Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009940.t1 | XP_024639822.1 | 99.3 | 566 | 4 | 0 | 1 | 566 | 1 | 566 | 0.00E+00 | 1163.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009940.t1 | G7KE15 | 99.3 | 566 | 4 | 0 | 1 | 566 | 1 | 566 | 0.0e+00 | 1163.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009940 | MS.gene08769 | PPI |
| MS.gene09087 | MS.gene009940 | PPI |
| MS.gene009940 | MS.gene023532 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009940.t1 | MTR_5g069410 | 99.293 | 566 | 4 | 0 | 1 | 566 | 1 | 566 | 0.0 | 1179 |
| MS.gene009940.t1 | MTR_8g085780 | 48.325 | 567 | 265 | 6 | 14 | 561 | 16 | 573 | 0.0 | 565 |
| MS.gene009940.t1 | MTR_8g106395 | 23.948 | 309 | 190 | 9 | 271 | 553 | 75 | 364 | 6.52e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009940.t1 | AT4G12700 | 74.427 | 567 | 134 | 5 | 1 | 564 | 1 | 559 | 0.0 | 895 |
| MS.gene009940.t1 | AT2G04280 | 74.868 | 569 | 135 | 6 | 1 | 564 | 1 | 566 | 0.0 | 895 |
| MS.gene009940.t1 | AT4G08810 | 47.965 | 565 | 254 | 5 | 16 | 561 | 9 | 552 | 0.0 | 521 |
| MS.gene009940.t1 | AT3G56750 | 23.718 | 312 | 186 | 11 | 271 | 553 | 87 | 375 | 3.66e-16 | 81.3 |
| MS.gene009940.t1 | AT2G41150 | 22.581 | 310 | 193 | 10 | 271 | 553 | 87 | 376 | 3.96e-16 | 81.3 |
Find 126 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACGTTTAGTGTTGTTAGTA+TGG | 0.260774 | 5.3:+55168718 | MS.gene009940:CDS |
| CAATAGCTTCAAGGTTAAAC+TGG | 0.270199 | 5.3:+55169389 | MS.gene009940:CDS |
| GGTTTCAGACCAGAGAATTT+AGG | 0.279478 | 5.3:+55168164 | MS.gene009940:CDS |
| TTCATCTGGTCGAGGATTAC+AGG | 0.297935 | 5.3:+55169194 | MS.gene009940:CDS |
| GCTTTAATCATGAGAAAGTT+TGG | 0.298138 | 5.3:+55169250 | MS.gene009940:CDS |
| TTTATGTGGGTGGTGGAGAT+AGG | 0.323850 | 5.3:+55168918 | MS.gene009940:CDS |
| AAAGGCCATGGCATTTGATA+TGG | 0.327645 | 5.3:+55169335 | MS.gene009940:CDS |
| TAAATTTGGGAAACCTGTTC+CGG | 0.333058 | 5.3:+55168583 | MS.gene009940:CDS |
| ACTCAGTGTGAGGGGAATTC+AGG | 0.333650 | 5.3:+55168479 | MS.gene009940:CDS |
| CCATAACCAATGTTCGGTTT+AGG | 0.341807 | 5.3:-55169000 | None:intergenic |
| AGTGTTTGTTATTGGTGTTT+TGG | 0.342766 | 5.3:+55168226 | MS.gene009940:CDS |
| ACTCTATACCAATAGTTATC+AGG | 0.346554 | 5.3:-55169283 | None:intergenic |
| GGATGAAACAAAGGATCTTC+AGG | 0.354420 | 5.3:-55168278 | None:intergenic |
| TTCACATCCATAAGTTTCAT+TGG | 0.367179 | 5.3:-55169223 | None:intergenic |
| AGAGAAGACATCGTCGAATC+TGG | 0.368044 | 5.3:+55168799 | MS.gene009940:CDS |
| GGTCACACCAATGAAACTTA+TGG | 0.375350 | 5.3:+55169216 | MS.gene009940:CDS |
| TGTTGGACAAGGATCAGTTT+TGG | 0.376150 | 5.3:+55169131 | MS.gene009940:CDS |
| TCAACGAGTATAAGGAACTT+TGG | 0.387999 | 5.3:+55169617 | MS.gene009940:CDS |
| CCTAAACCGAACATTGGTTA+TGG | 0.388632 | 5.3:+55169000 | MS.gene009940:CDS |
| CAGAATACTATGGCCATGAT+TGG | 0.392276 | 5.3:+55168188 | MS.gene009940:CDS |
| GTCAATGCGTTGCCGGTTGT+TGG | 0.394102 | 5.3:+55168827 | MS.gene009940:CDS |
| GAGGTATGTGCATCAAGATT+TGG | 0.397669 | 5.3:-55169469 | None:intergenic |
| CAACGAGTATAAGGAACTTT+GGG | 0.400281 | 5.3:+55169618 | MS.gene009940:CDS |
| GTGATATGGCGTGGAGGTAT+AGG | 0.404031 | 5.3:+55168624 | MS.gene009940:CDS |
