Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009807.t1 | XP_013459883.1 | 98.1 | 417 | 8 | 0 | 58 | 474 | 64 | 480 | 8.30E-235 | 822.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009807.t1 | Q94IB8 | 78.9 | 417 | 88 | 0 | 58 | 474 | 63 | 479 | 1.4e-198 | 693.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009807.t1 | A0A072UVT1 | 98.1 | 417 | 8 | 0 | 58 | 474 | 64 | 480 | 6.0e-235 | 822.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009807 | MS.gene70587 | PPI |
| MS.gene022257 | MS.gene009807 | PPI |
| MS.gene25914 | MS.gene009807 | PPI |
| MS.gene009807 | MS.gene074392 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009807.t1 | MTR_3g054030 | 98.082 | 417 | 8 | 0 | 58 | 474 | 64 | 480 | 0.0 | 843 |
| MS.gene009807.t1 | MTR_5g072020 | 98.082 | 417 | 8 | 0 | 58 | 474 | 64 | 480 | 0.0 | 842 |
| MS.gene009807.t1 | MTR_1g018970 | 81.495 | 281 | 52 | 0 | 58 | 338 | 63 | 343 | 7.31e-168 | 477 |
| MS.gene009807.t1 | MTR_2g090820 | 75.410 | 122 | 18 | 1 | 335 | 444 | 15 | 136 | 1.93e-54 | 179 |
| MS.gene009807.t1 | MTR_1g019030 | 91.753 | 97 | 8 | 0 | 378 | 474 | 27 | 123 | 6.93e-53 | 174 |
| MS.gene009807.t1 | MTR_1g019000 | 94.595 | 74 | 4 | 0 | 299 | 372 | 21 | 94 | 3.01e-42 | 145 |
| MS.gene009807.t1 | MTR_6g033290 | 25.393 | 382 | 257 | 7 | 105 | 473 | 101 | 467 | 9.96e-35 | 135 |
| MS.gene009807.t1 | MTR_3g008020 | 22.179 | 257 | 170 | 7 | 104 | 340 | 100 | 346 | 2.19e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009807.t1 | AT4G36480 | 78.897 | 417 | 88 | 0 | 58 | 474 | 63 | 479 | 0.0 | 707 |
| MS.gene009807.t1 | AT4G36480 | 78.897 | 417 | 88 | 0 | 58 | 474 | 63 | 479 | 0.0 | 707 |
| MS.gene009807.t1 | AT4G36480 | 82.418 | 273 | 48 | 0 | 58 | 330 | 63 | 335 | 1.11e-175 | 496 |
| MS.gene009807.t1 | AT3G48780 | 26.247 | 381 | 253 | 7 | 105 | 472 | 101 | 466 | 1.32e-36 | 141 |
| MS.gene009807.t1 | AT3G48780 | 26.247 | 381 | 253 | 7 | 105 | 472 | 101 | 466 | 1.32e-36 | 141 |
| MS.gene009807.t1 | AT5G23670 | 25.459 | 381 | 256 | 7 | 105 | 472 | 101 | 466 | 8.61e-36 | 139 |
| MS.gene009807.t1 | AT5G23670 | 25.459 | 381 | 256 | 7 | 105 | 472 | 101 | 466 | 8.61e-36 | 139 |
| MS.gene009807.t1 | AT3G48790 | 26.488 | 336 | 219 | 7 | 146 | 472 | 7 | 323 | 1.37e-27 | 113 |
| MS.gene009807.t1 | AT3G48790 | 25.566 | 309 | 202 | 7 | 173 | 472 | 2 | 291 | 3.46e-20 | 91.7 |
| MS.gene009807.t1 | AT5G04620 | 24.038 | 416 | 250 | 16 | 77 | 461 | 70 | 450 | 3.16e-19 | 90.5 |
| MS.gene009807.t1 | AT5G04620 | 23.891 | 293 | 188 | 8 | 77 | 344 | 70 | 352 | 2.49e-18 | 87.4 |
| MS.gene009807.t1 | AT5G04620 | 24.793 | 363 | 210 | 16 | 111 | 461 | 6 | 317 | 1.69e-12 | 68.9 |
Find 97 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAACTTTGTTAATATAT+TGG | 0.157469 | 5.3:+57006923 | None:intergenic |
| GATTCAATTCTATACTCTTA+TGG | 0.157510 | 5.3:-57008453 | MS.gene009807:CDS |
| CAATTTAATGATATCATCTA+AGG | 0.207047 | 5.3:+57007505 | None:intergenic |
| TCTATGTTTGTGATGCATTT+AGG | 0.218710 | 5.3:-57010403 | MS.gene009807:CDS |
| GCAAACTATCTTGGGCTTAT+AGG | 0.246504 | 5.3:-57008768 | MS.gene009807:CDS |
| TTCAACTTTGTTAATATATT+GGG | 0.250485 | 5.3:+57006924 | None:intergenic |
| TGCATTTAGGACCTGCCTTT+TGG | 0.256502 | 5.3:-57010390 | MS.gene009807:CDS |
| TTTGGTGTCCTTGGAAGTTC+TGG | 0.262925 | 5.3:-57007437 | MS.gene009807:CDS |
| ATCTATAACTCTTGCACTTC+CGG | 0.274595 | 5.3:+57007206 | None:intergenic |
| ATTCAATTCTATACTCTTAT+GGG | 0.280484 | 5.3:-57008452 | MS.gene009807:CDS |
| AACTTCTTTACCATTAACTA+TGG | 0.283697 | 5.3:+57008806 | None:intergenic |
| AATATAACGCCTCAAATTCT+TGG | 0.308467 | 5.3:+57007994 | None:intergenic |
| ACTTCTGCTTTAGAGAAATA+TGG | 0.315204 | 5.3:-57008636 | MS.gene009807:CDS |
| AAATAAACAATTGGTGATTC+TGG | 0.318972 | 5.3:+57006662 | None:intergenic |
| TTTGCTTCAGCAAACTATCT+TGG | 0.336177 | 5.3:-57008777 | MS.gene009807:CDS |
| GGCCCACATACCATAGTTAA+TGG | 0.336802 | 5.3:-57008816 | MS.gene009807:CDS |
| GTTGTAAAATTCAAGAATTT+AGG | 0.340530 | 5.3:-57010349 | MS.gene009807:intron |
| AGCAACTCATTTGGTGTCCT+TGG | 0.366560 | 5.3:-57007446 | MS.gene009807:CDS |
| TTATATCACATTCTTGGTTG+AGG | 0.372691 | 5.3:+57009997 | None:intergenic |
| AGAACAACATTGCTGTGTTA+TGG | 0.375479 | 5.3:-57006902 | MS.gene009807:CDS |
| TTTAATCTCAAATAAACAAT+TGG | 0.376539 | 5.3:+57006653 | None:intergenic |
| TTGCTTCAGCAAACTATCTT+GGG | 0.384774 | 5.3:-57008776 | MS.gene009807:CDS |
| TATATCACATTCTTGGTTGA+GGG | 0.389459 | 5.3:+57009998 | None:intergenic |
