4199874-4199893 | MS.gene51624:intron | 30.0% | |
| ATTGAAATCTTCTCCAGTAT+CGG | + | chr3.4:4201024-4201043 | MS.gene51624:intron | 30.0% | |
| CAAAATTTAGAGATGGCAAT+TGG | - | chr3.4:4200147-4200166 | None:intergenic | 30.0% | |
| CAATAATAAGCAAGCAAACT+TGG | - | chr3.4:4199338-4199357 | None:intergenic | 30.0% | |
| CACATAAAGCAAGATAAGAT+TGG | - | chr3.4:4199278-4199297 | None:intergenic | 30.0% | |
| CACTATTAGATCAAATACGA+AGG | - | chr3.4:4201328-4201347 | None:intergenic | 30.0% | |
| CACTTTGTATAATGAACCTA+AGG | + | chr3.4:4199512-4199531 | MS.gene51624:intron | 30.0% | |
| CAGATAGAGAAAATAGGAAA+GGG | - | chr3.4:4198568-4198587 | None:intergenic | 30.0% | |
| CCGGTAATAATTTGAGAAAA+TGG | - | chr3.4:4201091-4201110 | None:intergenic | 30.0% | |
| CTGAGAATGTGTTTATAAGT+GGG | + | chr3.4:4199680-4199699 | MS.gene51624:intron | 30.0% | |
| GAAGTTGAATAGATCTATGA+TGG | + | chr3.4:4201367-4201386 | MS.gene51624:CDS | 30.0% | |
| GTCATTAACACCAATGAATT+TGG | + | chr3.4:4199871-4199890 | MS.gene51624:intron | 30.0% | |
| GTTCATTATACAAAGTGACA+GGG | - | chr3.4:4199509-4199528 | None:intergenic | 30.0% | |
| TAAAAGTAGGATGAAAATGG+AGG | - | chr3.4:4199458-4199477 | None:intergenic | 30.0% | |
| TAAATAGTAGGATCGTAACA+CGG | + | chr3.4:4199616-4199635 | MS.gene51624:intron | 30.0% | |
| TAGCAGAAATTTGACAACAA+TGG | + | chr3.4:4199047-4199066 | MS.gene51624:intron | 30.0% | |
| TCAGATAGAGAAAATAGGAA+AGG | - | chr3.4:4198569-4198588 | None:intergenic | 30.0% | |
| TCTTATATGACAATGCTTCA+AGG | - | chr3.4:4201305-4201324 | None:intergenic | 30.0% | |
| TGAAATAGAGACAAGAGAAA+AGG | - | chr3.4:4198520-4198539 | None:intergenic | 30.0% | |
| TGAGAATGTGTTTATAAGTG+GGG | + | chr3.4:4199681-4199700 | MS.gene51624:intron | 30.0% | |
| TTGTTGTCAAATTTCTGCTA+TGG | - | chr3.4:4199047-4199066 | None:intergenic | 30.0% | |
| ! | ACCTAGTCTAGAGTTTAAAT+GGG | - | chr3.4:4200888-4200907 | None:intergenic | 30.0% |
| ! | ACTTTCTTTTACCTTTACTC+AGG | + | chr3.4:4200200-4200219 | MS.gene51624:intron | 30.0% |
| ! | GGTAATGCTTTTGCATATAA+TGG | + | chr3.4:4198119-4198138 | MS.gene51624:intron | 30.0% |
| ! | GTGGGTTTCTTAATTTTCTT+TGG | + | chr3.4:4200481-4200500 | MS.gene51624:intron | 30.0% |
| ! | GTTTAAGCTATAGTTTTCCT+TGG | + | chr3.4:4199103-4199122 | MS.gene51624:intron | 30.0% |
| !! | AATTCATTGGTGTTAATGAC+TGG | - | chr3.4:4199871-4199890 | None:intergenic | 30.0% |
| !! | TTAGTTCTAATCAAAGTGGA+TGG | - | chr3.4:4198621-4198640 | None:intergenic | 30.0% |
| !! | TTTTTCCCACTAGTTGATAT+TGG | + | chr3.4:4198817-4198836 | MS.gene51624:intron | 30.0% |
| AAATGAGATGGCAAAGTTTC+AGG | + | chr3.4:4198334-4198353 | MS.gene51624:CDS | 35.0% | |
