Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010593.t1 | XP_013453547.1 | 98.9 | 190 | 2 | 0 | 1 | 190 | 1 | 190 | 8.00E-104 | 386.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010593.t1 | C0SVM5 | 60.1 | 183 | 45 | 3 | 1 | 183 | 1 | 155 | 7.6e-55 | 214.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010593.t1 | A0A072UCQ4 | 98.9 | 190 | 2 | 0 | 1 | 190 | 1 | 190 | 5.7e-104 | 386.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene010593.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64738 | MS.gene010593 | PPI |
| MS.gene68034 | MS.gene010593 | PPI |
| MS.gene59440 | MS.gene010593 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010593.t1 | MTR_5g021580 | 98.947 | 190 | 2 | 0 | 1 | 190 | 1 | 190 | 6.35e-141 | 390 |
| MS.gene010593.t1 | MTR_5g021580 | 98.913 | 184 | 2 | 0 | 1 | 184 | 1 | 184 | 7.62e-136 | 377 |
| MS.gene010593.t1 | MTR_2g073370 | 50.000 | 104 | 49 | 2 | 1 | 101 | 1 | 104 | 4.84e-27 | 104 |
| MS.gene010593.t1 | MTR_4g067320 | 42.537 | 134 | 71 | 4 | 1 | 131 | 1 | 131 | 4.66e-25 | 97.8 |
| MS.gene010593.t1 | MTR_4g067320 | 42.537 | 134 | 71 | 4 | 1 | 131 | 1 | 131 | 4.92e-25 | 97.8 |
| MS.gene010593.t1 | MTR_2g099010 | 47.959 | 98 | 48 | 2 | 1 | 95 | 1 | 98 | 1.11e-23 | 94.4 |
| MS.gene010593.t1 | MTR_2g099010 | 47.959 | 98 | 48 | 2 | 1 | 95 | 1 | 98 | 1.14e-23 | 94.4 |
| MS.gene010593.t1 | MTR_3g117320 | 31.953 | 169 | 96 | 5 | 1 | 165 | 1 | 154 | 2.71e-22 | 90.1 |
| MS.gene010593.t1 | MTR_3g113070 | 40.351 | 114 | 63 | 2 | 1 | 109 | 1 | 114 | 9.74e-22 | 88.6 |
| MS.gene010593.t1 | MTR_4g071200 | 42.000 | 100 | 54 | 2 | 1 | 96 | 1 | 100 | 2.24e-21 | 87.8 |
| MS.gene010593.t1 | MTR_3g105710 | 50.602 | 83 | 33 | 1 | 4 | 86 | 5 | 79 | 6.24e-20 | 85.1 |
| MS.gene010593.t1 | MTR_1g023260 | 44.000 | 100 | 52 | 2 | 1 | 96 | 1 | 100 | 1.16e-19 | 84.3 |
| MS.gene010593.t1 | MTR_1g023260 | 33.333 | 171 | 100 | 4 | 1 | 167 | 1 | 161 | 1.38e-19 | 82.4 |
| MS.gene010593.t1 | MTR_1g013450 | 43.478 | 92 | 42 | 2 | 4 | 93 | 5 | 88 | 6.74e-18 | 80.1 |
| MS.gene010593.t1 | MTR_7g018170 | 47.500 | 80 | 34 | 1 | 5 | 84 | 26 | 97 | 4.38e-17 | 78.2 |
| MS.gene010593.t1 | MTR_4g128930 | 41.975 | 81 | 39 | 1 | 4 | 84 | 21 | 93 | 1.70e-15 | 73.9 |
| MS.gene010593.t1 | MTR_7g108150 | 38.750 | 80 | 41 | 1 | 5 | 84 | 20 | 91 | 7.92e-13 | 66.2 |
| MS.gene010593.t1 | MTR_3g082630 | 38.095 | 84 | 44 | 1 | 1 | 84 | 1 | 76 | 5.62e-11 | 60.8 |
| MS.gene010593.t1 | MTR_5g069480 | 36.905 | 84 | 45 | 1 | 1 | 84 | 1 | 76 | 7.12e-11 | 60.5 |
