Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68034.t1 | XP_013453547.1 | 99.5 | 185 | 1 | 0 | 1 | 185 | 1 | 185 | 1.60E-102 | 382.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68034.t1 | C0SVM5 | 61.2 | 183 | 43 | 3 | 1 | 183 | 1 | 155 | 6.7e-57 | 221.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68034.t1 | A0A072UCQ4 | 99.5 | 185 | 1 | 0 | 1 | 185 | 1 | 185 | 1.2e-102 | 382.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene68034.t1 | TF | DBB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050702 | MS.gene68034 | 0.890264 | 1.15E-73 | -1.69E-46 |
| MS.gene052224 | MS.gene68034 | 0.827311 | 1.68E-54 | -1.69E-46 |
| MS.gene053401 | MS.gene68034 | -0.826619 | 2.46E-54 | -1.69E-46 |
| MS.gene056338 | MS.gene68034 | -0.824886 | 6.33E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59440 | MS.gene68034 | PPI |
| MS.gene64738 | MS.gene68034 | PPI |
| MS.gene68034 | MS.gene010593 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68034.t1 | MTR_5g021580 | 99.459 | 185 | 1 | 0 | 1 | 185 | 1 | 185 | 6.56e-139 | 386 |
| MS.gene68034.t1 | MTR_5g021580 | 100.000 | 184 | 0 | 0 | 1 | 184 | 1 | 184 | 2.64e-138 | 384 |
| MS.gene68034.t1 | MTR_2g073370 | 50.000 | 104 | 49 | 2 | 1 | 101 | 1 | 104 | 1.69e-26 | 103 |
| MS.gene68034.t1 | MTR_4g067320 | 42.537 | 134 | 71 | 4 | 1 | 131 | 1 | 131 | 6.96e-25 | 97.8 |
| MS.gene68034.t1 | MTR_4g067320 | 42.537 | 134 | 71 | 4 | 1 | 131 | 1 | 131 | 7.26e-25 | 97.8 |
| MS.gene68034.t1 | MTR_3g117320 | 33.136 | 169 | 94 | 5 | 1 | 165 | 1 | 154 | 8.33e-24 | 94.7 |
| MS.gene68034.t1 | MTR_2g099010 | 47.959 | 98 | 48 | 2 | 1 | 95 | 1 | 98 | 1.67e-23 | 94.4 |
| MS.gene68034.t1 | MTR_2g099010 | 47.959 | 98 | 48 | 2 | 1 | 95 | 1 | 98 | 1.74e-23 | 94.4 |
| MS.gene68034.t1 | MTR_3g113070 | 42.105 | 114 | 61 | 2 | 1 | 109 | 1 | 114 | 2.25e-23 | 93.6 |
| MS.gene68034.t1 | MTR_4g071200 | 44.000 | 100 | 52 | 2 | 1 | 96 | 1 | 100 | 1.22e-22 | 91.7 |
| MS.gene68034.t1 | MTR_1g023260 | 46.000 | 100 | 50 | 2 | 1 | 96 | 1 | 100 | 3.10e-21 | 89.0 |
| MS.gene68034.t1 | MTR_1g023260 | 34.503 | 171 | 98 | 4 | 1 | 167 | 1 | 161 | 4.25e-21 | 86.7 |
| MS.gene68034.t1 | MTR_3g105710 | 50.602 | 83 | 33 | 1 | 4 | 86 | 5 | 79 | 1.58e-20 | 87.4 |
| MS.gene68034.t1 | MTR_1g013450 | 44.565 | 92 | 41 | 2 | 4 | 93 | 5 | 88 | 1.02e-18 | 82.8 |