| CACAACAATTCTTACACGTT+CGG | 0.393295 | 5.3:+57006580 | None:intergenic |
| ATTGCAGCGCTTGCAAGATA+TGG | 0.398789 | 5.3:+57006975 | None:intergenic |
| CTGGATGAGAGCAACTCATT+TGG | 0.408220 | 5.3:-57007455 | MS.gene009807:CDS |
| ATAAGATTGTTTGTTTCTGC+AGG | 0.409979 | 5.3:-57006427 | MS.gene009807:CDS |
| AAGCAGCCCCTAGCCGCTAT+AGG | 0.422377 | 5.3:-57010028 | MS.gene009807:CDS |
| ACAGGGATGAAGGGGTCCAC+TGG | 0.423354 | 5.3:-57008129 | MS.gene009807:intron |
| AGATGATATCATTAAATTGA+AGG | 0.426232 | 5.3:-57007501 | MS.gene009807:CDS |
| GAAAGAAGATTCTGTATTTG+TGG | 0.431444 | 5.3:-57006497 | MS.gene009807:CDS |
| AGGCATCTGAATCATTGAAA+AGG | 0.432396 | 5.3:-57006381 | MS.gene009807:CDS |
| GCTATAGCCTATAGCGGCTA+GGG | 0.449688 | 5.3:+57010021 | None:intergenic |
| TAAGAGTATAGAATTGAATC+AGG | 0.451302 | 5.3:+57008456 | None:intergenic |
| TTACCATTAACTATGGTATG+TGG | 0.452309 | 5.3:+57008813 | None:intergenic |
| CAGGGATGAAGGGGTCCACT+GGG | 0.463849 | 5.3:-57008128 | MS.gene009807:CDS |
| AATTTCTTATGCAGTGCTGC+TGG | 0.466285 | 5.3:-57008837 | MS.gene009807:intron |
| GCACTATGAACCACCAGTGC+TGG | 0.466748 | 5.3:-57009619 | MS.gene009807:CDS |
| TTGACGAGTTATGTGATGAA+TGG | 0.473558 | 5.3:-57009680 | MS.gene009807:CDS |
| AGAGGTCTCACTGAACACTA+TGG | 0.480877 | 5.3:-57007413 | MS.gene009807:CDS |
| AGATCTTATAACTGCTGCTA+TGG | 0.488053 | 5.3:-57007262 | MS.gene009807:CDS |
| TTGAGATTAAAGAAGTCAAC+GGG | 0.490251 | 5.3:-57006641 | MS.gene009807:CDS |
| GGCATCTGAATCATTGAAAA+GGG | 0.490844 | 5.3:-57006380 | MS.gene009807:CDS |
| ATTGGCTACTGCAGGGTTGT+TGG | 0.493292 | 5.3:-57006714 | MS.gene009807:intron |
| ATAAGCACACCAAGAATTTG+AGG | 0.494318 | 5.3:-57008003 | MS.gene009807:CDS |
| GTCCTTGGAAGTTCTGGAAG+AGG | 0.499045 | 5.3:-57007431 | MS.gene009807:CDS |
| TTGCAGCGATTGAGTAGCTC+TGG | 0.506343 | 5.3:-57007023 | MS.gene009807:intron |
| TGCTGCTATGGGACATGCAT+TGG | 0.515548 | 5.3:-57007250 | MS.gene009807:CDS |
| TGTAATCACCTTTCCAGCAC+TGG | 0.522307 | 5.3:+57009606 | None:intergenic |
| TGACGAGTTATGTGATGAAT+GGG | 0.527653 | 5.3:-57009679 | MS.gene009807:CDS |
| AGAGAAGGAATAAGCGGTTG+TGG | 0.527869 | 5.3:+57009654 | None:intergenic |
| GCTTTAGAGAAATATGGTGT+TGG | 0.529087 | 5.3:-57008630 | MS.gene009807:CDS |
| ATCTTATTCCTACAGGCAAA+CGG | 0.529325 | 5.3:+57006443 | None:intergenic |
| TATAGCGGCTAGGGGCTGCT+TGG | 0.541427 | 5.3:+57010030 | None:intergenic |
| CACTGTCCCTCCATGGTCAG+TGG | 0.546467 | 5.3:-57010436 | None:intergenic |
| GGTATAGACAATCACCCAAA+AGG | 0.548264 | 5.3:+57010375 | None:intergenic |
| ATATCACATTCTTGGTTGAG+GGG | 0.551510 | 5.3:+57009999 | None:intergenic |
| TGTTGTTGAAGCTCTCTACC+AGG | 0.553954 | 5.3:-57007972 | MS.gene009807:intron |
| GATCTTATAACTGCTGCTAT+GGG | 0.556581 | 5.3:-57007261 | MS.gene009807:CDS |
| TAGACAATCACCCAAAAGGC+AGG | 0.558082 | 5.3:+57010379 | None:intergenic |
| ATGAACCACCAGTGCTGGAA+AGG | 0.558391 | 5.3:-57009614 | MS.gene009807:intron |
| TACCATTAACTATGGTATGT+GGG | 0.558768 | 5.3:+57008814 | None:intergenic |
| ACAAACAATCTTATTCCTAC+AGG | 0.559718 | 5.3:+57006436 | None:intergenic |
| CAATTGTTCCATAAAACCCA+CGG | 0.560580 | 5.3:+57008595 | None:intergenic |
| TGACTCGCAATCGTGAAGCC+TGG | 0.563804 | 5.3:+57006686 | None:intergenic |
| TGCATATCTTTATCAAGAGA+AGG | 0.565672 | 5.3:+57009639 | None:intergenic |
| AACATTGCTGTGTTATGGAA+AGG | 0.565817 | 5.3:-57006897 | MS.gene009807:intron |
| TGCAAGAGTTATAGATCACC+AGG | 0.568076 | 5.3:-57007199 | MS.gene009807:intron |
| GCAGGGTTGTTGGAAATACC+AGG | 0.569040 | 5.3:-57006704 | MS.gene009807:intron |
| TTGGTTCATGTGGTCCCCGT+GGG | 0.570350 | 5.3:-57008611 | MS.gene009807:CDS |
| TAAGATTGTTTGTTTCTGCA+GGG | 0.573662 | 5.3:-57006426 | MS.gene009807:CDS |
| GGCTATAGCCTATAGCGGCT+AGG | 0.576432 | 5.3:+57010020 | None:intergenic |
| TTTGAGATTAAAGAAGTCAA+CGG | 0.584081 | 5.3:-57006642 | MS.gene009807:CDS |
| GACCTCTTCCAGAACTTCCA+AGG | 0.585401 | 5.3:+57007429 | None:intergenic |
| AATTTAATGATATCATCTAA+GGG | 0.585413 | 5.3:+57007506 | None:intergenic |
| AGCAGGAATAGCACTGAACA+TGG | 0.585997 | 5.3:+57008422 | None:intergenic |
| CATGCATTGGCCACAGAAGG+AGG | 0.588651 | 5.3:-57007237 | MS.gene009807:CDS |
| TGCTATTGAACCACTGACCA+TGG | 0.589028 | 5.3:+57010426 | None:intergenic |
| AATTGTTCCATAAAACCCAC+GGG | 0.590052 | 5.3:+57008596 | None:intergenic |
| GGACATGCATTGGCCACAGA+AGG | 0.590206 | 5.3:-57007240 | MS.gene009807:CDS |
| ACAGAAGGAGGATTCTGCAC+CGG | 0.604655 | 5.3:-57007225 | MS.gene009807:CDS |
| TTGGGTGATTGTCTATACCA+TGG | 0.605283 | 5.3:-57010371 | MS.gene009807:CDS |