| MS.gene010593.t1 | MTR_5g069480 | 36.905 | 84 | 45 | 1 | 1 | 84 | 1 | 76 | 8.88e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010593.t1 | AT4G38960 | 60.109 | 183 | 45 | 3 | 1 | 183 | 1 | 155 | 1.68e-72 | 217 |
| MS.gene010593.t1 | AT4G38960 | 60.109 | 183 | 45 | 3 | 1 | 183 | 1 | 155 | 1.68e-72 | 217 |
| MS.gene010593.t1 | AT2G21320 | 59.239 | 184 | 48 | 3 | 1 | 184 | 1 | 157 | 9.59e-69 | 207 |
| MS.gene010593.t1 | AT4G38960 | 48.673 | 226 | 45 | 4 | 1 | 183 | 1 | 198 | 3.39e-64 | 197 |
| MS.gene010593.t1 | AT4G38960 | 54.605 | 152 | 41 | 3 | 34 | 185 | 1 | 124 | 3.28e-51 | 162 |
| MS.gene010593.t1 | AT4G38960 | 54.667 | 150 | 40 | 3 | 34 | 183 | 1 | 122 | 1.87e-50 | 160 |
| MS.gene010593.t1 | AT4G38960 | 54.667 | 150 | 40 | 3 | 34 | 183 | 1 | 122 | 1.87e-50 | 160 |
| MS.gene010593.t1 | AT1G78600 | 50.000 | 104 | 49 | 2 | 1 | 101 | 1 | 104 | 5.45e-28 | 106 |
| MS.gene010593.t1 | AT1G78600 | 46.667 | 120 | 59 | 3 | 1 | 115 | 1 | 120 | 7.33e-28 | 107 |
| MS.gene010593.t1 | AT1G06040 | 50.000 | 98 | 46 | 2 | 1 | 95 | 1 | 98 | 2.22e-24 | 94.4 |
| MS.gene010593.t1 | AT1G06040 | 50.000 | 98 | 46 | 2 | 1 | 95 | 1 | 98 | 4.88e-24 | 95.5 |
| MS.gene010593.t1 | AT1G75540 | 43.137 | 102 | 52 | 2 | 1 | 96 | 1 | 102 | 1.31e-22 | 93.2 |
| MS.gene010593.t1 | AT4G39070 | 44.000 | 100 | 52 | 2 | 1 | 96 | 1 | 100 | 2.50e-22 | 90.9 |
| MS.gene010593.t1 | AT2G31380 | 47.115 | 104 | 52 | 2 | 1 | 101 | 1 | 104 | 3.03e-21 | 87.8 |
| MS.gene010593.t1 | AT2G24790 | 36.416 | 173 | 88 | 9 | 4 | 166 | 7 | 167 | 2.97e-20 | 84.7 |
| MS.gene010593.t1 | AT2G24790 | 36.416 | 173 | 88 | 9 | 4 | 166 | 7 | 167 | 1.28e-19 | 84.3 |
| MS.gene010593.t1 | AT4G10240 | 42.718 | 103 | 50 | 2 | 1 | 96 | 1 | 101 | 7.39e-19 | 79.7 |
| MS.gene010593.t1 | AT5G15850 | 47.253 | 91 | 38 | 2 | 5 | 93 | 12 | 94 | 7.44e-19 | 83.2 |
| MS.gene010593.t1 | AT5G24930 | 48.148 | 81 | 34 | 1 | 4 | 84 | 5 | 77 | 7.61e-19 | 83.2 |
| MS.gene010593.t1 | AT2G47890 | 42.222 | 90 | 44 | 1 | 4 | 93 | 12 | 93 | 4.76e-18 | 80.5 |
| MS.gene010593.t1 | AT2G47890 | 42.222 | 90 | 44 | 1 | 4 | 93 | 12 | 93 | 4.79e-18 | 80.1 |
| MS.gene010593.t1 | AT3G02380 | 46.154 | 91 | 39 | 2 | 5 | 93 | 16 | 98 | 5.22e-18 | 80.5 |
| MS.gene010593.t1 | AT2G47890 | 42.222 | 90 | 44 | 1 | 4 | 93 | 12 | 93 | 1.32e-17 | 78.2 |
| MS.gene010593.t1 | AT5G15840 | 50.000 | 80 | 32 | 1 | 5 | 84 | 20 | 91 | 1.87e-17 | 79.3 |
| MS.gene010593.t1 | AT5G15840 | 50.000 | 80 | 32 | 1 | 5 | 84 | 20 | 91 | 2.75e-17 | 77.8 |
| MS.gene010593.t1 | AT5G57660 | 41.250 | 80 | 35 | 2 | 5 | 84 | 22 | 89 | 6.32e-13 | 66.2 |