| TGCACTTCTCTCAACCTTAC+GGG | 0.405105 | 5.3:+55169498 | MS.gene009940:CDS |
| AGGTAAATACTTGGTTTATG+TGG | 0.409434 | 5.3:+55168904 | MS.gene009940:CDS |
| GGATCAGGTCAATGCGTTGC+CGG | 0.418320 | 5.3:+55168820 | MS.gene009940:CDS |
| TAACAGTGATTAAGAATGTT+GGG | 0.418456 | 5.3:+55168116 | None:intergenic |
| GAATGATAGTACCTGTGATA+TGG | 0.418806 | 5.3:+55168610 | MS.gene009940:CDS |
| GCTACTAATGAGTCTGTGTT+TGG | 0.419365 | 5.3:+55168392 | MS.gene009940:CDS |
| TCAGGGTTCTTACAATCAAT+AGG | 0.421487 | 5.3:-55168503 | None:intergenic |
| ATGGAAATCGAGGCGATTGA+TGG | 0.422328 | 5.3:+55169354 | MS.gene009940:CDS |
| TGGAGTTTCTTGTGTGCTCT+AGG | 0.424785 | 5.3:+55168965 | MS.gene009940:CDS |
| GGCGTTCCAGTAGAATTTGA+TGG | 0.427805 | 5.3:+55169685 | MS.gene009940:CDS |
| AAATTTGGGAAACCTGTTCC+GGG | 0.431548 | 5.3:+55168584 | MS.gene009940:CDS |
| GATAACAGTGTTGTGAAAAC+TGG | 0.435692 | 5.3:+55168356 | MS.gene009940:CDS |
| ACGTTTAGTGTTGTTAGTAT+GGG | 0.436986 | 5.3:+55168719 | MS.gene009940:CDS |
| TAGTGTCTGCAATAGCTTCA+AGG | 0.440816 | 5.3:+55169380 | MS.gene009940:CDS |
| CGTTTAGTGTTGTTAGTATG+GGG | 0.454205 | 5.3:+55168720 | MS.gene009940:CDS |
| AATGTTGTAATCTTAGTTGA+AGG | 0.455380 | 5.3:-55168299 | None:intergenic |
| TTCACAAATTCTCCAACAAC+CGG | 0.456505 | 5.3:-55168839 | None:intergenic |
| GTATTCTGACCTAAATTCTC+TGG | 0.456518 | 5.3:-55168173 | None:intergenic |
| ATGTAACCATCAAATTCTAC+TGG | 0.457405 | 5.3:-55169691 | None:intergenic |
| AATTTACACTTCATCGAAGC+AGG | 0.462106 | 5.3:+55169045 | MS.gene009940:CDS |
| AGATGGGATGAATCTTCATC+TGG | 0.466104 | 5.3:+55169180 | MS.gene009940:CDS |
| GAATTTAGGTCAGAATACTA+TGG | 0.467250 | 5.3:+55168178 | MS.gene009940:CDS |
| GAACTTTCCGACTCAACTAC+AGG | 0.470123 | 5.3:-55168872 | None:intergenic |
| AGGCGAGGAACAAAGAGCTT+TGG | 0.473800 | 5.3:+55169446 | MS.gene009940:CDS |
| TCATGTTGTGAGAGGGGAAA+AGG | 0.479362 | 5.3:+55169426 | MS.gene009940:CDS |
| CTATCATTCGAACCCGGAAC+AGG | 0.480882 | 5.3:-55168596 | None:intergenic |
| TTCGTCAACCTTGTCCCGTA+AGG | 0.484068 | 5.3:-55169512 | None:intergenic |
| ATCAGACTTAAAAGTAGCAT+TGG | 0.486545 | 5.3:-55168336 | None:intergenic |
| AAGGTTGAGAGAAGTGCATC+GGG | 0.490128 | 5.3:-55169493 | None:intergenic |
| TTCTCTGGTCTGAAACCTCC+AGG | 0.490679 | 5.3:-55168158 | None:intergenic |
| ATGCACTTCTCTCAACCTTA+CGG | 0.491937 | 5.3:+55169497 | MS.gene009940:CDS |
| GCCGCAGCCTTCCCATCCTT+CGG | 0.493260 | 5.3:-55168647 | None:intergenic |
| ATTTAGTCAAGGTAAATACT+TGG | 0.498121 | 5.3:+55168895 | MS.gene009940:CDS |
| TTTGGGCAGATTGGAGTAAG+TGG | 0.499384 | 5.3:+55169149 | MS.gene009940:CDS |
| TCAAATCCATAACCAATGTT+CGG | 0.500832 | 5.3:-55169006 | None:intergenic |
| GACATCGTCGAATCTGGATC+AGG | 0.504087 | 5.3:+55168805 | MS.gene009940:CDS |
| ATGTCGAGCCTGATAACTAT+TGG | 0.506139 | 5.3:+55169275 | MS.gene009940:CDS |
| AAAACAAACATTCCCAATCA+TGG | 0.507885 | 5.3:-55168201 | None:intergenic |
| CACTTCATCGAAGCAGGATG+AGG | 0.511044 | 5.3:+55169051 | MS.gene009940:CDS |
| GGTAAATACTTGGTTTATGT+GGG | 0.513383 | 5.3:+55168905 | MS.gene009940:CDS |
| GGATCAAAGAAAGATGCATC+AGG | 0.513790 | 5.3:-55169565 | None:intergenic |