| GGTGCAGAATCCTCCTTCTG+TGG | 0.610091 | 5.3:+57007227 | None:intergenic |
| AATCACCTTTCCAGCACTGG+TGG | 0.610373 | 5.3:+57009609 | None:intergenic |
| GACAAGTGCCGTTTGCCTGT+AGG | 0.612786 | 5.3:-57006451 | MS.gene009807:CDS |
| GTCCACTGGGGAATACAGAA+TGG | 0.616347 | 5.3:-57008115 | MS.gene009807:CDS |
| AAATATGGTGTTGGTTCATG+TGG | 0.629485 | 5.3:-57008621 | MS.gene009807:CDS |
| CTATAGCCTATAGCGGCTAG+GGG | 0.633136 | 5.3:+57010022 | None:intergenic |
| GTTGGTTCATGTGGTCCCCG+TGG | 0.636228 | 5.3:-57008612 | MS.gene009807:CDS |
| GCAGCGCTTGCAAGATATGG+AGG | 0.640184 | 5.3:+57006978 | None:intergenic |
| TTATCAAGAGAAGGAATAAG+CGG | 0.647888 | 5.3:+57009648 | None:intergenic |
| TTCAGAGTCTGATCTTCACA+AGG | 0.660377 | 5.3:-57006401 | MS.gene009807:CDS |
| TGAGGGGCTATAGCCTATAG+CGG | 0.687855 | 5.3:+57010015 | None:intergenic |
| AGGGATGAAGGGGTCCACTG+GGG | 0.704963 | 5.3:-57008127 | MS.gene009807:CDS |
| GACCATTCTGTATTCCCCAG+TGG | 0.705962 | 5.3:+57008113 | None:intergenic |
| AGGAATAGCACTGAACATGG+TGG | 0.728012 | 5.3:+57008425 | None:intergenic |
| ATTGTTCCATAAAACCCACG+GGG | 0.815269 | 5.3:+57008597 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATTAGAATCTAA+AGG | + | chr5.3:57007521-57007540 | None:intergenic | 10.0% |
| !! | AAAAAAAATTAGAATCTAAA+GGG | + | chr5.3:57007520-57007539 | None:intergenic | 10.0% |
| !! | TCCAAATAAATAAATTAAAA+AGG | - | chr5.3:57010000-57010019 | MS.gene009807:intron | 10.0% |
| !! | TTTATTGAAGTTAAAAAATA+AGG | - | chr5.3:57007679-57007698 | MS.gene009807:intron | 10.0% |
| !!! | ATAAATTTGTATTTTTTAAC+AGG | - | chr5.3:57008637-57008656 | MS.gene009807:CDS | 10.0% |
| !!! | TAAATTTGTATTTTTTAACA+GGG | - | chr5.3:57008638-57008657 | MS.gene009807:CDS | 10.0% |
| !!! | TATTTTTAAAAATGGATAAT+TGG | + | chr5.3:57007915-57007934 | None:intergenic | 10.0% |
| !! | AATTTAATGATATCATCTAA+GGG | + | chr5.3:57009281-57009300 | None:intergenic | 15.0% |
| !! | AGAAAAAGAATTTATTGATA+TGG | + | chr5.3:57008072-57008091 | None:intergenic | 15.0% |
| !! | ATAAAAAATACTCTTAAGTT+AGG | - | chr5.3:57006817-57006836 | MS.gene009807:intron | 15.0% |
| !! | ATTTGTAAGTATATATGTAT+AGG | + | chr5.3:57006520-57006539 | None:intergenic | 15.0% |
| !! | GAAAAAGAATTTATTGATAT+GGG | + | chr5.3:57008071-57008090 | None:intergenic | 15.0% |
| !! | GTTAACTTATATCATATATA+GGG | - | chr5.3:57007645-57007664 | MS.gene009807:intron | 15.0% |
| !! | TAAAAAATACTCTTAAGTTA+GGG | - | chr5.3:57006818-57006837 | MS.gene009807:intron | 15.0% |
| !! | TAAAATGATAAAAATAGATG+AGG | + | chr5.3:57007223-57007242 | None:intergenic | 15.0% |
| !! | TGTTAACTTATATCATATAT+AGG | - | chr5.3:57007644-57007663 | MS.gene009807:intron | 15.0% |
| !! | TTAAATTGAAGGAAAAATAT+CGG | - | chr5.3:57009294-57009313 | MS.gene009807:intron | 15.0% |
| !! | TTATATTTACTTTGTATTGT+AGG | - | chr5.3:57008117-57008136 | MS.gene009807:CDS | 15.0% |
| !! | TTCAACTTTGTTAATATATT+GGG | + | chr5.3:57009863-57009882 | None:intergenic | 15.0% |
| !! | TTTAATCTCAAATAAACAAT+TGG | + | chr5.3:57010134-57010153 | None:intergenic | 15.0% |
| !!! | AAATTAAGAATTGATTTTCA+AGG | - | chr5.3:57009667-57009686 | MS.gene009807:CDS | 15.0% |
| !!! | ACAATCAGTATTTTTAAAAA+TGG | + | chr5.3:57007923-57007942 | None:intergenic | 15.0% |
| !!! | AGAATTCTGAAAATTTTAAA+AGG | + | chr5.3:57009246-57009265 | None:intergenic | 15.0% |
| !!! | GCCTTTTTAATTTATTTATT+TGG | + | chr5.3:57010004-57010023 | None:intergenic | 15.0% |
| !!! | TAAATTCATGAACTTTTTTT+AGG | - | chr5.3:57007362-57007381 | MS.gene009807:intron | 15.0% |
| !!! | TAATATTAAAGTTTGTTTTG+AGG | - | chr5.3:57008220-57008239 | MS.gene009807:intron | 15.0% |
| !!! | TATATATGTATAGGTTTTTT+AGG | + | chr5.3:57006511-57006530 | None:intergenic | 15.0% |
| !!! | TCTTAGTATTTTACTATTTT+AGG | - | chr5.3:57006849-57006868 | MS.gene009807:intron | 15.0% |
| !!! | TCTTTACTTTTTTATTACAA+TGG | - | chr5.3:57008540-57008559 | MS.gene009807:intron | 15.0% |
| !!! | TTTTAAAATTTTCAGAATTC+TGG | - | chr5.3:57009245-57009264 | MS.gene009807:intron | 15.0% |
| !! | AATTTATTCTTAATTTCTGC+AGG | - | chr5.3:57007078-57007097 | MS.gene009807:intron | 20.0% |
| !! | AGATGATATCATTAAATTGA+AGG | - | chr5.3:57009283-57009302 | MS.gene009807:intron | 20.0% |
| !! | ATTCAATTCTATACTCTTAT+GGG | - | chr5.3:57008332-57008351 | MS.gene009807:intron | 20.0% |
| !! | CAATTTAATGATATCATCTA+AGG | + | chr5.3:57009282-57009301 | None:intergenic | 20.0% |
| !! | CTTCAACTTTGTTAATATAT+TGG | + | chr5.3:57009864-57009883 | None:intergenic | 20.0% |
| !! | GAAATATCAGTTATATAAAG+TGG | + | chr5.3:57008596-57008615 | None:intergenic | 20.0% |
