Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59440.t1 | XP_013453547.1 | 100 | 190 | 0 | 0 | 1 | 190 | 1 | 190 | 1.50E-105 | 392.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59440.t1 | C0SVM5 | 61.2 | 183 | 43 | 3 | 1 | 183 | 1 | 155 | 1.1e-56 | 221.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59440.t1 | A0A072UCQ4 | 100.0 | 190 | 0 | 0 | 1 | 190 | 1 | 190 | 1.0e-105 | 392.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59440.t1 | TF | DBB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050702 | MS.gene59440 | 0.86664 | 2.46E-65 | -1.69E-46 |
| MS.gene052224 | MS.gene59440 | 0.854693 | 1.04E-61 | -1.69E-46 |
| MS.gene053401 | MS.gene59440 | -0.875587 | 2.74E-68 | -1.69E-46 |
| MS.gene056338 | MS.gene59440 | -0.835615 | 1.51E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64738 | MS.gene59440 | PPI |
| MS.gene59440 | MS.gene68034 | PPI |
| MS.gene59440 | MS.gene010593 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59440.t1 | MTR_5g021580 | 100.000 | 190 | 0 | 0 | 1 | 190 | 1 | 190 | 9.49e-143 | 395 |
| MS.gene59440.t1 | MTR_5g021580 | 100.000 | 184 | 0 | 0 | 1 | 184 | 1 | 184 | 7.67e-138 | 382 |
| MS.gene59440.t1 | MTR_2g073370 | 50.000 | 104 | 49 | 2 | 1 | 101 | 1 | 104 | 9.68e-27 | 103 |
| MS.gene59440.t1 | MTR_4g067320 | 42.537 | 134 | 71 | 4 | 1 | 131 | 1 | 131 | 4.38e-25 | 97.8 |
| MS.gene59440.t1 | MTR_4g067320 | 42.537 | 134 | 71 | 4 | 1 | 131 | 1 | 131 | 4.47e-25 | 97.8 |
| MS.gene59440.t1 | MTR_3g117320 | 33.136 | 169 | 94 | 5 | 1 | 165 | 1 | 154 | 5.23e-24 | 94.7 |
| MS.gene59440.t1 | MTR_2g099010 | 47.959 | 98 | 48 | 2 | 1 | 95 | 1 | 98 | 1.29e-23 | 94.0 |
| MS.gene59440.t1 | MTR_2g099010 | 47.959 | 98 | 48 | 2 | 1 | 95 | 1 | 98 | 1.39e-23 | 94.0 |
| MS.gene59440.t1 | MTR_3g113070 | 42.105 | 114 | 61 | 2 | 1 | 109 | 1 | 114 | 2.78e-23 | 92.8 |
| MS.gene59440.t1 | MTR_4g071200 | 44.000 | 100 | 52 | 2 | 1 | 96 | 1 | 100 | 1.37e-22 | 90.9 |
| MS.gene59440.t1 | MTR_1g023260 | 34.503 | 171 | 98 | 4 | 1 | 167 | 1 | 161 | 2.73e-21 | 86.7 |
| MS.gene59440.t1 | MTR_1g023260 | 46.000 | 100 | 50 | 2 | 1 | 96 | 1 | 100 | 2.87e-21 | 88.6 |
| MS.gene59440.t1 | MTR_3g105710 | 50.602 | 83 | 33 | 1 | 4 | 86 | 5 | 79 | 1.57e-20 | 86.7 |
| MS.gene59440.t1 | MTR_1g013450 | 44.211 | 95 | 43 | 2 | 4 | 96 | 5 | 91 | 9.97e-19 | 82.4 |
| MS.gene59440.t1 | MTR_7g018170 | 48.750 | 80 | 33 | 1 | 5 | 84 | 26 | 97 | 5.63e-18 | 80.9 |
| MS.gene59440.t1 | MTR_4g128930 | 43.210 | 81 | 38 | 1 | 4 | 84 | 21 | 93 | 2.24e-16 | 76.3 |
| MS.gene59440.t1 | MTR_7g108150 | 38.750 | 80 | 41 | 1 | 5 | 84 | 20 | 91 | 2.35e-13 | 67.8 |
