AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010603

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010603.t1 MTR_3g048950 95.158 537 23 1 1 534 1 537 0.0 1013
MS.gene010603.t1 MTR_2g010180 33.937 442 253 10 87 519 179 590 3.06e-48 177
MS.gene010603.t1 MTR_2g010180 33.864 440 252 10 87 517 193 602 4.28e-48 176
MS.gene010603.t1 MTR_2g010180 33.864 440 252 10 87 517 179 588 5.55e-48 176
MS.gene010603.t1 MTR_3g096980 30.388 464 267 12 75 523 174 596 2.99e-45 168
MS.gene010603.t1 MTR_8g094740 30.549 455 261 12 84 523 183 597 6.42e-41 156
MS.gene010603.t1 MTR_8g080890 32.982 285 182 5 43 321 45 326 5.83e-35 138
MS.gene010603.t1 MTR_8g080870 26.459 514 283 16 43 517 15 472 2.22e-33 133
MS.gene010603.t1 MTR_8g094740 30.513 390 230 9 84 469 183 535 4.30e-33 133
MS.gene010603.t1 MTR_8g080840 28.686 373 231 7 5 361 22 375 1.69e-32 131
MS.gene010603.t1 MTR_4g074030 26.119 536 299 16 34 528 29 508 7.07e-32 129
MS.gene010603.t1 MTR_8g097220 29.904 311 203 6 17 321 21 322 1.26e-31 128
MS.gene010603.t1 MTR_8g080880 32.168 286 183 5 43 321 44 325 4.41e-31 127
MS.gene010603.t1 MTR_8g095600 31.020 245 153 4 40 279 163 396 1.17e-28 119
MS.gene010603.t1 MTR_8g095600 31.020 245 153 4 40 279 163 396 2.96e-28 119
MS.gene010603.t1 MTR_8g095600 31.020 245 153 4 40 279 179 412 3.82e-28 119
MS.gene010603.t1 MTR_8g095600 31.020 245 153 4 40 279 163 396 4.07e-28 119
MS.gene010603.t1 MTR_1g082750 46.429 112 60 0 138 249 63 174 1.52e-22 100
MS.gene010603.t1 MTR_4g094205 46.602 103 55 0 148 250 119 221 1.12e-19 92.8
MS.gene010603.t1 MTR_8g107280 39.640 111 67 0 140 250 101 211 2.55e-11 66.6
MS.gene010603.t1 MTR_8g107280 39.640 111 67 0 140 250 101 211 3.24e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010603.t1 AT3G25660 72.998 537 135 4 3 531 1 535 0.0 761
MS.gene010603.t1 AT5G64440 29.158 487 295 12 45 517 139 589 1.41e-46 172
MS.gene010603.t1 AT4G34880 27.677 495 296 15 43 517 48 500 2.46e-28 119
MS.gene010603.t1 AT5G07360 30.451 266 170 4 15 275 181 436 3.22e-28 119
MS.gene010603.t1 AT5G07360 30.451 266 170 4 15 275 181 436 3.22e-28 119
MS.gene010603.t1 AT5G07360 30.451 266 163 5 15 275 181 429 1.04e-26 114
MS.gene010603.t1 AT1G08980 45.299 117 64 0 138 254 64 180 5.66e-22 99.0
MS.gene010603.t1 AT5G09420 34.682 173 107 3 138 310 107 273 9.28e-19 90.1
MS.gene010603.t1 AT4G34880 23.780 492 279 15 40 517 45 454 1.78e-18 88.6
MS.gene010603.t1 AT3G17970 40.909 110 65 0 141 250 97 206 5.71e-16 81.3
MS.gene010603.t1 AT3G17970 41.905 105 61 0 146 250 102 206 6.98e-16 81.3

Find 187 sgRNAs with CRISPR-Local

Find 447 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATAAGGAATAGCTTTA+AGG 0.196302 5.1:+12895515 MS.gene010603:CDS
CCTTCAGCTGCTTATAAAAT+TGG 0.204129 5.1:+12895579 MS.gene010603:CDS
CACTGAAGCTTCTGCTTATC+AGG 0.236597 5.1:+12892221 MS.gene010603:CDS
CTTGATGCCATTGGCTGCTT+TGG 0.241283 5.1:+12894016 MS.gene010603:CDS
GGAGGTGCGGTGGCAGGTGG+GGG 0.254055 5.1:-12891814 None:intergenic
GGTTCATCGGTTGCTGATGC+TGG 0.274044 5.1:+12894037 MS.gene010603:CDS
CCAACCCGTGGGATGTTTCC+AGG 0.279284 5.1:+12893813 MS.gene010603:CDS
CTTAAAGCTATTCCTTATAA+TGG 0.283232 5.1:-12895514 None:intergenic
GAGGGAGGTGCGGTGGCAGG+TGG 0.318193 5.1:-12891817 None:intergenic
CCCTTGAAAGGTCTGAGAAT+TGG 0.320152 5.1:+12894378 MS.gene010603:CDS
TGTTGTTGGGAAGACGAATA+TGG 0.330954 5.1:+12892176 MS.gene010603:CDS
CCTGTTGGCCTGCAAATGAT+TGG 0.334314 5.1:+12896530 MS.gene010603:CDS
GGGAGGTGCGGTGGCAGGTG+GGG 0.334557 5.1:-12891815 None:intergenic
TATGGACGTGTCTCAAGATT+TGG 0.338893 5.1:+12893971 MS.gene010603:CDS
TGTCTCGCTATGATGGTATT+AGG 0.343270 5.1:+12894707 MS.gene010603:CDS
TGGTGTTCTTGTTGCTGTTA+AGG 0.344765 5.1:+12892041 MS.gene010603:CDS
GAGGAAATTGGTCCTCTTGC+TGG 0.355923 5.1:+12892021 MS.gene010603:CDS
CCATGTGGATTTATTGAGAA+TGG 0.359058 5.1:+12896494 MS.gene010603:CDS
TGTCTCAAGATTTGGACTTA+TGG 0.369848 5.1:+12893979 MS.gene010603:CDS
GGGGTTCGGTGAGACGGAGG+TGG 0.370709 5.1:-12891915 None:intergenic
ATCTCTGCCGGCGAGGAAAT+TGG 0.370965 5.1:+12892009 MS.gene010603:CDS
CGGCAGAGATTCTGCGGTCT+AGG 0.376444 5.1:-12891996 None:intergenic
GATTCCCGAGCCAAAGGGTT+AGG 0.376718 5.1:+12894917 MS.gene010603:CDS
AGGGAGGTGCGGTGGCAGGT+GGG 0.381564 5.1:-12891816 None:intergenic
AAAGAGTGGAACGTGGAGTT+TGG 0.381955 5.1:-12891747 None:intergenic
ACCAATTCTCAGACCTTTCA+AGG 0.382570 5.1:-12894379 None:intergenic
CGGAGAGGGAGTTGGTGAGA+AGG 0.384523 5.1:-12891864 None:intergenic
GGTGGAGGAAGGAACGGAGG+TGG 0.388259 5.1:-12891936 None:intergenic
ATGCTGCACCAATCATTTGC+AGG 0.388800 5.1:-12896538 None:intergenic
AGTGGTCAGAAGGGAGGTGG+AGG 0.391600 5.1:-12891951 None:intergenic
AAGACGAATATGGATGAGTT+TGG 0.396095 5.1:+12892186 MS.gene010603:CDS
CATTGGCTGCTTTGGTTCAT+CGG 0.403088 5.1:+12894024 MS.gene010603:CDS
GAGTTGGGTGGGATTGTTGT+TGG 0.403136 5.1:+12892162 MS.gene010603:CDS
AACAGGTGAGAACCATTATA+AGG 0.404504 5.1:+12895502 MS.gene010603:intron
ATACTTCTCCATGCAATTGC+TGG 0.405414 5.1:+12894061 MS.gene010603:CDS
GGAGGTGGGTGAGGTGGGAT+TGG 0.405799 5.1:-12891900 None:intergenic
GGAGAGGGAGTTGGTGAGAA+GGG 0.408597 5.1:-12891863 None:intergenic
GAAGGAACGGAGGTGGGGTT+CGG 0.415482 5.1:-12891929 None:intergenic
TGAGAGGGAGGTGCGGTGGC+AGG 0.415744 5.1:-12891820 None:intergenic
AACTGCAGCTGCCGATCCTC+CGG 0.421581 5.1:-12893852 None:intergenic
AGTTGGGTGGGATTGTTGTT+GGG 0.424283 5.1:+12892163 MS.gene010603:CDS
CCAATCATTTGCAGGCCAAC+AGG 0.424765 5.1:-12896530 None:intergenic
CGGTGAGACGGAGGTGGGTG+AGG 0.430799 5.1:-12891909 None:intergenic
CACCATCTTCAATAGTTTCA+CGG 0.431389 5.1:-12894407 None:intergenic
GTGGAGGAAGGAACGGAGGT+GGG 0.435354 5.1:-12891935 None:intergenic
GGGAGTGGTCAGAAGGGAGG+TGG 0.436737 5.1:-12891954 None:intergenic
TGAGACGGAGGTGGGTGAGG+TGG 0.437154 5.1:-12891906 None:intergenic
GAGGTGCGGTGGCAGGTGGG+GGG 0.437698 5.1:-12891813 None:intergenic
TGGGATGTTTCCAGGGTGCC+AGG 0.440289 5.1:+12893821 MS.gene010603:CDS
GATCCTCCGGATGATCCTCC+TGG 0.440465 5.1:-12893839 None:intergenic
TACAGATTTGTTCCACCAAT+CGG 0.443443 5.1:+12897857 MS.gene010603:CDS
CTAGCTCATCAGCATAAACT+TGG 0.445051 5.1:-12894880 None:intergenic
GGAGGTGGAGGAAGGAACGG+AGG 0.445202 5.1:-12891939 None:intergenic
GTAGGTTTGAAGCCAACATA+TGG 0.451615 5.1:+12893953 MS.gene010603:CDS
GGGGTGTGTAAGAGTAGCTT+GGG 0.452977 5.1:-12891794 None:intergenic
GATGAGCTAGACTCTCTCTA+TGG 0.453282 5.1:+12894893 MS.gene010603:CDS
TTAAAATGAGATAGAAAGTT+GGG 0.454413 5.1:-12894330 None:intergenic
GAGCTGATAGCGTTGAATAA+CGG 0.457511 5.1:+12897879 MS.gene010603:CDS
GGGACATATGCCCTTTCAGC+TGG 0.466577 5.1:+12895114 MS.gene010603:CDS
CAGGTAAATGTCAACCTAGC+TGG 0.469971 5.1:+12896452 MS.gene010603:intron
TACCTCAGAACCTAACCCTT+TGG 0.473794 5.1:-12894927 None:intergenic
GAGACGGAGGTGGGTGAGGT+GGG 0.474465 5.1:-12891905 None:intergenic
GTATCGTTGGGAAGTGATAC+TGG 0.476953 5.1:+12893893 MS.gene010603:CDS
GGGTGAGGTGGGATTGGATG+AGG 0.480176 5.1:-12891894 None:intergenic
TCCAACTTGTCTCGCTATGA+TGG 0.480589 5.1:+12894700 MS.gene010603:CDS
GATGAGGTCGGTGGCGGAGA+GGG 0.480626 5.1:-12891878 None:intergenic
GTGAAGAGAGTTAAGGAGTT+GGG 0.481622 5.1:+12892147 MS.gene010603:CDS
CGGCAGCTGCAGTTTCTGCC+AGG 0.482175 5.1:+12893861 MS.gene010603:CDS
TTCACCGCCGTCGCATCAAA+AGG 0.483739 5.1:-12892129 None:intergenic
GAGTAGCTTGGGTGGATGAT+GGG 0.484757 5.1:-12891783 None:intergenic
GTGTGTAAGAGTAGCTTGGG+TGG 0.486398 5.1:-12891791 None:intergenic
GTTAAAATGAGATAGAAAGT+TGG 0.486758 5.1:-12894331 None:intergenic
