Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023532.t1 | PNX98566.1 | 88.4 | 561 | 50 | 3 | 20 | 565 | 16 | 576 | 4.50E-296 | 1026.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023532.t1 | A0A2K3N6C6 | 88.4 | 561 | 50 | 3 | 20 | 565 | 16 | 576 | 3.3e-296 | 1026.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44844 | MS.gene023532 | PPI |
| MS.gene88718 | MS.gene023532 | PPI |
| MS.gene009940 | MS.gene023532 | PPI |
| MS.gene43740 | MS.gene023532 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023532.t1 | MTR_8g085780 | 95.172 | 580 | 6 | 5 | 1 | 565 | 1 | 573 | 0.0 | 1126 |
| MS.gene023532.t1 | MTR_5g069410 | 46.208 | 567 | 267 | 5 | 18 | 565 | 14 | 561 | 0.0 | 541 |
| MS.gene023532.t1 | MTR_8g106395 | 22.837 | 289 | 178 | 9 | 287 | 551 | 91 | 358 | 1.21e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023532.t1 | AT4G08810 | 72.371 | 561 | 125 | 6 | 19 | 565 | 8 | 552 | 0.0 | 797 |
| MS.gene023532.t1 | AT2G04280 | 45.870 | 569 | 269 | 10 | 18 | 565 | 13 | 563 | 9.85e-178 | 514 |
| MS.gene023532.t1 | AT4G12700 | 44.214 | 579 | 280 | 10 | 6 | 565 | 2 | 556 | 2.94e-172 | 499 |
| MS.gene023532.t1 | AT3G56750 | 25.620 | 242 | 154 | 9 | 287 | 506 | 103 | 340 | 1.82e-11 | 66.6 |
| MS.gene023532.t1 | AT2G41150 | 23.967 | 242 | 159 | 8 | 287 | 506 | 103 | 341 | 4.11e-11 | 65.5 |
Find 138 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGGAGTTATGGCCTAATT+TGG | 0.171963 | 4.3:+15077774 | MS.gene023532:CDS |
| CCTTCTTCATCTTTATTACT+AGG | 0.181955 | 4.3:-15077361 | None:intergenic |
| TTTATCAAAGTAATTATAAT+AGG | 0.195025 | 4.3:-15077884 | None:intergenic |
| GCCCTTCTTGAGAAGCTTAA+AGG | 0.218876 | 4.3:+15077817 | MS.gene023532:CDS |
| CCGGTGAACGGTGCTGTTTC+CGG | 0.224068 | 4.3:+15076911 | MS.gene023532:CDS |
| CGCCTGAGCCAGAGAATTAT+TGG | 0.236292 | 4.3:+15077593 | MS.gene023532:CDS |
| TCATTTGCTTGATGATTATA+AGG | 0.272334 | 4.3:+15077927 | MS.gene023532:CDS |
| CATGCTGGTGGATTTCATTC+TGG | 0.279493 | 4.3:+15077049 | MS.gene023532:CDS |
| TTATTAGTTTGATTAGGTTT+TGG | 0.288695 | 4.3:-15076466 | None:intergenic |
| TAATGACACGATACCGAGTT+TGG | 0.304440 | 4.3:+15077165 | MS.gene023532:CDS |
| GCCAGAGAATTATTGGTATA+GGG | 0.325203 | 4.3:+15077600 | MS.gene023532:CDS |
| AACTGATGATTGTCGCTATA+AGG | 0.328283 | 4.3:+15077021 | MS.gene023532:CDS |
| TGAGTAACAACTTTCCTAAC+AGG | 0.348932 | 4.3:-15077508 | None:intergenic |
| TTGACAAAAGATTGCAAAGA+TGG | 0.358588 | 4.3:+15078096 | MS.gene023532:CDS |
| TCCTCCTGTGACGAGCTTCT+CGG | 0.367021 | 4.3:+15076794 | MS.gene023532:CDS |
| TGGGATCGGAGACTAATTTC+AGG | 0.373502 | 4.3:+15077185 | MS.gene023532:CDS |
| CCCTTCTTGAGAAGCTTAAA+GGG | 0.378859 | 4.3:+15077818 | MS.gene023532:CDS |
| TGGAGAGAAAGCTCAAAATA+AGG | 0.379163 | 4.3:+15077756 | MS.gene023532:CDS |
| AGCCAGAGAATTATTGGTAT+AGG | 0.384183 | 4.3:+15077599 | MS.gene023532:CDS |
| CCAATCCGTGGCCGTGGCAC+TGG | 0.386217 | 4.3:-15077091 | None:intergenic |
| TTTGAGGGATTGGAAGAGAT+GGG | 0.394414 | 4.3:+15077456 | MS.gene023532:CDS |
| GGAGGATGAAGGAGCGGTGG+CGG | 0.398576 | 4.3:-15076771 | None:intergenic |
| TAGGAAAGTTGTTACTCATA+AGG | 0.399578 | 4.3:+15077513 | MS.gene023532:CDS |
| GGAAAGCCTGTTGAGTTTGA+TGG | 0.399767 | 4.3:+15078003 | MS.gene023532:CDS |
| AACATTGTTACTGAGATTAG+TGG | 0.401648 | 4.3:+15077694 | MS.gene023532:CDS |
| CTTCTTCATCTTTATTACTA+GGG | 0.403674 | 4.3:-15077360 | None:intergenic |
| GCCACGGATTGGTGGTGGTA+AGG | 0.404830 | 4.3:+15077102 | MS.gene023532:CDS |
