Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010551.t1 | XP_003612065.1 | 98.6 | 438 | 6 | 0 | 1 | 438 | 1 | 438 | 1.00E-255 | 892.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010551.t1 | Q9FJZ3 | 66.5 | 436 | 138 | 4 | 2 | 436 | 1 | 429 | 1.3e-169 | 597.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010551.t1 | G7KF03 | 98.6 | 438 | 6 | 0 | 1 | 438 | 1 | 438 | 7.4e-256 | 892.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010551 | MS.gene83173 | PPI |
| MS.gene010551 | MS.gene031718 | PPI |
| MS.gene010551 | MS.gene006591 | PPI |
| MS.gene010551 | MS.gene065919 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010551.t1 | MTR_5g020890 | 98.630 | 438 | 6 | 0 | 1 | 438 | 1 | 438 | 0.0 | 899 |
| MS.gene010551.t1 | MTR_3g112060 | 64.916 | 419 | 136 | 7 | 2 | 418 | 1 | 410 | 0.0 | 548 |
| MS.gene010551.t1 | MTR_1g085430 | 56.642 | 399 | 167 | 3 | 7 | 403 | 9 | 403 | 1.68e-165 | 471 |
| MS.gene010551.t1 | MTR_1g085420 | 57.252 | 393 | 164 | 2 | 11 | 403 | 15 | 403 | 2.52e-163 | 466 |
| MS.gene010551.t1 | MTR_1g085310 | 55.919 | 397 | 169 | 4 | 8 | 404 | 10 | 400 | 6.23e-163 | 465 |
| MS.gene010551.t1 | MTR_4g043760 | 53.924 | 395 | 179 | 3 | 5 | 399 | 9 | 400 | 1.50e-160 | 459 |
| MS.gene010551.t1 | MTR_1g085350 | 54.040 | 396 | 176 | 4 | 8 | 403 | 69 | 458 | 3.91e-155 | 447 |
| MS.gene010551.t1 | MTR_7g111740 | 54.987 | 371 | 162 | 3 | 29 | 399 | 60 | 425 | 7.97e-150 | 432 |
| MS.gene010551.t1 | MTR_7g073620 | 51.958 | 383 | 181 | 2 | 31 | 411 | 11 | 392 | 2.03e-146 | 423 |
| MS.gene010551.t1 | MTR_8g005670 | 52.455 | 387 | 181 | 2 | 24 | 408 | 56 | 441 | 3.89e-146 | 424 |
| MS.gene010551.t1 | MTR_7g073550 | 49.383 | 405 | 196 | 3 | 15 | 411 | 37 | 440 | 7.36e-144 | 418 |
| MS.gene010551.t1 | MTR_7g073550 | 50.914 | 383 | 185 | 2 | 31 | 411 | 58 | 439 | 8.47e-144 | 418 |
| MS.gene010551.t1 | MTR_1g085320 | 51.899 | 395 | 167 | 5 | 11 | 403 | 14 | 387 | 4.22e-143 | 414 |
| MS.gene010551.t1 | MTR_8g005270 | 51.421 | 387 | 185 | 2 | 24 | 408 | 39 | 424 | 1.02e-142 | 415 |
| MS.gene010551.t1 | MTR_8g006550 | 51.421 | 387 | 185 | 2 | 24 | 408 | 59 | 444 | 1.59e-142 | 415 |
| MS.gene010551.t1 | MTR_2g090390 | 46.791 | 374 | 195 | 2 | 30 | 399 | 39 | 412 | 2.76e-127 | 375 |
| MS.gene010551.t1 | MTR_4g078230 | 43.236 | 377 | 211 | 1 | 31 | 404 | 39 | 415 | 7.83e-118 | 351 |
| MS.gene010551.t1 | MTR_0005s0150 | 55.517 | 290 | 127 | 2 | 110 | 399 | 14 | 301 | 2.35e-117 | 345 |
| MS.gene010551.t1 | MTR_7g073320 | 33.333 | 117 | 64 | 1 | 295 | 411 | 17 | 119 | 5.51e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010551.t1 | AT5G66460 | 66.514 | 436 | 138 | 4 | 2 | 436 | 1 | 429 | 0.0 | 594 |
| MS.gene010551.t1 | AT3G10890 | 53.580 | 405 | 184 | 4 | 2 | 403 | 1 | 404 | 3.74e-168 | 479 |
| MS.gene010551.t1 | AT3G10900 | 54.568 | 405 | 177 | 6 | 2 | 402 | 1 | 402 | 2.82e-160 | 458 |
| MS.gene010551.t1 | AT5G01930 | 50.758 | 396 | 189 | 3 | 15 | 405 | 28 | 422 | 1.22e-147 | 428 |
| MS.gene010551.t1 | AT1G02310 | 52.368 | 380 | 169 | 5 | 26 | 399 | 24 | 397 | 2.72e-134 | 392 |
| MS.gene010551.t1 | AT1G02310 | 52.368 | 380 | 169 | 5 | 26 | 399 | 44 | 417 | 5.23e-134 | 392 |
| MS.gene010551.t1 | AT2G20680 | 46.133 | 375 | 200 | 1 | 30 | 402 | 41 | 415 | 7.19e-125 | 369 |
| MS.gene010551.t1 | AT4G28320 | 43.829 | 397 | 218 | 2 | 8 | 399 | 15 | 411 | 1.15e-124 | 369 |
| MS.gene010551.t1 | AT3G30540 | 48.333 | 360 | 140 | 7 | 2 | 355 | 1 | 320 | 9.53e-115 | 340 |
Find 92 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACAATGAACAAATGTTTA+AGG | 0.138199 | 5.1:+12163761 | MS.gene010551:CDS |