CAACGATACAACACACTGCC+TGG 0.490331 5.1:-12893879 None:intergenic
GTCGGTGGCGGAGAGGGAGT+TGG 0.490976 5.1:-12891872 None:intergenic
AGGGTGCCAGGAGGATCATC+CGG 0.492708 5.1:+12893833 MS.gene010603:CDS
GAATAGCTTTAAGGAAGCAC+TGG 0.494423 5.1:+12895524 MS.gene010603:CDS
GAATATGGATGAGTTTGGTA+TGG 0.494732 5.1:+12892191 MS.gene010603:CDS
ATTGAAGATGGTGTTGATGC+TGG 0.494844 5.1:+12894417 MS.gene010603:CDS
AGTTGGTGAGAAGGGAGTGA+CGG 0.496681 5.1:-12891855 None:intergenic
AGAGTAGCTTGGGTGGATGA+TGG 0.500080 5.1:-12891784 None:intergenic
GGTGGGGTTCGGTGAGACGG+AGG 0.501873 5.1:-12891918 None:intergenic
AAGGGAGGTGGAGGAAGGAA+CGG 0.501951 5.1:-12891942 None:intergenic
TAAGCAGCTGAAGGAGCTGC+AGG 0.503173 5.1:-12895570 None:intergenic
GGATTGGATGAGGTCGGTGG+CGG 0.503997 5.1:-12891884 None:intergenic
TGCTGGCAACCCAAGCGAAA+AGG 0.504879 5.1:-12894647 None:intergenic
GGAGGTGGGGTTCGGTGAGA+CGG 0.506358 5.1:-12891921 None:intergenic
GTGATACTGGTGGAAGTATG+AGG 0.508405 5.1:+12893906 MS.gene010603:CDS
AGAACCTAACCCTTTGGCTC+GGG 0.508452 5.1:-12894921 None:intergenic
CCTAGCTGGACTACCTGCCT+TGG 0.511239 5.1:+12896466 MS.gene010603:CDS
GGGTTCGGTGAGACGGAGGT+GGG 0.511763 5.1:-12891914 None:intergenic
CGATGAGGGAGTGGTCAGAA+GGG 0.512463 5.1:-12891960 None:intergenic
ACGCTATCAGCTCCGATTGG+TGG 0.515905 5.1:-12897869 None:intergenic
ATCATAGTAACCAGCTGAAA+GGG 0.518202 5.1:-12895124 None:intergenic
TAGCTTGGGTGGATGATGGG+AGG 0.520873 5.1:-12891780 None:intergenic
TGGTGAGAAGGGAGTGACGG+AGG 0.521192 5.1:-12891852 None:intergenic
GTTCATCGGTTGCTGATGCT+GGG 0.522970 5.1:+12894038 MS.gene010603:CDS
TGTTAAGGATAATATTTGTA+CGG 0.523699 5.1:+12892056 MS.gene010603:CDS
TGGAGGAAGGAACGGAGGTG+GGG 0.527467 5.1:-12891934 None:intergenic
ACGGAGGGTGAGAATTTGAG+AGG 0.528139 5.1:-12891836 None:intergenic
ACGGCTGACATGCCGTCCAC+TGG 0.529078 5.1:+12892075 MS.gene010603:CDS
AGGAGGATCATCCGGAGGAT+CGG 0.529125 5.1:+12893841 MS.gene010603:CDS
TTGGAAAGTAAGCCCTTGAA+AGG 0.529759 5.1:+12894366 MS.gene010603:CDS
CAGGCAGTGTGTTGTATCGT+TGG 0.530074 5.1:+12893880 MS.gene010603:CDS
TTTATTGAGAATGGACCGAC+AGG 0.531528 5.1:+12896503 MS.gene010603:CDS
GTCAGAAGGGAGGTGGAGGA+AGG 0.531740 5.1:-12891947 None:intergenic
GCGATGAGGGAGTGGTCAGA+AGG 0.535504 5.1:-12891961 None:intergenic
ACCATCATAGCGAGACAAGT+TGG 0.538119 5.1:-12894701 None:intergenic
CATCATAGTAACCAGCTGAA+AGG 0.540452 5.1:-12895125 None:intergenic
ATGGAGATTCCCGAGCCAAA+GGG 0.540501 5.1:+12894912 MS.gene010603:CDS
CCAATTCTCAGACCTTTCAA+GGG 0.542138 5.1:-12894378 None:intergenic
GGTGAGAAGGGAGTGACGGA+GGG 0.542284 5.1:-12891851 None:intergenic
CAACCCGTGGGATGTTTCCA+GGG 0.543202 5.1:+12893814 MS.gene010603:CDS
TATCATGACCAGCAATTGCA+TGG 0.543365 5.1:-12894069 None:intergenic
CTTGAGACACGTCCATATGT+TGG 0.543787 5.1:-12893965 None:intergenic
AAGAGAGTTAAGGAGTTGGG+TGG 0.544145 5.1:+12892150 MS.gene010603:CDS
GTCATGTGCTTGAGCGATGA+GGG 0.545346 5.1:-12891974 None:intergenic
CAGAACCTAACCCTTTGGCT+CGG 0.546221 5.1:-12894922 None:intergenic
GATCCTTTGGCTATGTATGC+TGG 0.549623 5.1:+12895700 MS.gene010603:CDS
AATATGGATGAGTTTGGTAT+GGG 0.549939 5.1:+12892192 MS.gene010603:CDS
GCTGACATGCCGTCCACTGG+TGG 0.550639 5.1:+12892078 MS.gene010603:CDS
AGAGAGTTAAGGAGTTGGGT+GGG 0.551590 5.1:+12892151 MS.gene010603:CDS
ATCCGTGAAACTATTGAAGA+TGG 0.552239 5.1:+12894405 MS.gene010603:CDS
AGCTTGGGTGGATGATGGGA+GGG 0.554935 5.1:-12891779 None:intergenic
CCACATGGTAAAACCAAGGC+AGG 0.555507 5.1:-12896479 None:intergenic
AACTCATACTTGCTTACTTG+AGG 0.556320 5.1:-12894104 None:intergenic
GGTGGATCGAGGATACTTGA+GGG 0.557902 5.1:+12892096 MS.gene010603:CDS
GAGAATTTGAGAGGGAGGTG+CGG 0.558307 5.1:-12891827 None:intergenic
TATGGAGATTCCCGAGCCAA+AGG 0.558471 5.1:+12894911 MS.gene010603:CDS
GCAGGGAGAGCTGCTGAGAG+TGG 0.563133 5.1:+12897805 MS.gene010603:intron
GATTGGTGCAGCATTTAATG+AGG 0.564316 5.1:+12896547 MS.gene010603:CDS
ATATTACAAACGAGCACAGC+AGG 0.567788 5.1:+12895149 MS.gene010603:CDS
CCAAGGCAGGTAGTCCAGCT+AGG 0.568026 5.1:-12896466 None:intergenic
AGGCAGTGTGTTGTATCGTT+GGG 0.568441 5.1:+12893881 MS.gene010603:CDS
CGGAGGGTGAGAATTTGAGA+GGG 0.568560 5.1:-12891835 None:intergenic
TGGTGGAAGTATGAGGCAGC+CGG 0.571787 5.1:+12893913 MS.gene010603:CDS
AGCCAAAGGGTTAGGTTCTG+AGG 0.574572 5.1:+12894925 MS.gene010603:CDS
CAGGGAGAGCTGCTGAGAGT+GGG 0.575596 5.1:+12897806 MS.gene010603:intron
GTGCTTGAGCGATGAGGGAG+TGG 0.579624 5.1:-12891969 None:intergenic
GACGGCGGTGAAGAGAGTTA+AGG 0.579689 5.1:+12892140 MS.gene010603:CDS
GGACCGACAGGGCTTCCTGT+TGG 0.581994 5.1:+12896515 MS.gene010603:CDS
AGCAGCTGAAGGAGCTGCAG+GGG 0.585773 5.1:-12895568 None:intergenic
GGATGATCCTCCTGGCACCC+TGG 0.587626 5.1:-12893831 None:intergenic
GAGGTGGGATTGGATGAGGT+CGG 0.587835 5.1:-12891890 None:intergenic
CTGATAAGCAGAAGCTTCAG+TGG 0.588296 5.1:-12892220 None:intergenic
AAGAGGACCAATTTCCTCGC+CGG 0.588428 5.1:-12892016 None:intergenic
GGTGAAGAGAGTTAAGGAGT+TGG 0.591063 5.1:+12892146 MS.gene010603:CDS
TCAACGCTATCAGCTCCGAT+TGG 0.591245 5.1:-12897872 None:intergenic
CGATGAACCAAAGCAGCCAA+TGG 0.591677 5.1:-12894023 None:intergenic
GGCACCCTGGAAACATCCCA+CGG 0.592300 5.1:-12893818 None:intergenic
GAGGGAGAAGCGTGAAAGAG+TGG 0.593307 5.1:-12891761 None:intergenic
TCATACTTGCTTACTTGAGG+TGG 0.595066 5.1:-12894101 None:intergenic
GCGTCATCACTTGATGCCAT+TGG 0.595721 5.1:+12894007 MS.gene010603:CDS
GTGGGATTGGATGAGGTCGG+TGG 0.596179 5.1:-12891887 None:intergenic
AATAGGTGACTGCCAACCCG+TGG 0.597933 5.1:+12893801 MS.gene010603:intron
CCTGGAAACATCCCACGGGT+TGG 0.599862 5.1:-12893813 None:intergenic
TGAGGGAGTGGTCAGAAGGG+AGG 0.603180 5.1:-12891957 None:intergenic
GGCAACCCAAGCGAAAAGGA+CGG 0.606693 5.1:-12894643 None:intergenic
GGAACGTGGAGTTTGGAGTG+TGG 0.608311 5.1:-12891740 None:intergenic
CCTCGCCGGCAGAGATTCTG+CGG 0.609604 5.1:-12892002 None:intergenic
GGATGAGGTCGGTGGCGGAG+AGG 0.610120 5.1:-12891879 None:intergenic
TGGTGGATCGAGGATACTTG+AGG 0.610399 5.1:+12892095 MS.gene010603:CDS
GCAACAAGAACACCAGCAAG+AGG 0.610406 5.1:-12892033 None:intergenic
AAAGCGAGGACATAGTATGC+TGG 0.610724 5.1:-12894664 None:intergenic
AGGCCAACAGGAAGCCCTGT+CGG 0.612914 5.1:-12896518 None:intergenic
GCACCCTGGAAACATCCCAC+GGG 0.614008 5.1:-12893817 None:intergenic
AAGCAGCTGAAGGAGCTGCA+GGG 0.619430 5.1:-12895569 None:intergenic
TGCCGTCCACTGGTGGATCG+AGG 0.620221 5.1:+12892085 MS.gene010603:CDS
CTAGACCGCAGAATCTCTGC+CGG 0.621592 5.1:+12891997 MS.gene010603:CDS
ATCCTCGATCCACCAGTGGA+CGG 0.622376 5.1:-12892087 None:intergenic
GGTCATGTGCTTGAGCGATG+AGG 0.632305 5.1:-12891975 None:intergenic
ATATGGATGAGTTTGGTATG+GGG 0.639425 5.1:+12892193 MS.gene010603:CDS
AATTTGAGAGGGAGGTGCGG+TGG 0.644753 5.1:-12891824 None:intergenic
ATTAGGATGCTCTGTGAACG+AGG 0.648039 5.1:+12894482 MS.gene010603:CDS
AGGGTGAGAATTTGAGAGGG+AGG 0.648068 5.1:-12891832 None:intergenic
CCATTCTCAATAAATCCACA+TGG 0.649598 5.1:-12896494 None:intergenic
TCACCAGCATACATAGCCAA+AGG 0.651194 5.1:-12895703 None:intergenic
CCGCAGAATCTCTGCCGGCG+AGG 0.660790 5.1:+12892002 MS.gene010603:CDS
AAGTATCCTCGATCCACCAG+TGG 0.660887 5.1:-12892091 None:intergenic
ATAGGTGACTGCCAACCCGT+GGG 0.663939 5.1:+12893802 MS.gene010603:intron
TTATTGAGAATGGACCGACA+GGG 0.664505 5.1:+12896504 MS.gene010603:CDS
AAGATGATTCAGACAAAGCG+AGG 0.664996 5.1:-12894678 None:intergenic
ACCGCCGTCGCATCAAAAGG+AGG 0.665875 5.1:-12892126 None:intergenic
AAGCGTGAAAGAGTGGAACG+TGG 0.670786 5.1:-12891754 None:intergenic