| AACAATCCGCCACATAAATA+TGG | + | chr3.4:4198926-4198945 | MS.gene51624:intron | 35.0% | |
| AACATAGACACCAAACTAAG+AGG | - | chr3.4:4198748-4198767 | None:intergenic | 35.0% | |
| AAGGGTAGTCTAATAGTGAA+AGG | - | chr3.4:4199137-4199156 | None:intergenic | 35.0% | |
| AATTTAGAGATGGCAATTGG+AGG | - | chr3.4:4200144-4200163 | None:intergenic | 35.0% | |
| AGATGATCAATGAGATTGTG+AGG | - | chr3.4:4200519-4200538 | None:intergenic | 35.0% | |
| ATAAAGGACATTGACCAGAA+GGG | - | chr3.4:4199155-4199174 | None:intergenic | 35.0% | |
| ATACCATGGCTTCATTTGTA+TGG | - | chr3.4:4200766-4200785 | None:intergenic | 35.0% | |
| ATCATATCATTCATAGCTCC+AGG | - | chr3.4:4201434-4201453 | None:intergenic | 35.0% | |
| ATGTAGCCAATATCAACTAG+TGG | - | chr3.4:4198826-4198845 | None:intergenic | 35.0% | |
| CAAAAAATTAGCTAGCCAGA+TGG | - | chr3.4:4197906-4197925 | None:intergenic | 35.0% | |
| CAAAACAGTGTTATCAATCG+CGG | + | chr3.4:4198887-4198906 | MS.gene51624:intron | 35.0% | |
| CCACTTATAAACACATTCTC+AGG | - | chr3.4:4199682-4199701 | None:intergenic | 35.0% | |
| CCTGAGAATGTGTTTATAAG+TGG | + | chr3.4:4199679-4199698 | MS.gene51624:intron | 35.0% | |
| GAAGACAAAAACACGGATAA+AGG | - | chr3.4:4199171-4199190 | None:intergenic | 35.0% | |
| GAGAATGTGTTTATAAGTGG+GGG | + | chr3.4:4199682-4199701 | MS.gene51624:intron | 35.0% | |
| GAGATGTATGTAGCAGTTAT+TGG | + | chr3.4:4199779-4199798 | MS.gene51624:intron | 35.0% | |
| GAGGAAGACAAGTATAAAAC+TGG | - | chr3.4:4198729-4198748 | None:intergenic | 35.0% | |
| GCAAGAAAGTTAATACCATC+TGG | + | chr3.4:4197888-4197907 | MS.gene51624:intron | 35.0% | |
| GGGACAATGATCATTGTATT+GGG | + | chr3.4:4199800-4199819 | MS.gene51624:intron | 35.0% | |
| GGTTCATTATACAAAGTGAC+AGG | - | chr3.4:4199510-4199529 | None:intergenic | 35.0% | |
| GTAACAAATCTATGTGGAAC+TGG | - | chr3.4:4198688-4198707 | None:intergenic | 35.0% | |
| GTAGAAAACGGCTAATAGTA+AGG | - | chr3.4:4200611-4200630 | None:intergenic | 35.0% | |
| GTCACAAGATCGTAAATAGT+AGG | + | chr3.4:4199604-4199623 | MS.gene51624:intron | 35.0% | |
| GTTTGTCAAGACAAGTATGA+GGG | + | chr3.4:4201389-4201408 | MS.gene51624:CDS | 35.0% | |
| TACAAATGAAGCCATGGTAT+AGG | + | chr3.4:4200766-4200785 | MS.gene51624:intron | 35.0% | |
| TACTTGTCTTCCTCTTAGTT+TGG | + | chr3.4:4198735-4198754 | MS.gene51624:intron | 35.0% | |
| TCAACTAGTGGGAAAAAACT+TGG | - | chr3.4:4198814-4198833 | None:intergenic | 35.0% | |
| TGAAAGCTGCTAGAAAATCA+AGG | + | chr3.4:4200913-4200932 | MS.gene51624:intron | 35.0% | |
| TGGAACTGGAAATCTAAACA+AGG | - | chr3.4:4198674-4198693 | None:intergenic | 35.0% | |