| GGCATTCATTTCATGTTAAA+TGG | 0.157356 | 5.1:+12163558 | MS.gene010551:CDS |
| CCAATTCTAGTAGCAGAATT+TGG | 0.190502 | 5.1:+12166118 | MS.gene010551:CDS |
| GGAAAATCATTTAAAGATTC+AGG | 0.202299 | 5.1:+12166139 | MS.gene010551:CDS |
| TTGCATAAATCTTCCGAATA+AGG | 0.205768 | 5.1:-12166369 | None:intergenic |
| TTTAGGAACCCTGTTGTTAA+AGG | 0.213923 | 5.1:+12164212 | MS.gene010551:CDS |
| CAAATGGCTTTAATGCTTAC+TGG | 0.225498 | 5.1:+12163595 | MS.gene010551:CDS |
| GATCACGGAAATGGCTTCTT+TGG | 0.251760 | 5.1:+12165374 | MS.gene010551:CDS |
| GTGAACAATTATGAGAGTTT+TGG | 0.256433 | 5.1:+12164119 | MS.gene010551:CDS |
| GTTAATAGTAGGATTAAATT+TGG | 0.263329 | 5.1:-12165472 | None:intergenic |
| CCAAATTCTGCTACTAGAAT+TGG | 0.275704 | 5.1:-12166118 | None:intergenic |
| GGAAATAGAGGAAGACAAAT+TGG | 0.293388 | 5.1:+12166457 | MS.gene010551:CDS |
| CATCAGATGATGATTTCTTT+AGG | 0.293457 | 5.1:+12164195 | MS.gene010551:CDS |
| TGATATTGAAACACTCTTGA+TGG | 0.294230 | 5.1:-12163497 | None:intergenic |
| CTCATAAACTATACCTTATT+CGG | 0.322951 | 5.1:+12166356 | MS.gene010551:CDS |
| CAGCGAGTGGAGCATTGTTC+TGG | 0.358097 | 5.1:+12166239 | MS.gene010551:CDS |
| ACACTCTTGATGGACCAAAA+TGG | 0.361828 | 5.1:-12163487 | None:intergenic |
| TTAAAGCCATTTGCATAGTA+AGG | 0.366576 | 5.1:-12163585 | None:intergenic |
| GATATATGCGTCTGCGAAAA+GGG | 0.371629 | 5.1:+12166210 | MS.gene010551:CDS |
| GACTTACTGTTGCTAGAACT+TGG | 0.374694 | 5.1:+12163691 | MS.gene010551:CDS |
| TGATCCATCTCAGAGATTCA+AGG | 0.381469 | 5.1:+12163635 | MS.gene010551:CDS |
| AACTGGGCTAGAAGTAATAA+TGG | 0.393024 | 5.1:+12164161 | MS.gene010551:CDS |
| AGCTCCCATGCCATGATTGT+TGG | 0.395030 | 5.1:-12164785 | None:intergenic |
| ATGTAGAAACCTTTAACAAC+AGG | 0.395168 | 5.1:-12164221 | None:intergenic |
| GATGCCTGGGATTCGATTGT+TGG | 0.395930 | 5.1:-12165517 | None:intergenic |
| TTTCTACATCAATCATGTTA+AGG | 0.399179 | 5.1:+12164235 | MS.gene010551:CDS |
| TTGTTGGAAGCTGGACTTGA+AGG | 0.413233 | 5.1:+12165420 | MS.gene010551:CDS |
| TCCTTCAGGAAGGACTATTC+AGG | 0.416711 | 5.1:+12164835 | MS.gene010551:CDS |
| GTCCATGGCTTGTTGCTTCA+CGG | 0.424293 | 5.1:-12163671 | None:intergenic |
| AGATATATGCGTCTGCGAAA+AGG | 0.430041 | 5.1:+12166209 | MS.gene010551:CDS |
| AGGTGTACGTCAGATCCTTC+AGG | 0.440657 | 5.1:+12164821 | MS.gene010551:CDS |
| GGATTAAATTTGGTCCTTTG+TGG | 0.443978 | 5.1:-12165462 | None:intergenic |
| TATTGAAAAGTTGATCTCTC+TGG | 0.448941 | 5.1:-12166174 | None:intergenic |
| GGAAGAAGCAGTATGTGAAC+TGG | 0.448948 | 5.1:+12164144 | MS.gene010551:CDS |
| ATAGGGTTGGATCACGGAAA+TGG | 0.451025 | 5.1:+12165365 | MS.gene010551:intron |
| AATCCTACTATTAACAACAT+AGG | 0.452500 | 5.1:+12165480 | MS.gene010551:CDS |
| TGGAAAAGAGCTAGATTTAA+CGG | 0.453928 | 5.1:+12166412 | MS.gene010551:CDS |
| CTTTGGTGAAGTCCATTGAC+AGG | 0.456470 | 5.1:+12165391 | MS.gene010551:CDS |
| AGTCCTTTGCAATATTCTCC+TGG | 0.460187 | 5.1:+12163735 | MS.gene010551:CDS |
| TTCCACAGACTGTTCTCAAC+AGG | 0.466531 | 5.1:+12164726 | MS.gene010551:intron |
| GGAAATCCTTACTATGCAAA+TGG | 0.467525 | 5.1:+12163579 | MS.gene010551:CDS |
| AGGAATCACTTGTTGGAAGC+TGG | 0.470425 | 5.1:+12165411 | MS.gene010551:CDS |
| CAACAAGTGATTCCTGTCAA+TGG | 0.481574 | 5.1:-12165403 | None:intergenic |
| ATCCTACTATTAACAACATA+GGG | 0.485405 | 5.1:+12165481 | MS.gene010551:CDS |
| ACGGTTGCAAAATCGATGCC+TGG | 0.487815 | 5.1:-12165531 | None:intergenic |
| GTCCCTATGTTGTTAATAGT+AGG | 0.488737 | 5.1:-12165483 | None:intergenic |
| AGAACTTGGGCTTTCAGTGA+TGG | 0.491493 | 5.1:+12163705 | MS.gene010551:CDS |
| CATTGACAGGAATCACTTGT+TGG | 0.492372 | 5.1:+12165404 | MS.gene010551:CDS |