| !! | GACAAAAAATTGAACAAAAA+TGG | + | chr5.3:57008448-57008467 | None:intergenic | 20.0% |
| !! | GTTGTAAAATTCAAGAATTT+AGG | - | chr5.3:57006435-57006454 | MS.gene009807:CDS | 20.0% |
| !! | TAAAAAAGGAGATATAATTG+TGG | - | chr5.3:57008390-57008409 | MS.gene009807:intron | 20.0% |
| !! | TAGAAATTTGAATGCATTAA+CGG | + | chr5.3:57009459-57009478 | None:intergenic | 20.0% |
| !! | TATGATATAAGTTAACAAGT+CGG | + | chr5.3:57007641-57007660 | None:intergenic | 20.0% |
| !! | TTGAAGTTAAAAAATAAGGA+AGG | - | chr5.3:57007683-57007702 | MS.gene009807:intron | 20.0% |
| !!! | AATAAAAATATAGAAGTGCA+CGG | + | chr5.3:57008857-57008876 | None:intergenic | 20.0% |
| !!! | CAATGTTTATTTCTTACTTT+CGG | - | chr5.3:57010228-57010247 | MS.gene009807:intron | 20.0% |
| !!! | TACTTTGATTTATTATGTAG+TGG | + | chr5.3:57006577-57006596 | None:intergenic | 20.0% |
| !!! | TTTCTTTTATATCACATTCT+TGG | + | chr5.3:57006796-57006815 | None:intergenic | 20.0% |
| !!! | TTTTAAAAATGGATAATTGG+CGG | + | chr5.3:57007912-57007931 | None:intergenic | 20.0% |
| ! | AACAAATGTTATCAATCTCT+TGG | - | chr5.3:57006659-57006678 | MS.gene009807:CDS | 25.0% |
| ! | AACTTCTTTACCATTAACTA+TGG | + | chr5.3:57007981-57008000 | None:intergenic | 25.0% |
| ! | ACAAAACATAAGATTATTGC+AGG | + | chr5.3:57007303-57007322 | None:intergenic | 25.0% |
| ! | ACCACATATATAGAACTATT+TGG | - | chr5.3:57008502-57008521 | MS.gene009807:CDS | 25.0% |
| ! | ATATAACTGATATTTCAAGC+AGG | - | chr5.3:57008600-57008619 | MS.gene009807:CDS | 25.0% |
| ! | ATTCTTAATTTCAGTACACT+TGG | + | chr5.3:57009658-57009677 | None:intergenic | 25.0% |
| ! | CAAAACATAAGATTATTGCA+GGG | + | chr5.3:57007302-57007321 | None:intergenic | 25.0% |
| ! | CATATATAGAACTATTTGGA+TGG | - | chr5.3:57008506-57008525 | MS.gene009807:CDS | 25.0% |
| ! | CTTACAAATATATTACCATC+AGG | - | chr5.3:57006531-57006550 | MS.gene009807:intron | 25.0% |
| ! | GATTCAATTCTATACTCTTA+TGG | - | chr5.3:57008331-57008350 | MS.gene009807:intron | 25.0% |
| ! | GTATTGTAGTGTCTATTATT+TGG | - | chr5.3:57009951-57009970 | MS.gene009807:intron | 25.0% |
| ! | GTTATATGAACTACTATTTC+TGG | - | chr5.3:57008972-57008991 | MS.gene009807:intron | 25.0% |
| !! | AAATAAACAATTGGTGATTC+TGG | + | chr5.3:57010125-57010144 | None:intergenic | 25.0% |
| !! | AATTTTGTGGACAATATTCT+AGG | - | chr5.3:57006977-57006996 | MS.gene009807:CDS | 25.0% |
| !! | ATATATTGGGATTTTCATCA+AGG | + | chr5.3:57009850-57009869 | None:intergenic | 25.0% |
| !! | ATTCTTGAATTTTACAACCA+TGG | + | chr5.3:57006433-57006452 | None:intergenic | 25.0% |
| !! | GCAAGAATAGCAAAATTTTT+AGG | - | chr5.3:57008301-57008320 | MS.gene009807:intron | 25.0% |
| !! | TAAGAGTATAGAATTGAATC+AGG | + | chr5.3:57008331-57008350 | None:intergenic | 25.0% |
| !! | TACACTAATTTTCTTTATCG+CGG | + | chr5.3:57007555-57007574 | None:intergenic | 25.0% |
| !! | TACTTTTATATGAGATGCAT+TGG | - | chr5.3:57010052-57010071 | MS.gene009807:CDS | 25.0% |
| !! | TCCAAATAGTTCTATATATG+TGG | + | chr5.3:57008506-57008525 | None:intergenic | 25.0% |
| !! | TTTCTTGCAATTTGAAGTAT+TGG | - | chr5.3:57008943-57008962 | MS.gene009807:intron | 25.0% |
| !! | TTTGAGATTAAAGAAGTCAA+CGG | - | chr5.3:57010142-57010161 | MS.gene009807:intron | 25.0% |
| !!! | TATTTTTTAACAGGGATGAA+GGG | - | chr5.3:57008646-57008665 | MS.gene009807:CDS | 25.0% |
| AAGTTCTCATGTGATTTCAT+AGG | - | chr5.3:57007581-57007600 | MS.gene009807:intron | 30.0% | |
| AATATAACGCCTCAAATTCT+TGG | + | chr5.3:57008793-57008812 | None:intergenic | 30.0% | |
| AGTTCTATATATGTGGTGTA+TGG | + | chr5.3:57008499-57008518 | None:intergenic | 30.0% | |
| ATATTAGACTGTGATGATTG+AGG | - | chr5.3:57007709-57007728 | MS.gene009807:intron | 30.0% | |
| ATTCAAATTTCTACTGCTGT+TGG | - | chr5.3:57009466-57009485 | MS.gene009807:intron | 30.0% | |
| GAAAGAAGATTCTGTATTTG+TGG | - | chr5.3:57010287-57010306 | MS.gene009807:intron | 30.0% | |
| GGAAAATGTATGACATACAA+GGG | + | chr5.3:57007620-57007639 | None:intergenic | 30.0% | |
| GTCATCAAAAGTTACTTGTA+AGG | - | chr5.3:57008038-57008057 | MS.gene009807:CDS | 30.0% | |
| TAATATAGACAAGATCTACC+TGG | + | chr5.3:57008833-57008852 | None:intergenic | 30.0% | |
| TACCATTAACTATGGTATGT+GGG | + | chr5.3:57007973-57007992 | None:intergenic | 30.0% | |
| TACTTATGTTCTGTATTCAC+AGG | - | chr5.3:57010260-57010279 | MS.gene009807:intron | 30.0% | |
| TATATCACATTCTTGGTTGA+GGG | + | chr5.3:57006789-57006808 | None:intergenic | 30.0% | |
| TATTAGACTGTGATGATTGA+GGG | - | chr5.3:57007710-57007729 | MS.gene009807:intron | 30.0% | |