| AGAATACTATGGCCATGATT+GGG | 0.518270 | 5.3:+55168189 | MS.gene009940:CDS |
| CTGGTATGAATGCGAGGAAG+AGG | 0.518699 | 5.3:+55168753 | MS.gene009940:CDS |
| ATCTTTCTTTGATCCTCTGA+AGG | 0.524319 | 5.3:+55169573 | MS.gene009940:CDS |
| AGGAAGAAGAATCAGAAGGC+TGG | 0.529198 | 5.3:+55168773 | MS.gene009940:CDS |
| GAAGGAGGCGGCGTCTGTGT+TGG | 0.531021 | 5.3:+55169114 | MS.gene009940:CDS |
| TGGAGGTATAGGCCGAAGGA+TGG | 0.536112 | 5.3:+55168635 | MS.gene009940:CDS |
| TACTTGGTTTATGTGGGTGG+TGG | 0.539901 | 5.3:+55168911 | MS.gene009940:CDS |
| TCTCTCAACCTTACGGGACA+AGG | 0.545064 | 5.3:+55169504 | MS.gene009940:CDS |
| GATACCATCCTTGCAATCAC+TGG | 0.552369 | 5.3:-55169782 | None:intergenic |
| TTGACCAGTGATTGCAAGGA+TGG | 0.552652 | 5.3:+55169778 | MS.gene009940:CDS |
| AAAGCATGAATCACTTCTTG+TGG | 0.553481 | 5.3:+55168945 | MS.gene009940:CDS |
| GTTTAGTGTTGTTAGTATGG+GGG | 0.554390 | 5.3:+55168721 | MS.gene009940:CDS |
| CGGTGAGACTAATGAGGCTG+AGG | 0.557626 | 5.3:+55168454 | MS.gene009940:CDS |
| GGCATTTGATATGGAAATCG+AGG | 0.561183 | 5.3:+55169344 | MS.gene009940:CDS |
| GTTCATTTGTAGCAATGTAG+AGG | 0.561206 | 5.3:-55169543 | None:intergenic |
| AAATACTTGGTTTATGTGGG+TGG | 0.565916 | 5.3:+55168908 | MS.gene009940:CDS |
| GATGTTGATAACTCGGTTAG+CGG | 0.568706 | 5.3:+55168434 | MS.gene009940:CDS |
| TATGACTGATGTTGATAACT+CGG | 0.569096 | 5.3:+55168427 | MS.gene009940:CDS |
| GTATAGGCCGAAGGATGGGA+AGG | 0.570064 | 5.3:+55168640 | MS.gene009940:CDS |
| ACTCAGTTCATGTTGTGAGA+GGG | 0.571566 | 5.3:+55169419 | MS.gene009940:CDS |
| GACTCAGTTCATGTTGTGAG+AGG | 0.575510 | 5.3:+55169418 | MS.gene009940:CDS |
| AATCTGTTGTTCAAAGGCCA+TGG | 0.581613 | 5.3:+55169323 | MS.gene009940:CDS |
| GTTGAATACTTATCCTTCAG+AGG | 0.583499 | 5.3:-55169586 | None:intergenic |
| CAGCCTCCCTGTAGTTGAGT+CGG | 0.583590 | 5.3:+55168865 | MS.gene009940:CDS |
| CTCAGTTCATGTTGTGAGAG+GGG | 0.585625 | 5.3:+55169420 | MS.gene009940:CDS |
| TAAGGTTGAGAGAAGTGCAT+CGG | 0.587272 | 5.3:-55169494 | None:intergenic |
| ATACCTCCACGCCATATCAC+AGG | 0.588167 | 5.3:-55168621 | None:intergenic |
| AATAGCTTCAAGGTTAAACT+GGG | 0.590944 | 5.3:+55169390 | MS.gene009940:CDS |
| GAGACAACAAAACTCAATAA+CGG | 0.592530 | 5.3:+55169664 | MS.gene009940:CDS |
| AGACAGAATCTGTTGTTCAA+AGG | 0.593771 | 5.3:+55169317 | MS.gene009940:CDS |
| GGAGGTATAGGCCGAAGGAT+GGG | 0.595782 | 5.3:+55168636 | MS.gene009940:CDS |
| TCGGAAAGTTCATTTAGTCA+AGG | 0.597241 | 5.3:+55168884 | MS.gene009940:CDS |
| TCATCTGGTCGAGGATTACA+GGG | 0.598635 | 5.3:+55169195 | MS.gene009940:CDS |
| GCCGAAGGATGGGAAGGCTG+CGG | 0.599090 | 5.3:+55168646 | MS.gene009940:CDS |
| TGATTTGACCAGTGATTGCA+AGG | 0.600244 | 5.3:+55169774 | MS.gene009940:CDS |
| ATCATACTGGTATGAATGCG+AGG | 0.603806 | 5.3:+55168747 | MS.gene009940:CDS |
| TCATCGAAGCAGGATGAGGA+AGG | 0.609494 | 5.3:+55169055 | MS.gene009940:CDS |
| GGCGGCGTCTGTGTTGGACA+AGG | 0.610283 | 5.3:+55169120 | MS.gene009940:CDS |
| TTAGTTGAAGGATGAAACAA+AGG | 0.610506 | 5.3:-55168287 | None:intergenic |
| GATGAATCTTCATCTGGTCG+AGG | 0.613587 | 5.3:+55169186 | MS.gene009940:CDS |
| CTGAGGTGACTCAGTGTGAG+GGG | 0.614034 | 5.3:+55168471 | MS.gene009940:CDS |
| GGCGTGGAGGTATAGGCCGA+AGG | 0.618753 | 5.3:+55168631 | MS.gene009940:CDS |