| AGTTGCTTATTAGTTTGATT+AGG | 0.405220 | 4.3:-15076472 | None:intergenic |
| AAGATAAGAGCACTGTCATT+TGG | 0.406687 | 4.3:+15077557 | MS.gene023532:CDS |
| TTATCAAAGTAATTATAATA+GGG | 0.406913 | 4.3:-15077883 | None:intergenic |
| TACTGAGATTAGTGGAAGAA+TGG | 0.408267 | 4.3:+15077702 | MS.gene023532:CDS |
| CGCTATAAGGTTATTCATGC+TGG | 0.431242 | 4.3:+15077034 | MS.gene023532:CDS |
| GGATGAAGGAGCGGTGGCGG+AGG | 0.435333 | 4.3:-15076768 | None:intergenic |
| GCGGGGTGGTGATTATTGTA+AGG | 0.437445 | 4.3:+15077231 | MS.gene023532:CDS |
| CCACGGATTGGTGGTGGTAA+GGG | 0.441656 | 4.3:+15077103 | MS.gene023532:CDS |
| GAAGTATCGGAATCCAAATT+AGG | 0.442142 | 4.3:-15077787 | None:intergenic |
| ATGTATCCATCAAACTCAAC+AGG | 0.446898 | 4.3:-15078009 | None:intergenic |
| CCGGTGATTGTGATGTTTCG+TGG | 0.458417 | 4.3:+15076930 | MS.gene023532:CDS |
| TATTGGTTCAGTTCTACTAC+TGG | 0.465250 | 4.3:-15076441 | None:intergenic |
| AGATTAGTGGAAGAATGGAT+TGG | 0.466631 | 4.3:+15077707 | MS.gene023532:CDS |
| ACCCTATACCAATAATTCTC+TGG | 0.468769 | 4.3:-15077601 | None:intergenic |
| AAGCTCAAAATAAGGAGTTA+TGG | 0.469344 | 4.3:+15077764 | MS.gene023532:CDS |
| GGGGTGGAGTCGGCGGGAGA+AGG | 0.470261 | 4.3:-15076695 | None:intergenic |
| AAGGGCATCCGGCGAAGTAT+CGG | 0.470739 | 4.3:-15077800 | None:intergenic |
| TACCAATAATTCTCTGGCTC+AGG | 0.472091 | 4.3:-15077595 | None:intergenic |
| AAGGGTTGGTTCAACCTTGG+AGG | 0.472963 | 4.3:+15077836 | MS.gene023532:CDS |
| AATGACACGATACCGAGTTT+GGG | 0.473052 | 4.3:+15077166 | MS.gene023532:CDS |
| AGCTTCTCAAGAAGGGCATC+CGG | 0.474618 | 4.3:-15077811 | None:intergenic |
| CCCTTTAAGCTTCTCAAGAA+GGG | 0.478566 | 4.3:-15077818 | None:intergenic |
| GGAATTAGCGATATTCTCTT+CGG | 0.479669 | 4.3:-15076747 | None:intergenic |
| TAAACTGAGAGCGAACTTCA+AGG | 0.482035 | 4.3:+15077903 | MS.gene023532:CDS |
| CCACCACCAATCCGTGGCCG+TGG | 0.482081 | 4.3:-15077097 | None:intergenic |
| ACCCTTTAAGCTTCTCAAGA+AGG | 0.482908 | 4.3:-15077819 | None:intergenic |
| GATTAGTGGAAGAATGGATT+GGG | 0.486657 | 4.3:+15077708 | MS.gene023532:CDS |
| CGGAGACTAATTTCAGGAAT+GGG | 0.487253 | 4.3:+15077191 | MS.gene023532:CDS |
| ATTACAGCCTCCGTGACAGC+GGG | 0.487918 | 4.3:-15076716 | None:intergenic |
| CCTAGTAATAAAGATGAAGA+AGG | 0.488499 | 4.3:+15077361 | MS.gene023532:CDS |
| AAGCTCGTCACAGGAGGAGG+AGG | 0.492759 | 4.3:-15076789 | None:intergenic |
| AGTAGTAGAACTGAACCAAT+AGG | 0.492977 | 4.3:+15076443 | MS.gene023532:CDS |
| GTGCCACGGCCACGGATTGG+TGG | 0.497501 | 4.3:+15077094 | MS.gene023532:CDS |
| GAAGGATGAGGAGAGTCTTG+TGG | 0.502462 | 4.3:-15076677 | None:intergenic |
| TCACAGGAGGAGGAGGATGA+AGG | 0.506105 | 4.3:-15076782 | None:intergenic |
| TTATCTTTCTGAAGTTGCAT+AGG | 0.506393 | 4.3:-15077541 | None:intergenic |
| GAGAAGCTCGTCACAGGAGG+AGG | 0.508733 | 4.3:-15076792 | None:intergenic |
| GAAGTATTTGTATTATTCGC+GGG | 0.508790 | 4.3:+15077213 | MS.gene023532:CDS |
| CACGGATTGGTGGTGGTAAG+GGG | 0.509278 | 4.3:+15077104 | MS.gene023532:CDS |
| GAGTCGGCGGGAGAAGGATG+AGG | 0.510791 | 4.3:-15076689 | None:intergenic |
| TCGGAGACTAATTTCAGGAA+TGG | 0.517619 | 4.3:+15077190 | MS.gene023532:CDS |
| TTCGGGTTGAGTGAAGAGAT+TGG | 0.519919 | 4.3:-15076594 | None:intergenic |
| CGGGGTGGTGATTATTGTAA+GGG | 0.526101 | 4.3:+15077232 | MS.gene023532:CDS |
| CCAGTGCCACGGCCACGGAT+TGG | 0.526126 | 4.3:+15077091 | MS.gene023532:CDS |
| TCTTGAGAAGCTTAAAGGGT+TGG | 0.526288 | 4.3:+15077822 | MS.gene023532:CDS |
| GACACCTCCGTTATCAAAAC+CGG | 0.528316 | 4.3:+15076635 | MS.gene023532:CDS |