GATGTTTCCAGGGTGCCAGG+AGG 0.670862 5.1:+12893824 MS.gene010603:CDS
AAATCCACATGGTAAAACCA+AGG 0.672604 5.1:-12896483 None:intergenic
GTGCCAGGAGGATCATCCGG+AGG 0.694596 5.1:+12893836 MS.gene010603:CDS
TCGTTGGGAAGTGATACTGG+TGG 0.795744 5.1:+12893896 MS.gene010603:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAACAACATAAATAT+AGG + chr5.1:12896192-12896211 MS.gene010603:intron 10.0%
!!! TGATTAATTAAGATATTTTT+TGG - chr5.1:12895975-12895994 None:intergenic 10.0%
!!! TTCTATTTTTATTTTTTTCA+AGG - chr5.1:12897394-12897413 None:intergenic 10.0%
!! AAACTTATTTCAGTTATAAA+TGG - chr5.1:12893755-12893774 None:intergenic 15.0%
!! AAATACAATACATACAAAAT+TGG - chr5.1:12895041-12895060 None:intergenic 15.0%
!! AACTTATTTCAGTTATAAAT+GGG - chr5.1:12893754-12893773 None:intergenic 15.0%
!! AAGGAAAAAAAAAAATGAAA+TGG - chr5.1:12892708-12892727 None:intergenic 15.0%
!! AATTGATTATCTATTATCTA+AGG - chr5.1:12895945-12895964 None:intergenic 15.0%
!! ATAATAGTATATTGGATTTA+TGG - chr5.1:12893080-12893099 None:intergenic 15.0%
!! ATAGTAAATGGTTAAATAAA+GGG + chr5.1:12892584-12892603 MS.gene010603:intron 15.0%
!! CATATATGTATTTATTGTAT+AGG - chr5.1:12896272-12896291 None:intergenic 15.0%
!! TACTAACTTAGAAATATAAA+AGG + chr5.1:12893047-12893066 MS.gene010603:intron 15.0%
!! TATCCAAAAACTAAAAAATA+AGG - chr5.1:12892872-12892891 None:intergenic 15.0%
!!! AACAATTTTTAAACTTTCTT+TGG - chr5.1:12896777-12896796 None:intergenic 15.0%
!!! ACTTTATTTTATGTATTTCT+TGG + chr5.1:12895180-12895199 MS.gene010603:intron 15.0%
!!! ATTTTAACCTAAAATAATGT+GGG + chr5.1:12897289-12897308 MS.gene010603:intron 15.0%
!!! CATTAATAAATCATTTTGTT+TGG + chr5.1:12894822-12894841 MS.gene010603:intron 15.0%
!!! TATTTTAACCTAAAATAATG+TGG + chr5.1:12897288-12897307 MS.gene010603:intron 15.0%
!!! TTATTTTTTTCAAGGAAAAA+AGG - chr5.1:12897386-12897405 None:intergenic 15.0%
!!! TTCATTTATTTTAGAAGTTT+GGG + chr5.1:12895448-12895467 MS.gene010603:intron 15.0%
!!! TTGAAAGTTTTAATACATTT+AGG + chr5.1:12892613-12892632 MS.gene010603:intron 15.0%
!!! TTTCATTTATTTTAGAAGTT+TGG + chr5.1:12895447-12895466 MS.gene010603:intron 15.0%
!! AAATGAAAAGGGTTAAATAA+CGG - chr5.1:12894598-12894617 None:intergenic 20.0%
!! AAGTATTTCATTCTTCTTAT+CGG + chr5.1:12895738-12895757 MS.gene010603:intron 20.0%
!! ACAGAATAAAATATTGTGTT+AGG - chr5.1:12894790-12894809 None:intergenic 20.0%
!! GATAGTAAATGGTTAAATAA+AGG + chr5.1:12892583-12892602 MS.gene010603:intron 20.0%
!! GATGTATTCAATGTTAATAA+TGG + chr5.1:12892908-12892927 MS.gene010603:intron 20.0%
!! GATGTTAGATAATAGTATAT+TGG - chr5.1:12893088-12893107 None:intergenic 20.0%
!! TAAATTCTCGTTATTAGTAA+TGG + chr5.1:12894162-12894181 MS.gene010603:intron 20.0%
!! TAACATCTAGTATTCAATAT+GGG + chr5.1:12893101-12893120 MS.gene010603:intron 20.0%
!! TAATGGAGATATCAAAATAA+GGG + chr5.1:12892925-12892944 MS.gene010603:intron 20.0%
!! TACTAATATTACAAACAACA+GGG - chr5.1:12893279-12893298 None:intergenic 20.0%
!! TATTAGTAATGAATATGAGA+AGG + chr5.1:12893291-12893310 MS.gene010603:intron 20.0%
!! TGTTAAGGATAATATTTGTA+CGG + chr5.1:12892056-12892075 MS.gene010603:CDS 20.0%
!! TGTTGAATTATAGAAAATAG+AGG + chr5.1:12896118-12896137 MS.gene010603:intron 20.0%
!! TTAAAATGAGATAGAAAGTT+GGG - chr5.1:12894333-12894352 None:intergenic 20.0%
!! TTAATTAATCAATAAGTGCA+GGG + chr5.1:12895984-12896003 MS.gene010603:intron 20.0%
!! TTACTAATATTACAAACAAC+AGG - chr5.1:12893280-12893299 None:intergenic 20.0%
!! TTTAGAAATCTTACAACATT+TGG - chr5.1:12894146-12894165 None:intergenic 20.0%
!!! AAAAATAGAATCATCCTTTT+TGG + chr5.1:12897404-12897423 MS.gene010603:intron 20.0%
!!! AATCAATAATGTAATTTGTC+AGG + chr5.1:12894302-12894321 MS.gene010603:intron 20.0%
!!! ATAATGGAGATATCAAAATA+AGG + chr5.1:12892924-12892943 MS.gene010603:intron 20.0%
!!! GCATTTTTTATTAGTCATTT+TGG + chr5.1:12892384-12892403 MS.gene010603:intron 20.0%
!!! TAATGTTTGCCTTTATTTAT+TGG + chr5.1:12896414-12896433 MS.gene010603:intron 20.0%
!!! TATTTTATGTATTTCTTGGT+GGG + chr5.1:12895184-12895203 MS.gene010603:intron 20.0%
!!! TGACCTTATTTTTTAGTTTT+TGG + chr5.1:12892866-12892885 MS.gene010603:intron 20.0%
!!! TGTTTGTTGTTTTTTATATC+CGG + chr5.1:12892746-12892765 MS.gene010603:intron 20.0%
!!! TTATTTTATGTATTTCTTGG+TGG + chr5.1:12895183-12895202 MS.gene010603:intron 20.0%
!!! TTCTCTTTTTAATACATTTC+AGG + chr5.1:12895071-12895090 MS.gene010603:intron 20.0%
!!! TTTACATTTTGCTTTAGATT+GGG + chr5.1:12897045-12897064 MS.gene010603:intron 20.0%
! AAAGAAACAATTACTATTGC+AGG - chr5.1:12895649-12895668 None:intergenic 25.0%
! AAAGTGAAAAAGAAAACTCT+AGG + chr5.1:12897008-12897027 MS.gene010603:intron 25.0%
! AAATAAATTCCAAGCCAAAA+AGG - chr5.1:12897421-12897440 None:intergenic 25.0%
! AATAATATATACTCGACACA+TGG - chr5.1:12896034-12896053 None:intergenic 25.0%
! AGACAATTAGTGTTAAATTG+AGG + chr5.1:12895810-12895829 MS.gene010603:intron 25.0%
! AGTCAAATTTATATAGGCTA+AGG + chr5.1:12896167-12896186 MS.gene010603:intron 25.0%
! ATAGTCTTTGTTCAATATGA+TGG + chr5.1:12894203-12894222 MS.gene010603:intron 25.0%
! ATCCTTCTCAATTTCAAATT+TGG + chr5.1:12894961-12894980 MS.gene010603:intron 25.0%
! CAATAATGTTCATATCACAA+TGG + chr5.1:12892970-12892989 MS.gene010603:intron 25.0%
! CTAACATCTAGTATTCAATA+TGG + chr5.1:12893100-12893119 MS.gene010603:intron 25.0%
! CTTAAAGCTATTCCTTATAA+TGG - chr5.1:12895517-12895536 None:intergenic 25.0%
! CTTAATTAATCAATAAGTGC+AGG + chr5.1:12895983-12896002 MS.gene010603:intron 25.0%
! GTATATTGGATTTATGGTAT+CGG - chr5.1:12893074-12893093 None:intergenic 25.0%
! GTTAAAATGAGATAGAAAGT+TGG - chr5.1:12894334-12894353 None:intergenic 25.0%
! GTTCATTGTTGAAAAGAAAT+TGG - chr5.1:12894282-12894301 None:intergenic 25.0%
! TAATCTCTCTCTAAATCTAA+TGG - chr5.1:12893542-12893561 None:intergenic 25.0%
! TACAGGTATATGCATATATA+AGG - chr5.1:12895005-12895024 None:intergenic 25.0%
! TATATTGGATTTATGGTATC+GGG - chr5.1:12893073-12893092 None:intergenic 25.0%
! TCATTTGTCCATTAACTTAA+AGG + chr5.1:12894612-12894631 MS.gene010603:intron 25.0%
! TGAAAAGAAAAATGATCCTT+TGG + chr5.1:12895687-12895706 MS.gene010603:CDS 25.0%
! TTGCAATTTCAATACATTCA+TGG - chr5.1:12892350-12892369 None:intergenic 25.0%
!! AAAATATTGTGTTAGGTTGT+GGG - chr5.1:12894783-12894802 None:intergenic 25.0%
!! AAGTTAATGGACAAATGAAA+AGG - chr5.1:12894610-12894629 None:intergenic 25.0%
!! ACGTCTATTTTACATGATAA+GGG - chr5.1:12896864-12896883 None:intergenic 25.0%
!! AGTTAATGGACAAATGAAAA+GGG - chr5.1:12894609-12894628 None:intergenic 25.0%
!! ATAGAACAAAAAAGTACACT+TGG - chr5.1:12897116-12897135 None:intergenic 25.0%
!! CATTATAAGGAATAGCTTTA+AGG + chr5.1:12895515-12895534 MS.gene010603:CDS 25.0%
!! CTGTAGTTTTTCTATAAACA+TGG - chr5.1:12897150-12897169 None:intergenic 25.0%
!! TAAAATATTGTGTTAGGTTG+TGG - chr5.1:12894784-12894803 None:intergenic 25.0%
!! TTGGATCATTTCTTTTATAC+AGG - chr5.1:12895022-12895041 None:intergenic 25.0%
!!! ATAAATCATTTTGTTTGGCT+TGG + chr5.1:12894827-12894846 MS.gene010603:intron 25.0%
!!! CTTTACATTTTGCTTTAGAT+TGG + chr5.1:12897044-12897063 MS.gene010603:intron 25.0%
!!! GTGAAAATGAGAATTTTGAT+GGG + chr5.1:12895093-12895112 MS.gene010603:CDS 25.0%
!!! TGAAAATGAGAATTTTGATG+GGG + chr5.1:12895094-12895113 MS.gene010603:CDS 25.0%
!!! TGTTTGTTTTGTTGATTTTG+AGG + chr5.1:12892777-12892796 MS.gene010603:intron 25.0%
AAAACATACTGAACTACATG+TGG + chr5.1:12897089-12897108 MS.gene010603:intron 30.0%
AAATGATGACTTAATTCGCT+AGG - chr5.1:12896087-12896106 None:intergenic 30.0%
AATACAAGACATGCAAAAAG+TGG + chr5.1:12893646-12893665 MS.gene010603:intron 30.0%
