Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84381.t1 | XP_003598260.1 | 96.7 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 2.10E-75 | 291.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84381.t1 | Q2HJI3 | 27.6 | 105 | 73 | 2 | 42 | 143 | 28 | 132 | 7.3e-08 | 58.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84381.t1 | G7IYL4 | 96.7 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 1.5e-75 | 291.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05188 | MS.gene84381 | 0.829359 | 5.38E-55 | -1.69E-46 |
| MS.gene051975 | MS.gene84381 | 0.808769 | 2.63E-50 | -1.69E-46 |
| MS.gene056403 | MS.gene84381 | 0.835757 | 1.39E-56 | -1.69E-46 |
| MS.gene056605 | MS.gene84381 | 0.83491 | 2.28E-56 | -1.69E-46 |
| MS.gene05689 | MS.gene84381 | 0.817773 | 2.77E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene84381 | 0.818067 | 2.38E-52 | -1.69E-46 |
| MS.gene06011 | MS.gene84381 | 0.800399 | 1.47E-48 | -1.69E-46 |
| MS.gene060830 | MS.gene84381 | 0.864082 | 1.57E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009452 | MS.gene84381 | PPI |
| MS.gene84381 | MS.gene51624 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84381.t1 | MTR_3g009130 | 96.711 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 1.29e-108 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84381.t1 | AT2G31725 | 62.416 | 149 | 55 | 1 | 1 | 148 | 1 | 149 | 8.79e-71 | 210 |
| MS.gene84381.t1 | AT1G05730 | 60.403 | 149 | 58 | 1 | 1 | 148 | 1 | 149 | 3.89e-68 | 203 |
| MS.gene84381.t1 | AT2G43720 | 51.389 | 144 | 69 | 1 | 6 | 148 | 4 | 147 | 2.76e-55 | 171 |
| MS.gene84381.t1 | AT1G05730 | 59.259 | 108 | 43 | 1 | 42 | 148 | 10 | 117 | 4.88e-45 | 144 |
| MS.gene84381.t1 | AT1G05740 | 45.652 | 138 | 62 | 2 | 1 | 125 | 1 | 138 | 1.43e-41 | 135 |
| MS.gene84381.t1 | AT2G43720 | 50.926 | 108 | 52 | 1 | 42 | 148 | 1 | 108 | 2.56e-39 | 129 |
Find 24 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAGATGGCAAAGTTTC+AGG | 0.195239 | 3.1:+4589262 | MS.gene84381:CDS |
| CTCATATGCACATTTAAAAT+AGG | 0.309655 | 3.1:-4589150 | None:intergenic |
| AATTAGGTCAACAGAGAATT+AGG | 0.348786 | 3.1:+4588573 | MS.gene84381:CDS |
| GCAGCAGCTGAAGCGCAATT+AGG | 0.389975 | 3.1:+4588557 | MS.gene84381:CDS |
| TAATTGACATGGTCTTGAAC+AGG | 0.399803 | 3.1:-4588641 | None:intergenic |
| TTCTAGGAAGAACTGTTGTC+TGG | 0.450400 | 3.1:-4592474 | None:intergenic |
| TCATAGCTCCAGGTTTCTGT+TGG | 0.458233 | 3.1:-4592359 | None:intergenic |
| AACAAGTTGAAAGCTTCCTT+TGG | 0.460762 | 3.1:+4592447 | MS.gene84381:CDS |
| GAAGTTGAATAGATCTATGA+TGG | 0.466964 | 3.1:+4592305 | MS.gene84381:CDS |
| ATCATATCATTCATAGCTCC+AGG | 0.479620 | 3.1:-4592369 | None:intergenic |
| TCAAAGCTCCAACAGAAACC+TGG | 0.503368 | 3.1:+4592351 | MS.gene84381:CDS |
| GGTTTGTCAAGACAAGTATG+AGG | 0.511683 | 3.1:+4592326 | MS.gene84381:CDS |
| GACTGTTGCACATTAGAAAG+AGG | 0.512334 | 3.1:-4589233 | None:intergenic |
| CCATGTCAATTATACTCTCC+AGG | 0.522500 | 3.1:+4588652 | MS.gene84381:CDS |
| TTGAATCGCTTCGTCAGCAC+AGG | 0.525639 | 3.1:-4592394 | None:intergenic |
| CTTTGATAGAAGCAGAAAGC+AGG | 0.531953 | 3.1:+4589175 | MS.gene84381:CDS |
| TTCAACTTGTTCGTAAGAAG+CGG | 0.544894 | 3.1:-4592435 | None:intergenic |