| TGGGACAATGATCATTGTAT+TGG | + | chr3.4:4199799-4199818 | MS.gene51624:intron | 35.0% | |
| TGTAGCCAATATCAACTAGT+GGG | - | chr3.4:4198825-4198844 | None:intergenic | 35.0% | |
| ! | AACAAGTTGAAAGCTTCCTT+TGG | + | chr3.4:4201509-4201528 | MS.gene51624:CDS | 35.0% |
| ! | AATTGACATGGTCTTGAACA+GGG | - | chr3.4:4197715-4197734 | None:intergenic | 35.0% |
| ! | ACTGTAGAGATTCGTTTTAG+TGG | - | chr3.4:4199210-4199229 | None:intergenic | 35.0% |
| ! | ATAGTGAAGCGTTAACAACT+CGG | - | chr3.4:4200802-4200821 | None:intergenic | 35.0% |
| ! | CCTAGTCTAGAGTTTAAATG+GGG | - | chr3.4:4200887-4200906 | None:intergenic | 35.0% |
| ! | CTACGCATTCTGCAATTTTT+AGG | - | chr3.4:4199987-4200006 | None:intergenic | 35.0% |
| ! | CTGGATGACGATTACAATTT+TGG | - | chr3.4:4198710-4198729 | None:intergenic | 35.0% |
| ! | GACCTAGTCTAGAGTTTAAA+TGG | - | chr3.4:4200889-4200908 | None:intergenic | 35.0% |
| ! | GTCTTGATTTTCCTATACCA+TGG | - | chr3.4:4200780-4200799 | None:intergenic | 35.0% |
| ! | TAATTGACATGGTCTTGAAC+AGG | - | chr3.4:4197716-4197735 | None:intergenic | 35.0% |
| ! | TAGTGTTTTCAACATGGTAC+AGG | + | chr3.4:4201343-4201362 | MS.gene51624:intron | 35.0% |
| ! | TATAATAGGTGTTGCGCTTA+TGG | + | chr3.4:4198979-4198998 | MS.gene51624:intron | 35.0% |
| ! | TTCAACTTGTTCGTAAGAAG+CGG | - | chr3.4:4201500-4201519 | None:intergenic | 35.0% |
| ! | TTCTTTTACCTTTACTCAGG+TGG | + | chr3.4:4200203-4200222 | MS.gene51624:intron | 35.0% |
| !! | AATTTTTAGGCTTTCCAGGT+CGG | - | chr3.4:4199974-4199993 | None:intergenic | 35.0% |
| !! | GCGATTGATAACACTGTTTT+GGG | - | chr3.4:4198888-4198907 | None:intergenic | 35.0% |
| !! | TCTCATGTTTTAAGCACCTT+AGG | - | chr3.4:4199531-4199550 | None:intergenic | 35.0% |
| AACATTGTAGGTCTTAGAGG+CGG | + | chr3.4:4199378-4199397 | MS.gene51624:intron | 40.0% | |
| AAGACCTACAATGTTGTGCA+AGG | - | chr3.4:4199373-4199392 | None:intergenic | 40.0% | |
| ACAGCAGTTAATCACACTGT+GGG | + | chr3.4:4199829-4199848 | MS.gene51624:intron | 40.0% | |
| ACGGCTAATAGTAAGGTAGT+TGG | - | chr3.4:4200604-4200623 | None:intergenic | 40.0% | |
| AGCTCATAACACTAGAGAGA+AGG | - | chr3.4:4200689-4200708 | None:intergenic | 40.0% | |
| ATCGGGATCCTAGATATGAT+CGG | + | chr3.4:4199575-4199594 | MS.gene51624:intron | 40.0% | |
| ATGATGACTGGAGCTGATTA+AGG | + | chr3.4:4198465-4198484 | MS.gene51624:intron | 40.0% | |
| ATGTCGGTATCTTGTCATGT+TGG | - | chr3.4:4201053-4201072 | None:intergenic | 40.0% | |
| CACAACATTGTAGGTCTTAG+AGG | + | chr3.4:4199375-4199394 | MS.gene51624:intron | 40.0% | |
| CACTATTTGTTCCACTTCCA+TGG | + | chr3.4:4200816-4200835 | MS.gene51624:intron | 40.0% | |