| TCATAGTTATAGCAAGGTTA+AGG | - | chr5.3:57007431-57007450 | MS.gene009807:CDS | 30.0% | |
| TCTATGTTTGTGATGCATTT+AGG | - | chr5.3:57006381-57006400 | MS.gene009807:CDS | 30.0% | |
| TGCATATCTTTATCAAGAGA+AGG | + | chr5.3:57007148-57007167 | None:intergenic | 30.0% | |
| TGTCTGATGACATTTATGTT+GGG | - | chr5.3:57008464-57008483 | MS.gene009807:CDS | 30.0% | |
| TTAAAGAACGACATTGCAAT+AGG | + | chr5.3:57009094-57009113 | None:intergenic | 30.0% | |
| TTACCATTAACTATGGTATG+TGG | + | chr5.3:57007974-57007993 | None:intergenic | 30.0% | |
| TTATATCACATTCTTGGTTG+AGG | + | chr5.3:57006790-57006809 | None:intergenic | 30.0% | |
| TTATCAAGAGAAGGAATAAG+CGG | + | chr5.3:57007139-57007158 | None:intergenic | 30.0% | |
| TTGAGATTAAAGAAGTCAAC+GGG | - | chr5.3:57010143-57010162 | MS.gene009807:intron | 30.0% | |
| TTGTCTGATGACATTTATGT+TGG | - | chr5.3:57008463-57008482 | MS.gene009807:CDS | 30.0% | |
| ! | AATCTTATCTGAGATTCATC+AGG | - | chr5.3:57007035-57007054 | MS.gene009807:intron | 30.0% |
| ! | ACACTAATTTTCTTTATCGC+GGG | + | chr5.3:57007554-57007573 | None:intergenic | 30.0% |
| ! | AGGTAATCTTTTACACGTTT+AGG | + | chr5.3:57006491-57006510 | None:intergenic | 30.0% |
| ! | ATTCCTGCTTTCTCTAAAAA+AGG | - | chr5.3:57008376-57008395 | MS.gene009807:intron | 30.0% |
| ! | GCTACTAGTTATCAATTTTG+TGG | - | chr5.3:57006964-57006983 | MS.gene009807:CDS | 30.0% |
| ! | GGTAATCTTTTACACGTTTA+GGG | + | chr5.3:57006490-57006509 | None:intergenic | 30.0% |
| ! | GTAATCTTTTACACGTTTAG+GGG | + | chr5.3:57006489-57006508 | None:intergenic | 30.0% |
| ! | GTTTTATGGAACAATTGGTA+AGG | - | chr5.3:57008195-57008214 | MS.gene009807:intron | 30.0% |
| !! | ACTTCTGCTTTAGAGAAATA+TGG | - | chr5.3:57008148-57008167 | MS.gene009807:intron | 30.0% |
| !! | GTATTTTAAGCACAATGACA+TGG | - | chr5.3:57008719-57008738 | MS.gene009807:intron | 30.0% |
| !! | TACTGATTCATAAACCAACT+TGG | - | chr5.3:57009628-57009647 | MS.gene009807:CDS | 30.0% |
| !!! | ATATCGGTTTCGTATTTTAC+TGG | - | chr5.3:57009310-57009329 | MS.gene009807:intron | 30.0% |
| !!! | ATTTTTTAACAGGGATGAAG+GGG | - | chr5.3:57008647-57008666 | MS.gene009807:CDS | 30.0% |
| !!! | GTATTTTTTAACAGGGATGA+AGG | - | chr5.3:57008645-57008664 | MS.gene009807:CDS | 30.0% |
| !!! | TAGTTCACTAGAAGTACTTT+TGG | - | chr5.3:57007742-57007761 | MS.gene009807:intron | 30.0% |
| !!! | TTTAGTTTTCACTTAGATGC+TGG | + | chr5.3:57009191-57009210 | None:intergenic | 30.0% |
| AACATTGCTGTGTTATGGAA+AGG | - | chr5.3:57009887-57009906 | MS.gene009807:intron | 35.0% | |
| AAGCACAAATTGTGAGCATA+TGG | - | chr5.3:57009049-57009068 | MS.gene009807:intron | 35.0% | |
| AATTGTTCCATAAAACCCAC+GGG | + | chr5.3:57008191-57008210 | None:intergenic | 35.0% | |
| ACATAAGATTATTGCAGGGA+AGG | + | chr5.3:57007298-57007317 | None:intergenic | 35.0% | |
| ACTTGTCAATTTCACTGCTA+TGG | - | chr5.3:57007323-57007342 | MS.gene009807:intron | 35.0% | |
| AGAACAACATTGCTGTGTTA+TGG | - | chr5.3:57009882-57009901 | MS.gene009807:intron | 35.0% | |
| AGATCTTATAACTGCTGCTA+TGG | - | chr5.3:57009522-57009541 | MS.gene009807:intron | 35.0% | |
| AGGCATCTGAATCATTGAAA+AGG | - | chr5.3:57010403-57010422 | MS.gene009807:CDS | 35.0% | |
| ATAAGCACACCAAGAATTTG+AGG | - | chr5.3:57008781-57008800 | MS.gene009807:CDS | 35.0% | |
| ATATCACATTCTTGGTTGAG+GGG | + | chr5.3:57006788-57006807 | None:intergenic | 35.0% | |
| ATCTATAACTCTTGCACTTC+CGG | + | chr5.3:57009581-57009600 | None:intergenic | 35.0% | |
| ATGTACTGAAAATCTCCGTT+TGG | - | chr5.3:57009403-57009422 | MS.gene009807:intron | 35.0% | |
| CAATTGTTCCATAAAACCCA+CGG | + | chr5.3:57008192-57008211 | None:intergenic | 35.0% | |
| CACAACAATTCTTACACGTT+CGG | + | chr5.3:57010207-57010226 | None:intergenic | 35.0% | |
| CATAAGATTATTGCAGGGAA+GGG | + | chr5.3:57007297-57007316 | None:intergenic | 35.0% | |
| CGGAAAATGTATGACATACA+AGG | + | chr5.3:57007621-57007640 | None:intergenic | 35.0% | |
| CTTCTATAGTGTGTTTCGAA+TGG | - | chr5.3:57008886-57008905 | MS.gene009807:intron | 35.0% | |
| GAAAACCTACCAATATGCTA+GGG | + | chr5.3:57007393-57007412 | None:intergenic | 35.0% | |
| GAATGCATTAACGGTAAATC+TGG | + | chr5.3:57009450-57009469 | None:intergenic | 35.0% | |
| GATCACGTAAATCAGACATT+AGG | - | chr5.3:57007808-57007827 | MS.gene009807:intron | 35.0% | |
| GATCTTATAACTGCTGCTAT+GGG | - | chr5.3:57009523-57009542 | MS.gene009807:intron | 35.0% | |
| GGCATCTGAATCATTGAAAA+GGG | - | chr5.3:57010404-57010423 | MS.gene009807:CDS | 35.0% | |
| GTTATCAATCTCTTGGATAG+TGG | - | chr5.3:57006666-57006685 | MS.gene009807:CDS | 35.0% | |