| MS.gene68034.t1 | MTR_7g018170 | 48.750 | 80 | 33 | 1 | 5 | 84 | 26 | 97 | 4.84e-18 | 81.6 |
| MS.gene68034.t1 | MTR_4g128930 | 43.210 | 81 | 38 | 1 | 4 | 84 | 21 | 93 | 2.65e-16 | 76.6 |
| MS.gene68034.t1 | MTR_7g108150 | 38.750 | 80 | 41 | 1 | 5 | 84 | 20 | 91 | 2.49e-13 | 68.2 |
| MS.gene68034.t1 | MTR_3g082630 | 33.036 | 112 | 63 | 2 | 1 | 112 | 1 | 100 | 1.61e-11 | 62.8 |
| MS.gene68034.t1 | MTR_5g069480 | 36.905 | 84 | 45 | 1 | 1 | 84 | 1 | 76 | 1.89e-11 | 62.8 |
| MS.gene68034.t1 | MTR_5g069480 | 36.905 | 84 | 45 | 1 | 1 | 84 | 1 | 76 | 2.48e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68034.t1 | AT4G38960 | 61.202 | 183 | 43 | 3 | 1 | 183 | 1 | 155 | 1.55e-74 | 223 |
| MS.gene68034.t1 | AT4G38960 | 61.202 | 183 | 43 | 3 | 1 | 183 | 1 | 155 | 1.55e-74 | 223 |
| MS.gene68034.t1 | AT2G21320 | 60.326 | 184 | 46 | 3 | 1 | 184 | 1 | 157 | 8.01e-71 | 213 |
| MS.gene68034.t1 | AT4G38960 | 49.558 | 226 | 43 | 4 | 1 | 183 | 1 | 198 | 3.97e-66 | 203 |
| MS.gene68034.t1 | AT4G38960 | 52.866 | 157 | 46 | 3 | 34 | 190 | 1 | 129 | 2.07e-52 | 166 |
| MS.gene68034.t1 | AT4G38960 | 55.333 | 150 | 39 | 3 | 34 | 183 | 1 | 122 | 3.65e-51 | 162 |
| MS.gene68034.t1 | AT4G38960 | 55.333 | 150 | 39 | 3 | 34 | 183 | 1 | 122 | 3.65e-51 | 162 |
| MS.gene68034.t1 | AT1G78600 | 50.000 | 104 | 49 | 2 | 1 | 101 | 1 | 104 | 1.48e-27 | 106 |
| MS.gene68034.t1 | AT1G78600 | 50.000 | 104 | 49 | 2 | 1 | 101 | 1 | 104 | 1.98e-27 | 106 |
| MS.gene68034.t1 | AT1G06040 | 50.000 | 98 | 46 | 2 | 1 | 95 | 1 | 98 | 2.68e-24 | 94.7 |
| MS.gene68034.t1 | AT1G75540 | 45.098 | 102 | 50 | 2 | 1 | 96 | 1 | 102 | 4.76e-24 | 97.4 |
| MS.gene68034.t1 | AT1G06040 | 50.000 | 98 | 46 | 2 | 1 | 95 | 1 | 98 | 6.94e-24 | 95.5 |
| MS.gene68034.t1 | AT4G39070 | 46.000 | 100 | 50 | 2 | 1 | 96 | 1 | 100 | 9.40e-24 | 95.1 |
| MS.gene68034.t1 | AT2G24790 | 36.994 | 173 | 87 | 9 | 4 | 166 | 7 | 167 | 3.24e-21 | 87.8 |
| MS.gene68034.t1 | AT2G31380 | 47.115 | 104 | 52 | 2 | 1 | 101 | 1 | 104 | 5.36e-21 | 87.4 |
| MS.gene68034.t1 | AT2G24790 | 47.826 | 92 | 38 | 2 | 4 | 93 | 7 | 90 | 1.59e-20 | 87.4 |
| MS.gene68034.t1 | AT5G15850 | 47.253 | 91 | 38 | 2 | 5 | 93 | 12 | 94 | 1.45e-19 | 85.5 |
| MS.gene68034.t1 | AT5G24930 | 48.148 | 81 | 34 | 1 | 4 | 84 | 5 | 77 | 1.91e-19 | 85.1 |