AATATGGATGAGTTTGGTAT+GGG + chr5.1:12892192-12892211 MS.gene010603:CDS 30.0%
AATTTCATGTGTGATATTCC+AGG - chr5.1:12896750-12896769 None:intergenic 30.0%
ACCTTCTCTATATCTAGATA+CGG + chr5.1:12894854-12894873 MS.gene010603:intron 30.0%
ATACAAGACATGCAAAAAGT+GGG + chr5.1:12893647-12893666 MS.gene010603:intron 30.0%
ATGGTCAAAGTTAACTAACT+TGG + chr5.1:12897237-12897256 MS.gene010603:intron 30.0%
ATTGAATTAAGTTTGTGAGC+AGG + chr5.1:12893370-12893389 MS.gene010603:intron 30.0%
ATTTCATGTGTGATATTCCA+GGG - chr5.1:12896749-12896768 None:intergenic 30.0%
CAAAACAAACAAACAAACAC+CGG - chr5.1:12892768-12892787 None:intergenic 30.0%
CAAGATTGAAAGTTGTCAAA+TGG + chr5.1:12897218-12897237 MS.gene010603:intron 30.0%
CACAATGGTTATGGAAATAA+GGG + chr5.1:12892985-12893004 MS.gene010603:intron 30.0%
CAGCAGAGTCAAATTTATAT+AGG + chr5.1:12896161-12896180 MS.gene010603:intron 30.0%
CATTTGACAACTTTCAATCT+TGG - chr5.1:12897220-12897239 None:intergenic 30.0%
CTAACATGCAATAATGCAAA+AGG - chr5.1:12895624-12895643 None:intergenic 30.0%
CTCAAAGCTCTATAAACTTT+AGG - chr5.1:12895897-12895916 None:intergenic 30.0%
CTCACTTCAAATTATGACTA+AGG - chr5.1:12892271-12892290 None:intergenic 30.0%
CTTATCATGTAAAATAGACG+TGG + chr5.1:12896863-12896882 MS.gene010603:intron 30.0%
GAGAAACCACCAATAAATAA+AGG - chr5.1:12896426-12896445 None:intergenic 30.0%
GATGCATATGTTCATTCAAT+AGG + chr5.1:12893784-12893803 MS.gene010603:intron 30.0%
GATTTAGAGAGAGATTATAG+AGG + chr5.1:12893545-12893564 MS.gene010603:intron 30.0%
GCAGAATGATAATTGCAAAT+TGG + chr5.1:12893423-12893442 MS.gene010603:intron 30.0%
GTAATGGTTATTCACTATGT+TGG + chr5.1:12894178-12894197 MS.gene010603:intron 30.0%
TAGATTTAGAGAGATTGTAG+AGG + chr5.1:12893489-12893508 MS.gene010603:intron 30.0%
TCACAATGGTTATGGAAATA+AGG + chr5.1:12892984-12893003 MS.gene010603:intron 30.0%
TGAAATTGAGAAGGATTAGA+AGG - chr5.1:12894957-12894976 None:intergenic 30.0%
TGACTGAATTCATGATCATT+GGG - chr5.1:12895237-12895256 None:intergenic 30.0%
TGTTCATATCACAATGGTTA+TGG + chr5.1:12892976-12892995 MS.gene010603:intron 30.0%
TTAGTCCCTAACATAATCTT+GGG - chr5.1:12892498-12892517 None:intergenic 30.0%
TTATGTGTGTTCTATGTAAC+AGG + chr5.1:12895485-12895504 MS.gene010603:intron 30.0%
TTTAGTCCCTAACATAATCT+TGG - chr5.1:12892499-12892518 None:intergenic 30.0%
TTTCCTTTATGAACTTACGT+AGG - chr5.1:12896980-12896999 None:intergenic 30.0%
! AAATTTGGCTGCAAGATTTT+CGG + chr5.1:12894976-12894995 MS.gene010603:intron 30.0%
! AACTGAAATAAGTTTTGCTC+AGG + chr5.1:12893760-12893779 MS.gene010603:intron 30.0%
! AGCCAAATTTGAAATTGAGA+AGG - chr5.1:12894966-12894985 None:intergenic 30.0%
! ATACATGCCCACATTATTTT+AGG - chr5.1:12897299-12897318 None:intergenic 30.0%
! ATCAATCCTGGGAATAATTT+TGG - chr5.1:12896723-12896742 None:intergenic 30.0%
! CAATAATGTAATTTGTCAGG+AGG + chr5.1:12894305-12894324 MS.gene010603:intron 30.0%
! CACGTCTATTTTACATGATA+AGG - chr5.1:12896865-12896884 None:intergenic 30.0%
! GGTGAAAATGAGAATTTTGA+TGG + chr5.1:12895092-12895111 MS.gene010603:intron 30.0%
! TGTGTTTTTCTTTTCCAGTT+TGG + chr5.1:12892805-12892824 MS.gene010603:intron 30.0%
! TGTTTGCCTTTATTTATTGG+TGG + chr5.1:12896417-12896436 MS.gene010603:intron 30.0%
! TTAACTAACTTGGTCTTTCT+GGG + chr5.1:12897247-12897266 MS.gene010603:intron 30.0%
! TTTTTCTTTTCCAGTTTGGA+CGG + chr5.1:12892809-12892828 MS.gene010603:intron 30.0%
!! GCATGTTGATTTATAAACGT+GGG + chr5.1:12896889-12896908 MS.gene010603:intron 30.0%
!! TACCTTTCTAAAGAGCATTA+AGG + chr5.1:12896655-12896674 MS.gene010603:intron 30.0%
!! TTTCTAAAGAGCATTAAGGA+GGG + chr5.1:12896659-12896678 MS.gene010603:intron 30.0%
!! TTTTAACTCTGCAAGTTCTT+TGG + chr5.1:12894347-12894366 MS.gene010603:CDS 30.0%
!!! ATTTTTTATTGTTGTTCCCC+TGG + chr5.1:12896952-12896971 MS.gene010603:intron 30.0%
!!! GGACTCAGCTTAATATTTTT+TGG + chr5.1:12895259-12895278 MS.gene010603:intron 30.0%
AAATCCACATGGTAAAACCA+AGG - chr5.1:12896486-12896505 None:intergenic 35.0%
AACAGGTGAGAACCATTATA+AGG + chr5.1:12895502-12895521 MS.gene010603:intron 35.0%
AACTCATACTTGCTTACTTG+AGG - chr5.1:12894107-12894126 None:intergenic 35.0%
AAGACGAATATGGATGAGTT+TGG + chr5.1:12892186-12892205 MS.gene010603:CDS 35.0%
AGACACATAAAGAACAAGAG+TGG - chr5.1:12895334-12895353 None:intergenic 35.0%
AGAGAGATTATAGAGGATCT+GGG + chr5.1:12893552-12893571 MS.gene010603:intron 35.0%
AGTTCTCCCAAGATTATGTT+AGG + chr5.1:12892489-12892508 MS.gene010603:intron 35.0%
ATAAAGGCAAACATTATGCC+CGG - chr5.1:12896410-12896429 None:intergenic 35.0%
ATATGGATGAGTTTGGTATG+GGG + chr5.1:12892193-12892212 MS.gene010603:CDS 35.0%
ATCATAGTAACCAGCTGAAA+GGG - chr5.1:12895127-12895146 None:intergenic 35.0%
ATCCGTGAAACTATTGAAGA+TGG + chr5.1:12894405-12894424 MS.gene010603:CDS 35.0%
ATGATCATGAATTCAGTCAC+TGG + chr5.1:12895238-12895257 MS.gene010603:intron 35.0%
ATGTCACCAAAATTATTCCC+AGG + chr5.1:12896714-12896733 MS.gene010603:intron 35.0%
ATTGACGAGGGGTTAAATAT+AGG + chr5.1:12892518-12892537 MS.gene010603:intron 35.0%
CACCATCTTCAATAGTTTCA+CGG - chr5.1:12894410-12894429 None:intergenic 35.0%
CAGGAGTTCAACATTTGTTT+GGG + chr5.1:12893389-12893408 MS.gene010603:intron 35.0%
CATCAAACAAACGTTTCCTT+AGG - chr5.1:12896697-12896716 None:intergenic 35.0%
CATTATCTCTTGTAGAACTC+AGG - chr5.1:12897325-12897344 None:intergenic 35.0%
CCAGGAAAACAAATCATCAA+CGG - chr5.1:12896803-12896822 None:intergenic 35.0%
CCATGTGGATTTATTGAGAA+TGG + chr5.1:12896494-12896513 MS.gene010603:CDS 35.0%
CCATTCTCAATAAATCCACA+TGG - chr5.1:12896497-12896516 None:intergenic 35.0%
CCTTCAGCTGCTTATAAAAT+TGG + chr5.1:12895579-12895598 MS.gene010603:CDS 35.0%
GAATATGGATGAGTTTGGTA+TGG + chr5.1:12892191-12892210 MS.gene010603:CDS 35.0%
GAGTTTGAGAGAAAAATGAG+TGG - chr5.1:12894512-12894531 None:intergenic 35.0%
GGAGATATCAAAATAAGGGA+TGG + chr5.1:12892929-12892948 MS.gene010603:intron 35.0%
GTACCTACGTAAGTTCATAA+AGG + chr5.1:12896974-12896993 MS.gene010603:intron 35.0%
GTATCTAGATATAGAGAAGG+TGG - chr5.1:12894855-12894874 None:intergenic 35.0%
GTGACTGAATTCATGATCAT+TGG - chr5.1:12895238-12895257 None:intergenic 35.0%
GTTCTCCCAAGATTATGTTA+GGG + chr5.1:12892490-12892509 MS.gene010603:intron 35.0%
GTTGTTTGTTCTCTGTATGT+TGG + chr5.1:12893675-12893694 MS.gene010603:intron 35.0%
TACAAGACATGCAAAAAGTG+GGG + chr5.1:12893648-12893667 MS.gene010603:intron 35.0%
TATGAGTTCTTCACTGTGTT+TGG + chr5.1:12894119-12894138 MS.gene010603:intron 35.0%
TCCGTATCTAGATATAGAGA+AGG - chr5.1:12894858-12894877 None:intergenic 35.0%
TCTTTGTCTTTGACATTTGC+AGG + chr5.1:12895664-12895683 MS.gene010603:intron 35.0%
TGAGCTGCGTAATAAAAGAA+CGG + chr5.1:12893201-12893220 MS.gene010603:intron 35.0%
TGAGGAATCATGATGATTGA+TGG + chr5.1:12893153-12893172 MS.gene010603:intron 35.0%
TGCATCACTATATGCATCAT+CGG - chr5.1:12893604-12893623 None:intergenic 35.0%
TGTCTCAAGATTTGGACTTA+TGG + chr5.1:12893979-12893998 MS.gene010603:CDS 35.0%
TTCGCTAGGATATTCCTTTA+TGG - chr5.1:12896073-12896092 None:intergenic 35.0%
TTGACGAGGGGTTAAATATA+GGG + chr5.1:12892519-12892538 MS.gene010603:intron 35.0%
TTGAGCTTACGTATTACTGT+TGG + chr5.1:12897177-12897196 MS.gene010603:intron 35.0%
TTGGTCCTGACTTTCAAATA+GGG + chr5.1:12892403-12892422 MS.gene010603:intron 35.0%
TTTGAGAGAAAAATGAGTGG+AGG - chr5.1:12894509-12894528 None:intergenic 35.0%
TTTGGTCCTGACTTTCAAAT+AGG + chr5.1:12892402-12892421 MS.gene010603:intron 35.0%
TTTGTTCTCTGTATGTTGGT+GGG + chr5.1:12893679-12893698 MS.gene010603:intron 35.0%
! ACAACAGGGCATTTCAAATT+TGG - chr5.1:12893265-12893284 None:intergenic 35.0%