| GATTTCCATATCAAATGCCA+TGG | 0.621642 | 5.3:-55169340 | None:intergenic |
| AACTTTCCGACTCAACTACA+GGG | 0.628434 | 5.3:-55168871 | None:intergenic |
| GGTTAGCGGTGAGACTAATG+AGG | 0.629932 | 5.3:+55168448 | MS.gene009940:CDS |
| AGTGATTAAGAATGTTGGGT+CGG | 0.631650 | 5.3:+55168120 | None:intergenic |
| TCAGTACCTAAACCGAACAT+TGG | 0.632278 | 5.3:+55168994 | MS.gene009940:CDS |
| TTTGGGATGAGACTAGTGAA+TGG | 0.636894 | 5.3:+55169635 | MS.gene009940:CDS |
| GCTGAGGTGACTCAGTGTGA+GGG | 0.644517 | 5.3:+55168470 | MS.gene009940:CDS |
| TTGTGAGAGGGGAAAAGGCG+AGG | 0.644621 | 5.3:+55169431 | MS.gene009940:CDS |
| GGTTGAGAGAAGTGCATCGG+GGG | 0.648446 | 5.3:-55169491 | None:intergenic |
| CAGGTACTATCATTCGAACC+CGG | 0.649356 | 5.3:-55168602 | None:intergenic |
| TATTGGTATAGAGTCTGCGA+AGG | 0.653670 | 5.3:+55169292 | MS.gene009940:CDS |
| GAAGAGGAAGAAGAATCAGA+AGG | 0.658325 | 5.3:+55168769 | MS.gene009940:CDS |
| GGCTGAGGTGACTCAGTGTG+AGG | 0.673349 | 5.3:+55168469 | MS.gene009940:CDS |
| ATAGTACCTGTGATATGGCG+TGG | 0.678671 | 5.3:+55168615 | MS.gene009940:CDS |
| CAGTGTTGTGAAAACTGGTG+AGG | 0.689827 | 5.3:+55168361 | MS.gene009940:CDS |
| TTACGGGACAAGGTTGACGA+AGG | 0.696825 | 5.3:+55169514 | MS.gene009940:CDS |
| GTACCTGTGATATGGCGTGG+AGG | 0.742102 | 5.3:+55168618 | MS.gene009940:CDS |
| AGGTTGAGAGAAGTGCATCG+GGG | 0.747201 | 5.3:-55169492 | None:intergenic |
| TTTCCGACTCAACTACAGGG+AGG | 0.771122 | 5.3:-55168868 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTCATTTTTATAAATTT+GGG | + | chr5.3:55168570-55168589 | MS.gene009940:CDS | 10.0% |
| !!! | GATGTTCATTTTTATAAATT+TGG | + | chr5.3:55168569-55168588 | MS.gene009940:CDS | 15.0% |
| ! | AATGTTGTAATCTTAGTTGA+AGG | - | chr5.3:55168302-55168321 | None:intergenic | 25.0% |
| ! | ATCATCAAATGAAAAACTTC+AGG | - | chr5.3:55168524-55168543 | None:intergenic | 25.0% |
| ! | ATTTAGTCAAGGTAAATACT+TGG | + | chr5.3:55168895-55168914 | MS.gene009940:CDS | 25.0% |
| ! | TCATCAAATGAAAAACTTCA+GGG | - | chr5.3:55168523-55168542 | None:intergenic | 25.0% |
| !!! | AAGTTTTTCATTTGATGATG+AGG | + | chr5.3:55168525-55168544 | MS.gene009940:CDS | 25.0% |
| !!! | AGTTTTTCATTTGATGATGA+GGG | + | chr5.3:55168526-55168545 | MS.gene009940:CDS | 25.0% |
| !!! | TGTTTTTCAGTGTTTGTTAT+TGG | + | chr5.3:55168218-55168237 | MS.gene009940:CDS | 25.0% |
| AAAACAAACATTCCCAATCA+TGG | - | chr5.3:55168204-55168223 | None:intergenic | 30.0% | |
| AATAGCTTCAAGGTTAAACT+GGG | + | chr5.3:55169390-55169409 | MS.gene009940:CDS | 30.0% | |
| ACTCTATACCAATAGTTATC+AGG | - | chr5.3:55169286-55169305 | None:intergenic | 30.0% | |
| AGGTAAATACTTGGTTTATG+TGG | + | chr5.3:55168904-55168923 | MS.gene009940:CDS | 30.0% | |
| ATCAGACTTAAAAGTAGCAT+TGG | - | chr5.3:55168339-55168358 | None:intergenic | 30.0% | |
| ATGTAACCATCAAATTCTAC+TGG | - | chr5.3:55169694-55169713 | None:intergenic | 30.0% | |
| CAAAAACACTTCTGTATCAA+TGG | - | chr5.3:55169725-55169744 | None:intergenic | 30.0% | |
| GAATTTAGGTCAGAATACTA+TGG | + | chr5.3:55168178-55168197 | MS.gene009940:CDS | 30.0% | |
| GAGACAACAAAACTCAATAA+CGG | + | chr5.3:55169664-55169683 | MS.gene009940:CDS | 30.0% | |