| GTAATAAGAGAGAGAAATCA+TGG | 0.534790 | 4.3:+15076960 | MS.gene023532:CDS |
| GAAATCCAGTGCCACGGCCA+CGG | 0.538894 | 4.3:+15077086 | MS.gene023532:CDS |
| TTAAAGGGTTGGTTCAACCT+TGG | 0.539372 | 4.3:+15077833 | MS.gene023532:CDS |
| GATGCGGTTCATGTGGTTCG+TGG | 0.542624 | 4.3:+15077736 | MS.gene023532:CDS |
| GTGAAGAGATTGGTGAGAGC+TGG | 0.543355 | 4.3:-15076584 | None:intergenic |
| GGAAGTATTTGTATTATTCG+CGG | 0.544116 | 4.3:+15077212 | MS.gene023532:CDS |
| CAAAGTATATTCAGAGACCT+TGG | 0.544755 | 4.3:+15077641 | MS.gene023532:CDS |
| GAAGATTGAAGCCATGGATC+GGG | 0.546279 | 4.3:-15076560 | None:intergenic |
| TAATAAAGATGAAGAAGGGA+AGG | 0.546402 | 4.3:+15077366 | MS.gene023532:CDS |
| GCTGGTGAAGATTGAAGCCA+TGG | 0.546403 | 4.3:-15076566 | None:intergenic |
| CCACGGCCACGGATTGGTGG+TGG | 0.548013 | 4.3:+15077097 | MS.gene023532:CDS |
| CCACGAAACATCACAATCAC+CGG | 0.554041 | 4.3:-15076930 | None:intergenic |
| CCGGAAACAGCACCGTTCAC+CGG | 0.554411 | 4.3:-15076911 | None:intergenic |
| CTTACCAACCACCCGATCCA+TGG | 0.556101 | 4.3:+15076549 | MS.gene023532:CDS |
| AGAGACCTTGGCATGCGTTG+TGG | 0.558542 | 4.3:+15077653 | MS.gene023532:CDS |
| AGAGGTTGCTTCTATTGTTG+AGG | 0.559157 | 4.3:+15077423 | MS.gene023532:CDS |
| GTTGCTTCTATTGTTGAGGA+AGG | 0.559966 | 4.3:+15077427 | MS.gene023532:CDS |
| GAAGCCATGGATCGGGTGGT+TGG | 0.562457 | 4.3:-15076553 | None:intergenic |
| ATGGATTTGAGTGTCTGTCT+AGG | 0.566597 | 4.3:+15077325 | MS.gene023532:CDS |
| GGAGGAGGATGAAGGAGCGG+TGG | 0.569086 | 4.3:-15076774 | None:intergenic |
| GATTTCCACAACGCATGCCA+AGG | 0.569572 | 4.3:-15077658 | None:intergenic |
| TTCATTCTGGAGTAAATGCA+AGG | 0.575495 | 4.3:+15077062 | MS.gene023532:CDS |
| CGTTCCGAGAAGCTCGTCAC+AGG | 0.576053 | 4.3:-15076798 | None:intergenic |
| TTTGGATTCCGATACTTCGC+CGG | 0.577771 | 4.3:+15077792 | MS.gene023532:CDS |
| ATAAGAGCACTGTCATTTGG+AGG | 0.583632 | 4.3:+15077560 | MS.gene023532:CDS |
| TATAAGGTTATTCATGCTGG+TGG | 0.583826 | 4.3:+15077037 | MS.gene023532:CDS |
| TGATGATTATAAGGAACTGT+GGG | 0.584010 | 4.3:+15077936 | MS.gene023532:CDS |
| AGAAAGAGTGAGGTCTTCAC+CGG | 0.584550 | 4.3:-15076654 | None:intergenic |
| TATTGGTATAGGGTTTGTGA+AGG | 0.587545 | 4.3:+15077610 | MS.gene023532:CDS |
| CACGATACCGAGTTTGGGAT+CGG | 0.588112 | 4.3:+15077171 | MS.gene023532:CDS |
| CCCTTACCACCACCAATCCG+TGG | 0.590155 | 4.3:-15077103 | None:intergenic |
| GGAGGTGTCGATGTGGAAAG+TGG | 0.590783 | 4.3:-15076621 | None:intergenic |
| GAGTATCAAACTCCGGTGAA+CGG | 0.591958 | 4.3:+15076899 | MS.gene023532:CDS |
| TCCGAGAAGCTCGTCACAGG+AGG | 0.600268 | 4.3:-15076795 | None:intergenic |
| GCAATATACAAATTCCTCCA+AGG | 0.607602 | 4.3:-15077850 | None:intergenic |
| TTAGTCTCCGATCCCAAACT+CGG | 0.610596 | 4.3:-15077178 | None:intergenic |
| TGAAGATTGAAGCCATGGAT+CGG | 0.610938 | 4.3:-15076561 | None:intergenic |
| CTAGTAATAAAGATGAAGAA+GGG | 0.614175 | 4.3:+15077362 | MS.gene023532:CDS |
| GAAACTAGTCTTCTTAACAA+TGG | 0.615471 | 4.3:+15077982 | MS.gene023532:CDS |
| AAGTATTTGTATTATTCGCG+GGG | 0.616803 | 4.3:+15077214 | MS.gene023532:CDS |
| TACAGCCTCCGTGACAGCGG+GGG | 0.618994 | 4.3:-15076714 | None:intergenic |
| TTTCCACACGAGTCTTTCCA+CGG | 0.619276 | 4.3:-15078062 | None:intergenic |
| TATTTGTATTATTCGCGGGG+TGG | 0.628601 | 4.3:+15077217 | MS.gene023532:CDS |
| GGAGGAGGAGGATGAAGGAG+CGG | 0.629139 | 4.3:-15076777 | None:intergenic |
| CAAGGAGAAATCCAGTGCCA+CGG | 0.633555 | 4.3:+15077080 | MS.gene023532:CDS |