| GTTGAAAAGACAGACATTAG+CGG | + | chr5.3:57009739-57009758 | None:intergenic | 35.0% | |
| GTTGTAATTGATCAGTGAGA+TGG | + | chr5.3:57006942-57006961 | None:intergenic | 35.0% | |
| TCCATTTATGAAAGTAGCAG+CGG | + | chr5.3:57009928-57009947 | None:intergenic | 35.0% | |
| TGACGAGTTATGTGATGAAT+GGG | - | chr5.3:57007105-57007124 | MS.gene009807:intron | 35.0% | |
| TGGTAGTCATAGTTATAGCA+AGG | - | chr5.3:57007425-57007444 | MS.gene009807:CDS | 35.0% | |
| TGTACTGAAAATCTCCGTTT+GGG | - | chr5.3:57009404-57009423 | MS.gene009807:intron | 35.0% | |
| TTGACGAGTTATGTGATGAA+TGG | - | chr5.3:57007104-57007123 | MS.gene009807:intron | 35.0% | |
| TTGCTTCAGCAAACTATCTT+GGG | - | chr5.3:57008008-57008027 | MS.gene009807:CDS | 35.0% | |
| TTTGCTTCAGCAAACTATCT+TGG | - | chr5.3:57008007-57008026 | MS.gene009807:CDS | 35.0% | |
| ! | CTTTTTCTTGAACACTGCTT+TGG | - | chr5.3:57008084-57008103 | MS.gene009807:CDS | 35.0% |
| ! | GGTGATTACATTTTCTCTTG+TGG | - | chr5.3:57007191-57007210 | MS.gene009807:intron | 35.0% |
| ! | TTTCTTACTTTCGGTTTTGC+TGG | - | chr5.3:57010237-57010256 | MS.gene009807:intron | 35.0% |
| !! | AAATATGGTGTTGGTTCATG+TGG | - | chr5.3:57008163-57008182 | MS.gene009807:intron | 35.0% |
| !! | CTATTTCTGGTGAGATAGTA+TGG | - | chr5.3:57008985-57009004 | MS.gene009807:intron | 35.0% |
| !! | GCTTTAGAGAAATATGGTGT+TGG | - | chr5.3:57008154-57008173 | MS.gene009807:intron | 35.0% |
| !! | TTGAACTTTTGTTGTCCTGA+TGG | + | chr5.3:57006549-57006568 | None:intergenic | 35.0% |
| !!! | TCTCCTTTTTTAGAGAAAGC+AGG | + | chr5.3:57008382-57008401 | None:intergenic | 35.0% |
| AAAAGACAGACATTAGCGGA+GGG | + | chr5.3:57009735-57009754 | None:intergenic | 40.0% | |
| AAGATTACAGTCGAAGTGAG+TGG | + | chr5.3:57006916-57006935 | None:intergenic | 40.0% | |
| AATTTCTTATGCAGTGCTGC+TGG | - | chr5.3:57007947-57007966 | MS.gene009807:intron | 40.0% | |
| ACAAATGACACTACCATACC+TGG | + | chr5.3:57009606-57009625 | None:intergenic | 40.0% | |
| ACTATGACTACCATGTCAGA+AGG | + | chr5.3:57007418-57007437 | None:intergenic | 40.0% | |
| ATTGTTCCATAAAACCCACG+GGG | + | chr5.3:57008190-57008209 | None:intergenic | 40.0% | |
| CACAGTCAAGATGTACATCT+GGG | + | chr5.3:57008279-57008298 | None:intergenic | 40.0% | |
| CATTAACGGTAAATCTGGTG+GGG | + | chr5.3:57009445-57009464 | None:intergenic | 40.0% | |
| GAGTCTCTAACACTTCTTTC+TGG | + | chr5.3:57006612-57006631 | None:intergenic | 40.0% | |
| GAGTTATAGATCACCAGGTA+TGG | - | chr5.3:57009590-57009609 | MS.gene009807:intron | 40.0% | |
| GCAAACTATCTTGGGCTTAT+AGG | - | chr5.3:57008016-57008035 | MS.gene009807:CDS | 40.0% | |
| GCATTAACGGTAAATCTGGT+GGG | + | chr5.3:57009446-57009465 | None:intergenic | 40.0% | |
| GGAAAACCTACCAATATGCT+AGG | + | chr5.3:57007394-57007413 | None:intergenic | 40.0% | |
| GGTATAGACAATCACCCAAA+AGG | + | chr5.3:57006412-57006431 | None:intergenic | 40.0% | |
| GTACACTTGGAAATCCAAGT+TGG | + | chr5.3:57009645-57009664 | None:intergenic | 40.0% | |
| TAGGATTACAGTTTGCACTC+TGG | - | chr5.3:57007827-57007846 | MS.gene009807:intron | 40.0% | |
| TCACAGTCAAGATGTACATC+TGG | + | chr5.3:57008280-57008299 | None:intergenic | 40.0% | |
| TGATTGTGATTGTGTTCTGC+AGG | - | chr5.3:57009489-57009508 | MS.gene009807:intron | 40.0% | |
| TGCAAGAGTTATAGATCACC+AGG | - | chr5.3:57009585-57009604 | MS.gene009807:intron | 40.0% | |
| TGCATTAACGGTAAATCTGG+TGG | + | chr5.3:57009447-57009466 | None:intergenic | 40.0% | |
| TTCAGAGTCTGATCTTCACA+AGG | - | chr5.3:57010383-57010402 | MS.gene009807:CDS | 40.0% | |
| TTGCTGTGTTATGGAAAGGT+AGG | - | chr5.3:57009891-57009910 | MS.gene009807:intron | 40.0% | |
| TTGGGTGATTGTCTATACCA+TGG | - | chr5.3:57006413-57006432 | MS.gene009807:CDS | 40.0% | |
| ! | AACACTATTGCTACTTGCTC+TGG | - | chr5.3:57009114-57009133 | MS.gene009807:intron | 40.0% |
| ! | CGGAGATTTTCAGTACATAC+TGG | + | chr5.3:57009401-57009420 | None:intergenic | 40.0% |
| !! | ACCGCTGCTACTTTCATAAA+TGG | - | chr5.3:57009924-57009943 | MS.gene009807:intron | 40.0% |
| !! | ATATGGTGTTGCTGTTAGAC+TGG | - | chr5.3:57009066-57009085 | MS.gene009807:intron | 40.0% |
| !! | CAATATTTTCAAGCAGGCGT+AGG | + | chr5.3:57010184-57010203 | None:intergenic | 40.0% |
| !! | CGTGGGTTTTATGGAACAAT+TGG | - | chr5.3:57008190-57008209 | MS.gene009807:intron | 40.0% |
| !! | GATTTTCAAGGCGAAGTGAT+TGG | - | chr5.3:57009679-57009698 | MS.gene009807:CDS | 40.0% |
| !! | GTTCGGCAATATTTTCAAGC+AGG | + | chr5.3:57010190-57010209 | None:intergenic | 40.0% |
| ACAAGACTGCCATTGTAGTG+GGG | + | chr5.3:57007481-57007500 | None:intergenic | 45.0% | |