| GAGAATTAGGCAGAAACTTG+AGG | 0.580267 | 3.1:+4588586 | MS.gene84381:CDS |
| AATTGACATGGTCTTGAACA+GGG | 0.588865 | 3.1:-4588640 | None:intergenic |
| ACAGTCATTTGAAAATGAGA+TGG | 0.593900 | 3.1:+4589250 | MS.gene84381:CDS |
| CCTGGAGAGTATAATTGACA+TGG | 0.606570 | 3.1:-4588652 | None:intergenic |
| ATTGACATGGTCTTGAACAG+GGG | 0.619900 | 3.1:-4588639 | None:intergenic |
| ACTGTTGTCTGGAATGCCAA+AGG | 0.633485 | 3.1:-4592463 | None:intergenic |
| GTTTGTCAAGACAAGTATGA+GGG | 0.640452 | 3.1:+4592327 | MS.gene84381:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGAATCAAAATAAAAA+AGG | - | chr3.1:4588873-4588892 | None:intergenic | 10.0% |
| !!! | TTTGAAATTTTAATATAGAT+AGG | + | chr3.1:4589026-4589045 | MS.gene84381:intron | 10.0% |
| !! | AAATTCTATTTATCAGTAAA+AGG | - | chr3.1:4589088-4589107 | None:intergenic | 15.0% |
| !! | AATTCTATTTATCAGTAAAA+GGG | - | chr3.1:4589087-4589106 | None:intergenic | 15.0% |
| !! | CAAGGTATAAATAAATAATT+TGG | - | chr3.1:4592174-4592193 | None:intergenic | 15.0% |
| !! | TCAAAAGTTAAATTAATACA+AGG | - | chr3.1:4592192-4592211 | None:intergenic | 15.0% |
| !!! | AAATTAATTTTCTATGATGT+GGG | + | chr3.1:4591401-4591420 | MS.gene84381:intron | 15.0% |
| !!! | TATTAAAATTTCAAAGCATT+TGG | - | chr3.1:4589021-4589040 | None:intergenic | 15.0% |
| !!! | TTTATAATTCTTGGTTTTAA+AGG | + | chr3.1:4588964-4588983 | MS.gene84381:intron | 15.0% |
| !! | AAAAAATTCTTAAGTTTGAG+TGG | + | chr3.1:4590345-4590364 | MS.gene84381:intron | 20.0% |
| !! | AAACCATTTAGAAAGATTAA+GGG | - | chr3.1:4590025-4590044 | None:intergenic | 20.0% |
| !! | AATTAAAAGTAGGATGAAAA+TGG | - | chr3.1:4590399-4590418 | None:intergenic | 20.0% |
| !! | CACATCATAGAAAATTAATT+TGG | - | chr3.1:4591402-4591421 | None:intergenic | 20.0% |
| !! | GAAATGATTAAGATAGAAAA+AGG | + | chr3.1:4591309-4591328 | MS.gene84381:intron | 20.0% |
| !! | GAATAAGCGTAATAAATTAT+AGG | - | chr3.1:4592090-4592109 | None:intergenic | 20.0% |
| !! | TAAACCATTTAGAAAGATTA+AGG | - | chr3.1:4590026-4590045 | None:intergenic | 20.0% |
| !! | TAGAATCAAATTAAAAGAAG+TGG | - | chr3.1:4589375-4589394 | None:intergenic | 20.0% |
| !! | TCTTTCATTGTAATATTGAA+TGG | + | chr3.1:4588753-4588772 | MS.gene84381:intron | 20.0% |
| !! | TGAATCAAAATAAAAAAGGA+AGG | - | chr3.1:4588869-4588888 | None:intergenic | 20.0% |
| !! | TTGCATATAATGGTAATATT+CGG | + | chr3.1:4589057-4589076 | MS.gene84381:intron | 20.0% |
| !!! | AAATTAAGTGTTGTAGAAAA+CGG | - | chr3.1:4591561-4591580 | None:intergenic | 20.0% |
| !!! | ACACATTGTTTTTTATAATG+TGG | - | chr3.1:4591355-4591374 | None:intergenic | 20.0% |
| !!! | AGATCTTTTTACATGTTTTT+GGG | + | chr3.1:4591375-4591394 | MS.gene84381:intron | 20.0% |
| !!! | ATAAACTCATGTCATTTATT+TGG | + | chr3.1:4589800-4589819 | MS.gene84381:intron | 20.0% |
| !!! | CAAATTAATTTTCTATGATG+TGG | + | chr3.1:4591400-4591419 | MS.gene84381:intron | 20.0% |
| !!! | GCTTTCAATTTTATAGAATA+GGG | + | chr3.1:4589583-4589602 | MS.gene84381:intron | 20.0% |
| !!! | GTAATATTGAATGGTTTTAT+TGG | + | chr3.1:4588762-4588781 | MS.gene84381:intron | 20.0% |
| !!! | TAGATCTTTTTACATGTTTT+TGG | + | chr3.1:4591374-4591393 | MS.gene84381:intron | 20.0% |
| !!! | TGCTTTCAATTTTATAGAAT+AGG | + | chr3.1:4589582-4589601 | MS.gene84381:intron | 20.0% |