| GATTACAGCCTCCGTGACAG+CGG | 0.634698 | 4.3:-15076717 | None:intergenic |
| TTGATGATTATAAGGAACTG+TGG | 0.636411 | 4.3:+15077935 | MS.gene023532:CDS |
| GAGAGTTGCGGTGGATACAG+AGG | 0.638410 | 4.3:+15078032 | MS.gene023532:CDS |
| AGTCTTGTGGAGAAAGAGTG+AGG | 0.643063 | 4.3:-15076664 | None:intergenic |
| ATGCGTTGTGGAAATCAAAG+AGG | 0.654360 | 4.3:+15077665 | MS.gene023532:CDS |
| TTGGTAAGTGATGGCAATGA+CGG | 0.657577 | 4.3:-15076534 | None:intergenic |
| ATCGGGTGGTTGGTAAGTGA+TGG | 0.661949 | 4.3:-15076543 | None:intergenic |
| TGATAACGGAGGTGTCGATG+TGG | 0.681342 | 4.3:-15076628 | None:intergenic |
| TTACCGTGGAAAGACTCGTG+TGG | 0.682838 | 4.3:+15078059 | MS.gene023532:CDS |
| TGGATACATGAGAGTTGCGG+TGG | 0.686702 | 4.3:+15078023 | MS.gene023532:CDS |
| TTACAGCCTCCGTGACAGCG+GGG | 0.689498 | 4.3:-15076715 | None:intergenic |
| GTAAGGGGAAAACTTTGCCG+CGG | 0.691348 | 4.3:+15077119 | MS.gene023532:CDS |
| ATGATTATAAGGAACTGTGG+GGG | 0.695717 | 4.3:+15077938 | MS.gene023532:CDS |
| GATGATTATAAGGAACTGTG+GGG | 0.695989 | 4.3:+15077937 | MS.gene023532:CDS |
| GATTGAAGCCATGGATCGGG+TGG | 0.697651 | 4.3:-15076557 | None:intergenic |
| GTGATTGTGATGTTTCGTGG+AGG | 0.699591 | 4.3:+15076933 | MS.gene023532:CDS |
| TCATCACGATTCGTTATCCG+CGG | 0.702312 | 4.3:-15077136 | None:intergenic |
| TGATGGATACATGAGAGTTG+CGG | 0.703444 | 4.3:+15078020 | MS.gene023532:CDS |
| TGAATAGCAATAAGAACACG+AGG | 0.704492 | 4.3:-15076836 | None:intergenic |
| ATAAGAGAGAGAAATCATGG+CGG | 0.828753 | 4.3:+15076963 | MS.gene023532:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCAAAGTAATTATAATA+GGG | - | chr4.3:15077886-15077905 | None:intergenic | 10.0% |
| !! | TTTATCAAAGTAATTATAAT+AGG | - | chr4.3:15077887-15077906 | None:intergenic | 10.0% |
| !!! | TTATTAGTTTGATTAGGTTT+TGG | - | chr4.3:15076469-15076488 | None:intergenic | 20.0% |
| !!! | TTTGAATAGAACTTTTGTTA+TGG | + | chr4.3:15077306-15077325 | MS.gene023532:CDS | 20.0% |
| ! | CTAGTAATAAAGATGAAGAA+GGG | + | chr4.3:15077362-15077381 | MS.gene023532:CDS | 25.0% |
| ! | CTTCTTCATCTTTATTACTA+GGG | - | chr4.3:15077363-15077382 | None:intergenic | 25.0% |
| !! | AGTTGCTTATTAGTTTGATT+AGG | - | chr4.3:15076475-15076494 | None:intergenic | 25.0% |
| !! | TCATTTGCTTGATGATTATA+AGG | + | chr4.3:15077927-15077946 | MS.gene023532:CDS | 25.0% |
| !!! | TTTATGTGGAGTTTTTTATG+TGG | + | chr4.3:15077265-15077284 | MS.gene023532:intron | 25.0% |
| AACATTGTTACTGAGATTAG+TGG | + | chr4.3:15077694-15077713 | MS.gene023532:CDS | 30.0% | |
| AAGCTCAAAATAAGGAGTTA+TGG | + | chr4.3:15077764-15077783 | MS.gene023532:CDS | 30.0% | |
| AAGTATTTGTATTATTCGCG+GGG | + | chr4.3:15077214-15077233 | MS.gene023532:CDS | 30.0% | |
| CCTAGTAATAAAGATGAAGA+AGG | + | chr4.3:15077361-15077380 | MS.gene023532:CDS | 30.0% | |
| CCTTCTTCATCTTTATTACT+AGG | - | chr4.3:15077364-15077383 | None:intergenic | 30.0% | |
| GACTCATCTTAAGAAAAAGA+AGG | + | chr4.3:15077483-15077502 | MS.gene023532:CDS | 30.0% | |
| GTAATAAGAGAGAGAAATCA+TGG | + | chr4.3:15076960-15076979 | MS.gene023532:CDS | 30.0% | |
| TAATAAAGATGAAGAAGGGA+AGG | + | chr4.3:15077366-15077385 | MS.gene023532:CDS | 30.0% | |
| TAGGAAAGTTGTTACTCATA+AGG | + | chr4.3:15077513-15077532 | MS.gene023532:CDS | 30.0% | |
| TGATGATTATAAGGAACTGT+GGG | + | chr4.3:15077936-15077955 | MS.gene023532:CDS | 30.0% | |
| TTGACAAAAGATTGCAAAGA+TGG | + | chr4.3:15078096-15078115 | MS.gene023532:CDS | 30.0% | |
| ! | AGGGTATGAATCATTTTATG+TGG | + | chr4.3:15077251-15077270 | MS.gene023532:intron | 30.0% |