! ATGATGATTGATGGTCTACT+TGG + chr5.1:12893162-12893181 MS.gene010603:intron 35.0%
! CAGTGACACCTTTAAGTTAA+TGG - chr5.1:12894623-12894642 None:intergenic 35.0%
! CCAATTTTATAAGCAGCTGA+AGG - chr5.1:12895582-12895601 None:intergenic 35.0%
! CTCCTTAATGCTCTTTAGAA+AGG - chr5.1:12896660-12896679 None:intergenic 35.0%
! GAGTTCTAGTTACTCCATAA+AGG + chr5.1:12896056-12896075 MS.gene010603:intron 35.0%
! GGTCTTTCTGGGTAAAATTT+TGG + chr5.1:12897258-12897277 MS.gene010603:intron 35.0%
! GTTAACTAACTTGGTCTTTC+TGG + chr5.1:12897246-12897265 MS.gene010603:intron 35.0%
! TACAGATTTGTTCCACCAAT+CGG + chr5.1:12897857-12897876 MS.gene010603:CDS 35.0%
! TGGCTTGGAATTTATTTGCA+GGG + chr5.1:12897424-12897443 MS.gene010603:intron 35.0%
! TTAGAAGTTTGGGATCTACA+AGG + chr5.1:12895458-12895477 MS.gene010603:intron 35.0%
! TTCTTTAAGAAACTATGCCC+AGG - chr5.1:12896821-12896840 None:intergenic 35.0%
! TTTTCTTTTCCAGTTTGGAC+GGG + chr5.1:12892810-12892829 MS.gene010603:intron 35.0%
!! AAGTTTATAGAGCTTTGAGC+AGG + chr5.1:12895898-12895917 MS.gene010603:intron 35.0%
!! CATTTTGCTTTAGATTGGGT+TGG + chr5.1:12897049-12897068 MS.gene010603:intron 35.0%
!! CGCATGTTGATTTATAAACG+TGG + chr5.1:12896888-12896907 MS.gene010603:intron 35.0%
!! CTTTCTAAAGAGCATTAAGG+AGG + chr5.1:12896658-12896677 MS.gene010603:intron 35.0%
!! GTGACGTAGTTGATAGTAAA+TGG + chr5.1:12892572-12892591 MS.gene010603:intron 35.0%
!! TTGGCTTGGAATTTATTTGC+AGG + chr5.1:12897423-12897442 MS.gene010603:intron 35.0%
!! TTGGTGGTTTCTCTTTTTAC+AGG + chr5.1:12896433-12896452 MS.gene010603:intron 35.0%
!!! CGTTGATGATTTGTTTTCCT+GGG + chr5.1:12896801-12896820 MS.gene010603:intron 35.0%
!!! GGCTATGGTTTTTTAGAGTT+TGG + chr5.1:12893704-12893723 MS.gene010603:intron 35.0%
!!! TAGAATCATCCTTTTTGGCT+TGG + chr5.1:12897409-12897428 MS.gene010603:intron 35.0%
AAGATGATTCAGACAAAGCG+AGG - chr5.1:12894681-12894700 None:intergenic 40.0%
ACCAATTCTCAGACCTTTCA+AGG - chr5.1:12894382-12894401 None:intergenic 40.0%
AGGGAGATGGTTAAAACCTA+AGG + chr5.1:12896678-12896697 MS.gene010603:intron 40.0%
AGGGATGGAGAAAAAGACTA+AGG + chr5.1:12892944-12892963 MS.gene010603:intron 40.0%
ATACTTCTCCATGCAATTGC+TGG + chr5.1:12894061-12894080 MS.gene010603:CDS 40.0%
ATATTACAAACGAGCACAGC+AGG + chr5.1:12895149-12895168 MS.gene010603:CDS 40.0%
ATGAACTTACGTAGGTACCA+GGG - chr5.1:12896972-12896991 None:intergenic 40.0%
CAACAAACAGAGACACACTA+CGG - chr5.1:12892735-12892754 None:intergenic 40.0%
CATCATAGTAACCAGCTGAA+AGG - chr5.1:12895128-12895147 None:intergenic 40.0%
CCAATTCTCAGACCTTTCAA+GGG - chr5.1:12894381-12894400 None:intergenic 40.0%
CTAGCTCATCAGCATAAACT+TGG - chr5.1:12894883-12894902 None:intergenic 40.0%
CTATGATGGTATTAGGTCAG+TGG + chr5.1:12894714-12894733 MS.gene010603:intron 40.0%
CTGCACCATAAAGCAATTGT+AGG - chr5.1:12893453-12893472 None:intergenic 40.0%
GAACGTCGATAAGACAACAT+AGG - chr5.1:12895423-12895442 None:intergenic 40.0%
GAACTTGCAGTTACTTAGGA+GGG + chr5.1:12896911-12896930 MS.gene010603:intron 40.0%
GAGAGAGATTATAGAGGATC+TGG + chr5.1:12893551-12893570 MS.gene010603:intron 40.0%
GATCGCCTACAATTGCTTTA+TGG + chr5.1:12893445-12893464 MS.gene010603:intron 40.0%
GATTGGTGCAGCATTTAATG+AGG + chr5.1:12896547-12896566 MS.gene010603:CDS 40.0%
GCAGGAGTTCAACATTTGTT+TGG + chr5.1:12893388-12893407 MS.gene010603:intron 40.0%
GCATCACTATATGCATCATC+GGG - chr5.1:12893603-12893622 None:intergenic 40.0%
GCTTACGTATTACTGTTGGT+AGG + chr5.1:12897181-12897200 MS.gene010603:intron 40.0%
GTGAAGAGAGTTAAGGAGTT+GGG + chr5.1:12892147-12892166 MS.gene010603:CDS 40.0%
GTTAGGGACTAAATTGACGA+GGG + chr5.1:12892506-12892525 MS.gene010603:intron 40.0%
GTTTGTTCTCTGTATGTTGG+TGG + chr5.1:12893678-12893697 MS.gene010603:intron 40.0%
TAGAGAGATTGTAGAGGATC+CGG + chr5.1:12893495-12893514 MS.gene010603:intron 40.0%
TATCATGACCAGCAATTGCA+TGG - chr5.1:12894072-12894091 None:intergenic 40.0%
TATGAACTTACGTAGGTACC+AGG - chr5.1:12896973-12896992 None:intergenic 40.0%
TATGGACGTGTCTCAAGATT+TGG + chr5.1:12893971-12893990 MS.gene010603:CDS 40.0%
TCATACTTGCTTACTTGAGG+TGG - chr5.1:12894104-12894123 None:intergenic 40.0%
TCTGGGTCAGTTGAAAATTG+TGG + chr5.1:12893569-12893588 MS.gene010603:intron 40.0%
TGAGTGCTCTCAAATCACTA+GGG - chr5.1:12892683-12892702 None:intergenic 40.0%
TGTCTCGCTATGATGGTATT+AGG + chr5.1:12894707-12894726 MS.gene010603:CDS 40.0%
TGTTAGGGACTAAATTGACG+AGG + chr5.1:12892505-12892524 MS.gene010603:intron 40.0%
TGTTGTTGGGAAGACGAATA+TGG + chr5.1:12892176-12892195 MS.gene010603:CDS 40.0%
TTAGGGACTAAATTGACGAG+GGG + chr5.1:12892507-12892526 MS.gene010603:intron 40.0%
TTATTGAGAATGGACCGACA+GGG + chr5.1:12896504-12896523 MS.gene010603:CDS 40.0%
TTGAGTGCTCTCAAATCACT+AGG - chr5.1:12892684-12892703 None:intergenic 40.0%
TTGGAAAGTAAGCCCTTGAA+AGG + chr5.1:12894366-12894385 MS.gene010603:CDS 40.0%
TTTATGGTGCAGTCTCTGTA+GGG + chr5.1:12893461-12893480 MS.gene010603:intron 40.0%
TTTATTGAGAATGGACCGAC+AGG + chr5.1:12896503-12896522 MS.gene010603:CDS 40.0%
! GTAGGTTTGAAGCCAACATA+TGG + chr5.1:12893953-12893972 MS.gene010603:CDS 40.0%
! TATGAGAAGGTATGAGTGAG+AGG + chr5.1:12893304-12893323 MS.gene010603:intron 40.0%
! TGGTGTTCTTGTTGCTGTTA+AGG + chr5.1:12892041-12892060 MS.gene010603:CDS 40.0%
!! AAGATGAAGCTCTAAACCAC+TGG - chr5.1:12896334-12896353 None:intergenic 40.0%
!! AGATGAAGCTCTAAACCACT+GGG - chr5.1:12896333-12896352 None:intergenic 40.0%
!! ATTGAAGATGGTGTTGATGC+TGG + chr5.1:12894417-12894436 MS.gene010603:CDS 40.0%
!! GAATAGCTTTAAGGAAGCAC+TGG + chr5.1:12895524-12895543 MS.gene010603:CDS 40.0%
!! TGATGCTGCTTCACATTTTG+AGG + chr5.1:12894458-12894477 MS.gene010603:CDS 40.0%
!!! CCGTTGATGATTTGTTTTCC+TGG + chr5.1:12896800-12896819 MS.gene010603:intron 40.0%
!!! GCTTCACATTTTGAGGCATT+AGG + chr5.1:12894465-12894484 MS.gene010603:CDS 40.0%
AAAGAGTGGAACGTGGAGTT+TGG - chr5.1:12891750-12891769 None:intergenic 45.0%
AAAGCGAGGACATAGTATGC+TGG - chr5.1:12894667-12894686 None:intergenic 45.0%
AAGAGAGTTAAGGAGTTGGG+TGG + chr5.1:12892150-12892169 MS.gene010603:CDS 45.0%
ACAACACCGCAAAAAGATGC+CGG - chr5.1:12893935-12893954 None:intergenic 45.0%
ACCATCATAGCGAGACAAGT+TGG - chr5.1:12894704-12894723 None:intergenic 45.0%
AGAGAGATTGTAGAGGATCC+GGG + chr5.1:12893496-12893515 MS.gene010603:intron 45.0%
AGAGAGTTAAGGAGTTGGGT+GGG + chr5.1:12892151-12892170 MS.gene010603:CDS 45.0%
AGGCAGTGTGTTGTATCGTT+GGG + chr5.1:12893881-12893900 MS.gene010603:CDS 45.0%
ATAACTAGTTGTGCACCCAG+TGG + chr5.1:12896315-12896334 MS.gene010603:intron 45.0%
ATGCTGCACCAATCATTTGC+AGG - chr5.1:12896541-12896560 None:intergenic 45.0%
ATTAGGATGCTCTGTGAACG+AGG + chr5.1:12894482-12894501 MS.gene010603:CDS 45.0%
ATTCCAGGGACAATCAATCC+TGG - chr5.1:12896735-12896754 None:intergenic 45.0%
CACTGAACTTCATGTTGACG+AGG + chr5.1:12896592-12896611 MS.gene010603:intron 45.0%
CACTGAAGCTTCTGCTTATC+AGG + chr5.1:12892221-12892240 MS.gene010603:CDS 45.0%
CAGGTAAATGTCAACCTAGC+TGG + chr5.1:12896452-12896471 MS.gene010603:intron 45.0%
CCCTTGAAAGGTCTGAGAAT+TGG + chr5.1:12894378-12894397 MS.gene010603:CDS 45.0%
CTCAGTTTACATGAGCATGC+CGG + chr5.1:12896388-12896407 MS.gene010603:intron 45.0%
CTGATAAGCAGAAGCTTCAG+TGG - chr5.1:12892223-12892242 None:intergenic 45.0%
CTTGAGACACGTCCATATGT+TGG - chr5.1:12893968-12893987 None:intergenic 45.0%
CTTTATGGTGCAGTCTCTGT+AGG + chr5.1:12893460-12893479 MS.gene010603:intron 45.0%
GAGTGAGAGGTGACAATATG+TGG + chr5.1:12893317-12893336 MS.gene010603:intron 45.0%
