AlfalfaGEDB | MS.gene01008

M. sativa cultivar XinJiangDaYe / MS.gene01008

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01008.t1	XP_003629616.1	95	119	5	1	1	118	1	119	5.20E-53	216.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01008.t1	O23262	44.2	113	53	4	12	118	9	117	3.1e-14	79.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01008.t1	B7FMN1	95.0	119	5	1	1	118	1	119	3.7e-53	216.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene01008	MS.gene035341	PPI
MS.gene041566	MS.gene01008	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01008.t1	MTR_8g083150	94.958	119	5	1	1	118	1	119	3.51e-79	228
MS.gene01008.t1	MTR_8g083150	94.828	116	5	1	1	115	1	116	3.68e-77	223
MS.gene01008.t1	MTR_4g119860	35.833	120	55	5	14	115	10	125	5.70e-12	58.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01008.t1	AT4G14010	44.348	115	49	5	10	118	12	117	3.15e-23	87.0
MS.gene01008.t1	AT1G02900	36.522	115	65	3	6	116	10	120	1.47e-12	60.1
MS.gene01008.t1	AT4G15800	37.190	121	64	5	1	115	1	115	3.38e-11	56.2

Find 0 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	CCTCTATTATTAGAATTTGA+AGG	-	14606:657-676	None:intergenic	25.0%
!	CCTTCAAATTCTAATAATAG+AGG	+	14606:654-673	MS.gene01008:CDS	25.0%
!	CTATTATTAGAATTTGAAGG+TGG	-	14606:654-673	None:intergenic	25.0%
	AAGCTTATAGTAAATCTGCA+GGG	+	14606:619-638	MS.gene01008:CDS	30.0%
	AGAGATAAACCAGTTTGTAA+TGG	+	14606:582-601	MS.gene01008:CDS	30.0%
	CAAAAGAGATACATTTCTGA+AGG	+	14606:549-568	MS.gene01008:CDS	30.0%
	TCAAGAAGATGAACAATTGA+TGG	+	14606:497-516	MS.gene01008:CDS	30.0%
	TTATTAGAATTTGAAGGTGG+AGG	-	14606:651-670	None:intergenic	30.0%
!	GTTCTAAGTATTATCGTTGT+AGG	+	14606:679-698	MS.gene01008:CDS	30.0%
!	TGAAATAAGCAGAAGGTTTT+TGG	+	14606:524-543	MS.gene01008:CDS	30.0%
	GAAGCTTATAGTAAATCTGC+AGG	+	14606:618-637	MS.gene01008:CDS	35.0%
	GATAAACCAGTTTGTAATGG+TGG	+	14606:585-604	MS.gene01008:CDS	35.0%
	TTCTTGATTGCATTCAGCTA+TGG	-	14606:484-503	None:intergenic	35.0%
	CATCATGCAAGCATATGCAA+TGG	+	14606:456-475	MS.gene01008:CDS	40.0%
	GCATGAAGTAGAAGAAGGTA+AGG	-	14606:386-405	None:intergenic	40.0%
!	GAAGAGCATGAAGTAGAAGA+AGG	-	14606:391-410	None:intergenic	40.0%
!	TGGAGTCTGAAATAAGCAGA+AGG	+	14606:517-536	MS.gene01008:CDS	40.0%
	CCTGCACCACCATTACAAAC+TGG	-	14606:594-613	None:intergenic	50.0%
!	CCAGTTTGTAATGGTGGTGC+AGG	+	14606:591-610	MS.gene01008:CDS	50.0%
!	GTTTGTAATGGTGGTGCAGG+TGG	+	14606:594-613	MS.gene01008:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
14606	gene	357	713	357	ID=MS.gene01008
14606	mRNA	357	713	357	ID=MS.gene01008.t1;Parent=MS.gene01008
14606	exon	357	713	357	ID=MS.gene01008.t1.exon1;Parent=MS.gene01008.t1
14606	CDS	357	713	357	ID=cds.MS.gene01008.t1;Parent=MS.gene01008.t1

Gene Sequence	>MS.gene01008 ATGAACTCAAAATCTACAATTAAACTCCTTACCTTCTTCTACTTCATGCTCTTCAGCTTCATGAATTTAAGCAGCACTGTAATATCATTGAGTAGTAATCATCATGCAAGCATATGCAATGGTTCCATAGCTGAATGCAATCAAGAAGATGAACAATTGATGGAGTCTGAAATAAGCAGAAGGTTTTTGGAGCAAAAGAGATACATTTCTGAAGGAGCTCTTAAGAGAGATAAACCAGTTTGTAATGGTGGTGCAGGTGGTGAAGCTTATAGTAAATCTGCAGGGTGTATTCCTCCACCTTCAAATTCTAATAATAGAGGATGTTCTAAGTATTATCGTTGTAGGTCTGATTCTTGA
Protein sequence	>MS.gene01008.t1 MNSKSTIKLLTFFYFMLFSFMNLSSTVISLSSNHHASICNGSIAECNQEDEQLMESEISRRFLEQKRYISEGALKRDKPVCNGGAGGEAYSKSAGCIPPPSNSNNRGCSKYYRCRSDS