| MS.gene59440.t1 | MTR_3g082630 | 27.168 | 173 | 106 | 3 | 1 | 161 | 1 | 165 | 1.18e-11 | 62.8 |
| MS.gene59440.t1 | MTR_5g069480 | 36.905 | 84 | 45 | 1 | 1 | 84 | 1 | 76 | 1.88e-11 | 62.4 |
| MS.gene59440.t1 | MTR_5g069480 | 36.905 | 84 | 45 | 1 | 1 | 84 | 1 | 76 | 2.63e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59440.t1 | AT4G38960 | 61.202 | 183 | 43 | 3 | 1 | 183 | 1 | 155 | 1.83e-74 | 222 |
| MS.gene59440.t1 | AT4G38960 | 61.202 | 183 | 43 | 3 | 1 | 183 | 1 | 155 | 1.83e-74 | 222 |
| MS.gene59440.t1 | AT2G21320 | 60.326 | 184 | 46 | 3 | 1 | 184 | 1 | 157 | 1.04e-70 | 212 |
| MS.gene59440.t1 | AT4G38960 | 49.558 | 226 | 43 | 4 | 1 | 183 | 1 | 198 | 4.57e-66 | 202 |
| MS.gene59440.t1 | AT4G38960 | 55.263 | 152 | 40 | 3 | 34 | 185 | 1 | 124 | 6.05e-52 | 164 |
| MS.gene59440.t1 | AT4G38960 | 55.333 | 150 | 39 | 3 | 34 | 183 | 1 | 122 | 3.02e-51 | 162 |
| MS.gene59440.t1 | AT4G38960 | 55.333 | 150 | 39 | 3 | 34 | 183 | 1 | 122 | 3.02e-51 | 162 |
| MS.gene59440.t1 | AT1G78600 | 50.000 | 104 | 49 | 2 | 1 | 101 | 1 | 104 | 9.71e-28 | 106 |
| MS.gene59440.t1 | AT1G78600 | 50.000 | 104 | 49 | 2 | 1 | 101 | 1 | 104 | 1.30e-27 | 106 |
| MS.gene59440.t1 | AT1G06040 | 50.000 | 98 | 46 | 2 | 1 | 95 | 1 | 98 | 2.58e-24 | 94.4 |
| MS.gene59440.t1 | AT1G75540 | 45.098 | 102 | 50 | 2 | 1 | 96 | 1 | 102 | 5.23e-24 | 96.7 |
| MS.gene59440.t1 | AT1G06040 | 50.000 | 98 | 46 | 2 | 1 | 95 | 1 | 98 | 5.54e-24 | 95.1 |
| MS.gene59440.t1 | AT4G39070 | 46.000 | 100 | 50 | 2 | 1 | 96 | 1 | 100 | 7.28e-24 | 94.7 |
| MS.gene59440.t1 | AT2G24790 | 36.994 | 173 | 87 | 9 | 4 | 166 | 7 | 167 | 3.78e-21 | 87.0 |
| MS.gene59440.t1 | AT2G31380 | 47.115 | 104 | 52 | 2 | 1 | 101 | 1 | 104 | 3.89e-21 | 87.4 |
| MS.gene59440.t1 | AT2G24790 | 36.994 | 173 | 87 | 9 | 4 | 166 | 7 | 167 | 1.39e-20 | 87.0 |
| MS.gene59440.t1 | AT5G24930 | 48.148 | 81 | 34 | 1 | 4 | 84 | 5 | 77 | 1.80e-19 | 84.7 |
| MS.gene59440.t1 | AT5G15850 | 47.253 | 91 | 38 | 2 | 5 | 93 | 12 | 94 | 2.19e-19 | 84.7 |
| MS.gene59440.t1 | AT4G10240 | 42.718 | 103 | 50 | 2 | 1 | 96 | 1 | 101 | 3.91e-19 | 80.5 |
| MS.gene59440.t1 | AT3G02380 | 48.750 | 80 | 33 | 1 | 5 | 84 | 16 | 87 | 1.44e-18 | 82.0 |
| MS.gene59440.t1 | AT2G47890 | 42.222 | 90 | 44 | 1 | 4 | 93 | 12 | 93 | 4.29e-18 | 80.5 |
| MS.gene59440.t1 | AT2G47890 | 42.222 | 90 | 44 | 1 | 4 | 93 | 12 | 93 | 4.76e-18 | 80.5 |
| MS.gene59440.t1 | AT5G15840 | 50.000 | 80 | 32 | 1 | 5 | 84 | 20 | 91 | 4.77e-18 | 80.9 |
| MS.gene59440.t1 | AT5G15840 | 50.000 | 80 | 32 | 1 | 5 | 84 | 20 | 91 | 6.99e-18 | 79.3 |