| MS.gene68034.t1 | AT4G10240 | 42.718 | 103 | 50 | 2 | 1 | 96 | 1 | 101 | 4.57e-19 | 80.5 |
| MS.gene68034.t1 | AT3G02380 | 46.154 | 91 | 39 | 2 | 5 | 93 | 16 | 98 | 1.35e-18 | 82.8 |
| MS.gene68034.t1 | AT5G15840 | 50.000 | 80 | 32 | 1 | 5 | 84 | 20 | 91 | 3.81e-18 | 81.6 |
| MS.gene68034.t1 | AT2G47890 | 42.222 | 90 | 44 | 1 | 4 | 93 | 12 | 93 | 5.62e-18 | 80.5 |
| MS.gene68034.t1 | AT5G15840 | 50.000 | 80 | 32 | 1 | 5 | 84 | 20 | 91 | 5.76e-18 | 80.1 |
| MS.gene68034.t1 | AT2G47890 | 42.222 | 90 | 44 | 1 | 4 | 93 | 12 | 93 | 5.95e-18 | 80.9 |
| MS.gene68034.t1 | AT2G47890 | 42.222 | 90 | 44 | 1 | 4 | 93 | 12 | 93 | 1.33e-17 | 78.6 |
| MS.gene68034.t1 | AT5G57660 | 42.500 | 80 | 34 | 2 | 5 | 84 | 22 | 89 | 9.45e-14 | 69.3 |
| MS.gene68034.t1 | AT1G68190 | 38.710 | 93 | 49 | 1 | 1 | 93 | 10 | 94 | 2.83e-13 | 67.8 |
| MS.gene68034.t1 | AT1G68190 | 38.710 | 93 | 49 | 1 | 1 | 93 | 10 | 94 | 2.83e-13 | 67.8 |
| MS.gene68034.t1 | AT1G68190 | 38.710 | 93 | 49 | 1 | 1 | 93 | 39 | 123 | 3.10e-13 | 67.8 |
| MS.gene68034.t1 | AT1G28050 | 42.169 | 83 | 40 | 1 | 2 | 84 | 6 | 80 | 4.52e-13 | 67.4 |
| MS.gene68034.t1 | AT2G33500 | 40.000 | 80 | 40 | 1 | 5 | 84 | 12 | 83 | 1.28e-11 | 63.2 |
| MS.gene68034.t1 | AT2G33500 | 40.000 | 80 | 40 | 1 | 5 | 84 | 12 | 83 | 1.53e-11 | 62.8 |
Find 39 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCATGTATTCTGTTGTT+AGG | 0.314824 | 5.3:+12373158 | None:intergenic |
| CTCTTTGTTTCATAGTTTCC+AGG | 0.319859 | 5.3:-12373380 | MS.gene68034:intron |
| AGTTAGCTAGTAGACATGTT+AGG | 0.334611 | 5.3:-12373975 | MS.gene68034:CDS |
| ATGGAAGATATCTTCTCTTT+AGG | 0.344786 | 5.3:-12373724 | MS.gene68034:CDS |
| TTAGAATTCCCATCAGCATT+AGG | 0.367971 | 5.3:+12373215 | None:intergenic |
| TGAACATGCATCAAATAATC+AGG | 0.417562 | 5.3:-12373141 | MS.gene68034:intron |
| AGTGAAATTGATAAACGTAT+TGG | 0.423281 | 5.3:-12373017 | MS.gene68034:CDS |
| GCCGGGTTGTCTGCATTACT+AGG | 0.455216 | 5.3:+12373350 | None:intergenic |
| GAGAGAAGCAACAAAATCAT+AGG | 0.461871 | 5.3:-12373262 | MS.gene68034:CDS |
| GGATCTAGAGGTTGTGAAGC+CGG | 0.462473 | 5.3:+12373332 | None:intergenic |
| AACGTATTGGCTGTTGCTAC+TGG | 0.479764 | 5.3:-12373004 | MS.gene68034:CDS |
| TCAGCATTAGGTTCTGAAGT+TGG | 0.480629 | 5.3:+12373227 | None:intergenic |
| TCGCACCGCGGCACGTCACT+CGG | 0.487301 | 5.3:+12373937 | None:intergenic |