| ! | GAAGTATTTGTATTATTCGC+GGG | + | chr4.3:15077213-15077232 | MS.gene023532:CDS | 30.0% |
| ! | TGATTTTGAGCATTTGAAAG+AGG | + | chr4.3:15077405-15077424 | MS.gene023532:CDS | 30.0% |
| ! | TTGATGATTATAAGGAACTG+TGG | + | chr4.3:15077935-15077954 | MS.gene023532:CDS | 30.0% |
| !! | GAAACTAGTCTTCTTAACAA+TGG | + | chr4.3:15077982-15078001 | MS.gene023532:CDS | 30.0% |
| !! | GGAAGTATTTGTATTATTCG+CGG | + | chr4.3:15077212-15077231 | MS.gene023532:CDS | 30.0% |
| !! | TTATCTTTCTGAAGTTGCAT+AGG | - | chr4.3:15077544-15077563 | None:intergenic | 30.0% |
| !!! | TGGAGTTTTTTATGTGGTTT+AGG | + | chr4.3:15077271-15077290 | MS.gene023532:intron | 30.0% |
| AACTGATGATTGTCGCTATA+AGG | + | chr4.3:15077021-15077040 | MS.gene023532:CDS | 35.0% | |
| ACCCTATACCAATAATTCTC+TGG | - | chr4.3:15077604-15077623 | None:intergenic | 35.0% | |
| AGAAAAAGAAGGTTCCTGTT+AGG | + | chr4.3:15077494-15077513 | MS.gene023532:CDS | 35.0% | |
| AGATTAGTGGAAGAATGGAT+TGG | + | chr4.3:15077707-15077726 | MS.gene023532:CDS | 35.0% | |
| AGCCAGAGAATTATTGGTAT+AGG | + | chr4.3:15077599-15077618 | MS.gene023532:CDS | 35.0% | |
| AGTAGTAGAACTGAACCAAT+AGG | + | chr4.3:15076443-15076462 | MS.gene023532:CDS | 35.0% | |
| ATAAGAGAGAGAAATCATGG+CGG | + | chr4.3:15076963-15076982 | MS.gene023532:CDS | 35.0% | |
| ATGATTATAAGGAACTGTGG+GGG | + | chr4.3:15077938-15077957 | MS.gene023532:CDS | 35.0% | |
| ATGTATCCATCAAACTCAAC+AGG | - | chr4.3:15078012-15078031 | None:intergenic | 35.0% | |
| CAAAGTATATTCAGAGACCT+TGG | + | chr4.3:15077641-15077660 | MS.gene023532:CDS | 35.0% | |
| GATGATTATAAGGAACTGTG+GGG | + | chr4.3:15077937-15077956 | MS.gene023532:CDS | 35.0% | |
| GCAATATACAAATTCCTCCA+AGG | - | chr4.3:15077853-15077872 | None:intergenic | 35.0% | |
| GCCAGAGAATTATTGGTATA+GGG | + | chr4.3:15077600-15077619 | MS.gene023532:CDS | 35.0% | |
| GGAATTAGCGATATTCTCTT+CGG | - | chr4.3:15076750-15076769 | None:intergenic | 35.0% | |
| TAAGGAGTTATGGCCTAATT+TGG | + | chr4.3:15077774-15077793 | MS.gene023532:CDS | 35.0% | |
| TACTGAGATTAGTGGAAGAA+TGG | + | chr4.3:15077702-15077721 | MS.gene023532:CDS | 35.0% | |
| TATAAGGTTATTCATGCTGG+TGG | + | chr4.3:15077037-15077056 | MS.gene023532:CDS | 35.0% | |
| TATTGGTATAGGGTTTGTGA+AGG | + | chr4.3:15077610-15077629 | MS.gene023532:CDS | 35.0% | |
| TGAATAGCAATAAGAACACG+AGG | - | chr4.3:15076839-15076858 | None:intergenic | 35.0% | |
| TGAGTAACAACTTTCCTAAC+AGG | - | chr4.3:15077511-15077530 | None:intergenic | 35.0% | |
| TGGAGAGAAAGCTCAAAATA+AGG | + | chr4.3:15077756-15077775 | MS.gene023532:CDS | 35.0% | |
| ! | ATGAAGAAGGGAAGGATTTT+AGG | + | chr4.3:15077374-15077393 | MS.gene023532:CDS | 35.0% |
| ! | GATTAGTGGAAGAATGGATT+GGG | + | chr4.3:15077708-15077727 | MS.gene023532:CDS | 35.0% |
| !! | AAGATAAGAGCACTGTCATT+TGG | + | chr4.3:15077557-15077576 | MS.gene023532:CDS | 35.0% |
| !! | GAAGTATCGGAATCCAAATT+AGG | - | chr4.3:15077790-15077809 | None:intergenic | 35.0% |
| !! | TATTGGTTCAGTTCTACTAC+TGG | - | chr4.3:15076444-15076463 | None:intergenic | 35.0% |
| !! | TTCATTCTGGAGTAAATGCA+AGG | + | chr4.3:15077062-15077081 | MS.gene023532:CDS | 35.0% |
| !! | TTGATTAGGTTTTGGCCTAT+TGG | - | chr4.3:15076461-15076480 | None:intergenic | 35.0% |
| !!! | AATGGATTGGGATTTTGATG+CGG | + | chr4.3:15077720-15077739 | MS.gene023532:CDS | 35.0% |
| !!! | GTTTTTCGAGTATCAAACTC+CGG | + | chr4.3:15076892-15076911 | MS.gene023532:CDS | 35.0% |
| AATGACACGATACCGAGTTT+GGG | + | chr4.3:15077166-15077185 | MS.gene023532:CDS | 40.0% | |