| MS.gene59440.t1 | AT2G47890 | 42.222 | 90 | 44 | 1 | 4 | 93 | 12 | 93 | 1.38e-17 | 78.2 |
| MS.gene59440.t1 | AT5G57660 | 42.500 | 80 | 34 | 2 | 5 | 84 | 22 | 89 | 7.90e-14 | 68.9 |
| MS.gene59440.t1 | AT1G68190 | 38.710 | 93 | 49 | 1 | 1 | 93 | 10 | 94 | 3.03e-13 | 67.4 |
| MS.gene59440.t1 | AT1G68190 | 38.710 | 93 | 49 | 1 | 1 | 93 | 10 | 94 | 3.03e-13 | 67.4 |
| MS.gene59440.t1 | AT1G28050 | 42.169 | 83 | 40 | 1 | 2 | 84 | 6 | 80 | 3.39e-13 | 67.4 |
| MS.gene59440.t1 | AT1G68190 | 38.710 | 93 | 49 | 1 | 1 | 93 | 39 | 123 | 3.93e-13 | 67.0 |
| MS.gene59440.t1 | AT2G33500 | 40.000 | 80 | 40 | 1 | 5 | 84 | 12 | 83 | 1.34e-11 | 62.8 |
| MS.gene59440.t1 | AT2G33500 | 40.000 | 80 | 40 | 1 | 5 | 84 | 12 | 83 | 1.36e-11 | 62.8 |
Find 39 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCATGTATTCTGTTGTT+AGG | 0.314824 | 5.4:+13230000 | None:intergenic |
| CTCTTTGTTTCATAGTTTCC+AGG | 0.319859 | 5.4:-13230222 | MS.gene59440:intron |
| AATAATCAGGTTAGAGTTCA+TGG | 0.327088 | 5.4:-13229970 | MS.gene59440:CDS |
| AGTTAGCTAGTAGACATGTT+AGG | 0.334611 | 5.4:-13230817 | MS.gene59440:CDS |
| ATGGAAGATATCTTCTCTTT+AGG | 0.344786 | 5.4:-13230566 | MS.gene59440:CDS |
| TTAGAATTCCCATCAGCATT+AGG | 0.367971 | 5.4:+13230057 | None:intergenic |
| TGAACATGCATCAAATAATC+AGG | 0.417562 | 5.4:-13229983 | MS.gene59440:CDS |
| GCCGGGTTGTCTGCATTACT+AGG | 0.455216 | 5.4:+13230192 | None:intergenic |
| GAGAGAAGCAACAAAATCAT+AGG | 0.461871 | 5.4:-13230104 | MS.gene59440:CDS |
| GGATCTAGAGGTTGTGAAGC+CGG | 0.462473 | 5.4:+13230174 | None:intergenic |
| TCAGCATTAGGTTCTGAAGT+TGG | 0.480629 | 5.4:+13230069 | None:intergenic |
| TCGCACCGCGGCACGTCACT+CGG | 0.487301 | 5.4:+13230779 | None:intergenic |
| CATATCACATTGCAAACAAA+GGG | 0.494623 | 5.4:+13230617 | None:intergenic |
| GTTAGCTAGTAGACATGTTA+GGG | 0.499857 | 5.4:-13230816 | MS.gene59440:CDS |
| TTAGGTTCTGAAGTTGGAAC+CGG | 0.500416 | 5.4:+13230075 | None:intergenic |
| GCATTACTAGGTTTATCGCC+TGG | 0.511209 | 5.4:+13230204 | None:intergenic |
| TGCTGATGGGAATTCTAAGA+TGG | 0.518367 | 5.4:-13230052 | MS.gene59440:CDS |
| GATCCAGGTGATATTAAAAG+AGG | 0.532561 | 5.4:-13230156 | MS.gene59440:CDS |
| GATCTAGAGGTTGTGAAGCC+GGG | 0.534120 | 5.4:+13230175 | None:intergenic |
| TCATATCACATTGCAAACAA+AGG | 0.534969 | 5.4:+13230616 | None:intergenic |
| TTAATATCACCTGGATCTAG+AGG | 0.539036 | 5.4:+13230162 | None:intergenic |
| GCTTCACAACCTCTAGATCC+AGG | 0.543997 | 5.4:-13230171 | MS.gene59440:CDS |
| TCTCTTTAGGCAAAGAGTTG+AGG | 0.545750 | 5.4:-13230553 | MS.gene59440:intron |
| TTCTTCTATTGCGAAACAGA+TGG | 0.548785 | 5.4:-13230645 | MS.gene59440:CDS |
