AlfalfaGEDB | MS.gene074392

M. sativa cultivar XinJiangDaYe / MS.gene074392

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074392.t1	XP_013461055.1	96.9	490	12	1	1	487	1	490	4.20E-141	511.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074392.t1	Q9S7R4	75.9	464	105	4	30	487	20	482	3.2e-65	250.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074392.t1	A0A072UZ58	96.9	490	12	1	1	487	1	490	3.0e-141	511.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene002806	MS.gene074392	PPI
MS.gene004491	MS.gene074392	PPI
MS.gene00454	MS.gene074392	PPI
MS.gene007439	MS.gene074392	PPI
MS.gene007508	MS.gene074392	PPI
MS.gene00961	MS.gene074392	PPI
MS.gene009807	MS.gene074392	PPI
MS.gene015792	MS.gene074392	PPI
MS.gene015797	MS.gene074392	PPI
MS.gene016665	MS.gene074392	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074392.t1	MTR_3g078580	96.327	490	15	1	1	487	1	490	0.0	978
MS.gene074392.t1	MTR_3g088505	32.084	427	285	3	37	463	37	458	1.86e-78	253
MS.gene074392.t1	MTR_8g071300	29.584	409	282	3	65	470	116	521	2.12e-63	218
MS.gene074392.t1	MTR_8g071300	23.868	243	180	3	238	479	150	388	6.40e-17	84.0
MS.gene074392.t1	MTR_5g006640	29.500	400	279	1	52	451	123	519	3.29e-61	209
MS.gene074392.t1	MTR_3g114700	31.124	347	238	1	79	425	125	470	7.01e-61	208
MS.gene074392.t1	MTR_3g114700	23.786	206	153	2	274	479	146	347	3.97e-14	75.1
MS.gene074392.t1	MTR_6g079830	29.107	347	242	2	104	449	232	575	1.33e-58	204
MS.gene074392.t1	MTR_6g079830	28.531	354	247	3	108	459	96	445	1.26e-46	172
MS.gene074392.t1	MTR_6g079830	24.481	241	148	1	99	339	367	573	2.10e-19	91.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074392.t1	AT1G74900	62.716	464	137	5	30	487	20	453	0.0	600
MS.gene074392.t1	AT1G77360	28.054	442	308	5	33	470	34	469	3.83e-66	221
MS.gene074392.t1	AT1G77360	28.054	442	308	5	33	470	70	505	1.22e-65	220
MS.gene074392.t1	AT5G65820	28.743	501	275	6	47	471	98	592	1.52e-61	212
MS.gene074392.t1	AT1G62680	31.728	353	237	2	112	463	135	484	1.82e-58	202
MS.gene074392.t1	AT1G62680	25.562	356	253	2	93	447	186	530	3.66e-39	149
MS.gene074392.t1	AT1G62680	24.923	325	240	2	147	470	65	386	2.20e-32	130
MS.gene074392.t1	AT1G62680	27.857	280	199	1	202	481	86	362	6.63e-30	123
MS.gene074392.t1	AT1G62680	31.728	353	237	2	112	463	135	484	1.82e-58	202
MS.gene074392.t1	AT1G62680	25.562	356	253	2	93	447	186	530	3.66e-39	149

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Find 146 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGAGGATTTGGTGT+TGG	0.554906	3.4:-75112920	MS.gene074392:CDS
AACACCGCTTGGGCCTTAAT+GGG	0.458308	3.4:-75113855	MS.gene074392:CDS
AACCGGTGGAAAAGCTCATA+AGG	0.524360	3.4:-75113766	MS.gene074392:CDS
AAGTGGGGTCCATTGGAAAG+TGG	0.533486	3.4:+75114025	None:intergenic
AAGTGGGGTTTGATAGAGTT+TGG	0.283782	3.4:+75114042	None:intergenic
AAGTGGTGGATATTCGGGTA+CGG	0.634926	3.4:+75114121	None:intergenic
AAGTTGTTGATTGAGATGGT+TGG	0.664697	3.4:-75112892	MS.gene074392:CDS
AATATTATAAGTATCCAAAT+TGG	0.262405	3.4:+75112969	None:intergenic
AATGTTGTCGACGAGAAGTG+GGG	0.674549	3.4:+75114010	None:intergenic
AATTTGTTTAAAACTCTTAG+AGG	0.370908	3.4:-75113633	MS.gene074392:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACGTTATTATTGTGATGAAG+GGG	-	chr3.4:75113901-75113920	MS.gene074392:CDS	30.0%
ACTTATACTACTATGGTTCA+TGG	-	chr3.4:75113569-75113588	MS.gene074392:CDS	30.0%
AGATATTAAGAATGCAAAGC+AGG	-	chr3.4:75114161-75114180	MS.gene074392:CDS	30.0%
CTTATACTACTATGGTTCAT+GGG	-	chr3.4:75113570-75113589	MS.gene074392:CDS	30.0%
TACTTATAATGCTTTGATCC+AGG	-	chr3.4:75113673-75113692	MS.gene074392:CDS	30.0%
TAGGAAAAAATCAGAGGATT+TGG	-	chr3.4:75114021-75114040	MS.gene074392:CDS	30.0%
TGATTAGTGCTATGTTTGTT+AGG	-	chr3.4:75114002-75114021	MS.gene074392:CDS	30.0%
TGTGGTTACTTATACTACTA+TGG	-	chr3.4:75113562-75113581	MS.gene074392:CDS	30.0%
TTGGAGTTGTTTGAAAAGAT+GGG	-	chr3.4:75113938-75113957	MS.gene074392:CDS	30.0%
ACATTGTATGTCTGAACACT+TGG	+	chr3.4:75113875-75113894	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	75112753	75114216	75112753	ID=MS.gene074392
chr3.4	mRNA	75112753	75114216	75112753	ID=MS.gene074392.t1;Parent=MS.gene074392
chr3.4	exon	75112753	75114216	75112753	ID=MS.gene074392.t1.exon1;Parent=MS.gene074392.t1
chr3.4	CDS	75112753	75114216	75112753	ID=cds.MS.gene074392.t1;Parent=MS.gene074392.t1