| ACCCTTTAAGCTTCTCAAGA+AGG | - | chr4.3:15077822-15077841 | None:intergenic | 40.0% | |
| AGAGGTTGCTTCTATTGTTG+AGG | + | chr4.3:15077423-15077442 | MS.gene023532:CDS | 40.0% | |
| ATGCGTTGTGGAAATCAAAG+AGG | + | chr4.3:15077665-15077684 | MS.gene023532:CDS | 40.0% | |
| ATGGATTTGAGTGTCTGTCT+AGG | + | chr4.3:15077325-15077344 | MS.gene023532:CDS | 40.0% | |
| CCCTTCTTGAGAAGCTTAAA+GGG | + | chr4.3:15077818-15077837 | MS.gene023532:CDS | 40.0% | |
| CCCTTTAAGCTTCTCAAGAA+GGG | - | chr4.3:15077821-15077840 | None:intergenic | 40.0% | |
| CGCTATAAGGTTATTCATGC+TGG | + | chr4.3:15077034-15077053 | MS.gene023532:CDS | 40.0% | |
| CGGAGACTAATTTCAGGAAT+GGG | + | chr4.3:15077191-15077210 | MS.gene023532:CDS | 40.0% | |
| GTTGCTTCTATTGTTGAGGA+AGG | + | chr4.3:15077427-15077446 | MS.gene023532:CDS | 40.0% | |
| TAAACTGAGAGCGAACTTCA+AGG | + | chr4.3:15077903-15077922 | MS.gene023532:CDS | 40.0% | |
| TAATGACACGATACCGAGTT+TGG | + | chr4.3:15077165-15077184 | MS.gene023532:CDS | 40.0% | |
| TATTTGTATTATTCGCGGGG+TGG | + | chr4.3:15077217-15077236 | MS.gene023532:CDS | 40.0% | |
| TCGGAGACTAATTTCAGGAA+TGG | + | chr4.3:15077190-15077209 | MS.gene023532:CDS | 40.0% | |
| TCTTGAGAAGCTTAAAGGGT+TGG | + | chr4.3:15077822-15077841 | MS.gene023532:CDS | 40.0% | |
| TGAAGATTGAAGCCATGGAT+CGG | - | chr4.3:15076564-15076583 | None:intergenic | 40.0% | |
| TTGGTAAGTGATGGCAATGA+CGG | - | chr4.3:15076537-15076556 | None:intergenic | 40.0% | |
| TTTGAGGGATTGGAAGAGAT+GGG | + | chr4.3:15077456-15077475 | MS.gene023532:CDS | 40.0% | |
| ! | TACCAATAATTCTCTGGCTC+AGG | - | chr4.3:15077598-15077617 | None:intergenic | 40.0% |
| ! | TGAGGAAGGTGAGTTTTTGA+GGG | + | chr4.3:15077441-15077460 | MS.gene023532:CDS | 40.0% |
| ! | TGATGGATACATGAGAGTTG+CGG | + | chr4.3:15078020-15078039 | MS.gene023532:CDS | 40.0% |
| ! | TTGAGGAAGGTGAGTTTTTG+AGG | + | chr4.3:15077440-15077459 | MS.gene023532:CDS | 40.0% |
| !! | AAGGTGAGTTTTTGAGGGAT+TGG | + | chr4.3:15077446-15077465 | MS.gene023532:CDS | 40.0% |
| !! | ATAAGAGCACTGTCATTTGG+AGG | + | chr4.3:15077560-15077579 | MS.gene023532:CDS | 40.0% |
| !! | TTAAAGGGTTGGTTCAACCT+TGG | + | chr4.3:15077833-15077852 | MS.gene023532:CDS | 40.0% |
| !! | TTTTGAGGGATTGGAAGAGA+TGG | + | chr4.3:15077455-15077474 | MS.gene023532:CDS | 40.0% |
| !!! | GTCTTCACCGGTTTTGATAA+CGG | - | chr4.3:15076645-15076664 | None:intergenic | 40.0% |
| AGAAAGAGTGAGGTCTTCAC+CGG | - | chr4.3:15076657-15076676 | None:intergenic | 45.0% | |
| CCACGAAACATCACAATCAC+CGG | - | chr4.3:15076933-15076952 | None:intergenic | 45.0% | |
| CGGGGTGGTGATTATTGTAA+GGG | + | chr4.3:15077232-15077251 | MS.gene023532:CDS | 45.0% | |
| GAAGATTGAAGCCATGGATC+GGG | - | chr4.3:15076563-15076582 | None:intergenic | 45.0% | |
| GACACCTCCGTTATCAAAAC+CGG | + | chr4.3:15076635-15076654 | MS.gene023532:CDS | 45.0% | |
| GAGTATCAAACTCCGGTGAA+CGG | + | chr4.3:15076899-15076918 | MS.gene023532:CDS | 45.0% | |
| GCCCTTCTTGAGAAGCTTAA+AGG | + | chr4.3:15077817-15077836 | MS.gene023532:CDS | 45.0% | |
| GGAAAGCCTGTTGAGTTTGA+TGG | + | chr4.3:15078003-15078022 | MS.gene023532:CDS | 45.0% | |
| GTGATTGTGATGTTTCGTGG+AGG | + | chr4.3:15076933-15076952 | MS.gene023532:CDS | 45.0% | |
| TCATCACGATTCGTTATCCG+CGG | - | chr4.3:15077139-15077158 | None:intergenic | 45.0% | |
| TGGGATCGGAGACTAATTTC+AGG | + | chr4.3:15077185-15077204 | MS.gene023532:CDS | 45.0% | |
| TTAGTCTCCGATCCCAAACT+CGG | - | chr4.3:15077181-15077200 | None:intergenic | 45.0% | |
