Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009461.t1 | XP_013458821.1 | 99.1 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 1.70E-151 | 545.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009461.t1 | Q8W206 | 72.5 | 320 | 83 | 2 | 1 | 318 | 1 | 317 | 6.9e-125 | 448.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009461.t1 | I3T146 | 99.1 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 1.2e-151 | 545.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51629 | MS.gene009461 | PPI |
| MS.gene63516 | MS.gene009461 | PPI |
| MS.gene011205 | MS.gene009461 | PPI |
| MS.gene07775 | MS.gene009461 | PPI |
| MS.gene56261 | MS.gene009461 | PPI |
| MS.gene009461 | MS.gene56261 | PPI |
| MS.gene37341 | MS.gene009461 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009461.t1 | MTR_3g009270 | 99.057 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 0.0 | 653 |
| MS.gene009461.t1 | MTR_5g081980 | 26.014 | 296 | 181 | 6 | 13 | 299 | 19 | 285 | 3.33e-23 | 97.8 |
| MS.gene009461.t1 | MTR_3g070180 | 25.574 | 305 | 189 | 6 | 4 | 299 | 10 | 285 | 1.79e-22 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009461.t1 | AT5G56280 | 80.625 | 320 | 57 | 2 | 1 | 318 | 1 | 317 | 0.0 | 533 |
| MS.gene009461.t1 | AT4G26430 | 77.429 | 319 | 69 | 2 | 1 | 318 | 1 | 317 | 0.0 | 517 |
| MS.gene009461.t1 | AT5G05780 | 24.915 | 293 | 185 | 5 | 13 | 299 | 19 | 282 | 3.33e-23 | 97.8 |
| MS.gene009461.t1 | AT5G05780 | 25.000 | 296 | 184 | 6 | 13 | 299 | 19 | 285 | 6.77e-23 | 97.1 |
| MS.gene009461.t1 | AT3G11270 | 24.915 | 293 | 185 | 5 | 13 | 299 | 19 | 282 | 4.63e-22 | 94.7 |
| MS.gene009461.t1 | AT3G11270 | 25.000 | 296 | 184 | 6 | 13 | 299 | 19 | 285 | 1.09e-21 | 93.6 |
Find 72 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCACCGCCACGTGTCTT+TGG | 0.239123 | 3.2:-3562129 | MS.gene009461:CDS |
| TATCTTCTTGCTATGGAAAA+AGG | 0.264053 | 3.2:-3557755 | MS.gene009461:intron |
| TTTCAACACTTCTACATATT+GGG | 0.280250 | 3.2:-3561419 | MS.gene009461:CDS |
| GCAGTGGCTGCTAATCTTAC+TGG | 0.283173 | 3.2:-3557830 | MS.gene009461:intron |
| AGCGGTTCGTCCACCCCTTC+TGG | 0.317686 | 3.2:+3555318 | None:intergenic |
| TTCTGTGAGTGATTGATTGC+AGG | 0.321468 | 3.2:+3559882 | None:intergenic |
| TCAGAACTGCATGTCATAGA+TGG | 0.338928 | 3.2:-3559273 | MS.gene009461:intron |
| AGATTGCCTGCTATTGAATC+TGG | 0.341800 | 3.2:-3557320 | MS.gene009461:CDS |
| CTTGTGAGAATTCACTATTA+AGG | 0.390102 | 3.2:-3557364 | MS.gene009461:CDS |
| AATGCTTCATAGCAGAATAA+AGG | 0.397301 | 3.2:-3557789 | MS.gene009461:CDS |
| CTGCAGTGCAATGAATGATT+TGG | 0.398427 | 3.2:-3555374 | MS.gene009461:intron |
| CAATAGCAGGCAATCTTCTC+AGG | 0.404144 | 3.2:+3557327 | None:intergenic |
| ATTTCAAGATGATTTCTTGA+TGG | 0.415768 | 3.2:-3557294 | MS.gene009461:intron |
| CGTGTCTTTGGTTGTGTCAT+CGG | 0.426062 | 3.2:-3562117 | MS.gene009461:CDS |
| CGATCAAGCGAATGAGTAGA+AGG | 0.429828 | 3.2:+3562039 | None:intergenic |
| TTGTTGGTGGCGTTGTTGTA+AGG | 0.440096 | 3.2:+3562177 | None:intergenic |
| AGCTTTGTGAATATGCATAT+CGG | 0.440439 | 3.2:+3561364 | None:intergenic |