Gene Sequence

>MS.gene074392

ATGTTGAACCAGTTACTGGTTAAACCAGCTCAACGAACCTTGAACACTTCCCGATTCTGTCTTCCCTTCACCACCGTACCCGAATATCCACCACTTTCCATCGACGCCACCGTCGCAAAACTCGTCCTCGAATCAGATCCAAAAACCCTCTCCCAAACTCTATCAAACCCCACTTTCCAATGGACCCCACTTCTCGTCGACAACATTCTCAAACGCCTCTGGAACCACGGACCCAAAGCCTTGCAATTCTTCAAACACCTAGACCGCCACCCAACCTACATCCACTCCACCTCCTCCTTCGAGCACGCCGTCGACATCGCCGCCCGGTTACGCGAATACAACACCGCTTGGGCCTTAATGGGCCGCATGCGGGCCCTCCGTCTCGGCCCAACTCCCAAAACCTTTGCAATCCTCGCTGAACGCTATGCAACCGGTGGAAAAGCTCATAAGGCTGTGAAAGTGTTTTTGTCAATGCATGAACATGGTTGTCATCAGGATTTGAATTCGTTCAACACAATCCTTGATATTCTTTGCAAGACGAGGCGCGTTGAAATGGCGAATAATTTGTTTAAAACTCTTAGAGGGAGGTTTAAATGTGATAGTGTTAGTTATAATATAATTGCGAATGGTTGGTGTTTGATTAAGCGAACACCGATGGCGTTGCAGGTTTTGAAGGAGATGGTGGAGAGGGGGATTAATCCGACTATGGTTACTTATAATACATTGTTGAAAGGCTATTTTAGGTGTGGGCAATTGAATGAAGCTTGGGAGTTTTTTCTGGAGATGAAGAAGAGGAAGTGTGAGATTGATGTGGTTACTTATACTACTATGGTTCATGGGTTTGGTGTTGCTGGTGAGGTTAAGAGATCGAAGAGGGTTTTCGATGCAATGGTGAAAGAGGGTTTGGCTCCTTCCGTTGCTACTTATAATGCTTTGATCCAGGTTTTGTGTAAGAAGGATAGTGTGCAGAATGCTTTGTTGGTTTTTGATGAGATGGTGGGGAAAGGGTGTGTGCCTAATTTGACTACTTATAATGTTGTTATCAGAGGTTTGTGTCATTCGGGTGAAATCGAGAGAGCTGTGGAGTTTATGAAGAGAATGGAGGAAAATGGGTGTAGGCCAAGTGTTCAGACATACAATGTTGTGATACGTTATTATTGTGATGAAGGGGAACTTGAAAAGGGTTTGGAGTTGTTTGAAAAGATGGGGAATGGGACTTGTTTGCCCAATTTGGATACTTATAATATTCTGATTAGTGCTATGTTTGTTAGGAAAAAATCAGAGGATTTGGTGTTGGCTGGGAAGTTGTTGATTGAGATGGTTGGTAGAGGTTTCTTGCCCCGTAAGTTCACTTTTAATCGGGTTTTGAATGGACTTGTTCTAACGGGGAATCGAGAATTTGCGAATGAGATATTAAGAATGCAAAGCAGGTCTGGCCGTGTTCTTCGTCATGTGAAATTGTGA

Protein sequence

>MS.gene074392.t1

MLNQLLVKPAQRTLNTSRFCLPFTTVPEYPPLSIDATVAKLVLESDPKTLSQTLSNPTFQWTPLLVDNILKRLWNHGPKALQFFKHLDRHPTYIHSTSSFEHAVDIAARLREYNTAWALMGRMRALRLGPTPKTFAILAERYATGGKAHKAVKVFLSMHEHGCHQDLNSFNTILDILCKTRRVEMANNLFKTLRGRFKCDSVSYNIIANGWCLIKRTPMALQVLKEMVERGINPTMVTYNTLLKGYFRCGQLNEAWEFFLEMKKRKCEIDVVTYTTMVHGFGVAGEVKRSKRVFDAMVKEGLAPSVATYNALIQVLCKKDSVQNALLVFDEMVGKGCVPNLTTYNVVIRGLCHSGEIERAVEFMKRMEENGCRPSVQTYNVVIRYYCDEGELEKGLELFEKMGNGTCLPNLDTYNILISAMFVRKKSEDLVLAGKLLIEMVGRGFLPRKFTFNRVLNGLVLTGNREFANEILRMQSRSGRVLRHVKL