| CAGAATGCGTAGAAACGTAA+CGG | + | chr3.4:4199995-4200014 | MS.gene51624:intron | 40.0% | |
| CATGAGATACGATGTGTTCA+AGG | + | chr3.4:4199544-4199563 | MS.gene51624:intron | 40.0% | |
| CCATGTCAATTATACTCTCC+AGG | + | chr3.4:4197724-4197743 | MS.gene51624:CDS | 40.0% | |
| CCCCATTTAAACTCTAGACT+AGG | + | chr3.4:4200884-4200903 | MS.gene51624:intron | 40.0% | |
| CTTTGATAGAAGCAGAAAGC+AGG | + | chr3.4:4198247-4198266 | MS.gene51624:CDS | 40.0% | |
| GACTGTTGCACATTAGAAAG+AGG | - | chr3.4:4198308-4198327 | None:intergenic | 40.0% | |
| GAGAATTAGGCAGAAACTTG+AGG | + | chr3.4:4197658-4197677 | MS.gene51624:CDS | 40.0% | |
| GATAAAGGACATTGACCAGA+AGG | - | chr3.4:4199156-4199175 | None:intergenic | 40.0% | |
| GCATAAAAAAGCCATGGAAG+TGG | - | chr3.4:4200830-4200849 | None:intergenic | 40.0% | |
| GGTTTGTCAAGACAAGTATG+AGG | + | chr3.4:4201388-4201407 | MS.gene51624:CDS | 40.0% | |
| GTAGTCATAACCACAGATGT+CGG | - | chr3.4:4201069-4201088 | None:intergenic | 40.0% | |
| GTGGGAAAAAACTTGGTTGT+CGG | - | chr3.4:4198807-4198826 | None:intergenic | 40.0% | |
| GTGTTCAAGGTAGTCAGAAT+CGG | + | chr3.4:4199557-4199576 | MS.gene51624:intron | 40.0% | |
| GTTATGAGCTCAAAGAATGC+CGG | + | chr3.4:4200699-4200718 | MS.gene51624:intron | 40.0% | |
| TACAAGCTGTGACTGTATGA+GGG | + | chr3.4:4199717-4199736 | MS.gene51624:intron | 40.0% | |
| TACAGCAGTTAATCACACTG+TGG | + | chr3.4:4199828-4199847 | MS.gene51624:intron | 40.0% | |
| TATACTCTCCAGGTTCTTTC+TGG | + | chr3.4:4197734-4197753 | MS.gene51624:intron | 40.0% | |
| TATCACAGAACACAGCGATA+GGG | + | chr3.4:4200060-4200079 | MS.gene51624:intron | 40.0% | |
| TATGCAACAAGTGTACATGC+TGG | + | chr3.4:4200307-4200326 | MS.gene51624:intron | 40.0% | |
| TCACTATTAGACTACCCTTC+TGG | + | chr3.4:4199138-4199157 | MS.gene51624:intron | 40.0% | |
| TCATACAGTCACAGCTTGTA+AGG | - | chr3.4:4199717-4199736 | None:intergenic | 40.0% | |
| TGATGACTGGAGCTGATTAA+GGG | + | chr3.4:4198466-4198485 | MS.gene51624:intron | 40.0% | |
| TGCAGCATATGTCAGAAACA+TGG | + | chr3.4:4198952-4198971 | MS.gene51624:intron | 40.0% | |
| TGTTCAAGGTAGTCAGAATC+GGG | + | chr3.4:4199558-4199577 | MS.gene51624:intron | 40.0% | |
| TGTTGTGCAAGGCCAAATAT+TGG | - | chr3.4:4199362-4199381 | None:intergenic | 40.0% | |
| TTAAGAGACCAGAAAGAACC+TGG | - | chr3.4:4197745-4197764 | None:intergenic | 40.0% | |
| TTACAAGCTGTGACTGTATG+AGG | + | chr3.4:4199716-4199735 | MS.gene51624:intron | 40.0% | |
| TTATCACAGAACACAGCGAT+AGG | + | chr3.4:4200059-4200078 | MS.gene51624:intron | 40.0% | |
| ! | ATTGACATGGTCTTGAACAG+GGG | - | chr3.4:4197714-4197733 | None:intergenic | 40.0% |