| CATATCACATTGCAAACAAA+GGG | 0.494623 | 5.3:+12373775 | None:intergenic |
| GTTAGCTAGTAGACATGTTA+GGG | 0.499857 | 5.3:-12373974 | MS.gene68034:CDS |
| TTAGGTTCTGAAGTTGGAAC+CGG | 0.500416 | 5.3:+12373233 | None:intergenic |
| GCATTACTAGGTTTATCGCC+TGG | 0.511209 | 5.3:+12373362 | None:intergenic |
| TGCTGATGGGAATTCTAAGA+TGG | 0.518367 | 5.3:-12373210 | MS.gene68034:CDS |
| GATCCAGGTGATATTAAAAG+AGG | 0.532561 | 5.3:-12373314 | MS.gene68034:CDS |
| GATCTAGAGGTTGTGAAGCC+GGG | 0.534120 | 5.3:+12373333 | None:intergenic |
| TCATATCACATTGCAAACAA+AGG | 0.534969 | 5.3:+12373774 | None:intergenic |
| TTAATATCACCTGGATCTAG+AGG | 0.539036 | 5.3:+12373320 | None:intergenic |
| GCTTCACAACCTCTAGATCC+AGG | 0.543997 | 5.3:-12373329 | MS.gene68034:CDS |
| TCTCTTTAGGCAAAGAGTTG+AGG | 0.545750 | 5.3:-12373711 | MS.gene68034:intron |
| TTCTTCTATTGCGAAACAGA+TGG | 0.548785 | 5.3:-12373803 | MS.gene68034:CDS |
| ACTTCAGAACCTAATGCTGA+TGG | 0.548946 | 5.3:-12373224 | MS.gene68034:CDS |
| GCTAGTAGACATGTTAGGGT+TGG | 0.553453 | 5.3:-12373970 | MS.gene68034:CDS |
| ACCTAGTAATGCAGACAACC+CGG | 0.558690 | 5.3:-12373351 | MS.gene68034:CDS |
| ACAAAATCATAGGATGCCTC+CGG | 0.578363 | 5.3:-12373252 | MS.gene68034:CDS |
| GTTGGTGGTAAAAGAACGCA+TGG | 0.582566 | 5.3:-12373743 | MS.gene68034:CDS |
| CAAGTCCGAGTGACGTGCCG+CGG | 0.583612 | 5.3:-12373942 | MS.gene68034:CDS |
| CTTCAGAACCTAATGCTGAT+GGG | 0.588602 | 5.3:-12373223 | MS.gene68034:CDS |
| CTGTCGTGCTTGTGATGAGA+AGG | 0.598560 | 5.3:-12374494 | MS.gene68034:intron |
| GGTTCTGAAGTTGGAACCGG+AGG | 0.621508 | 5.3:+12373236 | None:intergenic |
| GACATATGTGAGAATGCCCC+TGG | 0.645262 | 5.3:-12373916 | MS.gene68034:intron |
| GATATGATAGTTCATGTTGG+TGG | 0.666400 | 5.3:-12373758 | MS.gene68034:CDS |
| TGTGATATGATAGTTCATGT+TGG | 0.669655 | 5.3:-12373761 | MS.gene68034:CDS |
| AGCAGCACAGAAAACTATAG+CGG | 0.689026 | 5.3:+12374531 | None:intergenic |
| TTCTCACATATGTCGCACCG+CGG | 0.743597 | 5.3:+12373925 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATAATTTTGATACATTG+AGG | + | chr5.3:12373961-12373980 | None:intergenic | 15.0% |
| !!! | ATTTGATTTGATATTTTTTG+TGG | - | chr5.3:12373330-12373349 | MS.gene68034:CDS | 15.0% |
| !!! | TAATAATTTTGATACATTGA+GGG | + | chr5.3:12373960-12373979 | None:intergenic | 15.0% |
| !! | AAACATTACACTTACAAAAA+AGG | + | chr5.3:12373181-12373200 | None:intergenic | 20.0% |