| AGAGTTCTTGCTTCTTCTCA+AGG | 0.446432 | 3.2:+3562010 | None:intergenic |
| ATATTGGGATGGTATTCAAC+TGG | 0.453349 | 3.2:-3561404 | MS.gene009461:CDS |
| ACCGTCACCGCCGTTGTTGG+TGG | 0.453826 | 3.2:+3562164 | None:intergenic |
| GGCAAGGTAACTGATCAATA+AGG | 0.459470 | 3.2:+3556605 | None:intergenic |
| CCGCTCAAGCTATACTATTG+AGG | 0.482131 | 3.2:-3559229 | MS.gene009461:intron |
| AATTTCCCAGATTCAATAGC+AGG | 0.482170 | 3.2:+3557314 | None:intergenic |
| TGGCTTCTTCATCGAGCAGC+GGG | 0.491602 | 3.2:-3562287 | MS.gene009461:CDS |
| AACACCGTCACCGCCGTTGT+TGG | 0.499135 | 3.2:+3562161 | None:intergenic |
| GATGGATATCAATGAAAGTC+CGG | 0.506227 | 3.2:-3559922 | MS.gene009461:CDS |
| GGGTTCAGAAGAACATAAAC+CGG | 0.509577 | 3.2:+3559903 | None:intergenic |
| GCCACCAACAACGGCGGTGA+CGG | 0.509928 | 3.2:-3562165 | MS.gene009461:CDS |
| TCTTGCTTCTTCTCAAGGAA+AGG | 0.513508 | 3.2:+3562015 | None:intergenic |
| TCTGTGAGTGATTGATTGCA+GGG | 0.515077 | 3.2:+3559883 | None:intergenic |
| ACATCACTATCTTCTTGCTA+TGG | 0.532058 | 3.2:-3557762 | MS.gene009461:CDS |
| CAACCAAAGACACGTGGCGG+TGG | 0.536536 | 3.2:+3562126 | None:intergenic |
| TGTTGTAAGGAGCGAGAGTA+GGG | 0.538870 | 3.2:+3562190 | None:intergenic |
| TTGTTGTAAGGAGCGAGAGT+AGG | 0.539714 | 3.2:+3562189 | None:intergenic |
| CCTCTCAGTATATTTGAAAG+TGG | 0.540111 | 3.2:-3559852 | MS.gene009461:intron |
| GATTGCCTGCTATTGAATCT+GGG | 0.542360 | 3.2:-3557319 | MS.gene009461:CDS |
| CCTTGAGCAGTTGGTCAGCA+TGG | 0.542646 | 3.2:+3556584 | None:intergenic |
| AACACTTCTACATATTGGGA+TGG | 0.543357 | 3.2:-3561415 | MS.gene009461:CDS |
| CCATGCTGACCAACTGCTCA+AGG | 0.543673 | 3.2:-3556584 | MS.gene009461:intron |
| TGTGTCATACCTTGAGCAGT+TGG | 0.548039 | 3.2:+3556575 | None:intergenic |
| CAGAACTGCATGTCATAGAT+GGG | 0.551703 | 3.2:-3559272 | MS.gene009461:CDS |
| ACATCTCCGATCACTACACT+AGG | 0.562845 | 3.2:-3562230 | MS.gene009461:CDS |
| TACAACAACGCCACCAACAA+CGG | 0.573839 | 3.2:-3562174 | MS.gene009461:CDS |
| TGTGTCATCGGTGTTCAGAA+AGG | 0.576042 | 3.2:-3562105 | MS.gene009461:CDS |
| AAAGCTATTGAAGATTTCAA+CGG | 0.576701 | 3.2:+3562077 | None:intergenic |
| CTTATGATAGACATACCAGA+AGG | 0.579441 | 3.2:-3555333 | MS.gene009461:CDS |
| CAGTGCAATGAATGATTTGG+TGG | 0.587976 | 3.2:-3555371 | MS.gene009461:CDS |
| CCTCAATAGTATAGCTTGAG+CGG | 0.592064 | 3.2:+3559229 | None:intergenic |
| CTTAATAGTGAATTCTCACA+AGG | 0.596590 | 3.2:+3557365 | None:intergenic |
| GCTGCTGAACCACCATCAGA+TGG | 0.598136 | 3.2:+3559055 | None:intergenic |
| CTTAACCCTAGTGTAGTGAT+CGG | 0.604725 | 3.2:+3562224 | None:intergenic |
| CATCTAAAGCCATCTGATGG+TGG | 0.612178 | 3.2:-3559064 | MS.gene009461:CDS |
| GAGATGTTAACGATCACAAG+TGG | 0.615419 | 3.2:+3562246 | None:intergenic |
| CACTTTCAAATATACTGAGA+GGG | 0.615438 | 3.2:+3559853 | None:intergenic |
| AGCAGTTGGTCAGCATGGCA+AGG | 0.615730 | 3.2:+3556589 | None:intergenic |
| TTCAACTGGAAGCGATGCAG+AGG | 0.617753 | 3.2:-3561390 | MS.gene009461:CDS |
| TGCAATCAATCACTCACAGA+AGG | 0.619862 | 3.2:-3559880 | MS.gene009461:CDS |
| TGAAGACTGTTGAAGCAGAA+CGG | 0.622175 | 3.2:-3559108 | MS.gene009461:intron |