| TTTCCACACGAGTCTTTCCA+CGG | - | chr4.3:15078065-15078084 | None:intergenic | 45.0% | |
| TTTGGATTCCGATACTTCGC+CGG | + | chr4.3:15077792-15077811 | MS.gene023532:CDS | 45.0% | |
| ! | AGTCTTGTGGAGAAAGAGTG+AGG | - | chr4.3:15076667-15076686 | None:intergenic | 45.0% |
| ! | ATGTGGAAAGTGGCGTTTTC+GGG | - | chr4.3:15076614-15076633 | None:intergenic | 45.0% |
| ! | GATACAGAGGTCTTTTACCG+TGG | + | chr4.3:15078045-15078064 | MS.gene023532:CDS | 45.0% |
| ! | GATGTGGAAAGTGGCGTTTT+CGG | - | chr4.3:15076615-15076634 | None:intergenic | 45.0% |
| !! | CATGCTGGTGGATTTCATTC+TGG | + | chr4.3:15077049-15077068 | MS.gene023532:CDS | 45.0% |
| !! | GGATTTTGATGCGGTTCATG+TGG | + | chr4.3:15077729-15077748 | MS.gene023532:CDS | 45.0% |
| !! | TTCGGGTTGAGTGAAGAGAT+TGG | - | chr4.3:15076597-15076616 | None:intergenic | 45.0% |
| !!! | TTCACCGGTTTTGATAACGG+AGG | - | chr4.3:15076642-15076661 | None:intergenic | 45.0% |
| CAAGGAGAAATCCAGTGCCA+CGG | + | chr4.3:15077080-15077099 | MS.gene023532:CDS | 50.0% | |
| CCGGTGATTGTGATGTTTCG+TGG | + | chr4.3:15076930-15076949 | MS.gene023532:CDS | 50.0% | |
| CGCCTGAGCCAGAGAATTAT+TGG | + | chr4.3:15077593-15077612 | MS.gene023532:CDS | 50.0% | |
| GAAGGATGAGGAGAGTCTTG+TGG | - | chr4.3:15076680-15076699 | None:intergenic | 50.0% | |
| GATTTCCACAACGCATGCCA+AGG | - | chr4.3:15077661-15077680 | None:intergenic | 50.0% | |
| GCGGGGTGGTGATTATTGTA+AGG | + | chr4.3:15077231-15077250 | MS.gene023532:CDS | 50.0% | |
| GCTGGTGAAGATTGAAGCCA+TGG | - | chr4.3:15076569-15076588 | None:intergenic | 50.0% | |
| GTAAGGGGAAAACTTTGCCG+CGG | + | chr4.3:15077119-15077138 | MS.gene023532:CDS | 50.0% | |
| GTGAAGAGATTGGTGAGAGC+TGG | - | chr4.3:15076587-15076606 | None:intergenic | 50.0% | |
| TGGATACATGAGAGTTGCGG+TGG | + | chr4.3:15078023-15078042 | MS.gene023532:CDS | 50.0% | |
| TGTGGGGGAATTCGAGTGAA+TGG | + | chr4.3:15077953-15077972 | MS.gene023532:CDS | 50.0% | |
| TTACCGTGGAAAGACTCGTG+TGG | + | chr4.3:15078059-15078078 | MS.gene023532:CDS | 50.0% | |
| ! | CACGATACCGAGTTTGGGAT+CGG | + | chr4.3:15077171-15077190 | MS.gene023532:CDS | 50.0% |
| !! | AAGGGTTGGTTCAACCTTGG+AGG | + | chr4.3:15077836-15077855 | MS.gene023532:CDS | 50.0% |
| !! | AGCTTCTCAAGAAGGGCATC+CGG | - | chr4.3:15077814-15077833 | None:intergenic | 50.0% |
| !! | ATCGGGTGGTTGGTAAGTGA+TGG | - | chr4.3:15076546-15076565 | None:intergenic | 50.0% |
| !! | TGATAACGGAGGTGTCGATG+TGG | - | chr4.3:15076631-15076650 | None:intergenic | 50.0% |
| AGAGACCTTGGCATGCGTTG+TGG | + | chr4.3:15077653-15077672 | MS.gene023532:CDS | 55.0% | |
| ATTACAGCCTCCGTGACAGC+GGG | - | chr4.3:15076719-15076738 | None:intergenic | 55.0% | |
| CTTACCAACCACCCGATCCA+TGG | + | chr4.3:15076549-15076568 | MS.gene023532:CDS | 55.0% | |
| GAGAGTTGCGGTGGATACAG+AGG | + | chr4.3:15078032-15078051 | MS.gene023532:CDS | 55.0% | |
| GATGCGGTTCATGTGGTTCG+TGG | + | chr4.3:15077736-15077755 | MS.gene023532:CDS | 55.0% | |
| GATTACAGCCTCCGTGACAG+CGG | - | chr4.3:15076720-15076739 | None:intergenic | 55.0% | |
| GATTGAAGCCATGGATCGGG+TGG | - | chr4.3:15076560-15076579 | None:intergenic | 55.0% | |
| TCACAGGAGGAGGAGGATGA+AGG | - | chr4.3:15076785-15076804 | None:intergenic | 55.0% | |
| TCCTCCTGTGACGAGCTTCT+CGG | + | chr4.3:15076794-15076813 | MS.gene023532:CDS | 55.0% | |
| !! | AAGGGCATCCGGCGAAGTAT+CGG | - | chr4.3:15077803-15077822 | None:intergenic | 55.0% |
| !! | CACGGATTGGTGGTGGTAAG+GGG | + | chr4.3:15077104-15077123 | MS.gene023532:CDS | 55.0% |