| ACTTCAGAACCTAATGCTGA+TGG | 0.548946 | 5.4:-13230066 | MS.gene59440:CDS |
| GCTAGTAGACATGTTAGGGT+TGG | 0.553453 | 5.4:-13230812 | MS.gene59440:CDS |
| ACCTAGTAATGCAGACAACC+CGG | 0.558690 | 5.4:-13230193 | MS.gene59440:CDS |
| ACAAAATCATAGGATGCCTC+CGG | 0.578363 | 5.4:-13230094 | MS.gene59440:CDS |
| GTTGGTGGTAAAAGAACGCA+TGG | 0.582566 | 5.4:-13230585 | MS.gene59440:CDS |
| ATAATCAGGTTAGAGTTCAT+GGG | 0.583574 | 5.4:-13229969 | MS.gene59440:CDS |
| CAAGTCCGAGTGACGTGCCG+CGG | 0.583612 | 5.4:-13230784 | MS.gene59440:CDS |
| CTTCAGAACCTAATGCTGAT+GGG | 0.588602 | 5.4:-13230065 | MS.gene59440:CDS |
| CTGTCGTGCTTGTGATGAGA+AGG | 0.598560 | 5.4:-13231338 | MS.gene59440:intron |
| GGTTCTGAAGTTGGAACCGG+AGG | 0.621508 | 5.4:+13230078 | None:intergenic |
| GACATATGTGAGAATGCCCC+TGG | 0.645262 | 5.4:-13230758 | MS.gene59440:intron |
| GATATGATAGTTCATGTTGG+TGG | 0.666400 | 5.4:-13230600 | MS.gene59440:CDS |
| TGTGATATGATAGTTCATGT+TGG | 0.669655 | 5.4:-13230603 | MS.gene59440:CDS |
| AGCAGCACAGAAAACTATAG+CGG | 0.689026 | 5.4:+13231375 | None:intergenic |
| TTCTCACATATGTCGCACCG+CGG | 0.743597 | 5.4:+13230767 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCCAATTATAAAAAATTGA+TGG | + | chr5.4:13230129-13230148 | None:intergenic | 15.0% |
| !!! | ATAATAATTTTGATACATTG+AGG | + | chr5.4:13230932-13230951 | None:intergenic | 15.0% |
| !!! | ATTTGATTTGATATTTTTTG+TGG | - | chr5.4:13230300-13230319 | MS.gene59440:intron | 15.0% |
| !!! | TAATAATTTTGATACATTGA+GGG | + | chr5.4:13230931-13230950 | None:intergenic | 15.0% |
| !! | GATTATACTTAAAACTAACT+TGG | + | chr5.4:13230439-13230458 | None:intergenic | 20.0% |
| !! | TTATGAAATTAAATTGCAAG+TGG | + | chr5.4:13230263-13230282 | None:intergenic | 20.0% |
| !! | TTGTGTAAATTCAAAATCTA+AGG | - | chr5.4:13230326-13230345 | MS.gene59440:intron | 20.0% |
| !!! | AATAATTTTGATACATTGAG+GGG | + | chr5.4:13230930-13230949 | None:intergenic | 20.0% |
| !!! | AATTCAAGACTAATTCATTT+TGG | + | chr5.4:13230861-13230880 | None:intergenic | 20.0% |
| !!! | AGTTAGTTTTAAGTATAATC+TGG | - | chr5.4:13230439-13230458 | MS.gene59440:intron | 20.0% |
| !!! | GACCATCAATTTTTTATAAT+TGG | - | chr5.4:13230124-13230143 | MS.gene59440:CDS | 20.0% |
| !!! | TTTTAAGTATAATCTGGTAT+TGG | - | chr5.4:13230445-13230464 | MS.gene59440:intron | 20.0% |
| ! | GGTATTATACATACATTTGA+AGG | + | chr5.4:13231131-13231150 | None:intergenic | 25.0% |
| ! | TTAACCTAATCCAACATAAA+TGG | + | chr5.4:13230227-13230246 | None:intergenic | 25.0% |
| ! | TTCTTTAAACAAAATCGAGA+AGG | + | chr5.4:13230414-13230433 | None:intergenic | 25.0% |