| !!! | TGTTTTTTATAATGTGGAAA+AGG | - | chr3.1:4591349-4591368 | None:intergenic | 20.0% |
| !!! | TTCATAAATTTTTCAGTAGT+TGG | + | chr3.1:4591589-4591608 | MS.gene84381:intron | 20.0% |
| ! | AGAAACATGGTGTATATAAT+AGG | + | chr3.1:4589903-4589922 | MS.gene84381:intron | 25.0% |
| ! | AGGAACATATAATACATTCA+TGG | - | chr3.1:4591062-4591081 | None:intergenic | 25.0% |
| ! | AGTTACAAGAAAACCAAAAA+AGG | - | chr3.1:4590857-4590876 | None:intergenic | 25.0% |
| ! | ATATATGCATAAAAAAGCCA+TGG | - | chr3.1:4591774-4591793 | None:intergenic | 25.0% |
| ! | ATCAGAGAATATATCTATTG+AGG | - | chr3.1:4591519-4591538 | None:intergenic | 25.0% |
| ! | ATTACAGTCTCAATTGTATT+CGG | + | chr3.1:4591674-4591693 | MS.gene84381:intron | 25.0% |
| ! | ATTCATAGTACTTAACATTG+TGG | + | chr3.1:4590239-4590258 | MS.gene84381:intron | 25.0% |
| ! | CAATCAAACAATCAACAATA+CGG | - | chr3.1:4589116-4589135 | None:intergenic | 25.0% |
| ! | CACAAATCAAAATTTAGAGA+TGG | - | chr3.1:4591092-4591111 | None:intergenic | 25.0% |
| ! | GCTTATTATTGTCCAATATT+TGG | + | chr3.1:4590285-4590304 | MS.gene84381:intron | 25.0% |
| ! | GTAGTTCATATTTAGGAATT+AGG | - | chr3.1:4588930-4588949 | None:intergenic | 25.0% |
| ! | GTTACAAGAAAACCAAAAAA+GGG | - | chr3.1:4590856-4590875 | None:intergenic | 25.0% |
| ! | TAATGTCATAAGTACTTCAA+TGG | + | chr3.1:4588690-4588709 | MS.gene84381:intron | 25.0% |
| ! | TATTGAGGTAAGCAAAAATT+AGG | - | chr3.1:4591504-4591523 | None:intergenic | 25.0% |
| ! | TCAACCATAGAATTAAAAGT+AGG | - | chr3.1:4590409-4590428 | None:intergenic | 25.0% |
| ! | TCATGTAGTAGTTCATATTT+AGG | - | chr3.1:4588937-4588956 | None:intergenic | 25.0% |
| ! | TTTAGAAAGATTAAGGGAAA+TGG | - | chr3.1:4590019-4590038 | None:intergenic | 25.0% |
| ! | TTTCATCAGATAGAGAAAAT+AGG | - | chr3.1:4589512-4589531 | None:intergenic | 25.0% |
| ! | TTTCCCTTAATCTTTCTAAA+TGG | + | chr3.1:4590019-4590038 | MS.gene84381:intron | 25.0% |
| !! | AAGATTTCAATCTGAAATGT+CGG | - | chr3.1:4591953-4591972 | None:intergenic | 25.0% |
| !! | ATCTAATAGTGTTTTCAACA+TGG | + | chr3.1:4592275-4592294 | MS.gene84381:intron | 25.0% |
| !! | CCATTTTCTCAAATTATTAC+CGG | + | chr3.1:4592026-4592045 | MS.gene84381:intron | 25.0% |
| !! | CTCATATGCACATTTAAAAT+AGG | - | chr3.1:4589153-4589172 | None:intergenic | 25.0% |
| !! | GACATGTCTTTTATAATTCT+TGG | + | chr3.1:4588955-4588974 | MS.gene84381:intron | 25.0% |
| !! | GTAAAAGAAAGTATATCGAA+TGG | - | chr3.1:4591130-4591149 | None:intergenic | 25.0% |
| !! | TCTAACTTTTAAATGATGAC+TGG | + | chr3.1:4589391-4589410 | MS.gene84381:intron | 25.0% |
| !!! | ATGTTTAGTTCTAATCAAAG+TGG | - | chr3.1:4589563-4589582 | None:intergenic | 25.0% |
| !!! | ATTTTAACATGCTATCAAAG+CGG | + | chr3.1:4589531-4589550 | MS.gene84381:intron | 25.0% |
| !!! | ATTTTGGTAACAAATCTATG+TGG | - | chr3.1:4589632-4589651 | None:intergenic | 25.0% |
| !!! | TCATCCTACTTTTAATTCTA+TGG | + | chr3.1:4590402-4590421 | MS.gene84381:intron | 25.0% |
| !!! | TTTTTGGTTTTCTTGTAACT+GGG | + | chr3.1:4590857-4590876 | MS.gene84381:intron | 25.0% |
| !!! | TTTTTTGGTTTTCTTGTAAC+TGG | + | chr3.1:4590856-4590875 | MS.gene84381:intron | 25.0% |
| AAAAAAGGAAGGAAAAATGC+AGG | - | chr3.1:4588858-4588877 | None:intergenic | 30.0% | |
| AATTAGGTCAACAGAGAATT+AGG | + | chr3.1:4588573-4588592 | MS.gene84381:CDS | 30.0% | |