| CAAAGATGATCCAACAATCA+TGG | 0.501682 | 5.1:+12164775 | MS.gene010551:CDS |
| GAGCTAGATTTAACGGAAGA+AGG | 0.504274 | 5.1:+12166419 | MS.gene010551:CDS |
| TTAGAGCATATTGTGCGTCT+AGG | 0.506071 | 5.1:-12166090 | None:intergenic |
| ACTTACTGTTGCTAGAACTT+GGG | 0.508850 | 5.1:+12163692 | MS.gene010551:CDS |
| GAATCTTTCGACGATGGCTA+TGG | 0.509733 | 5.1:+12166283 | MS.gene010551:CDS |
| TTCTGGCAACTTCTTACAGA+AGG | 0.511415 | 5.1:+12166256 | MS.gene010551:CDS |
| GAAACCTTGAATCTCTGAGA+TGG | 0.516474 | 5.1:-12163639 | None:intergenic |
| TTCCGTGAAGCAACAAGCCA+TGG | 0.522141 | 5.1:+12163669 | MS.gene010551:CDS |
| GATGGACCAAAATGGCCAAA+AGG | 0.523403 | 5.1:-12163479 | None:intergenic |
| TCGCGCGTTGGTGGAAATAG+AGG | 0.524094 | 5.1:+12166445 | MS.gene010551:CDS |
| GCAACTTCTTACAGAAGGAA+TGG | 0.529256 | 5.1:+12166261 | MS.gene010551:CDS |
| TGTTGGAAGCTGGACTTGAA+GGG | 0.537083 | 5.1:+12165421 | MS.gene010551:CDS |
| AATATCAATGTAGAAGCTGC+TGG | 0.539763 | 5.1:+12163513 | MS.gene010551:CDS |
| CGGTTGCAAAATCGATGCCT+GGG | 0.543074 | 5.1:-12165530 | None:intergenic |
| CAGAACAATGCTCCACTCGC+TGG | 0.548466 | 5.1:-12166238 | None:intergenic |
| ATTGCCAACAATCGAATCCC+AGG | 0.555801 | 5.1:+12165513 | MS.gene010551:CDS |
| GATGGCTATGGAATATCGCT+TGG | 0.563874 | 5.1:+12166295 | MS.gene010551:CDS |
| TTCATTGTTATCCCGACCAA+TGG | 0.564049 | 5.1:+12165553 | MS.gene010551:CDS |
| ATGATCCAACAATCATGGCA+TGG | 0.566474 | 5.1:+12164780 | MS.gene010551:CDS |
| ATTTGTTCATTGTAGAAACC+AGG | 0.567175 | 5.1:-12163753 | None:intergenic |
| CGCATATATCTTGTAGTACA+CGG | 0.572125 | 5.1:-12166197 | None:intergenic |
| ATATCTGAGGCTAGAAAGCA+TGG | 0.573786 | 5.1:+12164074 | MS.gene010551:CDS |
| AATTAAGCTGATACTAAGCT+TGG | 0.574063 | 5.1:+12164097 | MS.gene010551:CDS |
| TGATCCAACAATCATGGCAT+GGG | 0.574244 | 5.1:+12164781 | MS.gene010551:CDS |
| AGAAGGTCTTCGCGCGTTGG+TGG | 0.574402 | 5.1:+12166436 | MS.gene010551:CDS |
| GGAAGAAGGTCTTCGCGCGT+TGG | 0.579935 | 5.1:+12166433 | MS.gene010551:CDS |
| TTCTAGCAACAGTAAGTCCA+TGG | 0.583102 | 5.1:-12163686 | None:intergenic |
| ACTTGGGCTTTCAGTGATGG+TGG | 0.586210 | 5.1:+12163708 | MS.gene010551:CDS |
| AAAAGGGGAGGTCCAGCGAG+TGG | 0.590584 | 5.1:+12166226 | MS.gene010551:CDS |
| TTGATTATAGGGTTGGATCA+CGG | 0.595318 | 5.1:+12165359 | MS.gene010551:intron |
| AATGTAGAAGCTGCTGGTGA+TGG | 0.601670 | 5.1:+12163519 | MS.gene010551:CDS |
| GAAGAAGCAGTATGTGAACT+GGG | 0.610382 | 5.1:+12164145 | MS.gene010551:CDS |
| ACCTGAATAGTCCTTCCTGA+AGG | 0.619157 | 5.1:-12164836 | None:intergenic |
| ATATATGCGTCTGCGAAAAG+GGG | 0.632807 | 5.1:+12166211 | MS.gene010551:CDS |
| TGTAGAAACCTTTAACAACA+GGG | 0.641407 | 5.1:-12164220 | None:intergenic |
| TATGCGTCTGCGAAAAGGGG+AGG | 0.642345 | 5.1:+12166214 | MS.gene010551:CDS |
| AAACCAGGAGAATATTGCAA+AGG | 0.645714 | 5.1:-12163738 | None:intergenic |
| TTGGTCGGGATAACAATGAA+CGG | 0.658478 | 5.1:-12165550 | None:intergenic |
| GAAGGATCTGACGTACACCT+AGG | 0.660094 | 5.1:-12164818 | None:intergenic |
| GGGAGCTTATGAATGAACCT+AGG | 0.661088 | 5.1:+12164801 | MS.gene010551:CDS |
| GGAATGGAATCTTTCGACGA+TGG | 0.663000 | 5.1:+12166277 | MS.gene010551:CDS |
| AGATCGCTAATGAACGACGA+TGG | 0.665356 | 5.1:+12166392 | MS.gene010551:CDS |
| ATGGACAATCAACACCACAA+AGG | 0.668997 | 5.1:+12165448 | MS.gene010551:CDS |
| GTACGTCAGATCCTTCAGGA+AGG | 0.713213 | 5.1:+12164825 | MS.gene010551:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATATAATATATACG+AGG | + | chr5.1:12164648-12164667 | MS.gene010551:intron | 10.0% |
| !!! | TTAAAAATTAATTTTGCATT+TGG | - | chr5.1:12164597-12164616 | None:intergenic | 10.0% |