| MS.gene010593.t1 | AT1G68190 | 38.710 | 93 | 49 | 1 | 1 | 93 | 10 | 94 | 1.44e-12 | 65.5 |
| MS.gene010593.t1 | AT1G68190 | 38.710 | 93 | 49 | 1 | 1 | 93 | 10 | 94 | 1.44e-12 | 65.5 |
| MS.gene010593.t1 | AT1G68190 | 38.710 | 93 | 49 | 1 | 1 | 93 | 39 | 123 | 1.78e-12 | 65.1 |
| MS.gene010593.t1 | AT1G28050 | 40.964 | 83 | 41 | 1 | 2 | 84 | 6 | 80 | 3.42e-12 | 64.3 |
Find 40 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCATGTATTCTGTTGTT+AGG | 0.314824 | 5.1:+12784187 | None:intergenic |
| CTCTTTGTTTCATAGTTTCC+AGG | 0.319859 | 5.1:-12784409 | MS.gene010593:intron |
| AATAATCAGGTTAGAGTTCA+TGG | 0.327088 | 5.1:-12784157 | MS.gene010593:CDS |
| AGTTAGCTAGTAGACATGTT+AGG | 0.334611 | 5.1:-12785004 | MS.gene010593:CDS |
| ATGGAAGATATCTTCTCTTT+AGG | 0.360799 | 5.1:-12784753 | MS.gene010593:CDS |
| TTAGAATTCCCATCAGCATT+AGG | 0.367971 | 5.1:+12784244 | None:intergenic |
| TGAACATGCATCAAATAATC+AGG | 0.417562 | 5.1:-12784170 | MS.gene010593:CDS |
| GCCGGGTTGTCTGCATTACT+AGG | 0.455216 | 5.1:+12784379 | None:intergenic |
| GAGAGAAGCAACAAAATCAT+AGG | 0.461871 | 5.1:-12784291 | MS.gene010593:CDS |
| GGATCTAGAGGTTGTGAAGC+CGG | 0.462473 | 5.1:+12784361 | None:intergenic |
| TCAGCATTAGGTTCTGAAGT+TGG | 0.480629 | 5.1:+12784256 | None:intergenic |
| TCGCACCGCGGCACGTCACT+CGG | 0.487301 | 5.1:+12784966 | None:intergenic |
| CATATCACATTGCAAACAAA+GGG | 0.494623 | 5.1:+12784804 | None:intergenic |
| GTTAGCTAGTAGACATGTTA+GGG | 0.499857 | 5.1:-12785003 | MS.gene010593:CDS |
| TTAGGTTCTGAAGTTGGAAC+CGG | 0.500416 | 5.1:+12784262 | None:intergenic |
| GCATTACTAGGTTTATCGCC+TGG | 0.511209 | 5.1:+12784391 | None:intergenic |
| TGCTGATGGGAATTCTAAGA+TGG | 0.518367 | 5.1:-12784239 | MS.gene010593:CDS |
| GATCCAGGTGATATTAAAAG+AGG | 0.532561 | 5.1:-12784343 | MS.gene010593:CDS |
| GATCTAGAGGTTGTGAAGCC+GGG | 0.534120 | 5.1:+12784362 | None:intergenic |
| TCATATCACATTGCAAACAA+AGG | 0.534969 | 5.1:+12784803 | None:intergenic |
| AGTTGTCTGTGCTGCTGATG+AGG | 0.538413 | 5.1:-12785555 | MS.gene010593:CDS |
| TTAATATCACCTGGATCTAG+AGG | 0.539036 | 5.1:+12784349 | None:intergenic |
| GCTTCACAACCTCTAGATCC+AGG | 0.543997 | 5.1:-12784358 | MS.gene010593:CDS |
| TCTCTTTAGGCAAAGAGTTG+AGG | 0.545750 | 5.1:-12784740 | MS.gene010593:intron |
| TTCTTCTATTGCGAAACAGA+TGG | 0.548785 | 5.1:-12784832 | MS.gene010593:CDS |
| ACTTCAGAACCTAATGCTGA+TGG | 0.548946 | 5.1:-12784253 | MS.gene010593:CDS |
| GCTAGTAGACATGTTAGGGT+TGG | 0.553453 | 5.1:-12784999 | MS.gene010593:CDS |
| ACCTAGTAATGCAGACAACC+CGG | 0.558690 | 5.1:-12784380 | MS.gene010593:CDS |