| !! | CCACGGATTGGTGGTGGTAA+GGG | + | chr4.3:15077103-15077122 | MS.gene023532:CDS | 55.0% |
| !! | GGAGGTGTCGATGTGGAAAG+TGG | - | chr4.3:15076624-15076643 | None:intergenic | 55.0% |
| AAGCTCGTCACAGGAGGAGG+AGG | - | chr4.3:15076792-15076811 | None:intergenic | 60.0% | |
| CCCTTACCACCACCAATCCG+TGG | - | chr4.3:15077106-15077125 | None:intergenic | 60.0% | |
| CCGGAAACAGCACCGTTCAC+CGG | - | chr4.3:15076914-15076933 | None:intergenic | 60.0% | |
| CGTTCCGAGAAGCTCGTCAC+AGG | - | chr4.3:15076801-15076820 | None:intergenic | 60.0% | |
| GAAATCCAGTGCCACGGCCA+CGG | + | chr4.3:15077086-15077105 | MS.gene023532:CDS | 60.0% | |
| GAAGCCATGGATCGGGTGGT+TGG | - | chr4.3:15076556-15076575 | None:intergenic | 60.0% | |
| GAGAAGCTCGTCACAGGAGG+AGG | - | chr4.3:15076795-15076814 | None:intergenic | 60.0% | |
| GGAGGAGGAGGATGAAGGAG+CGG | - | chr4.3:15076780-15076799 | None:intergenic | 60.0% | |
| TCCGAGAAGCTCGTCACAGG+AGG | - | chr4.3:15076798-15076817 | None:intergenic | 60.0% | |
| TTACAGCCTCCGTGACAGCG+GGG | - | chr4.3:15076718-15076737 | None:intergenic | 60.0% | |
| !! | CCGGTGAACGGTGCTGTTTC+CGG | + | chr4.3:15076911-15076930 | MS.gene023532:CDS | 60.0% |
| !! | GCCACGGATTGGTGGTGGTA+AGG | + | chr4.3:15077102-15077121 | MS.gene023532:CDS | 60.0% |
| GAGTCGGCGGGAGAAGGATG+AGG | - | chr4.3:15076692-15076711 | None:intergenic | 65.0% | |
| GGAGGAGGATGAAGGAGCGG+TGG | - | chr4.3:15076777-15076796 | None:intergenic | 65.0% | |
| GGAGGATGAAGGAGCGGTGG+CGG | - | chr4.3:15076774-15076793 | None:intergenic | 65.0% | |
| TACAGCCTCCGTGACAGCGG+GGG | - | chr4.3:15076717-15076736 | None:intergenic | 65.0% | |
| CCAATCCGTGGCCGTGGCAC+TGG | - | chr4.3:15077094-15077113 | None:intergenic | 70.0% | |
| CCACCACCAATCCGTGGCCG+TGG | - | chr4.3:15077100-15077119 | None:intergenic | 70.0% | |
| CCAGTGCCACGGCCACGGAT+TGG | + | chr4.3:15077091-15077110 | MS.gene023532:CDS | 70.0% | |
| CGACTCCACCCCCGCTGTCA+CGG | + | chr4.3:15076706-15076725 | MS.gene023532:CDS | 70.0% | |
| CGTGACAGCGGGGGTGGAGT+CGG | - | chr4.3:15076708-15076727 | None:intergenic | 70.0% | |
| ! | GGATGAAGGAGCGGTGGCGG+AGG | - | chr4.3:15076771-15076790 | None:intergenic | 70.0% |
| !! | CCACGGCCACGGATTGGTGG+TGG | + | chr4.3:15077097-15077116 | MS.gene023532:CDS | 70.0% |
| !! | GTGCCACGGCCACGGATTGG+TGG | + | chr4.3:15077094-15077113 | MS.gene023532:CDS | 70.0% |
| ACAGCGGGGGTGGAGTCGGC+GGG | - | chr4.3:15076704-15076723 | None:intergenic | 75.0% | |
| AGCCTCCGTGACAGCGGGGG+TGG | - | chr4.3:15076714-15076733 | None:intergenic | 75.0% | |
| CTCCACCCCCGCTGTCACGG+AGG | + | chr4.3:15076709-15076728 | MS.gene023532:CDS | 75.0% | |
| GACAGCGGGGGTGGAGTCGG+CGG | - | chr4.3:15076705-15076724 | None:intergenic | 75.0% | |
| GGGGTGGAGTCGGCGGGAGA+AGG | - | chr4.3:15076698-15076717 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 15076398 | 15078134 | 15076398 | ID=MS.gene023532 |
| chr4.3 | mRNA | 15076398 | 15078134 | 15076398 | ID=MS.gene023532.t1;Parent=MS.gene023532 |
| chr4.3 | exon | 15076398 | 15077253 | 15076398 | ID=MS.gene023532.t1.exon1;Parent=MS.gene023532.t1 |
| chr4.3 | CDS | 15076398 | 15077253 | 15076398 | ID=cds.MS.gene023532.t1;Parent=MS.gene023532.t1 |
| chr4.3 | exon | 15077293 | 15078134 | 15077293 | ID=MS.gene023532.t1.exon2;Parent=MS.gene023532.t1 |
| chr4.3 | CDS | 15077293 | 15078134 | 15077293 | ID=cds.MS.gene023532.t1;Parent=MS.gene023532.t1 |
| Gene Sequence |
| Protein sequence |