| !! | GACTAATTCATTTTGGATAA+AGG | + | chr5.4:13230854-13230873 | None:intergenic | 25.0% |
| !!! | AATGACGATTTTAGCTTATA+AGG | + | chr5.4:13230377-13230396 | None:intergenic | 25.0% |
| !!! | TATCTTTTGTTAGTCACTTT+CGG | - | chr5.4:13231001-13231020 | MS.gene59440:intron | 25.0% |
| !!! | TTGAAATTTTGATACGTTCA+GGG | - | chr5.4:13231032-13231051 | MS.gene59440:intron | 25.0% |
| !!! | TTTGAAATTTTGATACGTTC+AGG | - | chr5.4:13231031-13231050 | MS.gene59440:intron | 25.0% |
| AAAAGAAGAAACTTCTTACC+AGG | + | chr5.4:13230635-13230654 | None:intergenic | 30.0% | |
| AAAGAAGAAACTTCTTACCA+GGG | + | chr5.4:13230634-13230653 | None:intergenic | 30.0% | |
| AATAATCAGGTTAGAGTTCA+TGG | - | chr5.4:13231402-13231421 | MS.gene59440:CDS | 30.0% | |
| ACTAACAAAAGATACATCTG+AGG | + | chr5.4:13230995-13231014 | None:intergenic | 30.0% | |
| ATAATCAGGTTAGAGTTCAT+GGG | - | chr5.4:13231403-13231422 | MS.gene59440:CDS | 30.0% | |
| ATGGAAGATATCTTCTCTTT+AGG | - | chr5.4:13230806-13230825 | MS.gene59440:CDS | 30.0% | |
| CATATCACATTGCAAACAAA+GGG | + | chr5.4:13230758-13230777 | None:intergenic | 30.0% | |
| CCACTTCCTAAACAAAAAAT+GGG | - | chr5.4:13231246-13231265 | MS.gene59440:intron | 30.0% | |
| CTTATAAGGTCAAACTCTTA+CGG | + | chr5.4:13230363-13230382 | None:intergenic | 30.0% | |
| GACTAATAAAAGACACATTC+AGG | + | chr5.4:13230964-13230983 | None:intergenic | 30.0% | |
| GATTAGGTTAAAGATTGGAT+TGG | - | chr5.4:13230236-13230255 | MS.gene59440:intron | 30.0% | |
| TCATATCACATTGCAAACAA+AGG | + | chr5.4:13230759-13230778 | None:intergenic | 30.0% | |
| TCCACTTCCTAAACAAAAAA+TGG | - | chr5.4:13231245-13231264 | MS.gene59440:intron | 30.0% | |
| TGAACATGCATCAAATAATC+AGG | - | chr5.4:13231389-13231408 | MS.gene59440:CDS | 30.0% | |
| TGTGATATGATAGTTCATGT+TGG | - | chr5.4:13230769-13230788 | MS.gene59440:CDS | 30.0% | |
| TGTTCATGTATTCTGTTGTT+AGG | + | chr5.4:13231375-13231394 | None:intergenic | 30.0% | |
| TTGAATGAGTCCATTTATGT+TGG | - | chr5.4:13230214-13230233 | MS.gene59440:intron | 30.0% | |
| ! | GTGTCTTTTATTAGTCAGTT+TGG | - | chr5.4:13230968-13230987 | MS.gene59440:intron | 30.0% |
| ! | TGTTGGATTAGGTTAAAGAT+TGG | - | chr5.4:13230231-13230250 | MS.gene59440:intron | 30.0% |
| ! | TTTTAATCCTTGAATGTGTG+AGG | - | chr5.4:13230892-13230911 | MS.gene59440:intron | 30.0% |
| !! | ATCTTTTGTTAGTCACTTTC+GGG | - | chr5.4:13231002-13231021 | MS.gene59440:intron | 30.0% |
| !! | TGGAATTTGATTGATTTTCC+TGG | - | chr5.4:13230465-13230484 | MS.gene59440:intron | 30.0% |
| !!! | TTCTCTCCCATTTTTTGTTT+AGG | + | chr5.4:13231255-13231274 | None:intergenic | 30.0% |