| ACAGTCATTTGAAAATGAGA+TGG | + | chr3.1:4589250-4589269 | MS.gene84381:CDS | 30.0% | |
| ACATTCATGGTAGTCAAAAT+CGG | - | chr3.1:4591049-4591068 | None:intergenic | 30.0% | |
| AGACATATAAAGACAAACCA+CGG | - | chr3.1:4591180-4591199 | None:intergenic | 30.0% | |
| AGATGTATGTAGCAGTTATT+GGG | + | chr3.1:4590718-4590737 | MS.gene84381:intron | 30.0% | |
| ATCGTTAAATAGTCCTACAT+CGG | + | chr3.1:4590583-4590602 | MS.gene84381:intron | 30.0% | |
| ATTAACACCAATGAATTTGG+TGG | + | chr3.1:4590812-4590831 | MS.gene84381:intron | 30.0% | |
| ATTGAAATCTTCTCCAGTAT+CGG | + | chr3.1:4591962-4591981 | MS.gene84381:intron | 30.0% | |
| CAAAATTTAGAGATGGCAAT+TGG | - | chr3.1:4591085-4591104 | None:intergenic | 30.0% | |
| CAATAATAAGCAAGCAAACT+TGG | - | chr3.1:4590276-4590295 | None:intergenic | 30.0% | |
| CACATAAAGCAAGATAAGAT+TGG | - | chr3.1:4590216-4590235 | None:intergenic | 30.0% | |
| CACTATTAGATCAAATACGA+AGG | - | chr3.1:4592266-4592285 | None:intergenic | 30.0% | |
| CACTTTGTATAATGAACCTA+AGG | + | chr3.1:4590450-4590469 | MS.gene84381:intron | 30.0% | |
| CAGATAGAGAAAATAGGAAA+GGG | - | chr3.1:4589506-4589525 | None:intergenic | 30.0% | |
| CCGGTAATAATTTGAGAAAA+TGG | - | chr3.1:4592029-4592048 | None:intergenic | 30.0% | |
| CTGAGAATGTGTTTATAAGT+GGG | + | chr3.1:4590618-4590637 | MS.gene84381:intron | 30.0% | |
| GAAGTTGAATAGATCTATGA+TGG | + | chr3.1:4592305-4592324 | MS.gene84381:CDS | 30.0% | |
| GTCATTAACACCAATGAATT+TGG | + | chr3.1:4590809-4590828 | MS.gene84381:intron | 30.0% | |
| GTTCATTATACAAAGTGACA+GGG | - | chr3.1:4590447-4590466 | None:intergenic | 30.0% | |
| TAAAAGTAGGATGAAAATGG+AGG | - | chr3.1:4590396-4590415 | None:intergenic | 30.0% | |
| TAAATAGTAGGATCGTAACA+CGG | + | chr3.1:4590554-4590573 | MS.gene84381:intron | 30.0% | |
| TAGCAGAAATTTGACAACAA+TGG | + | chr3.1:4589985-4590004 | MS.gene84381:intron | 30.0% | |
| TCAGATAGAGAAAATAGGAA+AGG | - | chr3.1:4589507-4589526 | None:intergenic | 30.0% | |
| TCTTATATGACAATGCTTCA+AGG | - | chr3.1:4592243-4592262 | None:intergenic | 30.0% | |
| TGAAATAGAGACAAGAGAAA+AGG | - | chr3.1:4589458-4589477 | None:intergenic | 30.0% | |
| TGAGAATGTGTTTATAAGTG+GGG | + | chr3.1:4590619-4590638 | MS.gene84381:intron | 30.0% | |
| TTGTTGTCAAATTTCTGCTA+TGG | - | chr3.1:4589985-4590004 | None:intergenic | 30.0% | |
| ! | ACCTAGTCTAGAGTTTAAAT+GGG | - | chr3.1:4591826-4591845 | None:intergenic | 30.0% |
| ! | ACTTTCTTTTACCTTTACTC+AGG | + | chr3.1:4591138-4591157 | MS.gene84381:intron | 30.0% |
| ! | GGTAATGCTTTTGCATATAA+TGG | + | chr3.1:4589047-4589066 | MS.gene84381:intron | 30.0% |
| ! | GTGGGTTTCTTAATTTTCTT+TGG | + | chr3.1:4591419-4591438 | MS.gene84381:intron | 30.0% |
| ! | GTTTAAGCTATAGTTTTCCT+TGG | + | chr3.1:4590041-4590060 | MS.gene84381:intron | 30.0% |
| !! | AATTCATTGGTGTTAATGAC+TGG | - | chr3.1:4590809-4590828 | None:intergenic | 30.0% |
| !! | TTAGTTCTAATCAAAGTGGA+TGG | - | chr3.1:4589559-4589578 | None:intergenic | 30.0% |
| !! | TTTTTCCCACTAGTTGATAT+TGG | + | chr3.1:4589755-4589774 | MS.gene84381:intron | 30.0% |
| AAATGAGATGGCAAAGTTTC+AGG | + | chr3.1:4589262-4589281 | MS.gene84381:CDS | 35.0% | |
| AACAATCCGCCACATAAATA+TGG | + | chr3.1:4589864-4589883 | MS.gene84381:intron | 35.0% | |