| GCTTTAATCATGAGAAAGTT+TGG | + | chr5.3:55169250-55169269 | MS.gene009940:CDS | 30.0% | |
| GGTAAATACTTGGTTTATGT+GGG | + | chr5.3:55168905-55168924 | MS.gene009940:CDS | 30.0% | |
| TCAAATCCATAACCAATGTT+CGG | - | chr5.3:55169009-55169028 | None:intergenic | 30.0% | |
| TTAGTTGAAGGATGAAACAA+AGG | - | chr5.3:55168290-55168309 | None:intergenic | 30.0% | |
| TTCACATCCATAAGTTTCAT+TGG | - | chr5.3:55169226-55169245 | None:intergenic | 30.0% | |
| ! | ACGTTTAGTGTTGTTAGTAT+GGG | + | chr5.3:55168719-55168738 | MS.gene009940:CDS | 30.0% |
| ! | CGTTTTATAAGGATTATAGG+AGG | + | chr5.3:55168669-55168688 | MS.gene009940:CDS | 30.0% |
| ! | TACGTTTAGTGTTGTTAGTA+TGG | + | chr5.3:55168718-55168737 | MS.gene009940:CDS | 30.0% |
| ! | TCATTTTCTCAACGAGTATA+AGG | + | chr5.3:55169609-55169628 | MS.gene009940:CDS | 30.0% |
| !! | CTTTGATTTTGAGCATTTGA+AGG | + | chr5.3:55169096-55169115 | MS.gene009940:CDS | 30.0% |
| !! | TATGACTGATGTTGATAACT+CGG | + | chr5.3:55168427-55168446 | MS.gene009940:CDS | 30.0% |
| !!! | AGTGTTTGTTATTGGTGTTT+TGG | + | chr5.3:55168226-55168245 | MS.gene009940:CDS | 30.0% |
| !!! | GTTATTGAGTTTTGTTGTCT+CGG | - | chr5.3:55169665-55169684 | None:intergenic | 30.0% |
| !!! | TGTTTTGGTTTTCACTATCA+TGG | + | chr5.3:55168241-55168260 | MS.gene009940:CDS | 30.0% |
| AAAGCATGAATCACTTCTTG+TGG | + | chr5.3:55168945-55168964 | MS.gene009940:CDS | 35.0% | |
| AAATACTTGGTTTATGTGGG+TGG | + | chr5.3:55168908-55168927 | MS.gene009940:CDS | 35.0% | |
| AATTTACACTTCATCGAAGC+AGG | + | chr5.3:55169045-55169064 | MS.gene009940:CDS | 35.0% | |
| AGAATACTATGGCCATGATT+GGG | + | chr5.3:55168189-55168208 | MS.gene009940:CDS | 35.0% | |
| AGACAGAATCTGTTGTTCAA+AGG | + | chr5.3:55169317-55169336 | MS.gene009940:CDS | 35.0% | |
| AGTAAGTGGCAACAAAAAGA+TGG | + | chr5.3:55169163-55169182 | MS.gene009940:CDS | 35.0% | |
| ATCTTTCTTTGATCCTCTGA+AGG | + | chr5.3:55169573-55169592 | MS.gene009940:CDS | 35.0% | |
| CAACGAGTATAAGGAACTTT+GGG | + | chr5.3:55169618-55169637 | MS.gene009940:CDS | 35.0% | |
| CAATAGCTTCAAGGTTAAAC+TGG | + | chr5.3:55169389-55169408 | MS.gene009940:CDS | 35.0% | |
| GAATGATAGTACCTGTGATA+TGG | + | chr5.3:55168610-55168629 | MS.gene009940:CDS | 35.0% | |
| GATAACAGTGTTGTGAAAAC+TGG | + | chr5.3:55168356-55168375 | MS.gene009940:CDS | 35.0% | |
| GATTTCCATATCAAATGCCA+TGG | - | chr5.3:55169343-55169362 | None:intergenic | 35.0% | |
| GTAAGTGGCAACAAAAAGAT+GGG | + | chr5.3:55169164-55169183 | MS.gene009940:CDS | 35.0% | |
| GTATTCTGACCTAAATTCTC+TGG | - | chr5.3:55168176-55168195 | None:intergenic | 35.0% | |
| GTTCATTTGTAGCAATGTAG+AGG | - | chr5.3:55169546-55169565 | None:intergenic | 35.0% | |
| GTTGAATACTTATCCTTCAG+AGG | - | chr5.3:55169589-55169608 | None:intergenic | 35.0% | |
| TAAATTTGGGAAACCTGTTC+CGG | + | chr5.3:55168583-55168602 | MS.gene009940:CDS | 35.0% | |
| TCAACGAGTATAAGGAACTT+TGG | + | chr5.3:55169617-55169636 | MS.gene009940:CDS | 35.0% | |
| TCAGGGTTCTTACAATCAAT+AGG | - | chr5.3:55168506-55168525 | None:intergenic | 35.0% | |
| TCGGAAAGTTCATTTAGTCA+AGG | + | chr5.3:55168884-55168903 | MS.gene009940:CDS | 35.0% | |
| TTCACAAATTCTCCAACAAC+CGG | - | chr5.3:55168842-55168861 | None:intergenic | 35.0% | |