| !! | AAAAAGAAAAAAAGAAAAAG+GGG | - | chr5.1:12164911-12164930 | None:intergenic | 15.0% |
| !! | AATGATTTAACAATTATGAT+AGG | - | chr5.1:12165077-12165096 | None:intergenic | 15.0% |
| !! | CAAAAAGAAAAAAAGAAAAA+GGG | - | chr5.1:12164912-12164931 | None:intergenic | 15.0% |
| !! | GTTCAATTTAATATATCATT+TGG | + | chr5.1:12163988-12164007 | MS.gene010551:intron | 15.0% |
| !! | GTTTATTACGATTAAAAAAT+AGG | - | chr5.1:12165179-12165198 | None:intergenic | 15.0% |
| !! | TAATTGAAGTATAATTTCTT+TGG | - | chr5.1:12165010-12165029 | None:intergenic | 15.0% |
| !! | TCAAAAAGAAAAAAAGAAAA+AGG | - | chr5.1:12164913-12164932 | None:intergenic | 15.0% |
| !! | TGAATATGAAAATTATCATA+TGG | + | chr5.1:12164300-12164319 | MS.gene010551:intron | 15.0% |
| !! | TTAACTCATAAATAAGAATA+AGG | - | chr5.1:12164504-12164523 | None:intergenic | 15.0% |
| !!! | ACAATTTTCAACTTTTTTTA+CGG | - | chr5.1:12163928-12163947 | None:intergenic | 15.0% |
| !!! | ATTATGAACATTTTTTACAT+AGG | + | chr5.1:12165048-12165067 | MS.gene010551:intron | 15.0% |
| !!! | ATTTTTTAATCGTAATAAAC+TGG | + | chr5.1:12165179-12165198 | MS.gene010551:intron | 15.0% |
| !!! | TATTTTTCATAAACTATTCA+AGG | + | chr5.1:12163789-12163808 | MS.gene010551:intron | 15.0% |
| !!! | TGATAAAGAATTTTTTACTT+TGG | - | chr5.1:12165683-12165702 | None:intergenic | 15.0% |
| !! | GTTAATAGTAGGATTAAATT+TGG | - | chr5.1:12165475-12165494 | None:intergenic | 20.0% |
| !! | TAAAGTCTTACCAATATTAT+TGG | + | chr5.1:12165232-12165251 | MS.gene010551:intron | 20.0% |
| !! | TTAAAGCTTCAACAAAAAAA+CGG | - | chr5.1:12165861-12165880 | None:intergenic | 20.0% |
| !!! | AAATAGTAGTTCTCTAATTT+TGG | - | chr5.1:12165628-12165647 | None:intergenic | 20.0% |
| !!! | AAATTAATTTTGCATTTGGA+TGG | - | chr5.1:12164593-12164612 | None:intergenic | 20.0% |
| !!! | AATAGTAGTTCTCTAATTTT+GGG | - | chr5.1:12165627-12165646 | None:intergenic | 20.0% |
| !!! | ACTATATTTTTAGTTACCAT+TGG | - | chr5.1:12165572-12165591 | None:intergenic | 20.0% |
| !!! | ACTGTTTAACTTTTGATTAT+AGG | + | chr5.1:12165347-12165366 | MS.gene010551:intron | 20.0% |
| !!! | AGCTTTATGTAAAAACTAAA+AGG | - | chr5.1:12164360-12164379 | None:intergenic | 20.0% |
| !!! | ATTTTTTTGTCTTAAACTTC+CGG | + | chr5.1:12163950-12163969 | MS.gene010551:intron | 20.0% |
| !!! | CTGTTTAACTTTTGATTATA+GGG | + | chr5.1:12165348-12165367 | MS.gene010551:intron | 20.0% |
| !!! | TTACATAAAGCTATGTTTTT+AGG | + | chr5.1:12164368-12164387 | MS.gene010551:intron | 20.0% |
| !!! | TTTAAAGTCACATATATGAT+TGG | + | chr5.1:12165119-12165138 | MS.gene010551:intron | 20.0% |
| !!! | TTTGATGTAATTTATTTTCC+TGG | + | chr5.1:12164700-12164719 | MS.gene010551:intron | 20.0% |
| ! | AATCCTACTATTAACAACAT+AGG | + | chr5.1:12165480-12165499 | MS.gene010551:CDS | 25.0% |
| ! | AGATTAATTGGTTATTGGAT+CGG | - | chr5.1:12164554-12164573 | None:intergenic | 25.0% |
| ! | ATCCTACTATTAACAACATA+GGG | + | chr5.1:12165481-12165500 | MS.gene010551:CDS | 25.0% |
| ! | CCAAATGTACATGATTTAAT+TGG | + | chr5.1:12165941-12165960 | MS.gene010551:intron | 25.0% |
| ! | CCAATTAAATCATGTACATT+TGG | - | chr5.1:12165944-12165963 | None:intergenic | 25.0% |
| ! | CTACAATGAACAAATGTTTA+AGG | + | chr5.1:12163761-12163780 | MS.gene010551:CDS | 25.0% |
| ! | CTCATAAACTATACCTTATT+CGG | + | chr5.1:12166356-12166375 | MS.gene010551:CDS | 25.0% |
| ! | GGAAAATCATTTAAAGATTC+AGG | + | chr5.1:12166139-12166158 | MS.gene010551:CDS | 25.0% |
| ! | GTTTCTACTACCAATAATAT+TGG | - | chr5.1:12165245-12165264 | None:intergenic | 25.0% |
| ! | TTTCTACATCAATCATGTTA+AGG | + | chr5.1:12164235-12164254 | MS.gene010551:CDS | 25.0% |