| AAGAAGAAACTTCTTACCAG+GGG | + | chr5.4:13230633-13230652 | None:intergenic | 35.0% | |
| AGTTAGCTAGTAGACATGTT+AGG | - | chr5.4:13230555-13230574 | MS.gene59440:CDS | 35.0% | |
| ATCAGAAGAACAACACTACA+AGG | + | chr5.4:13230661-13230680 | None:intergenic | 35.0% | |
| CTGGAAACTATGAAACAAAG+AGG | + | chr5.4:13231152-13231171 | None:intergenic | 35.0% | |
| GACATCATTTCACACACTTA+GGG | - | chr5.4:13231063-13231082 | MS.gene59440:intron | 35.0% | |
| GAGAGAAGCAACAAAATCAT+AGG | - | chr5.4:13231268-13231287 | MS.gene59440:intron | 35.0% | |
| GAGTCCATTTATGTTGGATT+AGG | - | chr5.4:13230220-13230239 | MS.gene59440:intron | 35.0% | |
| GATATGATAGTTCATGTTGG+TGG | - | chr5.4:13230772-13230791 | MS.gene59440:CDS | 35.0% | |
| GATCCAGGTGATATTAAAAG+AGG | - | chr5.4:13231216-13231235 | MS.gene59440:intron | 35.0% | |
| GGTCAATGTCTTTCAACTAA+TGG | - | chr5.4:13230486-13230505 | MS.gene59440:intron | 35.0% | |
| GTTAGCTAGTAGACATGTTA+GGG | - | chr5.4:13230556-13230575 | MS.gene59440:CDS | 35.0% | |
| TGACATCATTTCACACACTT+AGG | - | chr5.4:13231062-13231081 | MS.gene59440:intron | 35.0% | |
| TTAATATCACCTGGATCTAG+AGG | + | chr5.4:13231213-13231232 | None:intergenic | 35.0% | |
| TTAGAATTCCCATCAGCATT+AGG | + | chr5.4:13231318-13231337 | None:intergenic | 35.0% | |
| TTAGTTGAAAGACATTGACC+AGG | + | chr5.4:13230486-13230505 | None:intergenic | 35.0% | |
| TTCTTCTATTGCGAAACAGA+TGG | - | chr5.4:13230727-13230746 | MS.gene59440:intron | 35.0% | |
| ! | CTCTTTGTTTCATAGTTTCC+AGG | - | chr5.4:13231150-13231169 | MS.gene59440:intron | 35.0% |
| ! | GGTTCAAAGTTTGCAACTTT+TGG | - | chr5.4:13230507-13230526 | MS.gene59440:intron | 35.0% |
| ! | TGTCCTCTTTTAATATCACC+TGG | + | chr5.4:13231222-13231241 | None:intergenic | 35.0% |
| !! | TCTTTTGTTAGTCACTTTCG+GGG | - | chr5.4:13231003-13231022 | MS.gene59440:intron | 35.0% |
| !! | TTGCAACTTTTGGAAATTGC+AGG | - | chr5.4:13230517-13230536 | MS.gene59440:intron | 35.0% |
| !!! | CCCATTTTTTGTTTAGGAAG+TGG | + | chr5.4:13231249-13231268 | None:intergenic | 35.0% |
| ACAAAATCATAGGATGCCTC+CGG | - | chr5.4:13231278-13231297 | MS.gene59440:intron | 40.0% | |
| ACTTCAGAACCTAATGCTGA+TGG | - | chr5.4:13231306-13231325 | MS.gene59440:intron | 40.0% | |
| AGCAGCACAGAAAACTATAG+CGG | + | chr5.4:13230000-13230019 | None:intergenic | 40.0% | |
| CTTCAGAACCTAATGCTGAT+GGG | - | chr5.4:13231307-13231326 | MS.gene59440:intron | 40.0% | |
| TCTCTTTAGGCAAAGAGTTG+AGG | - | chr5.4:13230819-13230838 | MS.gene59440:CDS | 40.0% | |
| ! | TGCTGATGGGAATTCTAAGA+TGG | - | chr5.4:13231320-13231339 | MS.gene59440:intron | 40.0% |
| !! | TCAGCATTAGGTTCTGAAGT+TGG | + | chr5.4:13231306-13231325 | None:intergenic | 40.0% |