| ! | ATGAGGAAGGCAAAGATTTT+AGG | + | chr5.3:55169068-55169087 | MS.gene009940:CDS | 35.0% |
| ! | CGGCGTTTTATAAGGATTAT+AGG | + | chr5.3:55168666-55168685 | MS.gene009940:CDS | 35.0% |
| ! | CGTTTAGTGTTGTTAGTATG+GGG | + | chr5.3:55168720-55168739 | MS.gene009940:CDS | 35.0% |
| ! | GAAAACTGGTGAGGATTTTA+TGG | + | chr5.3:55168370-55168389 | MS.gene009940:CDS | 35.0% |
| ! | GTTTAGTGTTGTTAGTATGG+GGG | + | chr5.3:55168721-55168740 | MS.gene009940:CDS | 35.0% |
| ! | TGATTTTGAGCATTTGAAGG+AGG | + | chr5.3:55169099-55169118 | MS.gene009940:CDS | 35.0% |
| !!! | GATACAGAAGTGTTTTTGAG+AGG | + | chr5.3:55169727-55169746 | MS.gene009940:CDS | 35.0% |
| AAAGGCCATGGCATTTGATA+TGG | + | chr5.3:55169335-55169354 | MS.gene009940:CDS | 40.0% | |
| AAATTTGGGAAACCTGTTCC+GGG | + | chr5.3:55168584-55168603 | MS.gene009940:CDS | 40.0% | |
| AACTTTCCGACTCAACTACA+GGG | - | chr5.3:55168874-55168893 | None:intergenic | 40.0% | |
| AATCTGTTGTTCAAAGGCCA+TGG | + | chr5.3:55169323-55169342 | MS.gene009940:CDS | 40.0% | |
| ACTCAGTTCATGTTGTGAGA+GGG | + | chr5.3:55169419-55169438 | MS.gene009940:CDS | 40.0% | |
| AGATGGGATGAATCTTCATC+TGG | + | chr5.3:55169180-55169199 | MS.gene009940:CDS | 40.0% | |
| AGTATGGGGGATTATCATAC+TGG | + | chr5.3:55168734-55168753 | MS.gene009940:CDS | 40.0% | |
| ATCATACTGGTATGAATGCG+AGG | + | chr5.3:55168747-55168766 | MS.gene009940:CDS | 40.0% | |
| ATGCACTTCTCTCAACCTTA+CGG | + | chr5.3:55169497-55169516 | MS.gene009940:CDS | 40.0% | |
| ATGTCGAGCCTGATAACTAT+TGG | + | chr5.3:55169275-55169294 | MS.gene009940:CDS | 40.0% | |
| CAGAATACTATGGCCATGAT+TGG | + | chr5.3:55168188-55168207 | MS.gene009940:CDS | 40.0% | |
| CCATAACCAATGTTCGGTTT+AGG | - | chr5.3:55169003-55169022 | None:intergenic | 40.0% | |
| GAAGAGGAAGAAGAATCAGA+AGG | + | chr5.3:55168769-55168788 | MS.gene009940:CDS | 40.0% | |
| GAGGTATGTGCATCAAGATT+TGG | - | chr5.3:55169472-55169491 | None:intergenic | 40.0% | |
| GCTACTAATGAGTCTGTGTT+TGG | + | chr5.3:55168392-55168411 | MS.gene009940:CDS | 40.0% | |
| GGATCAAAGAAAGATGCATC+AGG | - | chr5.3:55169568-55169587 | None:intergenic | 40.0% | |
| GGATGAAACAAAGGATCTTC+AGG | - | chr5.3:55168281-55168300 | None:intergenic | 40.0% | |
| GGCATTTGATATGGAAATCG+AGG | + | chr5.3:55169344-55169363 | MS.gene009940:CDS | 40.0% | |
| GGTCACACCAATGAAACTTA+TGG | + | chr5.3:55169216-55169235 | MS.gene009940:CDS | 40.0% | |
| GGTTTCAGACCAGAGAATTT+AGG | + | chr5.3:55168164-55168183 | MS.gene009940:CDS | 40.0% | |
| TAGTGTCTGCAATAGCTTCA+AGG | + | chr5.3:55169380-55169399 | MS.gene009940:CDS | 40.0% | |
| TATTGGTATAGAGTCTGCGA+AGG | + | chr5.3:55169292-55169311 | MS.gene009940:CDS | 40.0% | |
| TCAGTACCTAAACCGAACAT+TGG | + | chr5.3:55168994-55169013 | MS.gene009940:CDS | 40.0% | |
| TGATTTGACCAGTGATTGCA+AGG | + | chr5.3:55169774-55169793 | MS.gene009940:CDS | 40.0% | |
| ! | CCTAAACCGAACATTGGTTA+TGG | + | chr5.3:55169000-55169019 | MS.gene009940:CDS | 40.0% |
| ! | GTTGGACAAGGATCAGTTTT+GGG | + | chr5.3:55169132-55169151 | MS.gene009940:CDS | 40.0% |
| ! | TAAGGTTGAGAGAAGTGCAT+CGG | - | chr5.3:55169497-55169516 | None:intergenic | 40.0% |