| !! | GAAACTTTTGCAATATGATT+TGG | + | chr5.1:12165260-12165279 | MS.gene010551:intron | 25.0% |
| !! | TTGTATCTGATTTTCTATGT+TGG | + | chr5.1:12164025-12164044 | MS.gene010551:intron | 25.0% |
| !!! | TATTTTTAGTTACCATTGGT+CGG | - | chr5.1:12165568-12165587 | None:intergenic | 25.0% |
| !!! | TTAACTTTTGATTATAGGGT+TGG | + | chr5.1:12165352-12165371 | MS.gene010551:intron | 25.0% |
| !!! | TTTTGCTTTGTTTTTCCTTT+TGG | + | chr5.1:12163464-12163483 | MS.gene010551:CDS | 25.0% |
| AAGAAAAAAAGAAAAAGGGG+TGG | - | chr5.1:12164908-12164927 | None:intergenic | 30.0% | |
| AAGTGAATTTGACAGAATCA+TGG | - | chr5.1:12165916-12165935 | None:intergenic | 30.0% | |
| AATTAAGCTGATACTAAGCT+TGG | + | chr5.1:12164097-12164116 | MS.gene010551:CDS | 30.0% | |
| ATGTAGAAACCTTTAACAAC+AGG | - | chr5.1:12164224-12164243 | None:intergenic | 30.0% | |
| ATTTGTTCATTGTAGAAACC+AGG | - | chr5.1:12163756-12163775 | None:intergenic | 30.0% | |
| CAATAACCAATTAATCTCAG+AGG | + | chr5.1:12164557-12164576 | MS.gene010551:intron | 30.0% | |
| CATCAGATGATGATTTCTTT+AGG | + | chr5.1:12164195-12164214 | MS.gene010551:CDS | 30.0% | |
| GGCATTCATTTCATGTTAAA+TGG | + | chr5.1:12163558-12163577 | MS.gene010551:CDS | 30.0% | |
| TAAATTGAACAATTTCCGCA+GGG | - | chr5.1:12163978-12163997 | None:intergenic | 30.0% | |
| TAATCCAAAGTTAGATTACG+AGG | + | chr5.1:12163875-12163894 | MS.gene010551:intron | 30.0% | |
| TAATCTAACTTTGGATTACG+AGG | - | chr5.1:12163873-12163892 | None:intergenic | 30.0% | |
| TGATATTGAAACACTCTTGA+TGG | - | chr5.1:12163500-12163519 | None:intergenic | 30.0% | |
| TGGAAAAGAGCTAGATTTAA+CGG | + | chr5.1:12166412-12166431 | MS.gene010551:CDS | 30.0% | |
| TGTAGAAACCTTTAACAACA+GGG | - | chr5.1:12164223-12164242 | None:intergenic | 30.0% | |
| TTAAAGCCATTTGCATAGTA+AGG | - | chr5.1:12163588-12163607 | None:intergenic | 30.0% | |
| TTAAATTGAACAATTTCCGC+AGG | - | chr5.1:12163979-12163998 | None:intergenic | 30.0% | |
| TTGCATAAATCTTCCGAATA+AGG | - | chr5.1:12166372-12166391 | None:intergenic | 30.0% | |
| TTTACCTCGTAATCTAACTT+TGG | - | chr5.1:12163882-12163901 | None:intergenic | 30.0% | |
| TTTCTTTGATTGCACAAACA+GGG | + | chr5.1:12166006-12166025 | MS.gene010551:intron | 30.0% | |
| ! | AACTTTTGTCAAAATCACGA+TGG | + | chr5.1:12165886-12165905 | MS.gene010551:intron | 30.0% |
| ! | ACTTGTTTACAACGCAATTT+TGG | + | chr5.1:12165651-12165670 | MS.gene010551:intron | 30.0% |
| ! | ATCTGATTTTCTATGTTGGT+TGG | + | chr5.1:12164029-12164048 | MS.gene010551:intron | 30.0% |
| ! | CTTGTTTACAACGCAATTTT+GGG | + | chr5.1:12165652-12165671 | MS.gene010551:intron | 30.0% |
| ! | GTGAACAATTATGAGAGTTT+TGG | + | chr5.1:12164119-12164138 | MS.gene010551:CDS | 30.0% |
| ! | TAATTTTGCATTTGGATGGT+GGG | - | chr5.1:12164589-12164608 | None:intergenic | 30.0% |
| ! | TATTGAAAAGTTGATCTCTC+TGG | - | chr5.1:12166177-12166196 | None:intergenic | 30.0% |
| ! | TTAATTTTGCATTTGGATGG+TGG | - | chr5.1:12164590-12164609 | None:intergenic | 30.0% |
| ! | TTTTCTTTGATTGCACAAAC+AGG | + | chr5.1:12166005-12166024 | MS.gene010551:intron | 30.0% |
| !! | AACAATTATGAGAGTTTTGG+AGG | + | chr5.1:12164122-12164141 | MS.gene010551:CDS | 30.0% |
| !! | ATTAGACCTCTGAGATTAAT+TGG | - | chr5.1:12164566-12164585 | None:intergenic | 30.0% |
| !! | CTCTGAGATTAATTGGTTAT+TGG | - | chr5.1:12164559-12164578 | None:intergenic | 30.0% |
| !! | GTTGGATTTTGTTATATCTG+AGG | + | chr5.1:12164061-12164080 | MS.gene010551:CDS | 30.0% |
| !!! | ACAATTATGAGAGTTTTGGA+GGG | + | chr5.1:12164123-12164142 | MS.gene010551:CDS | 30.0% |
| !!! | AGGAGTATAGTTTTGTTGTT+AGG | + | chr5.1:12164668-12164687 | MS.gene010551:intron | 30.0% |