GAGTGGATGTATATCGTGTC+TGG - chr5.1:12895317-12895336 None:intergenic 45.0%
GATCCTTTGGCTATGTATGC+TGG + chr5.1:12895700-12895719 MS.gene010603:CDS 45.0%
GATGAGCTAGACTCTCTCTA+TGG + chr5.1:12894893-12894912 MS.gene010603:CDS 45.0%
GGAACTTGCAGTTACTTAGG+AGG + chr5.1:12896910-12896929 MS.gene010603:intron 45.0%
GGCATAAACCAGCAGTTATG+TGG - chr5.1:12895924-12895943 None:intergenic 45.0%
GGTGAAGAGAGTTAAGGAGT+TGG + chr5.1:12892146-12892165 MS.gene010603:CDS 45.0%
GTATCGTTGGGAAGTGATAC+TGG + chr5.1:12893893-12893912 MS.gene010603:CDS 45.0%
GTGGGAACTTGCAGTTACTT+AGG + chr5.1:12896907-12896926 MS.gene010603:intron 45.0%
TACCTCAGAACCTAACCCTT+TGG - chr5.1:12894930-12894949 None:intergenic 45.0%
TCACCAGCATACATAGCCAA+AGG - chr5.1:12895706-12895725 None:intergenic 45.0%
TCAGTTTACATGAGCATGCC+GGG + chr5.1:12896389-12896408 MS.gene010603:intron 45.0%
TCCAACTTGTCTCGCTATGA+TGG + chr5.1:12894700-12894719 MS.gene010603:CDS 45.0%
TGAACTTACGTAGGTACCAG+GGG - chr5.1:12896971-12896990 None:intergenic 45.0%
TTCCAGGGACAATCAATCCT+GGG - chr5.1:12896734-12896753 None:intergenic 45.0%
TTGGGCTAAGAAGACTTGAG+AGG - chr5.1:12895219-12895238 None:intergenic 45.0%
! AGTTGGGTGGGATTGTTGTT+GGG + chr5.1:12892163-12892182 MS.gene010603:CDS 45.0%
! CATTGGCTGCTTTGGTTCAT+CGG + chr5.1:12894024-12894043 MS.gene010603:CDS 45.0%
! GTGATACTGGTGGAAGTATG+AGG + chr5.1:12893906-12893925 MS.gene010603:CDS 45.0%
! TGTTAGGTTGTGGGTGTACT+TGG - chr5.1:12894774-12894793 None:intergenic 45.0%
! TTCTCTGTATGTTGGTGGGT+TGG + chr5.1:12893683-12893702 MS.gene010603:intron 45.0%
!! AAGAGCATTAAGGAGGGAGA+TGG + chr5.1:12896665-12896684 MS.gene010603:intron 45.0%
!!! GCATCTTTTTGCGGTGTTGT+AGG + chr5.1:12893935-12893954 MS.gene010603:CDS 45.0%
AAGAGGACCAATTTCCTCGC+CGG - chr5.1:12892019-12892038 None:intergenic 50.0%
AAGCGTGAAAGAGTGGAACG+TGG - chr5.1:12891757-12891776 None:intergenic 50.0%
AAGTATCCTCGATCCACCAG+TGG - chr5.1:12892094-12892113 None:intergenic 50.0%
ACGGAGGGTGAGAATTTGAG+AGG - chr5.1:12891839-12891858 None:intergenic 50.0%
ACTTGGACGAAGAGAGTGAG+AGG - chr5.1:12894757-12894776 None:intergenic 50.0%
AGAGACACACTACGGTGCAA+AGG - chr5.1:12892727-12892746 None:intergenic 50.0%
AGAGTAGCTTGGGTGGATGA+TGG - chr5.1:12891787-12891806 None:intergenic 50.0%
AGCCAAAGGGTTAGGTTCTG+AGG + chr5.1:12894925-12894944 MS.gene010603:CDS 50.0%
AGGGTGAGAATTTGAGAGGG+AGG - chr5.1:12891835-12891854 None:intergenic 50.0%
ATGGAGATTCCCGAGCCAAA+GGG + chr5.1:12894912-12894931 MS.gene010603:CDS 50.0%
ATGGGAGAGTCCACTAGTGT+GGG + chr5.1:12893119-12893138 MS.gene010603:intron 50.0%
CAACACTAACCCCACACTAG+TGG - chr5.1:12893132-12893151 None:intergenic 50.0%
CAACGATACAACACACTGCC+TGG - chr5.1:12893882-12893901 None:intergenic 50.0%
CAGAACCTAACCCTTTGGCT+CGG - chr5.1:12894925-12894944 None:intergenic 50.0%
CAGGCAGTGTGTTGTATCGT+TGG + chr5.1:12893880-12893899 MS.gene010603:CDS 50.0%
CCAATCATTTGCAGGCCAAC+AGG - chr5.1:12896533-12896552 None:intergenic 50.0%
CCACATGGTAAAACCAAGGC+AGG - chr5.1:12896482-12896501 None:intergenic 50.0%
CGATGAACCAAAGCAGCCAA+TGG - chr5.1:12894026-12894045 None:intergenic 50.0%
CGGAGGGTGAGAATTTGAGA+GGG - chr5.1:12891838-12891857 None:intergenic 50.0%
CTTGGACGAAGAGAGTGAGA+GGG - chr5.1:12894756-12894775 None:intergenic 50.0%
GAGAATTTGAGAGGGAGGTG+CGG - chr5.1:12891830-12891849 None:intergenic 50.0%
GAGGAAATTGGTCCTCTTGC+TGG + chr5.1:12892021-12892040 MS.gene010603:CDS 50.0%
GAGTAGCTTGGGTGGATGAT+GGG - chr5.1:12891786-12891805 None:intergenic 50.0%
GAGTTGGGTGGGATTGTTGT+TGG + chr5.1:12892162-12892181 MS.gene010603:CDS 50.0%
GCAACAAGAACACCAGCAAG+AGG - chr5.1:12892036-12892055 None:intergenic 50.0%
GCGTCATCACTTGATGCCAT+TGG + chr5.1:12894007-12894026 MS.gene010603:CDS 50.0%
GGGGTGTGTAAGAGTAGCTT+GGG - chr5.1:12891797-12891816 None:intergenic 50.0%
GGTGGATCGAGGATACTTGA+GGG + chr5.1:12892096-12892115 MS.gene010603:CDS 50.0%
GTCATGTGCTTGAGCGATGA+GGG - chr5.1:12891977-12891996 None:intergenic 50.0%
GTGCGCCCTATTTGAAAGTC+AGG - chr5.1:12892411-12892430 None:intergenic 50.0%
GTGTGTAAGAGTAGCTTGGG+TGG - chr5.1:12891794-12891813 None:intergenic 50.0%
TATGGAGATTCCCGAGCCAA+AGG + chr5.1:12894911-12894930 MS.gene010603:CDS 50.0%
TATGGGAGAGTCCACTAGTG+TGG + chr5.1:12893118-12893137 MS.gene010603:intron 50.0%
TCAACGCTATCAGCTCCGAT+TGG - chr5.1:12897875-12897894 None:intergenic 50.0%
TCGTTGGGAAGTGATACTGG+TGG + chr5.1:12893896-12893915 MS.gene010603:CDS 50.0%
TTCCCAGGATTGATTGTCCC+TGG + chr5.1:12896729-12896748 MS.gene010603:intron 50.0%
TTGGACGAAGAGAGTGAGAG+GGG - chr5.1:12894755-12894774 None:intergenic 50.0%
! AAGAGAGTGAGAGGGGTACA+TGG - chr5.1:12894748-12894767 None:intergenic 50.0%
! AGAACCTAACCCTTTGGCTC+GGG - chr5.1:12894924-12894943 None:intergenic 50.0%
! AGAGAGTGAGAGGGGTACAT+GGG - chr5.1:12894747-12894766 None:intergenic 50.0%
! CACTAGTGTGGGGTTAGTGT+TGG + chr5.1:12893130-12893149 MS.gene010603:intron 50.0%
! CCTGTTGGCCTGCAAATGAT+TGG + chr5.1:12896530-12896549 MS.gene010603:CDS 50.0%
! CTTGATGCCATTGGCTGCTT+TGG + chr5.1:12894016-12894035 MS.gene010603:CDS 50.0%
! GTTCATCGGTTGCTGATGCT+GGG + chr5.1:12894038-12894057 MS.gene010603:CDS 50.0%
! TCAGCCTCCTTTTGATGCGA+CGG + chr5.1:12892122-12892141 MS.gene010603:CDS 50.0%
! TGGTGGATCGAGGATACTTG+AGG + chr5.1:12892095-12892114 MS.gene010603:CDS 50.0%
!! AGTTGGTGAGAAGGGAGTGA+CGG - chr5.1:12891858-12891877 None:intergenic 50.0%
!! GTATGTTGGTGGGTTGGCTA+TGG + chr5.1:12893689-12893708 MS.gene010603:intron 50.0%
!!! CCTGCCTTGGTTTTACCATG+TGG + chr5.1:12896479-12896498 MS.gene010603:CDS 50.0%
AAGCAGCTGAAGGAGCTGCA+GGG - chr5.1:12895572-12895591 None:intergenic 55.0%
AAGGGAGGTGGAGGAAGGAA+CGG - chr5.1:12891945-12891964 None:intergenic 55.0%
AATAGGTGACTGCCAACCCG+TGG + chr5.1:12893801-12893820 MS.gene010603:intron 55.0%
ACGCTATCAGCTCCGATTGG+TGG - chr5.1:12897872-12897891 None:intergenic 55.0%
AGGAGGATCATCCGGAGGAT+CGG + chr5.1:12893841-12893860 MS.gene010603:CDS 55.0%
ATAGGTGACTGCCAACCCGT+GGG + chr5.1:12893802-12893821 MS.gene010603:intron 55.0%
ATCCTCGATCCACCAGTGGA+CGG - chr5.1:12892090-12892109 None:intergenic 55.0%
ATCTCTGCCGGCGAGGAAAT+TGG + chr5.1:12892009-12892028 MS.gene010603:CDS 55.0%
CAACCCGTGGGATGTTTCCA+GGG + chr5.1:12893814-12893833 MS.gene010603:CDS 55.0%
CGATGAGGGAGTGGTCAGAA+GGG - chr5.1:12891963-12891982 None:intergenic 55.0%
CTAGACCGCAGAATCTCTGC+CGG + chr5.1:12891997-12892016 MS.gene010603:CDS 55.0%
CTTACAGAGACTGCACCACC+CGG - chr5.1:12893517-12893536 None:intergenic 55.0%
GACGGCGGTGAAGAGAGTTA+AGG + chr5.1:12892140-12892159 MS.gene010603:CDS 55.0%
GAGATTGTAGAGGATCCGGG+TGG + chr5.1:12893499-12893518 MS.gene010603:intron 55.0%
GAGGTGGGATTGGATGAGGT+CGG - chr5.1:12891893-12891912 None:intergenic 55.0%
GATTCCCGAGCCAAAGGGTT+AGG + chr5.1:12894917-12894936 MS.gene010603:CDS 55.0%
GCATGAATGCCCGTCCAAAC+TGG - chr5.1:12892822-12892841 None:intergenic 55.0%
GGCAACCCAAGCGAAAAGGA+CGG - chr5.1:12894646-12894665 None:intergenic 55.0%
GGGACATATGCCCTTTCAGC+TGG + chr5.1:12895114-12895133 MS.gene010603:CDS 55.0%
GGTCATGTGCTTGAGCGATG+AGG - chr5.1:12891978-12891997 None:intergenic 55.0%
TAAGCAGCTGAAGGAGCTGC+AGG - chr5.1:12895573-12895592 None:intergenic 55.0%
TGAGCAGGCCACATAACTGC+TGG + chr5.1:12895913-12895932 MS.gene010603:intron 55.0%
TGCTGGCAACCCAAGCGAAA+AGG - chr5.1:12894650-12894669 None:intergenic 55.0%
TGGGAGAGTCCACTAGTGTG+GGG + chr5.1:12893120-12893139 MS.gene010603:intron 55.0%
TTCACCGCCGTCGCATCAAA+AGG - chr5.1:12892132-12892151 None:intergenic 55.0%