| ACAAAATCATAGGATGCCTC+CGG | 0.578363 | 5.1:-12784281 | MS.gene010593:CDS |
| ATAATCAGGTTAGAGTTCAT+GGG | 0.583574 | 5.1:-12784156 | MS.gene010593:CDS |
| CAAGTCCGAGTGACGTGCCG+CGG | 0.583612 | 5.1:-12784971 | MS.gene010593:CDS |
| GTTGGTGGTAAAAGAATGCA+TGG | 0.587301 | 5.1:-12784772 | MS.gene010593:CDS |
| CTTCAGAACCTAATGCTGAT+GGG | 0.588602 | 5.1:-12784252 | MS.gene010593:CDS |
| CTGTCGTGCTTGTGATGAGA+AGG | 0.598560 | 5.1:-12785525 | MS.gene010593:intron |
| GGTTCTGAAGTTGGAACCGG+AGG | 0.621508 | 5.1:+12784265 | None:intergenic |
| GACATATGTGAGAATGCCCC+TGG | 0.645262 | 5.1:-12784945 | MS.gene010593:intron |
| GATATGATAGTTCATGTTGG+TGG | 0.666400 | 5.1:-12784787 | MS.gene010593:CDS |
| TGTGATATGATAGTTCATGT+TGG | 0.669655 | 5.1:-12784790 | MS.gene010593:CDS |
| AGCAGCACAGACAACTATAG+CGG | 0.689042 | 5.1:+12785562 | None:intergenic |
| TTCTCACATATGTCGCACCG+CGG | 0.743597 | 5.1:+12784954 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCCAATTATAAAAAATTGA+TGG | + | chr5.1:12784316-12784335 | None:intergenic | 15.0% |
| !!! | ATAATAATTTTGATACATTG+AGG | + | chr5.1:12785119-12785138 | None:intergenic | 15.0% |
| !!! | ATTTGATTTGATATTTTTTG+TGG | - | chr5.1:12784487-12784506 | MS.gene010593:intron | 15.0% |
| !!! | TAATAATTTTGATACATTGA+GGG | + | chr5.1:12785118-12785137 | None:intergenic | 15.0% |
| !! | GATTATACTTAAAACTAACT+TGG | + | chr5.1:12784626-12784645 | None:intergenic | 20.0% |
| !! | TTGTGTAAATTCAAAATCTA+AGG | - | chr5.1:12784513-12784532 | MS.gene010593:intron | 20.0% |
| !!! | AATTCAAGACTAATTCATTT+TGG | + | chr5.1:12785048-12785067 | None:intergenic | 20.0% |
| !!! | AGTTAGTTTTAAGTATAATC+TGG | - | chr5.1:12784626-12784645 | MS.gene010593:intron | 20.0% |
| !!! | GACCATCAATTTTTTATAAT+TGG | - | chr5.1:12784311-12784330 | MS.gene010593:CDS | 20.0% |
| !!! | TTTTAAGTATAATCTGGTAT+TGG | - | chr5.1:12784632-12784651 | MS.gene010593:intron | 20.0% |
| ! | GGTATTATACATACATTTGA+AGG | + | chr5.1:12785318-12785337 | None:intergenic | 25.0% |
| ! | TTAACCTAATCCAACATAAA+TGG | + | chr5.1:12784414-12784433 | None:intergenic | 25.0% |
| ! | TTATGAAACTAAATTGCAAG+TGG | + | chr5.1:12784450-12784469 | None:intergenic | 25.0% |
| ! | TTCTTTAAACAAAATCGAGA+AGG | + | chr5.1:12784601-12784620 | None:intergenic | 25.0% |
| !! | GACTAATTCATTTTGGATAA+AGG | + | chr5.1:12785041-12785060 | None:intergenic | 25.0% |
| !!! | AATGACGATTTTAGCTTATA+AGG | + | chr5.1:12784564-12784583 | None:intergenic | 25.0% |
| !!! | TATCTTTTGTTAGTCACTTT+CGG | - | chr5.1:12785188-12785207 | MS.gene010593:intron | 25.0% |