| !!! | ATTTTTAGTTACCATTGGTC+GGG | - | chr5.1:12165567-12165586 | None:intergenic | 30.0% |
| AAACCAGGAGAATATTGCAA+AGG | - | chr5.1:12163741-12163760 | None:intergenic | 35.0% | |
| AATATCAATGTAGAAGCTGC+TGG | + | chr5.1:12163513-12163532 | MS.gene010551:CDS | 35.0% | |
| ACTGTCAATGAGAGGAATAA+AGG | - | chr5.1:12164948-12164967 | None:intergenic | 35.0% | |
| ACTTACTGTTGCTAGAACTT+GGG | + | chr5.1:12163692-12163711 | MS.gene010551:CDS | 35.0% | |
| CAAAGATGATCCAACAATCA+TGG | + | chr5.1:12164775-12164794 | MS.gene010551:CDS | 35.0% | |
| CATGATTCTCAACATGTACT+TGG | - | chr5.1:12165807-12165826 | None:intergenic | 35.0% | |
| CCAAATTCTGCTACTAGAAT+TGG | - | chr5.1:12166121-12166140 | None:intergenic | 35.0% | |
| CCAATTCTAGTAGCAGAATT+TGG | + | chr5.1:12166118-12166137 | MS.gene010551:CDS | 35.0% | |
| CGCATATATCTTGTAGTACA+CGG | - | chr5.1:12166200-12166219 | None:intergenic | 35.0% | |
| GACTCTAATTGAGAATGCAT+TGG | + | chr5.1:12164413-12164432 | MS.gene010551:intron | 35.0% | |
| GGAAATAGAGGAAGACAAAT+TGG | + | chr5.1:12166457-12166476 | MS.gene010551:CDS | 35.0% | |
| GGAAATCCTTACTATGCAAA+TGG | + | chr5.1:12163579-12163598 | MS.gene010551:CDS | 35.0% | |
| GGATTAAATTTGGTCCTTTG+TGG | - | chr5.1:12165465-12165484 | None:intergenic | 35.0% | |
| GTCCCTATGTTGTTAATAGT+AGG | - | chr5.1:12165486-12165505 | None:intergenic | 35.0% | |
| TATAGCATGACCTTGAAATC+AGG | - | chr5.1:12165307-12165326 | None:intergenic | 35.0% | |
| TCTTAACCATCCTTGAGAAA+GGG | + | chr5.1:12163846-12163865 | MS.gene010551:intron | 35.0% | |
| TGGACAAGTTTCACAAATCA+CGG | + | chr5.1:12165280-12165299 | MS.gene010551:intron | 35.0% | |
| TTGATTATAGGGTTGGATCA+CGG | + | chr5.1:12165359-12165378 | MS.gene010551:intron | 35.0% | |
| TTTAGGAACCCTGTTGTTAA+AGG | + | chr5.1:12164212-12164231 | MS.gene010551:CDS | 35.0% | |
| ! | AACAGGTACAACAGTTTTAC+TGG | + | chr5.1:12164743-12164762 | MS.gene010551:CDS | 35.0% |
| ! | AACTGGGCTAGAAGTAATAA+TGG | + | chr5.1:12164161-12164180 | MS.gene010551:CDS | 35.0% |
| ! | AGCTTGCATTTTTGAACAAC+TGG | + | chr5.1:12166053-12166072 | MS.gene010551:CDS | 35.0% |
| ! | GAACTTCTTTTGTCTTTGCT+TGG | + | chr5.1:12164270-12164289 | MS.gene010551:intron | 35.0% |
| ! | GTTTTTCCTTTTGGCCATTT+TGG | + | chr5.1:12163473-12163492 | MS.gene010551:CDS | 35.0% |
| !! | CAAATGGCTTTAATGCTTAC+TGG | + | chr5.1:12163595-12163614 | MS.gene010551:CDS | 35.0% |
| !! | TCTATGTTGGTTGGTTTGAA+GGG | + | chr5.1:12164038-12164057 | MS.gene010551:intron | 35.0% |
| !! | TTCTATGTTGGTTGGTTTGA+AGG | + | chr5.1:12164037-12164056 | MS.gene010551:intron | 35.0% |
| AGATATATGCGTCTGCGAAA+AGG | + | chr5.1:12166209-12166228 | MS.gene010551:CDS | 40.0% | |
| AGTCCTTTGCAATATTCTCC+TGG | + | chr5.1:12163735-12163754 | MS.gene010551:CDS | 40.0% | |
| ATATATGCGTCTGCGAAAAG+GGG | + | chr5.1:12166211-12166230 | MS.gene010551:CDS | 40.0% | |
| ATGATCCAACAATCATGGCA+TGG | + | chr5.1:12164780-12164799 | MS.gene010551:CDS | 40.0% | |
| ATGGACAATCAACACCACAA+AGG | + | chr5.1:12165448-12165467 | MS.gene010551:CDS | 40.0% | |
| CAACAAGTGATTCCTGTCAA+TGG | - | chr5.1:12165406-12165425 | None:intergenic | 40.0% | |
| CATCTATCACTGTCAATGAG+AGG | - | chr5.1:12164956-12164975 | None:intergenic | 40.0% | |
| CATTGACAGGAATCACTTGT+TGG | + | chr5.1:12165404-12165423 | MS.gene010551:CDS | 40.0% | |
| GAAGAAGCAGTATGTGAACT+GGG | + | chr5.1:12164145-12164164 | MS.gene010551:CDS | 40.0% | |
| GAATTTGACAGAATCATGGC+TGG | - | chr5.1:12165912-12165931 | None:intergenic | 40.0% | |
| GACTTACTGTTGCTAGAACT+TGG | + | chr5.1:12163691-12163710 | MS.gene010551:CDS | 40.0% | |
| GAGCTAGATTTAACGGAAGA+AGG | + | chr5.1:12166419-12166438 | MS.gene010551:CDS | 40.0% | |