! AATTTGAGAGGGAGGTGCGG+TGG - chr5.1:12891827-12891846 None:intergenic 55.0%
! AGGCAGCCGGCATCTTTTTG+CGG + chr5.1:12893926-12893945 MS.gene010603:CDS 55.0%
! CACTGCCGTCCTTTTCGCTT+GGG + chr5.1:12894638-12894657 MS.gene010603:CDS 55.0%
! GAGAGTGAGAGGGGTACATG+GGG - chr5.1:12894746-12894765 None:intergenic 55.0%
! GAGGGAGAAGCGTGAAAGAG+TGG - chr5.1:12891764-12891783 None:intergenic 55.0%
! GGAACGTGGAGTTTGGAGTG+TGG - chr5.1:12891743-12891762 None:intergenic 55.0%
! GGGGGTGTGTAAGAGTAGCT+TGG - chr5.1:12891798-12891817 None:intergenic 55.0%
! GGTTCATCGGTTGCTGATGC+TGG + chr5.1:12894037-12894056 MS.gene010603:CDS 55.0%
! TCACTGCCGTCCTTTTCGCT+TGG + chr5.1:12894637-12894656 MS.gene010603:CDS 55.0%
! TGGTGGAAGTATGAGGCAGC+CGG + chr5.1:12893913-12893932 MS.gene010603:CDS 55.0%
!! AGCTTGGGTGGATGATGGGA+GGG - chr5.1:12891782-12891801 None:intergenic 55.0%
!! GGAGAGGGAGTTGGTGAGAA+GGG - chr5.1:12891866-12891885 None:intergenic 55.0%
!! GTGTGGGGTTAGTGTTGGTG+AGG + chr5.1:12893135-12893154 MS.gene010603:intron 55.0%
!! TAGCTTGGGTGGATGATGGG+AGG - chr5.1:12891783-12891802 None:intergenic 55.0%
AACTGCAGCTGCCGATCCTC+CGG - chr5.1:12893855-12893874 None:intergenic 60.0%
ACCGCCGTCGCATCAAAAGG+AGG - chr5.1:12892129-12892148 None:intergenic 60.0%
AGCAGCTGAAGGAGCTGCAG+GGG - chr5.1:12895571-12895590 None:intergenic 60.0%
AGGCCAACAGGAAGCCCTGT+CGG - chr5.1:12896521-12896540 None:intergenic 60.0%
AGTGGTCAGAAGGGAGGTGG+AGG - chr5.1:12891954-12891973 None:intergenic 60.0%
CAGGGAGAGCTGCTGAGAGT+GGG + chr5.1:12897442-12897461 MS.gene010603:intron 60.0%
CCAACCCGTGGGATGTTTCC+AGG + chr5.1:12893813-12893832 MS.gene010603:CDS 60.0%
CCAAGGCAGGTAGTCCAGCT+AGG - chr5.1:12896469-12896488 None:intergenic 60.0%
CCTAGCTGGACTACCTGCCT+TGG + chr5.1:12896466-12896485 MS.gene010603:CDS 60.0%
CCTGGAAACATCCCACGGGT+TGG - chr5.1:12893816-12893835 None:intergenic 60.0%
CGGCAGAGATTCTGCGGTCT+AGG - chr5.1:12891999-12892018 None:intergenic 60.0%
CGGGTGGTGCAGTCTCTGTA+AGG + chr5.1:12893515-12893534 MS.gene010603:intron 60.0%
GAAGGAACGGAGGTGGGGTT+CGG - chr5.1:12891932-12891951 None:intergenic 60.0%
GATCCTCCGGATGATCCTCC+TGG - chr5.1:12893842-12893861 None:intergenic 60.0%
GCACCCTGGAAACATCCCAC+GGG - chr5.1:12893820-12893839 None:intergenic 60.0%
GCGATGAGGGAGTGGTCAGA+AGG - chr5.1:12891964-12891983 None:intergenic 60.0%
GGATTGGATGAGGTCGGTGG+CGG - chr5.1:12891887-12891906 None:intergenic 60.0%
GGCACCCTGGAAACATCCCA+CGG - chr5.1:12893821-12893840 None:intergenic 60.0%
GGGTGAGGTGGGATTGGATG+AGG - chr5.1:12891897-12891916 None:intergenic 60.0%
GTCAGAAGGGAGGTGGAGGA+AGG - chr5.1:12891950-12891969 None:intergenic 60.0%
GTGCTTGAGCGATGAGGGAG+TGG - chr5.1:12891972-12891991 None:intergenic 60.0%
GTGGAGGAAGGAACGGAGGT+GGG - chr5.1:12891938-12891957 None:intergenic 60.0%
GTGGGATTGGATGAGGTCGG+TGG - chr5.1:12891890-12891909 None:intergenic 60.0%
TGAGGGAGTGGTCAGAAGGG+AGG - chr5.1:12891960-12891979 None:intergenic 60.0%
TGGAGGAAGGAACGGAGGTG+GGG - chr5.1:12891937-12891956 None:intergenic 60.0%
TGGTGAGAAGGGAGTGACGG+AGG - chr5.1:12891855-12891874 None:intergenic 60.0%
! AGGGTGCCAGGAGGATCATC+CGG + chr5.1:12893833-12893852 MS.gene010603:CDS 60.0%
! GATGTTTCCAGGGTGCCAGG+AGG + chr5.1:12893824-12893843 MS.gene010603:CDS 60.0%
! GCCTCCTTTTGATGCGACGG+CGG + chr5.1:12892125-12892144 MS.gene010603:CDS 60.0%
! GGTGAGAAGGGAGTGACGGA+GGG - chr5.1:12891854-12891873 None:intergenic 60.0%
! TGGGATGTTTCCAGGGTGCC+AGG + chr5.1:12893821-12893840 MS.gene010603:CDS 60.0%
!! CGGAGAGGGAGTTGGTGAGA+AGG - chr5.1:12891867-12891886 None:intergenic 60.0%
ACGGCTGACATGCCGTCCAC+TGG + chr5.1:12892075-12892094 MS.gene010603:CDS 65.0%
CCTCGCCGGCAGAGATTCTG+CGG - chr5.1:12892005-12892024 None:intergenic 65.0%
CGGCAGCTGCAGTTTCTGCC+AGG + chr5.1:12893861-12893880 MS.gene010603:CDS 65.0%
GAGACGGAGGTGGGTGAGGT+GGG - chr5.1:12891908-12891927 None:intergenic 65.0%
GCAGGGAGAGCTGCTGAGAG+TGG + chr5.1:12897441-12897460 MS.gene010603:intron 65.0%
GCTGACATGCCGTCCACTGG+TGG + chr5.1:12892078-12892097 MS.gene010603:CDS 65.0%
GGACCGACAGGGCTTCCTGT+TGG + chr5.1:12896515-12896534 MS.gene010603:CDS 65.0%
GGAGGTGGAGGAAGGAACGG+AGG - chr5.1:12891942-12891961 None:intergenic 65.0%
GGAGGTGGGTGAGGTGGGAT+TGG - chr5.1:12891903-12891922 None:intergenic 65.0%
GGATGATCCTCCTGGCACCC+TGG - chr5.1:12893834-12893853 None:intergenic 65.0%
GGGAGTGGTCAGAAGGGAGG+TGG - chr5.1:12891957-12891976 None:intergenic 65.0%
GGTGGAGGAAGGAACGGAGG+TGG - chr5.1:12891939-12891958 None:intergenic 65.0%
GTGCCAGGAGGATCATCCGG+AGG + chr5.1:12893836-12893855 MS.gene010603:CDS 65.0%
TGAGACGGAGGTGGGTGAGG+TGG - chr5.1:12891909-12891928 None:intergenic 65.0%
! TGCCGTCCACTGGTGGATCG+AGG + chr5.1:12892085-12892104 MS.gene010603:CDS 65.0%
!! GATGAGGTCGGTGGCGGAGA+GGG - chr5.1:12891881-12891900 None:intergenic 65.0%
!! GGAGGTGGGGTTCGGTGAGA+CGG - chr5.1:12891924-12891943 None:intergenic 65.0%
!! GGGTTCGGTGAGACGGAGGT+GGG - chr5.1:12891917-12891936 None:intergenic 65.0%
CCGCAGAATCTCTGCCGGCG+AGG + chr5.1:12892002-12892021 MS.gene010603:CDS 70.0%
CGGTGAGACGGAGGTGGGTG+AGG - chr5.1:12891912-12891931 None:intergenic 70.0%
! AGGGAGGTGCGGTGGCAGGT+GGG - chr5.1:12891819-12891838 None:intergenic 70.0%
! TGAGAGGGAGGTGCGGTGGC+AGG - chr5.1:12891823-12891842 None:intergenic 70.0%
!! GGATGAGGTCGGTGGCGGAG+AGG - chr5.1:12891882-12891901 None:intergenic 70.0%
!! GGGGTTCGGTGAGACGGAGG+TGG - chr5.1:12891918-12891937 None:intergenic 70.0%
!! GGTGGGGTTCGGTGAGACGG+AGG - chr5.1:12891921-12891940 None:intergenic 70.0%
!! GTCGGTGGCGGAGAGGGAGT+TGG - chr5.1:12891875-12891894 None:intergenic 70.0%
GAGGTGCGGTGGCAGGTGGG+GGG - chr5.1:12891816-12891835 None:intergenic 75.0%
! GAGGGAGGTGCGGTGGCAGG+TGG - chr5.1:12891820-12891839 None:intergenic 75.0%
! GGAGGTGCGGTGGCAGGTGG+GGG - chr5.1:12891817-12891836 None:intergenic 75.0%
! GGGAGGTGCGGTGGCAGGTG+GGG - chr5.1:12891818-12891837 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 12891727 12897898 12891727 ID=MS.gene010603
chr5.1 mRNA 12891727 12897898 12891727 ID=MS.gene010603.t1;Parent=MS.gene010603
chr5.1 exon 12891727 12892242 12891727 ID=MS.gene010603.t1.exon1;Parent=MS.gene010603.t1
chr5.1 CDS 12891727 12892242 12891727 ID=cds.MS.gene010603.t1;Parent=MS.gene010603.t1
chr5.1 exon 12893806 12894117 12893806 ID=MS.gene010603.t1.exon2;Parent=MS.gene010603.t1
chr5.1 CDS 12893806 12894117 12893806 ID=cds.MS.gene010603.t1;Parent=MS.gene010603.t1
chr5.1 exon 12894324 12894503 12894324 ID=MS.gene010603.t1.exon3;Parent=MS.gene010603.t1
chr5.1 CDS 12894324 12894503 12894324 ID=cds.MS.gene010603.t1;Parent=MS.gene010603.t1
chr5.1 exon 12894634 12894728 12894634 ID=MS.gene010603.t1.exon4;Parent=MS.gene010603.t1
chr5.1 CDS 12894634 12894728 12894634 ID=cds.MS.gene010603.t1;Parent=MS.gene010603.t1
chr5.1 exon 12894871 12894946 12894871 ID=MS.gene010603.t1.exon5;Parent=MS.gene010603.t1
chr5.1 CDS 12894871 12894946 12894871 ID=cds.MS.gene010603.t1;Parent=MS.gene010603.t1
chr5.1 exon 12895093 12895170 12895093 ID=MS.gene010603.t1.exon6;Parent=MS.gene010603.t1
chr5.1 CDS 12895093 12895170 12895093 ID=cds.MS.gene010603.t1;Parent=MS.gene010603.t1
chr5.1 exon 12895507 12895600 12895507 ID=MS.gene010603.t1.exon7;Parent=MS.gene010603.t1
chr5.1 CDS 12895507 12895600 12895507 ID=cds.MS.gene010603.t1;Parent=MS.gene010603.t1
chr5.1 exon 12895686 12895735 12895686 ID=MS.gene010603.t1.exon8;Parent=MS.gene010603.t1