| AACATAGACACCAAACTAAG+AGG | - | chr3.1:4589686-4589705 | None:intergenic | 35.0% | |
| AAGGGTAGTCTAATAGTGAA+AGG | - | chr3.1:4590075-4590094 | None:intergenic | 35.0% | |
| AATTTAGAGATGGCAATTGG+AGG | - | chr3.1:4591082-4591101 | None:intergenic | 35.0% | |
| AGATGATCAATGAGATTGTG+AGG | - | chr3.1:4591457-4591476 | None:intergenic | 35.0% | |
| ATAAAGGACATTGACCAGAA+GGG | - | chr3.1:4590093-4590112 | None:intergenic | 35.0% | |
| ATACCATGGCTTCATTTGTA+TGG | - | chr3.1:4591704-4591723 | None:intergenic | 35.0% | |
| ATCATATCATTCATAGCTCC+AGG | - | chr3.1:4592372-4592391 | None:intergenic | 35.0% | |
| ATGTAGCCAATATCAACTAG+TGG | - | chr3.1:4589764-4589783 | None:intergenic | 35.0% | |
| CAAAAAATTAGCTAGCCAGA+TGG | - | chr3.1:4588834-4588853 | None:intergenic | 35.0% | |
| CAAAACAGTGTTATCAATCG+CGG | + | chr3.1:4589825-4589844 | MS.gene84381:intron | 35.0% | |
| CCACTTATAAACACATTCTC+AGG | - | chr3.1:4590620-4590639 | None:intergenic | 35.0% | |
| CCTGAGAATGTGTTTATAAG+TGG | + | chr3.1:4590617-4590636 | MS.gene84381:intron | 35.0% | |
| GAAGACAAAAACACGGATAA+AGG | - | chr3.1:4590109-4590128 | None:intergenic | 35.0% | |
| GAGAATGTGTTTATAAGTGG+GGG | + | chr3.1:4590620-4590639 | MS.gene84381:intron | 35.0% | |
| GAGATGTATGTAGCAGTTAT+TGG | + | chr3.1:4590717-4590736 | MS.gene84381:intron | 35.0% | |
| GAGGAAGACAAGTATAAAAC+TGG | - | chr3.1:4589667-4589686 | None:intergenic | 35.0% | |
| GCAAGAAAGTTAATACCATC+TGG | + | chr3.1:4588816-4588835 | MS.gene84381:intron | 35.0% | |
| GGGACAATGATCATTGTATT+GGG | + | chr3.1:4590738-4590757 | MS.gene84381:intron | 35.0% | |
| GGTTCATTATACAAAGTGAC+AGG | - | chr3.1:4590448-4590467 | None:intergenic | 35.0% | |
| GTAACAAATCTATGTGGAAC+TGG | - | chr3.1:4589626-4589645 | None:intergenic | 35.0% | |
| GTAGAAAACGGCTAATAGTA+AGG | - | chr3.1:4591549-4591568 | None:intergenic | 35.0% | |
| GTCACAAGATCGTAAATAGT+AGG | + | chr3.1:4590542-4590561 | MS.gene84381:intron | 35.0% | |
| GTTTGTCAAGACAAGTATGA+GGG | + | chr3.1:4592327-4592346 | MS.gene84381:CDS | 35.0% | |
| TACAAATGAAGCCATGGTAT+AGG | + | chr3.1:4591704-4591723 | MS.gene84381:intron | 35.0% | |
| TACTTGTCTTCCTCTTAGTT+TGG | + | chr3.1:4589673-4589692 | MS.gene84381:intron | 35.0% | |
| TCAACTAGTGGGAAAAAACT+TGG | - | chr3.1:4589752-4589771 | None:intergenic | 35.0% | |
| TGAAAGCTGCTAGAAAATCA+AGG | + | chr3.1:4591851-4591870 | MS.gene84381:intron | 35.0% | |
| TGGAACTGGAAATCTAAACA+AGG | - | chr3.1:4589612-4589631 | None:intergenic | 35.0% | |
| TGGGACAATGATCATTGTAT+TGG | + | chr3.1:4590737-4590756 | MS.gene84381:intron | 35.0% | |
| TGTAGCCAATATCAACTAGT+GGG | - | chr3.1:4589763-4589782 | None:intergenic | 35.0% | |
| ! | AACAAGTTGAAAGCTTCCTT+TGG | + | chr3.1:4592447-4592466 | MS.gene84381:CDS | 35.0% |
| ! | AATTGACATGGTCTTGAACA+GGG | - | chr3.1:4588643-4588662 | None:intergenic | 35.0% |
| ! | ACTGTAGAGATTCGTTTTAG+TGG | - | chr3.1:4590148-4590167 | None:intergenic | 35.0% |
| ! | ATAGTGAAGCGTTAACAACT+CGG | - | chr3.1:4591740-4591759 | None:intergenic | 35.0% |
| ! | CCTAGTCTAGAGTTTAAATG+GGG | - | chr3.1:4591825-4591844 | None:intergenic | 35.0% |
| ! | CTACGCATTCTGCAATTTTT+AGG | - | chr3.1:4590925-4590944 | None:intergenic | 35.0% |