| !!! | TTGAAATTTTGATACGTTCA+GGG | - | chr5.1:12785219-12785238 | MS.gene010593:intron | 25.0% |
| !!! | TTTGAAATTTTGATACGTTC+AGG | - | chr5.1:12785218-12785237 | MS.gene010593:intron | 25.0% |
| AAAAGAAGAAACTTCTTACC+AGG | + | chr5.1:12784822-12784841 | None:intergenic | 30.0% | |
| AAAGAAGAAACTTCTTACCA+GGG | + | chr5.1:12784821-12784840 | None:intergenic | 30.0% | |
| AATAATCAGGTTAGAGTTCA+TGG | - | chr5.1:12785589-12785608 | MS.gene010593:CDS | 30.0% | |
| ACTAACAAAAGATACATCTG+AGG | + | chr5.1:12785182-12785201 | None:intergenic | 30.0% | |
| ATAATCAGGTTAGAGTTCAT+GGG | - | chr5.1:12785590-12785609 | MS.gene010593:CDS | 30.0% | |
| ATGGAAGATATCTTCTCTTT+AGG | - | chr5.1:12784993-12785012 | MS.gene010593:CDS | 30.0% | |
| CATATCACATTGCAAACAAA+GGG | + | chr5.1:12784945-12784964 | None:intergenic | 30.0% | |
| CCACTTCCTAAACAAAAAAT+GGG | - | chr5.1:12785433-12785452 | MS.gene010593:intron | 30.0% | |
| CTTATAAGGTCAAACTCTTA+CGG | + | chr5.1:12784550-12784569 | None:intergenic | 30.0% | |
| GACTAATAAAAGACACATTC+AGG | + | chr5.1:12785151-12785170 | None:intergenic | 30.0% | |
| GATTAGGTTAAAGATTGGAT+TGG | - | chr5.1:12784423-12784442 | MS.gene010593:intron | 30.0% | |
| TCATATCACATTGCAAACAA+AGG | + | chr5.1:12784946-12784965 | None:intergenic | 30.0% | |
| TCCACTTCCTAAACAAAAAA+TGG | - | chr5.1:12785432-12785451 | MS.gene010593:intron | 30.0% | |
| TGAACATGCATCAAATAATC+AGG | - | chr5.1:12785576-12785595 | MS.gene010593:CDS | 30.0% | |
| TGTGATATGATAGTTCATGT+TGG | - | chr5.1:12784956-12784975 | MS.gene010593:CDS | 30.0% | |
| TGTTCATGTATTCTGTTGTT+AGG | + | chr5.1:12785562-12785581 | None:intergenic | 30.0% | |
| TTGAATGAGTCCATTTATGT+TGG | - | chr5.1:12784401-12784420 | MS.gene010593:intron | 30.0% | |
| ! | GTGTCTTTTATTAGTCAGTT+TGG | - | chr5.1:12785155-12785174 | MS.gene010593:intron | 30.0% |
| ! | TGTTGGATTAGGTTAAAGAT+TGG | - | chr5.1:12784418-12784437 | MS.gene010593:intron | 30.0% |
| ! | TTTTAATCCTTGAATGTGTG+AGG | - | chr5.1:12785079-12785098 | MS.gene010593:intron | 30.0% |
| !! | ATCTTTTGTTAGTCACTTTC+GGG | - | chr5.1:12785189-12785208 | MS.gene010593:intron | 30.0% |
| !! | TGGAATTTGATTGATTTTCC+TGG | - | chr5.1:12784652-12784671 | MS.gene010593:intron | 30.0% |
| !!! | TTCTCTCCCATTTTTTGTTT+AGG | + | chr5.1:12785442-12785461 | None:intergenic | 30.0% |
| AAGAAGAAACTTCTTACCAG+GGG | + | chr5.1:12784820-12784839 | None:intergenic | 35.0% | |
| AGTTAGCTAGTAGACATGTT+AGG | - | chr5.1:12784742-12784761 | MS.gene010593:CDS | 35.0% | |
| ATCAGAAGAACAACACTACA+AGG | + | chr5.1:12784848-12784867 | None:intergenic | 35.0% | |