| GATAGACATACCAGAAGGGG+TGG | 0.636724 | 3.2:-3555328 | MS.gene009461:CDS |
| GCTCATCTAAAGCCATCTGA+TGG | 0.640687 | 3.2:-3559067 | MS.gene009461:CDS |
| TTATGATAGACATACCAGAA+GGG | 0.641065 | 3.2:-3555332 | MS.gene009461:CDS |
| CATCTCCGATCACTACACTA+GGG | 0.644010 | 3.2:-3562229 | MS.gene009461:CDS |
| ATGGCTTCTTCATCGAGCAG+CGG | 0.645057 | 3.2:-3562288 | MS.gene009461:CDS |
| GAGCGGACAAAGATAAGCTG+TGG | 0.650130 | 3.2:+3559246 | None:intergenic |
| TATGATAGACATACCAGAAG+GGG | 0.651893 | 3.2:-3555331 | MS.gene009461:CDS |
| CCACTTTCAAATATACTGAG+AGG | 0.672734 | 3.2:+3559852 | None:intergenic |
| TGTTAACGATCACAAGTGGG+TGG | 0.675139 | 3.2:+3562250 | None:intergenic |
| AACAACGCCACCAACAACGG+CGG | 0.682789 | 3.2:-3562171 | MS.gene009461:CDS |
| AGATGTTAACGATCACAAGT+GGG | 0.688403 | 3.2:+3562247 | None:intergenic |
| AGGCGACATTCACATGAAAG+CGG | 0.689954 | 3.2:+3555300 | None:intergenic |
| ACACAACCAAAGACACGTGG+CGG | 0.700068 | 3.2:+3562123 | None:intergenic |
| ATGACACAACCAAAGACACG+TGG | 0.743645 | 3.2:+3562120 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 3555309 | 3562310 | 3555309 | ID=MS.gene009461 |
| chr3.2 | mRNA | 3555309 | 3562310 | 3555309 | ID=MS.gene009461.t1;Parent=MS.gene009461 |
| chr3.2 | exon | 3562010 | 3562310 | 3562010 | ID=MS.gene009461.t1.exon1;Parent=MS.gene009461.t1 |
| chr3.2 | CDS | 3562010 | 3562310 | 3562010 | ID=cds.MS.gene009461.t1;Parent=MS.gene009461.t1 |
| chr3.2 | exon | 3561364 | 3561452 | 3561364 | ID=MS.gene009461.t1.exon2;Parent=MS.gene009461.t1 |
| chr3.2 | CDS | 3561364 | 3561452 | 3561364 | ID=cds.MS.gene009461.t1;Parent=MS.gene009461.t1 |
| chr3.2 | exon | 3559853 | 3559946 | 3559853 | ID=MS.gene009461.t1.exon3;Parent=MS.gene009461.t1 |
| chr3.2 | CDS | 3559853 | 3559946 | 3559853 | ID=cds.MS.gene009461.t1;Parent=MS.gene009461.t1 |
| chr3.2 | exon | 3559230 | 3559291 | 3559230 | ID=MS.gene009461.t1.exon4;Parent=MS.gene009461.t1 |
| chr3.2 | CDS | 3559230 | 3559291 | 3559230 | ID=cds.MS.gene009461.t1;Parent=MS.gene009461.t1 |
| chr3.2 | exon | 3559047 | 3559125 | 3559047 | ID=MS.gene009461.t1.exon5;Parent=MS.gene009461.t1 |
| chr3.2 | CDS | 3559047 | 3559125 | 3559047 | ID=cds.MS.gene009461.t1;Parent=MS.gene009461.t1 |
| chr3.2 | exon | 3557756 | 3557848 | 3557756 | ID=MS.gene009461.t1.exon6;Parent=MS.gene009461.t1 |
| chr3.2 | CDS | 3557756 | 3557848 | 3557756 | ID=cds.MS.gene009461.t1;Parent=MS.gene009461.t1 |
| chr3.2 | exon | 3557295 | 3557395 | 3557295 | ID=MS.gene009461.t1.exon7;Parent=MS.gene009461.t1 |
| chr3.2 | CDS | 3557295 | 3557395 | 3557295 | ID=cds.MS.gene009461.t1;Parent=MS.gene009461.t1 |
| chr3.2 | exon | 3556585 | 3556640 | 3556585 | ID=MS.gene009461.t1.exon8;Parent=MS.gene009461.t1 |
| chr3.2 | CDS | 3556585 | 3556640 | 3556585 | ID=cds.MS.gene009461.t1;Parent=MS.gene009461.t1 |
| chr3.2 | exon | 3555309 | 3555390 | 3555309 | ID=MS.gene009461.t1.exon9;Parent=MS.gene009461.t1 |
| chr3.2 | CDS | 3555309 | 3555390 | 3555309 | ID=cds.MS.gene009461.t1;Parent=MS.gene009461.t1 |
| Gene Sequence |
| Protein sequence |