| ! | CTGGATGACGATTACAATTT+TGG | - | chr3.1:4589648-4589667 | None:intergenic | 35.0% |
| ! | GACCTAGTCTAGAGTTTAAA+TGG | - | chr3.1:4591827-4591846 | None:intergenic | 35.0% |
| ! | GTCTTGATTTTCCTATACCA+TGG | - | chr3.1:4591718-4591737 | None:intergenic | 35.0% |
| ! | TAATTGACATGGTCTTGAAC+AGG | - | chr3.1:4588644-4588663 | None:intergenic | 35.0% |
| ! | TAGTGTTTTCAACATGGTAC+AGG | + | chr3.1:4592281-4592300 | MS.gene84381:intron | 35.0% |
| ! | TATAATAGGTGTTGCGCTTA+TGG | + | chr3.1:4589917-4589936 | MS.gene84381:intron | 35.0% |
| ! | TTCAACTTGTTCGTAAGAAG+CGG | - | chr3.1:4592438-4592457 | None:intergenic | 35.0% |
| ! | TTCTTTTACCTTTACTCAGG+TGG | + | chr3.1:4591141-4591160 | MS.gene84381:intron | 35.0% |
| !! | AATTTTTAGGCTTTCCAGGT+CGG | - | chr3.1:4590912-4590931 | None:intergenic | 35.0% |
| !! | GCGATTGATAACACTGTTTT+GGG | - | chr3.1:4589826-4589845 | None:intergenic | 35.0% |
| !! | TCTCATGTTTTAAGCACCTT+AGG | - | chr3.1:4590469-4590488 | None:intergenic | 35.0% |
| AACATTGTAGGTCTTAGAGG+CGG | + | chr3.1:4590316-4590335 | MS.gene84381:intron | 40.0% | |
| AAGACCTACAATGTTGTGCA+AGG | - | chr3.1:4590311-4590330 | None:intergenic | 40.0% | |
| ACAGCAGTTAATCACACTGT+GGG | + | chr3.1:4590767-4590786 | MS.gene84381:intron | 40.0% | |
| ACGGCTAATAGTAAGGTAGT+TGG | - | chr3.1:4591542-4591561 | None:intergenic | 40.0% | |
| AGCTCATAACACTAGAGAGA+AGG | - | chr3.1:4591627-4591646 | None:intergenic | 40.0% | |
| ATCGGGATCCTAGATATGAT+CGG | + | chr3.1:4590513-4590532 | MS.gene84381:intron | 40.0% | |
| ATGATGACTGGAGCTGATTA+AGG | + | chr3.1:4589403-4589422 | MS.gene84381:intron | 40.0% | |
| ATGTCGGTATCTTGTCATGT+TGG | - | chr3.1:4591991-4592010 | None:intergenic | 40.0% | |
| CACAACATTGTAGGTCTTAG+AGG | + | chr3.1:4590313-4590332 | MS.gene84381:intron | 40.0% | |
| CACTATTTGTTCCACTTCCA+TGG | + | chr3.1:4591754-4591773 | MS.gene84381:intron | 40.0% | |
| CAGAATGCGTAGAAACGTAA+CGG | + | chr3.1:4590933-4590952 | MS.gene84381:intron | 40.0% | |
| CATGAGATACGATGTGTTCA+AGG | + | chr3.1:4590482-4590501 | MS.gene84381:intron | 40.0% | |
| CCATGTCAATTATACTCTCC+AGG | + | chr3.1:4588652-4588671 | MS.gene84381:CDS | 40.0% | |
| CCCCATTTAAACTCTAGACT+AGG | + | chr3.1:4591822-4591841 | MS.gene84381:intron | 40.0% | |
| CTTTGATAGAAGCAGAAAGC+AGG | + | chr3.1:4589175-4589194 | MS.gene84381:CDS | 40.0% | |
| GACTGTTGCACATTAGAAAG+AGG | - | chr3.1:4589236-4589255 | None:intergenic | 40.0% | |
| GAGAATTAGGCAGAAACTTG+AGG | + | chr3.1:4588586-4588605 | MS.gene84381:CDS | 40.0% | |
| GATAAAGGACATTGACCAGA+AGG | - | chr3.1:4590094-4590113 | None:intergenic | 40.0% | |
| GCATAAAAAAGCCATGGAAG+TGG | - | chr3.1:4591768-4591787 | None:intergenic | 40.0% | |
| GGTTTGTCAAGACAAGTATG+AGG | + | chr3.1:4592326-4592345 | MS.gene84381:CDS | 40.0% | |
| GTAGTCATAACCACAGATGT+CGG | - | chr3.1:4592007-4592026 | None:intergenic | 40.0% | |
| GTGGGAAAAAACTTGGTTGT+CGG | - | chr3.1:4589745-4589764 | None:intergenic | 40.0% | |
| GTGTTCAAGGTAGTCAGAAT+CGG | + | chr3.1:4590495-4590514 | MS.gene84381:intron | 40.0% | |
| GTTATGAGCTCAAAGAATGC+CGG | + | chr3.1:4591637-4591656 | MS.gene84381:intron | 40.0% | |
| TACAAGCTGTGACTGTATGA+GGG | + | chr3.1:4590655-4590674 | MS.gene84381:intron | 40.0% | |
| TACAGCAGTTAATCACACTG+TGG | + | chr3.1:4590766-4590785 | MS.gene84381:intron | 40.0% | |