| ! | CCTGGAGAGTATAATTGACA+TGG | - | chr3.4:4197727-4197746 | None:intergenic | 40.0% |
| ! | CGTAAATTGATAGCAGACAG+TGG | - | chr3.4:4200032-4200051 | None:intergenic | 40.0% |
| ! | GTGTTATCAATCGCGGATTA+CGG | + | chr3.4:4198894-4198913 | MS.gene51624:intron | 40.0% |
| ! | TAAATGGGGACAAGAAGTGT+TGG | - | chr3.4:4200873-4200892 | None:intergenic | 40.0% |
| ! | TTGATAGCAGACAGTGGAAT+CGG | - | chr3.4:4200026-4200045 | None:intergenic | 40.0% |
| !! | ATTGGTGTTAATGACTGGAG+CGG | - | chr3.4:4199866-4199885 | None:intergenic | 40.0% |
| !! | ATTTTTAGGCTTTCCAGGTC+GGG | - | chr3.4:4199973-4199992 | None:intergenic | 40.0% |
| !! | CGCGATTGATAACACTGTTT+TGG | - | chr3.4:4198889-4198908 | None:intergenic | 40.0% |
| !! | CTGCAATTTTTAGGCTTTCC+AGG | - | chr3.4:4199978-4199997 | None:intergenic | 40.0% |
| !!! | GTGGGTTATGAACCCTTTTT+TGG | + | chr3.4:4199903-4199922 | MS.gene51624:intron | 40.0% |
| AGTGAAAGGTAGTGAGACCA+AGG | - | chr3.4:4199123-4199142 | None:intergenic | 45.0% | |
| ATCCTAGATATGATCGGGGA+AGG | + | chr3.4:4199581-4199600 | MS.gene51624:intron | 45.0% | |
| CAAAGTGACAGGGAGATAGA+AGG | - | chr3.4:4199499-4199518 | None:intergenic | 45.0% | |
| CAAGACTTCCACCTGAGTAA+AGG | - | chr3.4:4200214-4200233 | None:intergenic | 45.0% | |
| CCACACTCCACCAAATTCAT+TGG | - | chr3.4:4199884-4199903 | None:intergenic | 45.0% | |
| CCACCATACAAATGAAGCCA+TGG | + | chr3.4:4200760-4200779 | MS.gene51624:intron | 45.0% | |
| CCATGGCTTCATTTGTATGG+TGG | - | chr3.4:4200763-4200782 | None:intergenic | 45.0% | |
| GCAGTGCCATATTTATGTGG+CGG | - | chr3.4:4198935-4198954 | None:intergenic | 45.0% | |
| GCGCGTTGAAGACAAAAACA+CGG | - | chr3.4:4199178-4199197 | None:intergenic | 45.0% | |
| GCTGCAGTGCCATATTTATG+TGG | - | chr3.4:4198938-4198957 | None:intergenic | 45.0% | |
| GGATGAAAATGGAGGAAGTC+TGG | - | chr3.4:4199450-4199469 | None:intergenic | 45.0% | |
| GGTCATCTCTTATCCGATGT+AGG | - | chr3.4:4199661-4199680 | None:intergenic | 45.0% | |
| GTAATGCGCTTCAGAGTTTC+CGG | - | chr3.4:4200721-4200740 | None:intergenic | 45.0% | |
| GTCATGTTGGTATCCGATAC+TGG | - | chr3.4:4201040-4201059 | None:intergenic | 45.0% | |
| TAAGACACAGACACAGAGAC+CGG | - | chr3.4:4201110-4201129 | None:intergenic | 45.0% | |
| TCAAAGCTCCAACAGAAACC+TGG | + | chr3.4:4201413-4201432 | MS.gene51624:CDS | 45.0% | |
| TCATAGCTCCAGGTTTCTGT+TGG | - | chr3.4:4201424-4201443 | None:intergenic | 45.0% | |
| TCCTAGATATGATCGGGGAA+GGG | + | chr3.4:4199582-4199601 | MS.gene51624:intron | 45.0% | |
| TCGGGATCCTAGATATGATC+GGG | + | chr3.4:4199576-4199595 | MS.gene51624:intron | 45.0% | |
| TGACAAGATACCGACATCTG+TGG | + | chr3.4:4201056-4201075 | MS.gene51624:intron | 45.0% | |