| AGAGAAGGAATAAGCGGTTG+TGG | + | chr5.3:57007133-57007152 | None:intergenic | 45.0% | |
| AGAGGTCTCACTGAACACTA+TGG | - | chr5.3:57009371-57009390 | MS.gene009807:intron | 45.0% | |
| ATGACTACCATGTCAGAAGG+TGG | + | chr5.3:57007415-57007434 | None:intergenic | 45.0% | |
| ATGAGCCCTAGCATATTGGT+AGG | - | chr5.3:57007385-57007404 | MS.gene009807:intron | 45.0% | |
| ATTACAGTCGAAGTGAGTGG+AGG | + | chr5.3:57006913-57006932 | None:intergenic | 45.0% | |
| ATTGCAGCGCTTGCAAGATA+TGG | + | chr5.3:57009812-57009831 | None:intergenic | 45.0% | |
| CACAAGACTGCCATTGTAGT+GGG | + | chr5.3:57007482-57007501 | None:intergenic | 45.0% | |
| CTGGATGAGAGCAACTCATT+TGG | - | chr5.3:57009329-57009348 | MS.gene009807:intron | 45.0% | |
| GAAAAGACAGACATTAGCGG+AGG | + | chr5.3:57009736-57009755 | None:intergenic | 45.0% | |
| GAAAATCTCCGTTTGGGTGT+GGG | - | chr5.3:57009410-57009429 | MS.gene009807:intron | 45.0% | |
| GGCCCACATACCATAGTTAA+TGG | - | chr5.3:57007968-57007987 | MS.gene009807:intron | 45.0% | |
| TAGACAATCACCCAAAAGGC+AGG | + | chr5.3:57006408-57006427 | None:intergenic | 45.0% | |
| TAGGATGAGCCCTAGCATAT+TGG | - | chr5.3:57007381-57007400 | MS.gene009807:intron | 45.0% | |
| TGAAAATCTCCGTTTGGGTG+TGG | - | chr5.3:57009409-57009428 | MS.gene009807:intron | 45.0% | |
| TGTAATCACCTTTCCAGCAC+TGG | + | chr5.3:57007181-57007200 | None:intergenic | 45.0% | |
| TGTTGTTGAAGCTCTCTACC+AGG | - | chr5.3:57008812-57008831 | MS.gene009807:CDS | 45.0% | |
| TTTAGGGGTTGAGTCTACAG+AGG | + | chr5.3:57006474-57006493 | None:intergenic | 45.0% | |
| ! | AGCAGGAATAGCACTGAACA+TGG | + | chr5.3:57008365-57008384 | None:intergenic | 45.0% |
| ! | AGGAATAGCACTGAACATGG+TGG | + | chr5.3:57008362-57008381 | None:intergenic | 45.0% |
| ! | AGGTTTTCCACCTTCTGACA+TGG | - | chr5.3:57007405-57007424 | MS.gene009807:intron | 45.0% |
| ! | GATAGTGGCTCGCTACAAAA+TGG | - | chr5.3:57006681-57006700 | MS.gene009807:CDS | 45.0% |
| !! | AGCAACTCATTTGGTGTCCT+TGG | - | chr5.3:57009338-57009357 | MS.gene009807:intron | 45.0% |
| !! | GCATTTAGGACCTGCCTTTT+GGG | - | chr5.3:57006395-57006414 | MS.gene009807:CDS | 45.0% |
| !! | TGCATTTAGGACCTGCCTTT+TGG | - | chr5.3:57006394-57006413 | MS.gene009807:CDS | 45.0% |
| !! | TTTGGTGTCCTTGGAAGTTC+TGG | - | chr5.3:57009347-57009366 | MS.gene009807:intron | 45.0% |
| ACAGAAGGAGGATTCTGCAC+CGG | - | chr5.3:57009559-57009578 | MS.gene009807:intron | 50.0% | |
| ATTGGCTACTGCAGGGTTGT+TGG | - | chr5.3:57010070-57010089 | MS.gene009807:CDS | 50.0% | |
| CAAGATGTACATCTGGGCAG+AGG | + | chr5.3:57008273-57008292 | None:intergenic | 50.0% | |
| CTATAGCCTATAGCGGCTAG+GGG | + | chr5.3:57006765-57006784 | None:intergenic | 50.0% | |
| CTGTGATGATTGAGGGAGAC+TGG | - | chr5.3:57007717-57007736 | MS.gene009807:intron | 50.0% | |
| GACCATTCTGTATTCCCCAG+TGG | + | chr5.3:57008674-57008693 | None:intergenic | 50.0% | |
| GACCTCTTCCAGAACTTCCA+AGG | + | chr5.3:57009358-57009377 | None:intergenic | 50.0% | |
| GCACAAGACTGCCATTGTAG+TGG | + | chr5.3:57007483-57007502 | None:intergenic | 50.0% | |
| GCAGGGTTGTTGGAAATACC+AGG | - | chr5.3:57010080-57010099 | MS.gene009807:intron | 50.0% | |
| GCTATAGCCTATAGCGGCTA+GGG | + | chr5.3:57006766-57006785 | None:intergenic | 50.0% | |
| GTCCACTGGGGAATACAGAA+TGG | - | chr5.3:57008669-57008688 | MS.gene009807:intron | 50.0% | |
| TGAGGGGCTATAGCCTATAG+CGG | + | chr5.3:57006772-57006791 | None:intergenic | 50.0% | |
| TGCTGCTATGGGACATGCAT+TGG | - | chr5.3:57009534-57009553 | MS.gene009807:intron | 50.0% | |
| TGTATGCACCCACACCCAAA+CGG | + | chr5.3:57009421-57009440 | None:intergenic | 50.0% | |
| TTGCAGCGATTGAGTAGCTC+TGG | - | chr5.3:57009761-57009780 | MS.gene009807:intron | 50.0% | |
| ! | AATCACCTTTCCAGCACTGG+TGG | + | chr5.3:57007178-57007197 | None:intergenic | 50.0% |
| ! | ACAATGGCAGTCTTGTGCAC+TGG | - | chr5.3:57007485-57007504 | MS.gene009807:CDS | 50.0% |
| ! | ATGAACCACCAGTGCTGGAA+AGG | - | chr5.3:57007170-57007189 | MS.gene009807:intron | 50.0% |
| ! | ATTGTAGTGGGGTCCAGGTA+GGG | + | chr5.3:57007470-57007489 | None:intergenic | 50.0% |
| !! | GAGATGCATTGGCTACTGCA+GGG | - | chr5.3:57010063-57010082 | MS.gene009807:CDS | 50.0% |
| !! | GTCCTTGGAAGTTCTGGAAG+AGG | - | chr5.3:57009353-57009372 | MS.gene009807:intron | 50.0% |
| !! | TGAGATGCATTGGCTACTGC+AGG | - | chr5.3:57010062-57010081 | MS.gene009807:CDS | 50.0% |
| CTACCTGGACCCCACTACAA+TGG | - | chr5.3:57007469-57007488 | MS.gene009807:CDS | 55.0% | |