| ! | TGTTGGACAAGGATCAGTTT+TGG | + | chr5.3:55169131-55169150 | MS.gene009940:CDS | 40.0% |
| ! | TTTGGGATGAGACTAGTGAA+TGG | + | chr5.3:55169635-55169654 | MS.gene009940:CDS | 40.0% |
| ! | TTTTGAGCATTTGAAGGAGG+CGG | + | chr5.3:55169102-55169121 | MS.gene009940:CDS | 40.0% |
| !! | GATGTTGATAACTCGGTTAG+CGG | + | chr5.3:55168434-55168453 | MS.gene009940:CDS | 40.0% |
| AGAGAAGACATCGTCGAATC+TGG | + | chr5.3:55168799-55168818 | MS.gene009940:CDS | 45.0% | |
| AGGAAGAAGAATCAGAAGGC+TGG | + | chr5.3:55168773-55168792 | MS.gene009940:CDS | 45.0% | |
| ATAGTACCTGTGATATGGCG+TGG | + | chr5.3:55168615-55168634 | MS.gene009940:CDS | 45.0% | |
| ATGGAAATCGAGGCGATTGA+TGG | + | chr5.3:55169354-55169373 | MS.gene009940:CDS | 45.0% | |
| CAGGTACTATCATTCGAACC+CGG | - | chr5.3:55168605-55168624 | None:intergenic | 45.0% | |
| CAGTGTTGTGAAAACTGGTG+AGG | + | chr5.3:55168361-55168380 | MS.gene009940:CDS | 45.0% | |
| CTCAGTTCATGTTGTGAGAG+GGG | + | chr5.3:55169420-55169439 | MS.gene009940:CDS | 45.0% | |
| GAACTTTCCGACTCAACTAC+AGG | - | chr5.3:55168875-55168894 | None:intergenic | 45.0% | |
| GACTCAGTTCATGTTGTGAG+AGG | + | chr5.3:55169418-55169437 | MS.gene009940:CDS | 45.0% | |
| GATACCATCCTTGCAATCAC+TGG | - | chr5.3:55169785-55169804 | None:intergenic | 45.0% | |
| GATGAATCTTCATCTGGTCG+AGG | + | chr5.3:55169186-55169205 | MS.gene009940:CDS | 45.0% | |
| GGCGTTCCAGTAGAATTTGA+TGG | + | chr5.3:55169685-55169704 | MS.gene009940:CDS | 45.0% | |
| TACTTGGTTTATGTGGGTGG+TGG | + | chr5.3:55168911-55168930 | MS.gene009940:CDS | 45.0% | |
| TCATCTGGTCGAGGATTACA+GGG | + | chr5.3:55169195-55169214 | MS.gene009940:CDS | 45.0% | |
| TCATGTTGTGAGAGGGGAAA+AGG | + | chr5.3:55169426-55169445 | MS.gene009940:CDS | 45.0% | |
| TGCACTTCTCTCAACCTTAC+GGG | + | chr5.3:55169498-55169517 | MS.gene009940:CDS | 45.0% | |
| TGGAGTTTCTTGTGTGCTCT+AGG | + | chr5.3:55168965-55168984 | MS.gene009940:CDS | 45.0% | |
| TTCATCTGGTCGAGGATTAC+AGG | + | chr5.3:55169194-55169213 | MS.gene009940:CDS | 45.0% | |
| TTGACCAGTGATTGCAAGGA+TGG | + | chr5.3:55169778-55169797 | MS.gene009940:CDS | 45.0% | |
| TTTGGGCAGATTGGAGTAAG+TGG | + | chr5.3:55169149-55169168 | MS.gene009940:CDS | 45.0% | |
| ! | AAGGTTGAGAGAAGTGCATC+GGG | - | chr5.3:55169496-55169515 | None:intergenic | 45.0% |
| ! | TCTGCATTTTCTAGACCTGG+AGG | + | chr5.3:55168143-55168162 | MS.gene009940:CDS | 45.0% |
| !! | TTTATGTGGGTGGTGGAGAT+AGG | + | chr5.3:55168918-55168937 | MS.gene009940:CDS | 45.0% |
| !!! | AGGATCAGTTTTGGGCAGAT+TGG | + | chr5.3:55169140-55169159 | MS.gene009940:CDS | 45.0% |
| ACTCAGTGTGAGGGGAATTC+AGG | + | chr5.3:55168479-55168498 | MS.gene009940:CDS | 50.0% | |
| AGGCGAGGAACAAAGAGCTT+TGG | + | chr5.3:55169446-55169465 | MS.gene009940:CDS | 50.0% | |
| ATACCTCCACGCCATATCAC+AGG | - | chr5.3:55168624-55168643 | None:intergenic | 50.0% | |
| CACTTCATCGAAGCAGGATG+AGG | + | chr5.3:55169051-55169070 | MS.gene009940:CDS | 50.0% | |
| CTATCATTCGAACCCGGAAC+AGG | - | chr5.3:55168599-55168618 | None:intergenic | 50.0% | |
| CTGGTATGAATGCGAGGAAG+AGG | + | chr5.3:55168753-55168772 | MS.gene009940:CDS | 50.0% | |
| GACATCGTCGAATCTGGATC+AGG | + | chr5.3:55168805-55168824 | MS.gene009940:CDS | 50.0% | |