| TGCATTGTGGCGTTATAGCA+TGG | - | chr3.4:4199023-4199042 | None:intergenic | 45.0% | |
| TTTCTGCTATGGCTGCATTG+TGG | - | chr3.4:4199036-4199055 | None:intergenic | 45.0% | |
| ! | ACTGTTGTCTGGAATGCCAA+AGG | - | chr3.4:4201528-4201547 | None:intergenic | 45.0% |
| ! | ATGAATTTGGTGGAGTGTGG+TGG | + | chr3.4:4199884-4199903 | MS.gene51624:intron | 45.0% |
| ! | CCAATGAATTTGGTGGAGTG+TGG | + | chr3.4:4199881-4199900 | MS.gene51624:intron | 45.0% |
| ! | TGAATTTGGTGGAGTGTGGT+GGG | + | chr3.4:4199885-4199904 | MS.gene51624:intron | 45.0% |
| ! | TTATCAATCGCGGATTACGG+TGG | + | chr3.4:4198897-4198916 | MS.gene51624:intron | 45.0% |
| !! | ACAAGAAGTGTTGGCAGTCA+TGG | - | chr3.4:4200864-4200883 | None:intergenic | 45.0% |
| !! | GGGTCGTTTTAACAGAAACC+AGG | + | chr3.4:4199939-4199958 | MS.gene51624:intron | 45.0% |
| !! | TTATGTGGCGGATTGTTAGC+TGG | - | chr3.4:4198923-4198942 | None:intergenic | 45.0% |
| !! | TTGGCCTTGCACAACATTGT+AGG | + | chr3.4:4199366-4199385 | MS.gene51624:intron | 45.0% |
| ACCCTTCCCCGATCATATCT+AGG | - | chr3.4:4199586-4199605 | None:intergenic | 50.0% | |
| AGCTGTGACTGTATGAGGGA+AGG | + | chr3.4:4199721-4199740 | MS.gene51624:intron | 50.0% | |
| CGGGATCCTAGATATGATCG+GGG | + | chr3.4:4199577-4199596 | MS.gene51624:intron | 50.0% | |
| TACATGCTGGCGTCATCTCT+TGG | + | chr3.4:4200320-4200339 | MS.gene51624:intron | 50.0% | |
| TTGAATCGCTTCGTCAGCAC+AGG | - | chr3.4:4201459-4201478 | None:intergenic | 50.0% | |
| ! | GTGGAAGTCTTGTGTTTCCG+TGG | + | chr3.4:4200222-4200241 | MS.gene51624:intron | 50.0% |
| GCAGCAGCTGAAGCGCAATT+AGG | + | chr3.4:4197629-4197648 | MS.gene51624:CDS | 55.0% | |
| CCAGGACGTGTAACCCGACC+TGG | + | chr3.4:4199957-4199976 | MS.gene51624:intron | 65.0% | |
| CCAGGTCGGGTTACACGTCC+TGG | - | chr3.4:4199960-4199979 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 4197617 | 4201556 | 4197617 | ID=MS.gene51624 |
| chr3.4 | mRNA | 4197617 | 4201556 | 4197617 | ID=MS.gene51624.t1;Parent=MS.gene51624 |
| chr3.4 | exon | 4197617 | 4197745 | 4197617 | ID=MS.gene51624.t1.exon1;Parent=MS.gene51624.t1 |
| chr3.4 | CDS | 4197617 | 4197745 | 4197617 | ID=cds.MS.gene51624.t1;Parent=MS.gene51624.t1 |
| chr3.4 | exon | 4198218 | 4198355 | 4198218 | ID=MS.gene51624.t1.exon2;Parent=MS.gene51624.t1 |
| chr3.4 | CDS | 4198218 | 4198355 | 4198218 | ID=cds.MS.gene51624.t1;Parent=MS.gene51624.t1 |
| chr3.4 | exon | 4201365 | 4201556 | 4201365 | ID=MS.gene51624.t1.exon3;Parent=MS.gene51624.t1 |
| chr3.4 | CDS | 4201365 | 4201556 | 4201365 | ID=cds.MS.gene51624.t1;Parent=MS.gene51624.t1 |
| Gene Sequence |
| Protein sequence |