| CTGTCAGTTCAGACCCTACC+TGG | - | chr5.3:57007454-57007473 | MS.gene009807:CDS | 55.0% | |
| GCACTATGAACCACCAGTGC+TGG | - | chr5.3:57007165-57007184 | MS.gene009807:intron | 55.0% | |
| GCAGCGCTTGCAAGATATGG+AGG | + | chr5.3:57009809-57009828 | None:intergenic | 55.0% | |
| GGAGGAGCTCAATGCTGTTC+TGG | + | chr5.3:57006895-57006914 | None:intergenic | 55.0% | |
| GGCTATAGCCTATAGCGGCT+AGG | + | chr5.3:57006767-57006786 | None:intergenic | 55.0% | |
| GGTGCAGAATCCTCCTTCTG+TGG | + | chr5.3:57009560-57009579 | None:intergenic | 55.0% | |
| TGACTCGCAATCGTGAAGCC+TGG | + | chr5.3:57010101-57010120 | None:intergenic | 55.0% | |
| TTGGTTCATGTGGTCCCCGT+GGG | - | chr5.3:57008173-57008192 | MS.gene009807:intron | 55.0% | |
| ! | CATGCATTGGCCACAGAAGG+AGG | - | chr5.3:57009547-57009566 | MS.gene009807:intron | 55.0% |
| ! | CATTGTAGTGGGGTCCAGGT+AGG | + | chr5.3:57007471-57007490 | None:intergenic | 55.0% |
| ! | GGACATGCATTGGCCACAGA+AGG | - | chr5.3:57009544-57009563 | MS.gene009807:intron | 55.0% |
| ! | TGTGGTCCCCGTGGGTTTTA+TGG | - | chr5.3:57008181-57008200 | MS.gene009807:intron | 55.0% |
| !! | GACAAGTGCCGTTTGCCTGT+AGG | - | chr5.3:57010333-57010352 | MS.gene009807:intron | 55.0% |
| AAGCAGCCCCTAGCCGCTAT+AGG | - | chr5.3:57006756-57006775 | MS.gene009807:intron | 60.0% | |
| ACAGGGATGAAGGGGTCCAC+TGG | - | chr5.3:57008655-57008674 | MS.gene009807:intron | 60.0% | |
| AGGGATGAAGGGGTCCACTG+GGG | - | chr5.3:57008657-57008676 | MS.gene009807:intron | 60.0% | |
| CAGGGATGAAGGGGTCCACT+GGG | - | chr5.3:57008656-57008675 | MS.gene009807:intron | 60.0% | |
| TATAGCGGCTAGGGGCTGCT+TGG | + | chr5.3:57006757-57006776 | None:intergenic | 60.0% | |
| ! | CTGCCATTGTAGTGGGGTCC+AGG | + | chr5.3:57007475-57007494 | None:intergenic | 60.0% |
| ! | GTTGGTTCATGTGGTCCCCG+TGG | - | chr5.3:57008172-57008191 | MS.gene009807:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 57006360 | 57010446 | 57006360 | ID=MS.gene009807 |
| chr5.3 | mRNA | 57006360 | 57010446 | 57006360 | ID=MS.gene009807.t1;Parent=MS.gene009807 |
| chr5.3 | exon | 57010350 | 57010446 | 57010350 | ID=MS.gene009807.t1.exon1;Parent=MS.gene009807.t1 |
| chr5.3 | CDS | 57010350 | 57010446 | 57010350 | ID=cds.MS.gene009807.t1;Parent=MS.gene009807.t1 |
| chr5.3 | exon | 57010006 | 57010094 | 57010006 | ID=MS.gene009807.t1.exon2;Parent=MS.gene009807.t1 |
| chr5.3 | CDS | 57010006 | 57010094 | 57010006 | ID=cds.MS.gene009807.t1;Parent=MS.gene009807.t1 |
| chr5.3 | exon | 57009615 | 57009706 | 57009615 | ID=MS.gene009807.t1.exon3;Parent=MS.gene009807.t1 |
| chr5.3 | CDS | 57009615 | 57009706 | 57009615 | ID=cds.MS.gene009807.t1;Parent=MS.gene009807.t1 |
| chr5.3 | exon | 57008752 | 57008845 | 57008752 | ID=MS.gene009807.t1.exon4;Parent=MS.gene009807.t1 |
| chr5.3 | CDS | 57008752 | 57008845 | 57008752 | ID=cds.MS.gene009807.t1;Parent=MS.gene009807.t1 |
| chr5.3 | exon | 57008595 | 57008667 | 57008595 | ID=MS.gene009807.t1.exon5;Parent=MS.gene009807.t1 |
| chr5.3 | CDS | 57008595 | 57008667 | 57008595 | ID=cds.MS.gene009807.t1;Parent=MS.gene009807.t1 |
| chr5.3 | exon | 57008393 | 57008525 | 57008393 | ID=MS.gene009807.t1.exon6;Parent=MS.gene009807.t1 |
| chr5.3 | CDS | 57008393 | 57008525 | 57008393 | ID=cds.MS.gene009807.t1;Parent=MS.gene009807.t1 |
| chr5.3 | exon | 57007973 | 57008147 | 57007973 | ID=MS.gene009807.t1.exon7;Parent=MS.gene009807.t1 |
| chr5.3 | CDS | 57007973 | 57008147 | 57007973 | ID=cds.MS.gene009807.t1;Parent=MS.gene009807.t1 |
| chr5.3 | exon | 57007406 | 57007546 | 57007406 | ID=MS.gene009807.t1.exon8;Parent=MS.gene009807.t1 |
| chr5.3 | CDS | 57007406 | 57007546 | 57007406 | ID=cds.MS.gene009807.t1;Parent=MS.gene009807.t1 |
| chr5.3 | exon | 57007200 | 57007295 | 57007200 | ID=MS.gene009807.t1.exon9;Parent=MS.gene009807.t1 |
| chr5.3 | CDS | 57007200 | 57007295 | 57007200 | ID=cds.MS.gene009807.t1;Parent=MS.gene009807.t1 |
| chr5.3 | exon | 57006898 | 57007039 | 57006898 | ID=MS.gene009807.t1.exon10;Parent=MS.gene009807.t1 |
| chr5.3 | CDS | 57006898 | 57007039 | 57006898 | ID=cds.MS.gene009807.t1;Parent=MS.gene009807.t1 |
| chr5.3 | exon | 57006595 | 57006722 | 57006595 | ID=MS.gene009807.t1.exon11;Parent=MS.gene009807.t1 |
| chr5.3 | CDS | 57006595 | 57006722 | 57006595 | ID=cds.MS.gene009807.t1;Parent=MS.gene009807.t1 |
| chr5.3 | exon | 57006360 | 57006524 | 57006360 | ID=MS.gene009807.t1.exon12;Parent=MS.gene009807.t1 |
| chr5.3 | CDS | 57006360 | 57006524 | 57006360 | ID=cds.MS.gene009807.t1;Parent=MS.gene009807.t1 |
| Gene Sequence |
| Protein sequence |