| GGTTAGCGGTGAGACTAATG+AGG | + | chr5.3:55168448-55168467 | MS.gene009940:CDS | 50.0% | |
| TCATCGAAGCAGGATGAGGA+AGG | + | chr5.3:55169055-55169074 | MS.gene009940:CDS | 50.0% | |
| TCTCTCAACCTTACGGGACA+AGG | + | chr5.3:55169504-55169523 | MS.gene009940:CDS | 50.0% | |
| TTACGGGACAAGGTTGACGA+AGG | + | chr5.3:55169514-55169533 | MS.gene009940:CDS | 50.0% | |
| TTCGTCAACCTTGTCCCGTA+AGG | - | chr5.3:55169515-55169534 | None:intergenic | 50.0% | |
| TTTCCGACTCAACTACAGGG+AGG | - | chr5.3:55168871-55168890 | None:intergenic | 50.0% | |
| ! | AGGTTGAGAGAAGTGCATCG+GGG | - | chr5.3:55169495-55169514 | None:intergenic | 50.0% |
| ! | CGGTCTGCATTTTCTAGACC+TGG | + | chr5.3:55168140-55168159 | MS.gene009940:CDS | 50.0% |
| ! | GAAGGCTGCGGCGTTTTATA+AGG | + | chr5.3:55168658-55168677 | MS.gene009940:CDS | 50.0% |
| ! | GTGATATGGCGTGGAGGTAT+AGG | + | chr5.3:55168624-55168643 | MS.gene009940:CDS | 50.0% |
| ! | TTCTCTGGTCTGAAACCTCC+AGG | - | chr5.3:55168161-55168180 | None:intergenic | 50.0% |
| CAGCCTCCCTGTAGTTGAGT+CGG | + | chr5.3:55168865-55168884 | MS.gene009940:CDS | 55.0% | |
| CGGTGAGACTAATGAGGCTG+AGG | + | chr5.3:55168454-55168473 | MS.gene009940:CDS | 55.0% | |
| CTGAGGTGACTCAGTGTGAG+GGG | + | chr5.3:55168471-55168490 | MS.gene009940:CDS | 55.0% | |
| GCTGAGGTGACTCAGTGTGA+GGG | + | chr5.3:55168470-55168489 | MS.gene009940:CDS | 55.0% | |
| GGATCAGGTCAATGCGTTGC+CGG | + | chr5.3:55168820-55168839 | MS.gene009940:CDS | 55.0% | |
| GTACCTGTGATATGGCGTGG+AGG | + | chr5.3:55168618-55168637 | MS.gene009940:CDS | 55.0% | |
| GTATAGGCCGAAGGATGGGA+AGG | + | chr5.3:55168640-55168659 | MS.gene009940:CDS | 55.0% | |
| TTGTGAGAGGGGAAAAGGCG+AGG | + | chr5.3:55169431-55169450 | MS.gene009940:CDS | 55.0% | |
| ! | GGAGGTATAGGCCGAAGGAT+GGG | + | chr5.3:55168636-55168655 | MS.gene009940:CDS | 55.0% |
| ! | GGTTGAGAGAAGTGCATCGG+GGG | - | chr5.3:55169494-55169513 | None:intergenic | 55.0% |
| ! | GTCAATGCGTTGCCGGTTGT+TGG | + | chr5.3:55168827-55168846 | MS.gene009940:CDS | 55.0% |
| ! | TGGAGGTATAGGCCGAAGGA+TGG | + | chr5.3:55168635-55168654 | MS.gene009940:CDS | 55.0% |
| GGCTGAGGTGACTCAGTGTG+AGG | + | chr5.3:55168469-55168488 | MS.gene009940:CDS | 60.0% | |
| ! | TGAGAGAAGTGCATCGGGGG+AGG | - | chr5.3:55169491-55169510 | None:intergenic | 60.0% |
| GAAGGAGGCGGCGTCTGTGT+TGG | + | chr5.3:55169114-55169133 | MS.gene009940:CDS | 65.0% | |
| GCCGAAGGATGGGAAGGCTG+CGG | + | chr5.3:55168646-55168665 | MS.gene009940:CDS | 65.0% | |
| GCCGCAGCCTTCCCATCCTT+CGG | - | chr5.3:55168650-55168669 | None:intergenic | 65.0% | |
| GGCGGCGTCTGTGTTGGACA+AGG | + | chr5.3:55169120-55169139 | MS.gene009940:CDS | 65.0% | |
| ! | GGCGTGGAGGTATAGGCCGA+AGG | + | chr5.3:55168631-55168650 | MS.gene009940:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 55168131 | 55169831 | 55168131 | ID=MS.gene009940 |
| chr5.3 | mRNA | 55168131 | 55169831 | 55168131 | ID=MS.gene009940.t1;Parent=MS.gene009940 |
| chr5.3 | exon | 55168131 | 55169831 | 55168131 | ID=MS.gene009940.t1.exon1;Parent=MS.gene009940.t1 |
| chr5.3 | CDS | 55168131 | 55169831 | 55168131 | ID=cds.MS.gene009940.t1;Parent=MS.gene009940.t1 |
| Gene Sequence |
| Protein sequence |