| GATATATGCGTCTGCGAAAA+GGG | + | chr5.1:12166210-12166229 | MS.gene010551:CDS | 40.0% | |
| GCAACTTCTTACAGAAGGAA+TGG | + | chr5.1:12166261-12166280 | MS.gene010551:CDS | 40.0% | |
| GGACAAGTTTCACAAATCAC+GGG | + | chr5.1:12165281-12165300 | MS.gene010551:intron | 40.0% | |
| GTCTTAACCATCCTTGAGAA+AGG | + | chr5.1:12163845-12163864 | MS.gene010551:intron | 40.0% | |
| TGACGAGTTTCACGAAATCA+CGG | + | chr5.1:12165825-12165844 | MS.gene010551:intron | 40.0% | |
| TGATCCAACAATCATGGCAT+GGG | + | chr5.1:12164781-12164800 | MS.gene010551:CDS | 40.0% | |
| TGATCCATCTCAGAGATTCA+AGG | + | chr5.1:12163635-12163654 | MS.gene010551:CDS | 40.0% | |
| TTAGAGCATATTGTGCGTCT+AGG | - | chr5.1:12166093-12166112 | None:intergenic | 40.0% | |
| TTCATTGTTATCCCGACCAA+TGG | + | chr5.1:12165553-12165572 | MS.gene010551:CDS | 40.0% | |
| TTCTAGCAACAGTAAGTCCA+TGG | - | chr5.1:12163689-12163708 | None:intergenic | 40.0% | |
| TTCTGGCAACTTCTTACAGA+AGG | + | chr5.1:12166256-12166275 | MS.gene010551:CDS | 40.0% | |
| TTGGTCGGGATAACAATGAA+CGG | - | chr5.1:12165553-12165572 | None:intergenic | 40.0% | |
| ! | ACACTCTTGATGGACCAAAA+TGG | - | chr5.1:12163490-12163509 | None:intergenic | 40.0% |
| ! | ATATCTGAGGCTAGAAAGCA+TGG | + | chr5.1:12164074-12164093 | MS.gene010551:CDS | 40.0% |
| ! | GAAACCTTGAATCTCTGAGA+TGG | - | chr5.1:12163642-12163661 | None:intergenic | 40.0% |
| ! | TGAGAGGAATAAAGGTGTAG+TGG | - | chr5.1:12164940-12164959 | None:intergenic | 40.0% |
| !! | CTATGTTGGTTGGTTTGAAG+GGG | + | chr5.1:12164039-12164058 | MS.gene010551:intron | 40.0% |
| !!! | GATGGTTTTGTGAGAACAAG+AGG | + | chr5.1:12163537-12163556 | MS.gene010551:CDS | 40.0% |
| AAACAGTCAGAGTCAGCTCA+TGG | - | chr5.1:12165334-12165353 | None:intergenic | 45.0% | |
| AAATCACGGGCCTGATTTCA+AGG | + | chr5.1:12165294-12165313 | MS.gene010551:intron | 45.0% | |
| AATGTAGAAGCTGCTGGTGA+TGG | + | chr5.1:12163519-12163538 | MS.gene010551:CDS | 45.0% | |
| ACCTGAATAGTCCTTCCTGA+AGG | - | chr5.1:12164839-12164858 | None:intergenic | 45.0% | |
| AGAACTTGGGCTTTCAGTGA+TGG | + | chr5.1:12163705-12163724 | MS.gene010551:CDS | 45.0% | |
| AGATCGCTAATGAACGACGA+TGG | + | chr5.1:12166392-12166411 | MS.gene010551:CDS | 45.0% | |
| AGTTTCACGAAATCACGGTG+TGG | + | chr5.1:12165830-12165849 | MS.gene010551:intron | 45.0% | |
| ATAGGGTTGGATCACGGAAA+TGG | + | chr5.1:12165365-12165384 | MS.gene010551:intron | 45.0% | |
| ATTACGAGGACCCTTTCTCA+AGG | - | chr5.1:12163859-12163878 | None:intergenic | 45.0% | |
| ATTGCCAACAATCGAATCCC+AGG | + | chr5.1:12165513-12165532 | MS.gene010551:CDS | 45.0% | |
| CTTTGGTGAAGTCCATTGAC+AGG | + | chr5.1:12165391-12165410 | MS.gene010551:CDS | 45.0% | |
| GAATCTTTCGACGATGGCTA+TGG | + | chr5.1:12166283-12166302 | MS.gene010551:CDS | 45.0% | |
| GATCACGGAAATGGCTTCTT+TGG | + | chr5.1:12165374-12165393 | MS.gene010551:CDS | 45.0% | |
| GATGGACCAAAATGGCCAAA+AGG | - | chr5.1:12163482-12163501 | None:intergenic | 45.0% | |
| GATGGCTATGGAATATCGCT+TGG | + | chr5.1:12166295-12166314 | MS.gene010551:CDS | 45.0% | |
| GGAAGAAGCAGTATGTGAAC+TGG | + | chr5.1:12164144-12164163 | MS.gene010551:CDS | 45.0% | |
| GGAATGGAATCTTTCGACGA+TGG | + | chr5.1:12166277-12166296 | MS.gene010551:CDS | 45.0% | |
| GGGAGCTTATGAATGAACCT+AGG | + | chr5.1:12164801-12164820 | MS.gene010551:CDS | 45.0% | |
| TACCTGTTGAGAACAGTCTG+TGG | - | chr5.1:12164731-12164750 | None:intergenic | 45.0% | |
| TCCTTCAGGAAGGACTATTC+AGG | + | chr5.1:12164835-12164854 | MS.gene010551:CDS | 45.0% | |
| TGTTGGAAGCTGGACTTGAA+GGG | + | chr5.1:12165421-12165440 | MS.gene010551:CDS | 45.0% | |