| TATACTCTCCAGGTTCTTTC+TGG | + | chr3.1:4588662-4588681 | MS.gene84381:intron | 40.0% | |
| TATCACAGAACACAGCGATA+GGG | + | chr3.1:4590998-4591017 | MS.gene84381:intron | 40.0% | |
| TATGCAACAAGTGTACATGC+TGG | + | chr3.1:4591245-4591264 | MS.gene84381:intron | 40.0% | |
| TCACTATTAGACTACCCTTC+TGG | + | chr3.1:4590076-4590095 | MS.gene84381:intron | 40.0% | |
| TCATACAGTCACAGCTTGTA+AGG | - | chr3.1:4590655-4590674 | None:intergenic | 40.0% | |
| TGATGACTGGAGCTGATTAA+GGG | + | chr3.1:4589404-4589423 | MS.gene84381:intron | 40.0% | |
| TGCAGCATATGTCAGAAACA+TGG | + | chr3.1:4589890-4589909 | MS.gene84381:intron | 40.0% | |
| TGTTCAAGGTAGTCAGAATC+GGG | + | chr3.1:4590496-4590515 | MS.gene84381:intron | 40.0% | |
| TGTTGTGCAAGGCCAAATAT+TGG | - | chr3.1:4590300-4590319 | None:intergenic | 40.0% | |
| TTAAGAGACCAGAAAGAACC+TGG | - | chr3.1:4588673-4588692 | None:intergenic | 40.0% | |
| TTACAAGCTGTGACTGTATG+AGG | + | chr3.1:4590654-4590673 | MS.gene84381:intron | 40.0% | |
| TTATCACAGAACACAGCGAT+AGG | + | chr3.1:4590997-4591016 | MS.gene84381:intron | 40.0% | |
| ! | ATTGACATGGTCTTGAACAG+GGG | - | chr3.1:4588642-4588661 | None:intergenic | 40.0% |
| ! | CCTGGAGAGTATAATTGACA+TGG | - | chr3.1:4588655-4588674 | None:intergenic | 40.0% |
| ! | CGTAAATTGATAGCAGACAG+TGG | - | chr3.1:4590970-4590989 | None:intergenic | 40.0% |
| ! | GTGTTATCAATCGCGGATTA+CGG | + | chr3.1:4589832-4589851 | MS.gene84381:intron | 40.0% |
| ! | TAAATGGGGACAAGAAGTGT+TGG | - | chr3.1:4591811-4591830 | None:intergenic | 40.0% |
| ! | TTGATAGCAGACAGTGGAAT+CGG | - | chr3.1:4590964-4590983 | None:intergenic | 40.0% |
| !! | ATTGGTGTTAATGACTGGAG+CGG | - | chr3.1:4590804-4590823 | None:intergenic | 40.0% |
| !! | ATTTTTAGGCTTTCCAGGTC+GGG | - | chr3.1:4590911-4590930 | None:intergenic | 40.0% |
| !! | CGCGATTGATAACACTGTTT+TGG | - | chr3.1:4589827-4589846 | None:intergenic | 40.0% |
| !! | CTGCAATTTTTAGGCTTTCC+AGG | - | chr3.1:4590916-4590935 | None:intergenic | 40.0% |
| !!! | GTGGGTTATGAACCCTTTTT+TGG | + | chr3.1:4590841-4590860 | MS.gene84381:intron | 40.0% |
| AGTGAAAGGTAGTGAGACCA+AGG | - | chr3.1:4590061-4590080 | None:intergenic | 45.0% | |
| ATCCTAGATATGATCGGGGA+AGG | + | chr3.1:4590519-4590538 | MS.gene84381:intron | 45.0% | |
| CAAAGTGACAGGGAGATAGA+AGG | - | chr3.1:4590437-4590456 | None:intergenic | 45.0% | |
| CAAGACTTCCACCTGAGTAA+AGG | - | chr3.1:4591152-4591171 | None:intergenic | 45.0% | |
| CCACACTCCACCAAATTCAT+TGG | - | chr3.1:4590822-4590841 | None:intergenic | 45.0% | |
| CCACCATACAAATGAAGCCA+TGG | + | chr3.1:4591698-4591717 | MS.gene84381:intron | 45.0% | |
| CCATGGCTTCATTTGTATGG+TGG | - | chr3.1:4591701-4591720 | None:intergenic | 45.0% | |
| GCAGTGCCATATTTATGTGG+CGG | - | chr3.1:4589873-4589892 | None:intergenic | 45.0% | |
| GCGCGTTGAAGACAAAAACA+CGG | - | chr3.1:4590116-4590135 | None:intergenic | 45.0% | |
| GCTGCAGTGCCATATTTATG+TGG | - | chr3.1:4589876-4589895 | None:intergenic | 45.0% | |
| GGATGAAAATGGAGGAAGTC+TGG | - | chr3.1:4590388-4590407 | None:intergenic | 45.0% | |
| GGTCATCTCTTATCCGATGT+AGG | - | chr3.1:4590599-4590618 | None:intergenic | 45.0% | |
| GTAATGCGCTTCAGAGTTTC+CGG | - | chr3.1:4591659-4591678 | None:intergenic | 45.0% | |