| !! | TTAGGTTCTGAAGTTGGAAC+CGG | + | chr5.4:13231300-13231319 | None:intergenic | 40.0% |
| ACCTAGTAATGCAGACAACC+CGG | - | chr5.4:13231179-13231198 | MS.gene59440:intron | 45.0% | |
| GCATTACTAGGTTTATCGCC+TGG | + | chr5.4:13231171-13231190 | None:intergenic | 45.0% | |
| GCTAGTAGACATGTTAGGGT+TGG | - | chr5.4:13230560-13230579 | MS.gene59440:CDS | 45.0% | |
| !! | AGTTTTCTGTGCTGCTGATG+AGG | - | chr5.4:13230004-13230023 | MS.gene59440:CDS | 45.0% |
| !! | GTTGGTGGTAAAAGAACGCA+TGG | - | chr5.4:13230787-13230806 | MS.gene59440:CDS | 45.0% |
| CTGTCGTGCTTGTGATGAGA+AGG | - | chr5.4:13230034-13230053 | MS.gene59440:CDS | 50.0% | |
| GACATATGTGAGAATGCCCC+TGG | - | chr5.4:13230614-13230633 | MS.gene59440:CDS | 50.0% | |
| GATCTAGAGGTTGTGAAGCC+GGG | + | chr5.4:13231200-13231219 | None:intergenic | 50.0% | |
| GCTTCACAACCTCTAGATCC+AGG | - | chr5.4:13231201-13231220 | MS.gene59440:intron | 50.0% | |
| GGATCTAGAGGTTGTGAAGC+CGG | + | chr5.4:13231201-13231220 | None:intergenic | 50.0% | |
| GTGACTGCCTCACACATTCA+AGG | + | chr5.4:13230902-13230921 | None:intergenic | 50.0% | |
| TTCTCACATATGTCGCACCG+CGG | + | chr5.4:13230608-13230627 | None:intergenic | 50.0% | |
| GCCGGGTTGTCTGCATTACT+AGG | + | chr5.4:13231183-13231202 | None:intergenic | 55.0% | |
| !! | GGTTCTGAAGTTGGAACCGG+AGG | + | chr5.4:13231297-13231316 | None:intergenic | 55.0% |
| CAAGTCCGAGTGACGTGCCG+CGG | - | chr5.4:13230588-13230607 | MS.gene59440:CDS | 65.0% | |
| TCGCACCGCGGCACGTCACT+CGG | + | chr5.4:13230596-13230615 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 13229963 | 13231431 | 13229963 | ID=MS.gene59440 |
| chr5.4 | mRNA | 13229963 | 13231431 | 13229963 | ID=MS.gene59440.t1;Parent=MS.gene59440 |
| chr5.4 | exon | 13231339 | 13231431 | 13231339 | ID=MS.gene59440.t1.exon1;Parent=MS.gene59440.t1 |
| chr5.4 | CDS | 13231339 | 13231431 | 13231339 | ID=cds.MS.gene59440.t1;Parent=MS.gene59440.t1 |
| chr5.4 | exon | 13230759 | 13230855 | 13230759 | ID=MS.gene59440.t1.exon2;Parent=MS.gene59440.t1 |
| chr5.4 | CDS | 13230759 | 13230855 | 13230759 | ID=cds.MS.gene59440.t1;Parent=MS.gene59440.t1 |
| chr5.4 | exon | 13230554 | 13230669 | 13230554 | ID=MS.gene59440.t1.exon3;Parent=MS.gene59440.t1 |
| chr5.4 | CDS | 13230554 | 13230669 | 13230554 | ID=cds.MS.gene59440.t1;Parent=MS.gene59440.t1 |
| chr5.4 | exon | 13229963 | 13230229 | 13229963 | ID=MS.gene59440.t1.exon4;Parent=MS.gene59440.t1 |
| chr5.4 | CDS | 13229963 | 13230229 | 13229963 | ID=cds.MS.gene59440.t1;Parent=MS.gene59440.t1 |
| Gene Sequence |
| Protein sequence |