| TTCCACAGACTGTTCTCAAC+AGG | + | chr5.1:12164726-12164745 | MS.gene010551:intron | 45.0% | |
| TTGTTGGAAGCTGGACTTGA+AGG | + | chr5.1:12165420-12165439 | MS.gene010551:CDS | 45.0% | |
| ! | AGGAATCACTTGTTGGAAGC+TGG | + | chr5.1:12165411-12165430 | MS.gene010551:CDS | 45.0% |
| ! | GCTGGACTTGAAGGGTTTTA+TGG | + | chr5.1:12165429-12165448 | MS.gene010551:CDS | 45.0% |
| ACGGTTGCAAAATCGATGCC+TGG | - | chr5.1:12165534-12165553 | None:intergenic | 50.0% | |
| ACTTGGGCTTTCAGTGATGG+TGG | + | chr5.1:12163708-12163727 | MS.gene010551:CDS | 50.0% | |
| AGCTCCCATGCCATGATTGT+TGG | - | chr5.1:12164788-12164807 | None:intergenic | 50.0% | |
| AGGTGTACGTCAGATCCTTC+AGG | + | chr5.1:12164821-12164840 | MS.gene010551:CDS | 50.0% | |
| CGGTTGCAAAATCGATGCCT+GGG | - | chr5.1:12165533-12165552 | None:intergenic | 50.0% | |
| CTTAAACTTCCGGTTCCCTG+CGG | + | chr5.1:12163960-12163979 | MS.gene010551:intron | 50.0% | |
| GAACAATTTCCGCAGGGAAC+CGG | - | chr5.1:12163972-12163991 | None:intergenic | 50.0% | |
| GAACAGTCTGTGGAAGTTCC+AGG | - | chr5.1:12164721-12164740 | None:intergenic | 50.0% | |
| GAAGGATCTGACGTACACCT+AGG | - | chr5.1:12164821-12164840 | None:intergenic | 50.0% | |
| GATGCCTGGGATTCGATTGT+TGG | - | chr5.1:12165520-12165539 | None:intergenic | 50.0% | |
| GTACGTCAGATCCTTCAGGA+AGG | + | chr5.1:12164825-12164844 | MS.gene010551:CDS | 50.0% | |
| TTCCGTGAAGCAACAAGCCA+TGG | + | chr5.1:12163669-12163688 | MS.gene010551:CDS | 50.0% | |
| !! | GTCCATGGCTTGTTGCTTCA+CGG | - | chr5.1:12163674-12163693 | None:intergenic | 50.0% |
| !! | GTTGGTTGGTTTGAAGGGGT+TGG | + | chr5.1:12164043-12164062 | MS.gene010551:intron | 50.0% |
| CAGAACAATGCTCCACTCGC+TGG | - | chr5.1:12166241-12166260 | None:intergenic | 55.0% | |
| CGAGGACCCTTTCTCAAGGA+TGG | - | chr5.1:12163855-12163874 | None:intergenic | 55.0% | |
| TATGCGTCTGCGAAAAGGGG+AGG | + | chr5.1:12166214-12166233 | MS.gene010551:CDS | 55.0% | |
| ! | TCGCGCGTTGGTGGAAATAG+AGG | + | chr5.1:12166445-12166464 | MS.gene010551:CDS | 55.0% |
| !! | CAGCGAGTGGAGCATTGTTC+TGG | + | chr5.1:12166239-12166258 | MS.gene010551:CDS | 55.0% |
| AAAAGGGGAGGTCCAGCGAG+TGG | + | chr5.1:12166226-12166245 | MS.gene010551:CDS | 60.0% | |
| AGAAGGTCTTCGCGCGTTGG+TGG | + | chr5.1:12166436-12166455 | MS.gene010551:CDS | 60.0% | |
| GGAAGAAGGTCTTCGCGCGT+TGG | + | chr5.1:12166433-12166452 | MS.gene010551:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 12163453 | 12166486 | 12163453 | ID=MS.gene010551 |
| chr5.1 | mRNA | 12163453 | 12166486 | 12163453 | ID=MS.gene010551.t1;Parent=MS.gene010551 |
| chr5.1 | exon | 12163453 | 12163782 | 12163453 | ID=MS.gene010551.t1.exon1;Parent=MS.gene010551.t1 |
| chr5.1 | CDS | 12163453 | 12163782 | 12163453 | ID=cds.MS.gene010551.t1;Parent=MS.gene010551.t1 |
| chr5.1 | exon | 12164059 | 12164256 | 12164059 | ID=MS.gene010551.t1.exon2;Parent=MS.gene010551.t1 |
| chr5.1 | CDS | 12164059 | 12164256 | 12164059 | ID=cds.MS.gene010551.t1;Parent=MS.gene010551.t1 |
| chr5.1 | exon | 12164734 | 12164856 | 12164734 | ID=MS.gene010551.t1.exon3;Parent=MS.gene010551.t1 |
| chr5.1 | CDS | 12164734 | 12164856 | 12164734 | ID=cds.MS.gene010551.t1;Parent=MS.gene010551.t1 |
| chr5.1 | exon | 12165369 | 12165574 | 12165369 | ID=MS.gene010551.t1.exon4;Parent=MS.gene010551.t1 |
| chr5.1 | CDS | 12165369 | 12165574 | 12165369 | ID=cds.MS.gene010551.t1;Parent=MS.gene010551.t1 |
| chr5.1 | exon | 12166027 | 12166486 | 12166027 | ID=MS.gene010551.t1.exon5;Parent=MS.gene010551.t1 |
| chr5.1 | CDS | 12166027 | 12166486 | 12166027 | ID=cds.MS.gene010551.t1;Parent=MS.gene010551.t1 |
| Gene Sequence |
| Protein sequence |