| !! | GATTATACTTAAAACTAACT+TGG | + | chr5.3:12373468-12373487 | None:intergenic | 20.0% |
| !! | GTCCAATTATAAAAAATTGA+TGG | + | chr5.3:12373159-12373178 | None:intergenic | 20.0% |
| !! | TTGTGTAAATTCAAAATCTA+AGG | - | chr5.3:12373355-12373374 | MS.gene68034:CDS | 20.0% |
| !!! | AATTCAAGACTAATTCATTT+TGG | + | chr5.3:12373890-12373909 | None:intergenic | 20.0% |
| !!! | AGTTAGTTTTAAGTATAATC+TGG | - | chr5.3:12373468-12373487 | MS.gene68034:intron | 20.0% |
| !!! | GACCATCAATTTTTTATAAT+TGG | - | chr5.3:12373154-12373173 | MS.gene68034:CDS | 20.0% |
| !!! | TTTTAAGTATAATCTGGTAT+TGG | - | chr5.3:12373474-12373493 | MS.gene68034:intron | 20.0% |
| ! | AGTGAAATTGATAAACGTAT+TGG | - | chr5.3:12374542-12374561 | MS.gene68034:CDS | 25.0% |
| ! | GGTATTATACATACATTTGA+AGG | + | chr5.3:12374160-12374179 | None:intergenic | 25.0% |
| ! | TTAACCTAATCCAACATAAA+TGG | + | chr5.3:12373257-12373276 | None:intergenic | 25.0% |
| ! | TTATGAAACTAAATTGCAAG+TGG | + | chr5.3:12373293-12373312 | None:intergenic | 25.0% |
| ! | TTCTTTAAACAAAATCGAGA+AGG | + | chr5.3:12373443-12373462 | None:intergenic | 25.0% |
| !! | GACTAATTCATTTTGGATAA+AGG | + | chr5.3:12373883-12373902 | None:intergenic | 25.0% |
| !!! | AATGACGATTTTAGCTTATA+AGG | + | chr5.3:12373406-12373425 | None:intergenic | 25.0% |
| !!! | TATCTTTTGTTAGTCACTTT+CGG | - | chr5.3:12374030-12374049 | MS.gene68034:intron | 25.0% |
| !!! | TTGAAATTTTGATACGTTCA+GGG | - | chr5.3:12374061-12374080 | MS.gene68034:intron | 25.0% |
| !!! | TTTGAAATTTTGATACGTTC+AGG | - | chr5.3:12374060-12374079 | MS.gene68034:intron | 25.0% |
| AAAAGAAGAAACTTCTTACC+AGG | + | chr5.3:12373664-12373683 | None:intergenic | 30.0% | |
| AAAGAAGAAACTTCTTACCA+GGG | + | chr5.3:12373663-12373682 | None:intergenic | 30.0% | |
| AATAATCAGGTTAGAGTTCA+TGG | - | chr5.3:12374431-12374450 | MS.gene68034:intron | 30.0% | |
| ACTAACAAAAGATACATCTG+AGG | + | chr5.3:12374024-12374043 | None:intergenic | 30.0% | |
| ATAATCAGGTTAGAGTTCAT+GGG | - | chr5.3:12374432-12374451 | MS.gene68034:intron | 30.0% | |
| ATGGAAGATATCTTCTCTTT+AGG | - | chr5.3:12373835-12373854 | MS.gene68034:intron | 30.0% | |
| CATATCACATTGCAAACAAA+GGG | + | chr5.3:12373787-12373806 | None:intergenic | 30.0% | |
| CCACTTCCTAAACAAAAAAT+GGG | - | chr5.3:12374275-12374294 | MS.gene68034:intron | 30.0% | |