chr5.1 CDS 12895686 12895735 12895686 ID=cds.MS.gene010603.t1;Parent=MS.gene010603.t1
chr5.1 exon 12896455 12896568 12896455 ID=MS.gene010603.t1.exon9;Parent=MS.gene010603.t1
chr5.1 CDS 12896455 12896568 12896455 ID=cds.MS.gene010603.t1;Parent=MS.gene010603.t1
chr5.1 exon 12897809 12897898 12897809 ID=MS.gene010603.t1.exon10;Parent=MS.gene010603.t1
chr5.1 CDS 12897809 12897898 12897809 ID=cds.MS.gene010603.t1;Parent=MS.gene010603.t1
Gene Sequence

>MS.gene010603

ATGAAAATGCTATCCACACTCCAAACTCCACGTTCCACTCTTTCACGCTTCTCCCTCCCATCATCCACCCAAGCTACTCTTACACACCCCCCACCTGCCACCGCACCTCCCTCTCAAATTCTCACCCTCCGTCACTCCCTTCTCACCAACTCCCTCTCCGCCACCGACCTCATCCAATCCCACCTCACCCACCTCCGTCTCACCGAACCCCACCTCCGTTCCTTCCTCCACCTCCCTTCTGACCACTCCCTCATCGCTCAAGCACATGACCTAGACCGCAGAATCTCTGCCGGCGAGGAAATTGGTCCTCTTGCTGGTGTTCTTGTTGCTGTTAAGGATAATATTTGTACGGCTGACATGCCGTCCACTGGTGGATCGAGGATACTTGAGGGTTATCAGCCTCCTTTTGATGCGACGGCGGTGAAGAGAGTTAAGGAGTTGGGTGGGATTGTTGTTGGGAAGACGAATATGGATGAGTTTGGTATGGGGAGTACCACTGAAGCTTCTGCTTATCAGGTTCTAACACTCGCTTTTCAATGTACCTTAGTCATAATTTGAAGTGAGTTTTGATTTTATGTTCTTTCTGTGAGTGTGTTTAATCTAATCTTTGAAACATTCGTCCATGAATGTATTGAAATTGCAAACACATTCACACGTGCATTTTTTATTAGTCATTTTGGTCCTGACTTTCAAATAGGGCGCACTTAAATAATTATTAATATTTCAAAAAAGTCTCTGACTCTGTCAAATTTTACTTATATTAGTTCTCCCAAGATTATGTTAGGGACTAAATTGACGAGGGGTTAAATATAGGGACTAAATTGATTGTAAGTTGTTAAAATATAGTGACGTAGTTGATAGTAAATGGTTAAATAAAGGGACTGATTTGAAAGTTTTAATACATTTAGGAACTTTTTGAAATATTTCTAATTTCAGAGATCTATTTGAGAGCACCCTAGTGATTTGAGAGCACTCAATCCATTTCATTTTTTTTTTTCCTTTGCACCGTAGTGTGTCTCTGTTTGTTGTTTTTTATATCCGGTGTTTGTTTGTTTGTTTTGTTGATTTTGAGGATTAGTGTGTTTTTCTTTTCCAGTTTGGACGGGCATTCATGCTGAATTAGAATTAAGTTTGTATATTGACCTTATTTTTTAGTTTTTGGATATATATTTATTATTATTGATGTATTCAATGTTAATAATGGAGATATCAAAATAAGGGATGGAGAAAAAGACTAAGGTTTCAATAATGTTCATATCACAATGGTTATGGAAATAAGGGTTACAAAGAGAAAATATAATAAAACATAAATGACTAGACTACTAACTTAGAAATATAAAAGGCCCGATACCATAAATCCAATATACTATTATCTAACATCTAGTATTCAATATGGGAGAGTCCACTAGTGTGGGGTTAGTGTTGGTGAGGAATCATGATGATTGATGGTCTACTTGGCTGATGTCGCACATGTTGAGCTGCGTAATAAAAGAACGGTGTCTTATGCAATATGCAGTATGCATCTAAGAATGTCTCCAAATTTGAAATGCCCTGTTGTTTGTAATATTAGTAATGAATATGAGAAGGTATGAGTGAGAGGTGACAATATGTGGTTACTTGTTTAAGATATCTTGTGTTTAGCAATTGAATTAAGTTTGTGAGCAGGAGTTCAACATTTGTTTGGGAGAGAAAATGAGCAGAATGATAATTGCAAATTGGATCGCCTACAATTGCTTTATGGTGCAGTCTCTGTAGGGATTGTTAGATTTAGAGAGATTGTAGAGGATCCGGGTGGTGCAGTCTCTGTAAGGACCATTAGATTTAGAGAGAGATTATAGAGGATCTGGGTCAGTTGAAAATTGTGGATGAATAACCCGATGATGCATATAGTGATGCATTGCTAAGTTTATATTTTTGTTAATACAAGACATGCAAAAAGTGGGGTTCTGTTGTTTGTTCTCTGTATGTTGGTGGGTTGGCTATGGTTTTTTAGAGTTTGGTTTCTAGCTTTATTACTTGTACTGCCCATTTATAACTGAAATAAGTTTTGCTCAGGTGATGCATATGTTCATTCAATAGGTGACTGCCAACCCGTGGGATGTTTCCAGGGTGCCAGGAGGATCATCCGGAGGATCGGCAGCTGCAGTTTCTGCCAGGCAGTGTGTTGTATCGTTGGGAAGTGATACTGGTGGAAGTATGAGGCAGCCGGCATCTTTTTGCGGTGTTGTAGGTTTGAAGCCAACATATGGACGTGTCTCAAGATTTGGACTTATGGCGTATGCGTCATCACTTGATGCCATTGGCTGCTTTGGTTCATCGGTTGCTGATGCTGGGATACTTCTCCATGCAATTGCTGGTCATGATAGATTTGATGCCACCTCAAGTAAGCAAGTATGAGTTCTTCACTGTGTTTGGTCCAAATGTTGTAAGATTTCTAAATTCTCGTTATTAGTAATGGTTATTCACTATGTTGGCTATAGTCTTTGTTCAATATGATGGATAATTGCTGAAGTTATTGCTAGTGTTTATTTGTTTTTTTCTTTGTTATGAAGCCAATTTCTTTTCAACAATGAACAATCAATAATGTAATTTGTCAGGAGGTGCCCAACTTTCTATCTCATTTTAACTCTGCAAGTTCTTTGGAAAGTAAGCCCTTGAAAGGTCTGAGAATTGGTTTGATCCGTGAAACTATTGAAGATGGTGTTGATGCTGGAGTAGTTTCTACAATTCGTGATGCTGCTTCACATTTTGAGGCATTAGGATGCTCTGTGAACGAGGTCCTCCACTCATTTTTCTCTCAAACTCTGATCTGAATGATAATTTTTTAAGTTGCTCTACAAGCTTATATTATTACAATCTACTATTCATCCGTTATTTAACCCTTTTCATTTGTCCATTAACTTAAAGGTGTCACTGCCGTCCTTTTCGCTTGGGTTGCCAGCATACTATGTCCTCGCTTTGTCTGAATCATCTTCCAACTTGTCTCGCTATGATGGTATTAGGTCAGTGGCTGACTCCCCATGTACCCCTCTCACTCTCTTCGTCCAAGTACACCCACAACCTAACACAATATTTTATTCTGTGTTGTTTATTTTCATTAATAAATCATTTTGTTTGGCTTGGATCCACCTTCTCTATATCTAGATACGGAAACCAAGTTTATGCTGATGAGCTAGACTCTCTCTATGGAGATTCCCGAGCCAAAGGGTTAGGTTCTGAGGTACACACCTTCTAATCCTTCTCAATTTCAAATTTGGCTGCAAGATTTTCGGTAGCCTTATATATGCATATACCTGTATAAAAGAAATGATCCAATTTTGTATGTATTGTATTTTGAGCTGTCTTTCTCTTTTTAATACATTTCAGGTGAAAATGAGAATTTTGATGGGGACATATGCCCTTTCAGCTGGTTACTATGATGCATATTACAAACGAGCACAGCAGGTACGTCTAACTTTATTTTATGTATTTCTTGGTGGGTCTGATATACCTCTCAAGTCTTCTTAGCCCAATGATCATGAATTCAGTCACTGGACTCAGCTTAATATTTTTTGGTTAAAGAAATTTATAATGTTTCAAGATTTCATCCAGACACGATATACATCCACTCTTGTTCTTTATGTGTCTTTTCGAATATGATGTTACTCAACATAGATATTGATGTGATAGTTAAATTAAACTCTTGCTTCATTTCCTATGTTGTCTTATCGACGTTCTGAATTTCATTTATTTTAGAAGTTTGGGATCTACAAGGCGTTTTATGTGTGTTCTATGTAACAGGTGAGAACCATTATAAGGAATAGCTTTAAGGAAGCACTGGATCAATATGATATCTTGATTTCCCCTGCAGCTCCTTCAGCTGCTTATAAAATTGGTAAGCATCTGTGTAGCTTTCCTTTTGCATTATTGCATGTTAGTGCCTGCAATAGTAATTGTTTCTTTGTCTTTGACATTTGCAGGTGAAAAGAAAAATGATCCTTTGGCTATGTATGCTGGTGACATCATGACTGTAAGTATTTCATTCTTCTTATCGGCTACATTTCTGTCTCATACTTCTGATTTTAATTTATGTTAATGTTAACTAGACAATTAGTGTTAAATTGAGGTTTCAACGTGTGCTGTTGAACTTCAACTCTATTGAACTTAAGCTTGATTCATACATGAGTTCCTAAAGTTTATAGAGCTTTGAGCAGGCCACATAACTGCTGGTTTATGCCTTAGATAATAGATAATCAATTAAACAATCCAAAAAATATCTTAATTAATCAATAAGTGCAGGGTTGTTGCATTGTATTAGTACCTTACCATGTGTCGAGTATATATTATTGTGAGTTCTAGTTACTCCATAAAGGAATATCCTAGCGAATTAAGTCATCATTTAGCATAAGTTGTGTTGAATTATAGAAAATAGAGGCATGATGCGTCTCAACTACACAGCAGAGTCAAATTTATATAGGCTAAGGACAATAATAACAACATAAATATAGGAGATATTTTTCTATTTACTTGATGTGATATGATACAATATGTCTATACAATAATCCTATACAATAAATACATATATGTGAATAATTTTTCAACAAGTTGCATAACTAGTTGTGCACCCAGTGGTTTAGAGCTTCATCTTCTTTATGCATTATCTGTAATTTTATTTCTAGCTACTCAGTTTACATGAGCATGCCGGGCATAATGTTTGCCTTTATTTATTGGTGGTTTCTCTTTTTACAGGTAAATGTCAACCTAGCTGGACTACCTGCCTTGGTTTTACCATGTGGATTTATTGAGAATGGACCGACAGGGCTTCCTGTTGGCCTGCAAATGATTGGTGCAGCATTTAATGAGGTATTGAGTTTTCTTATCAACTACACTGAACTTCATGTTGACGAGGCTTCTCTATGCATTCTCTAGTTTTGCTTTGTTTTTTAGTCTACCTTTCTAAAGAGCATTAAGGAGGGAGATGGTTAAAACCTAAGGAAACGTTTGTTTGATGTCACCAAAATTATTCCCAGGATTGATTGTCCCTGGAATATCACACATGAAATTTGTTCCAAAGAAAGTTTAAAAATTGTTGTTCCGTTGATGATTTGTTTTCCTGGGCATAGTTTCTTAAAGAAATGATATAATTATCAAAACACCCTTATCATGTAAAATAGACGTGGCACGCATGTTGATTTATAAACGTGGGAACTTGCAGTTACTTAGGAGGGTCTAAATGAGAGTTTATGATTTTTTATTGTTGTTCCCCTGGTACCTACGTAAGTTCATAAAGGAAAGAATATTGAAAGTGAAAAAGAAAACTCTAGGTAGTTATTTTTCTCTTTACATTTTGCTTTAGATTGGGTTGGCTGCATTTTGAAAGTTCAAAACATACTGAACTACATGTGGACCAAGTGTACTTTTTTGTTCTATTTGCTAAACTTCCATGTTTATAGAAAAACTACAGATGTTTCTTGAGCTTACGTATTACTGTTGGTAGGATTTTCTTTACTTCCAAGATTGAAAGTTGTCAAATGGTCAAAGTTAACTAACTTGGTCTTTCTGGGTAAAATTTTGGTGTTGTATATTTTAACCTAAAATAATGTGGGCATGTATATGCCTGAGTTCTACAAGAGATAATGTGCATGAGTATGTCTTTGACATTGAACAATAGAATCATCCTTTTTTCCTTGAAAAAAATAAAAATAGAATCATCCTTTTTGGCTTGGAATTTATTTGCAGGGAGAGCTGCTGAGAGTGGGACATATATTTGAGCAAACTCTTGAGAATTACAGATTTGCTAAACTTCCATGTTTATAGAAAAACTACAGATGTTTCTTGAGCTTACGTATTACTGTTGGTAGGATTTTCTTTACTTCCAAGATTGAAAGTTGTCAAATGGTCAAAGTTAACTAACTTGGTCTTTCTGGGTAAAATTTTGGTGTTGTATATTTTAACCTAAAATAATGTGGGCATGTATATGCCTGAGTTCTACAAGAGATAATGTGCATGAGTATGTCTTTGACATTGAACAATAGAATCATCCTTTTTTCCTTGAAAAAAATAAAAATAGAATCATCCTTTTTGGCTTGGAATTTATTTGCAGGGAGAGCTGCTGAGAGTGGGACATATATTTGAGCAAACTCTTGAGAATTACAGATTTGTTCCACCAATCGGAGCTGATAGCGTTGAATAA
Protein sequence

>MS.gene010603.t1

MKMLSTLQTPRSTLSRFSLPSSTQATLTHPPPATAPPSQILTLRHSLLTNSLSATDLIQSHLTHLRLTEPHLRSFLHLPSDHSLIAQAHDLDRRISAGEEIGPLAGVLVAVKDNICTADMPSTGGSRILEGYQPPFDATAVKRVKELGGIVVGKTNMDEFGMGSTTEASAYQVTANPWDVSRVPGGSSGGSAAAVSARQCVVSLGSDTGGSMRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDAIGCFGSSVADAGILLHAIAGHDRFDATSSKQEVPNFLSHFNSASSLESKPLKGLRIGLIRETIEDGVDAGVVSTIRDAASHFEALGCSVNEVSLPSFSLGLPAYYVLALSESSSNLSRYDGIRYGNQVYADELDSLYGDSRAKGLGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIRNSFKEALDQYDILISPAAPSAAYKIGEKKNDPLAMYAGDIMTVNVNLAGLPALVLPCGFIENGPTGLPVGLQMIGAAFNEGELLRVGHIFEQTLENYRFVPPIGADSVE