| GTCATGTTGGTATCCGATAC+TGG | - | chr3.1:4591978-4591997 | None:intergenic | 45.0% | |
| TAAGACACAGACACAGAGAC+CGG | - | chr3.1:4592048-4592067 | None:intergenic | 45.0% | |
| TCAAAGCTCCAACAGAAACC+TGG | + | chr3.1:4592351-4592370 | MS.gene84381:CDS | 45.0% | |
| TCATAGCTCCAGGTTTCTGT+TGG | - | chr3.1:4592362-4592381 | None:intergenic | 45.0% | |
| TCCTAGATATGATCGGGGAA+GGG | + | chr3.1:4590520-4590539 | MS.gene84381:intron | 45.0% | |
| TCGGGATCCTAGATATGATC+GGG | + | chr3.1:4590514-4590533 | MS.gene84381:intron | 45.0% | |
| TGACAAGATACCGACATCTG+TGG | + | chr3.1:4591994-4592013 | MS.gene84381:intron | 45.0% | |
| TGCATTGTGGCGTTATAGCA+TGG | - | chr3.1:4589961-4589980 | None:intergenic | 45.0% | |
| TTTCTGCTATGGCTGCATTG+TGG | - | chr3.1:4589974-4589993 | None:intergenic | 45.0% | |
| ! | ACTGTTGTCTGGAATGCCAA+AGG | - | chr3.1:4592466-4592485 | None:intergenic | 45.0% |
| ! | ATGAATTTGGTGGAGTGTGG+TGG | + | chr3.1:4590822-4590841 | MS.gene84381:intron | 45.0% |
| ! | CCAATGAATTTGGTGGAGTG+TGG | + | chr3.1:4590819-4590838 | MS.gene84381:intron | 45.0% |
| ! | TGAATTTGGTGGAGTGTGGT+GGG | + | chr3.1:4590823-4590842 | MS.gene84381:intron | 45.0% |
| ! | TTATCAATCGCGGATTACGG+TGG | + | chr3.1:4589835-4589854 | MS.gene84381:intron | 45.0% |
| !! | ACAAGAAGTGTTGGCAGTCA+TGG | - | chr3.1:4591802-4591821 | None:intergenic | 45.0% |
| !! | GGGTCGTTTTAACAGAAACC+AGG | + | chr3.1:4590877-4590896 | MS.gene84381:intron | 45.0% |
| !! | TTATGTGGCGGATTGTTAGC+TGG | - | chr3.1:4589861-4589880 | None:intergenic | 45.0% |
| !! | TTGGCCTTGCACAACATTGT+AGG | + | chr3.1:4590304-4590323 | MS.gene84381:intron | 45.0% |
| ACCCTTCCCCGATCATATCT+AGG | - | chr3.1:4590524-4590543 | None:intergenic | 50.0% | |
| AGCTGTGACTGTATGAGGGA+AGG | + | chr3.1:4590659-4590678 | MS.gene84381:intron | 50.0% | |
| CGGGATCCTAGATATGATCG+GGG | + | chr3.1:4590515-4590534 | MS.gene84381:intron | 50.0% | |
| TACATGCTGGCGTCATCTCT+TGG | + | chr3.1:4591258-4591277 | MS.gene84381:intron | 50.0% | |
| TTGAATCGCTTCGTCAGCAC+AGG | - | chr3.1:4592397-4592416 | None:intergenic | 50.0% | |
| ! | GTGGAAGTCTTGTGTTTCCG+TGG | + | chr3.1:4591160-4591179 | MS.gene84381:intron | 50.0% |
| GCAGCAGCTGAAGCGCAATT+AGG | + | chr3.1:4588557-4588576 | MS.gene84381:CDS | 55.0% | |
| CCAGGACGTGTAACCCGACC+TGG | + | chr3.1:4590895-4590914 | MS.gene84381:intron | 65.0% | |
| CCAGGTCGGGTTACACGTCC+TGG | - | chr3.1:4590898-4590917 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 4588545 | 4592494 | 4588545 | ID=MS.gene84381 |
| chr3.1 | mRNA | 4588545 | 4592494 | 4588545 | ID=MS.gene84381.t1;Parent=MS.gene84381 |
| chr3.1 | exon | 4588545 | 4588673 | 4588545 | ID=MS.gene84381.t1.exon1;Parent=MS.gene84381.t1 |
| chr3.1 | CDS | 4588545 | 4588673 | 4588545 | ID=cds.MS.gene84381.t1;Parent=MS.gene84381.t1 |
| chr3.1 | exon | 4589146 | 4589283 | 4589146 | ID=MS.gene84381.t1.exon2;Parent=MS.gene84381.t1 |
| chr3.1 | CDS | 4589146 | 4589283 | 4589146 | ID=cds.MS.gene84381.t1;Parent=MS.gene84381.t1 |
| chr3.1 | exon | 4592303 | 4592494 | 4592303 | ID=MS.gene84381.t1.exon3;Parent=MS.gene84381.t1 |
| chr3.1 | CDS | 4592303 | 4592494 | 4592303 | ID=cds.MS.gene84381.t1;Parent=MS.gene84381.t1 |
| Gene Sequence |
| Protein sequence |