| CTTATAAGGTCAAACTCTTA+CGG | + | chr5.3:12373392-12373411 | None:intergenic | 30.0% | |
| GACTAATAAAAGACACATTC+AGG | + | chr5.3:12373993-12374012 | None:intergenic | 30.0% | |
| GATTAGGTTAAAGATTGGAT+TGG | - | chr5.3:12373266-12373285 | MS.gene68034:CDS | 30.0% | |
| TCATATCACATTGCAAACAA+AGG | + | chr5.3:12373788-12373807 | None:intergenic | 30.0% | |
| TCCACTTCCTAAACAAAAAA+TGG | - | chr5.3:12374274-12374293 | MS.gene68034:intron | 30.0% | |
| TGAACATGCATCAAATAATC+AGG | - | chr5.3:12374418-12374437 | MS.gene68034:intron | 30.0% | |
| TGTGATATGATAGTTCATGT+TGG | - | chr5.3:12373798-12373817 | MS.gene68034:CDS | 30.0% | |
| TGTTCATGTATTCTGTTGTT+AGG | + | chr5.3:12374404-12374423 | None:intergenic | 30.0% | |
| TTGAATGAGTCCATTTATGT+TGG | - | chr5.3:12373244-12373263 | MS.gene68034:CDS | 30.0% | |
| ! | GTGTCTTTTATTAGTCAGTT+AGG | - | chr5.3:12373997-12374016 | MS.gene68034:intron | 30.0% |
| ! | TGTTGGATTAGGTTAAAGAT+TGG | - | chr5.3:12373261-12373280 | MS.gene68034:CDS | 30.0% |
| ! | TTTTAATCCTTGAATGTGTG+AGG | - | chr5.3:12373921-12373940 | MS.gene68034:CDS | 30.0% |
| !! | ATCTTTTGTTAGTCACTTTC+GGG | - | chr5.3:12374031-12374050 | MS.gene68034:intron | 30.0% |
| !! | TGGAATTTGATTGATTTTCC+TGG | - | chr5.3:12373494-12373513 | MS.gene68034:intron | 30.0% |
| !!! | TTCTCTCCCATTTTTTGTTT+AGG | + | chr5.3:12374284-12374303 | None:intergenic | 30.0% |
| AAGAAGAAACTTCTTACCAG+GGG | + | chr5.3:12373662-12373681 | None:intergenic | 35.0% | |
| AGTTAGCTAGTAGACATGTT+AGG | - | chr5.3:12373584-12373603 | MS.gene68034:intron | 35.0% | |
| ATCAGAAGAACAACACTACA+AGG | + | chr5.3:12373690-12373709 | None:intergenic | 35.0% | |
| CTGGAAACTATGAAACAAAG+AGG | + | chr5.3:12374181-12374200 | None:intergenic | 35.0% | |
| GACATCGTTTCACACATTTA+GGG | - | chr5.3:12374092-12374111 | MS.gene68034:intron | 35.0% | |
| GAGAGAAGCAACAAAATCAT+AGG | - | chr5.3:12374297-12374316 | MS.gene68034:intron | 35.0% | |
| GAGTCCATTTATGTTGGATT+AGG | - | chr5.3:12373250-12373269 | MS.gene68034:CDS | 35.0% | |
| GATATGATAGTTCATGTTGG+TGG | - | chr5.3:12373801-12373820 | MS.gene68034:CDS | 35.0% | |
| GATCCAGGTGATATTAAAAG+AGG | - | chr5.3:12374245-12374264 | MS.gene68034:intron | 35.0% | |
| GGTCAATGTCTTTCAACTAA+TGG | - | chr5.3:12373515-12373534 | MS.gene68034:intron | 35.0% | |
| GTTAGCTAGTAGACATGTTA+GGG | - | chr5.3:12373585-12373604 | MS.gene68034:intron | 35.0% | |