| CTGGAAACTATGAAACAAAG+AGG | + | chr5.1:12785339-12785358 | None:intergenic | 35.0% | |
| GACATCGTTTCACACATTTA+GGG | - | chr5.1:12785250-12785269 | MS.gene010593:intron | 35.0% | |
| GAGAGAAGCAACAAAATCAT+AGG | - | chr5.1:12785455-12785474 | MS.gene010593:intron | 35.0% | |
| GAGTCCATTTATGTTGGATT+AGG | - | chr5.1:12784407-12784426 | MS.gene010593:intron | 35.0% | |
| GATATGATAGTTCATGTTGG+TGG | - | chr5.1:12784959-12784978 | MS.gene010593:CDS | 35.0% | |
| GATCCAGGTGATATTAAAAG+AGG | - | chr5.1:12785403-12785422 | MS.gene010593:intron | 35.0% | |
| GGTCAATGTCTTTCAACTAA+TGG | - | chr5.1:12784673-12784692 | MS.gene010593:intron | 35.0% | |
| GTCTTTCAACTAATGGTTCA+AGG | - | chr5.1:12784680-12784699 | MS.gene010593:intron | 35.0% | |
| GTTAGCTAGTAGACATGTTA+GGG | - | chr5.1:12784743-12784762 | MS.gene010593:CDS | 35.0% | |
| TGACATCGTTTCACACATTT+AGG | - | chr5.1:12785249-12785268 | MS.gene010593:intron | 35.0% | |
| TTAATATCACCTGGATCTAG+AGG | + | chr5.1:12785400-12785419 | None:intergenic | 35.0% | |
| TTAGAATTCCCATCAGCATT+AGG | + | chr5.1:12785505-12785524 | None:intergenic | 35.0% | |
| TTAGTTGAAAGACATTGACC+AGG | + | chr5.1:12784673-12784692 | None:intergenic | 35.0% | |
| TTCTTCTATTGCGAAACAGA+TGG | - | chr5.1:12784914-12784933 | MS.gene010593:intron | 35.0% | |
| ! | CTCTTTGTTTCATAGTTTCC+AGG | - | chr5.1:12785337-12785356 | MS.gene010593:intron | 35.0% |
| ! | TGTCCTCTTTTAATATCACC+TGG | + | chr5.1:12785409-12785428 | None:intergenic | 35.0% |
| !! | TCTTTTGTTAGTCACTTTCG+GGG | - | chr5.1:12785190-12785209 | MS.gene010593:intron | 35.0% |
| !! | TTGCAACTTTTGGAAATTGC+AGG | - | chr5.1:12784704-12784723 | MS.gene010593:intron | 35.0% |
| !!! | CCCATTTTTTGTTTAGGAAG+TGG | + | chr5.1:12785436-12785455 | None:intergenic | 35.0% |
| ACAAAATCATAGGATGCCTC+CGG | - | chr5.1:12785465-12785484 | MS.gene010593:intron | 40.0% | |
| ACTTCAGAACCTAATGCTGA+TGG | - | chr5.1:12785493-12785512 | MS.gene010593:intron | 40.0% | |
| CTTCAGAACCTAATGCTGAT+GGG | - | chr5.1:12785494-12785513 | MS.gene010593:intron | 40.0% | |
| TCTCTTTAGGCAAAGAGTTG+AGG | - | chr5.1:12785006-12785025 | MS.gene010593:CDS | 40.0% | |
| ! | GGTTCAAGGTTTGCAACTTT+TGG | - | chr5.1:12784694-12784713 | MS.gene010593:intron | 40.0% |
| ! | TGCTGATGGGAATTCTAAGA+TGG | - | chr5.1:12785507-12785526 | MS.gene010593:intron | 40.0% |
| !! | GTTGGTGGTAAAAGAATGCA+TGG | - | chr5.1:12784974-12784993 | MS.gene010593:CDS | 40.0% |
| !! | TCAGCATTAGGTTCTGAAGT+TGG | + | chr5.1:12785493-12785512 | None:intergenic | 40.0% |