| TGACATCGTTTCACACATTT+AGG | - | chr5.3:12374091-12374110 | MS.gene68034:intron | 35.0% | |
| TTAATATCACCTGGATCTAG+AGG | + | chr5.3:12374242-12374261 | None:intergenic | 35.0% | |
| TTAGAATTCCCATCAGCATT+AGG | + | chr5.3:12374347-12374366 | None:intergenic | 35.0% | |
| TTAGTTGAAAGACATTGACC+AGG | + | chr5.3:12373515-12373534 | None:intergenic | 35.0% | |
| TTCTTCTATTGCGAAACAGA+TGG | - | chr5.3:12373756-12373775 | MS.gene68034:CDS | 35.0% | |
| ! | CTCTTTGTTTCATAGTTTCC+AGG | - | chr5.3:12374179-12374198 | MS.gene68034:intron | 35.0% |
| ! | GGTTCAAAGTTTGCAACTTT+TGG | - | chr5.3:12373536-12373555 | MS.gene68034:intron | 35.0% |
| ! | TGTCCTCTTTTAATATCACC+TGG | + | chr5.3:12374251-12374270 | None:intergenic | 35.0% |
| !! | TCTTTTGTTAGTCACTTTCG+GGG | - | chr5.3:12374032-12374051 | MS.gene68034:intron | 35.0% |
| !! | TTGCAACTTTTGGAAATTGC+AGG | - | chr5.3:12373546-12373565 | MS.gene68034:intron | 35.0% |
| !!! | CCCATTTTTTGTTTAGGAAG+TGG | + | chr5.3:12374278-12374297 | None:intergenic | 35.0% |
| ACAAAATCATAGGATGCCTC+CGG | - | chr5.3:12374307-12374326 | MS.gene68034:intron | 40.0% | |
| ACTTCAGAACCTAATGCTGA+TGG | - | chr5.3:12374335-12374354 | MS.gene68034:intron | 40.0% | |
| AGCAGCACAGAAAACTATAG+CGG | + | chr5.3:12373031-12373050 | None:intergenic | 40.0% | |
| CTTCAGAACCTAATGCTGAT+GGG | - | chr5.3:12374336-12374355 | MS.gene68034:intron | 40.0% | |
| GGAAGTAAACTTTGTTCTGC+TGG | - | chr5.3:12374453-12374472 | MS.gene68034:intron | 40.0% | |
| TCTCTTTAGGCAAAGAGTTG+AGG | - | chr5.3:12373848-12373867 | MS.gene68034:intron | 40.0% | |
| ! | TGCTGATGGGAATTCTAAGA+TGG | - | chr5.3:12374349-12374368 | MS.gene68034:intron | 40.0% |
| !! | TCAGCATTAGGTTCTGAAGT+TGG | + | chr5.3:12374335-12374354 | None:intergenic | 40.0% |
| !! | TTAGGTTCTGAAGTTGGAAC+CGG | + | chr5.3:12374329-12374348 | None:intergenic | 40.0% |
| ACCTAGTAATGCAGACAACC+CGG | - | chr5.3:12374208-12374227 | MS.gene68034:intron | 45.0% | |
| GCATTACTAGGTTTATCGCC+TGG | + | chr5.3:12374200-12374219 | None:intergenic | 45.0% | |
| GCTAGTAGACATGTTAGGGT+TGG | - | chr5.3:12373589-12373608 | MS.gene68034:intron | 45.0% | |
| !! | AACGTATTGGCTGTTGCTAC+TGG | - | chr5.3:12374555-12374574 | MS.gene68034:CDS | 45.0% |
| !! | AGTTTTCTGTGCTGCTGATG+AGG | - | chr5.3:12373035-12373054 | MS.gene68034:CDS | 45.0% |
| !! | GTTGGTGGTAAAAGAACGCA+TGG | - | chr5.3:12373816-12373835 | MS.gene68034:intron | 45.0% |
| CTGTCGTGCTTGTGATGAGA+AGG | - | chr5.3:12373065-12373084 | MS.gene68034:intron | 50.0% | |
| GACATATGTGAGAATGCCCC+TGG | - | chr5.3:12373643-12373662 | MS.gene68034:intron | 50.0% | |
| GATCTAGAGGTTGTGAAGCC+GGG | + | chr5.3:12374229-12374248 | None:intergenic | 50.0% | |
| GCTTCACAACCTCTAGATCC+AGG | - | chr5.3:12374230-12374249 | MS.gene68034:intron | 50.0% | |
| GGATCTAGAGGTTGTGAAGC+CGG | + | chr5.3:12374230-12374249 | None:intergenic | 50.0% | |
| GTGACTGCCTCACACATTCA+AGG | + | chr5.3:12373931-12373950 | None:intergenic | 50.0% | |
| TTCTCACATATGTCGCACCG+CGG | + | chr5.3:12373637-12373656 | None:intergenic | 50.0% | |
| GCCGGGTTGTCTGCATTACT+AGG | + | chr5.3:12374212-12374231 | None:intergenic | 55.0% | |
| !! | GGTTCTGAAGTTGGAACCGG+AGG | + | chr5.3:12374326-12374345 | None:intergenic | 55.0% |
| CAAGTCCGAGTGACGTGCCG+CGG | - | chr5.3:12373617-12373636 | MS.gene68034:intron | 65.0% | |
| TCGCACCGCGGCACGTCACT+CGG | + | chr5.3:12373625-12373644 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 12372994 | 12374587 | 12372994 | ID=MS.gene68034 |
| chr5.3 | mRNA | 12372994 | 12374587 | 12372994 | ID=MS.gene68034.t1;Parent=MS.gene68034 |
| chr5.3 | exon | 12374495 | 12374587 | 12374495 | ID=MS.gene68034.t1.exon1;Parent=MS.gene68034.t1 |
| chr5.3 | CDS | 12374495 | 12374587 | 12374495 | ID=cds.MS.gene68034.t1;Parent=MS.gene68034.t1 |
| chr5.3 | exon | 12373917 | 12374013 | 12373917 | ID=MS.gene68034.t1.exon2;Parent=MS.gene68034.t1 |
| chr5.3 | CDS | 12373917 | 12374013 | 12373917 | ID=cds.MS.gene68034.t1;Parent=MS.gene68034.t1 |
| chr5.3 | exon | 12373712 | 12373827 | 12373712 | ID=MS.gene68034.t1.exon3;Parent=MS.gene68034.t1 |
| chr5.3 | CDS | 12373712 | 12373827 | 12373712 | ID=cds.MS.gene68034.t1;Parent=MS.gene68034.t1 |
| chr5.3 | exon | 12373142 | 12373387 | 12373142 | ID=MS.gene68034.t1.exon4;Parent=MS.gene68034.t1 |
| chr5.3 | CDS | 12373142 | 12373387 | 12373142 | ID=cds.MS.gene68034.t1;Parent=MS.gene68034.t1 |
| chr5.3 | exon | 12372994 | 12373059 | 12372994 | ID=MS.gene68034.t1.exon5;Parent=MS.gene68034.t1 |
| chr5.3 | CDS | 12372994 | 12373059 | 12372994 | ID=cds.MS.gene68034.t1;Parent=MS.gene68034.t1 |
| Gene Sequence |
| Protein sequence |