| !! | TTAGGTTCTGAAGTTGGAAC+CGG | + | chr5.1:12785487-12785506 | None:intergenic | 40.0% |
| ACCTAGTAATGCAGACAACC+CGG | - | chr5.1:12785366-12785385 | MS.gene010593:intron | 45.0% | |
| AGCAGCACAGACAACTATAG+CGG | + | chr5.1:12784187-12784206 | None:intergenic | 45.0% | |
| GCATTACTAGGTTTATCGCC+TGG | + | chr5.1:12785358-12785377 | None:intergenic | 45.0% | |
| GCTAGTAGACATGTTAGGGT+TGG | - | chr5.1:12784747-12784766 | MS.gene010593:CDS | 45.0% | |
| CTGTCGTGCTTGTGATGAGA+AGG | - | chr5.1:12784221-12784240 | MS.gene010593:CDS | 50.0% | |
| GACATATGTGAGAATGCCCC+TGG | - | chr5.1:12784801-12784820 | MS.gene010593:CDS | 50.0% | |
| GATCTAGAGGTTGTGAAGCC+GGG | + | chr5.1:12785387-12785406 | None:intergenic | 50.0% | |
| GCTTCACAACCTCTAGATCC+AGG | - | chr5.1:12785388-12785407 | MS.gene010593:intron | 50.0% | |
| GGATCTAGAGGTTGTGAAGC+CGG | + | chr5.1:12785388-12785407 | None:intergenic | 50.0% | |
| GTGACTGCCTCACACATTCA+AGG | + | chr5.1:12785089-12785108 | None:intergenic | 50.0% | |
| TTCTCACATATGTCGCACCG+CGG | + | chr5.1:12784795-12784814 | None:intergenic | 50.0% | |
| ! | AGTTGTCTGTGCTGCTGATG+AGG | - | chr5.1:12784191-12784210 | MS.gene010593:CDS | 50.0% |
| GCCGGGTTGTCTGCATTACT+AGG | + | chr5.1:12785370-12785389 | None:intergenic | 55.0% | |
| !! | GGTTCTGAAGTTGGAACCGG+AGG | + | chr5.1:12785484-12785503 | None:intergenic | 55.0% |
| CAAGTCCGAGTGACGTGCCG+CGG | - | chr5.1:12784775-12784794 | MS.gene010593:CDS | 65.0% | |
| TCGCACCGCGGCACGTCACT+CGG | + | chr5.1:12784783-12784802 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 12784150 | 12785618 | 12784150 | ID=MS.gene010593 |
| chr5.1 | mRNA | 12784150 | 12785618 | 12784150 | ID=MS.gene010593.t1;Parent=MS.gene010593 |
| chr5.1 | exon | 12785526 | 12785618 | 12785526 | ID=MS.gene010593.t1.exon1;Parent=MS.gene010593.t1 |
| chr5.1 | CDS | 12785526 | 12785618 | 12785526 | ID=cds.MS.gene010593.t1;Parent=MS.gene010593.t1 |
| chr5.1 | exon | 12784946 | 12785042 | 12784946 | ID=MS.gene010593.t1.exon2;Parent=MS.gene010593.t1 |
| chr5.1 | CDS | 12784946 | 12785042 | 12784946 | ID=cds.MS.gene010593.t1;Parent=MS.gene010593.t1 |
| chr5.1 | exon | 12784741 | 12784856 | 12784741 | ID=MS.gene010593.t1.exon3;Parent=MS.gene010593.t1 |
| chr5.1 | CDS | 12784741 | 12784856 | 12784741 | ID=cds.MS.gene010593.t1;Parent=MS.gene010593.t1 |
| chr5.1 | exon | 12784150 | 12784416 | 12784150 | ID=MS.gene010593.t1.exon4;Parent=MS.gene010593.t1 |
| chr5.1 | CDS | 12784150 | 12784416 | 12784150 | ID=cds.MS.gene010593.t1;Parent=MS.gene010593.t1 |
| Gene Sequence |
| Protein sequence |
