AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010605

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010605.t1 MTR_5g021710 98.864 352 4 0 1 352 1 352 0.0 734
MS.gene010605.t1 MTR_8g076110 63.944 355 75 9 4 351 2 310 4.10e-152 430
MS.gene010605.t1 MTR_4g036030 57.595 316 94 8 6 294 5 307 7.73e-115 337
MS.gene010605.t1 MTR_4g101680 56.774 310 101 5 6 294 5 302 2.55e-112 331
MS.gene010605.t1 MTR_5g012080 54.785 303 114 9 6 294 5 298 6.32e-106 315
MS.gene010605.t1 MTR_1g096430 48.649 333 135 8 4 320 3 315 9.62e-100 298
MS.gene010605.t1 MTR_2g062730 49.669 302 126 6 3 290 5 294 2.11e-91 277
MS.gene010605.t1 MTR_8g024480 44.023 343 131 7 5 297 12 343 3.82e-85 264
MS.gene010605.t1 MTR_4g035590 73.418 158 41 1 1 158 1 157 1.66e-84 260
MS.gene010605.t1 MTR_3g435150 55.422 166 67 3 8 169 16 178 4.35e-60 196
MS.gene010605.t1 MTR_2g064090 56.209 153 63 2 8 157 6 157 2.07e-59 195
MS.gene010605.t1 MTR_4g108760 52.047 171 75 3 8 174 17 184 7.25e-59 194
MS.gene010605.t1 MTR_6g084430 54.545 154 67 1 4 157 1 151 7.51e-59 193
MS.gene010605.t1 MTR_6g477900 55.263 152 65 2 8 157 6 156 6.49e-58 188
MS.gene010605.t1 MTR_3g109340 40.000 245 129 5 5 235 19 259 5.02e-57 189
MS.gene010605.t1 MTR_1g069805 50.000 176 81 4 1 174 3 173 1.76e-56 185
MS.gene010605.t1 MTR_3g064580 53.205 156 69 2 8 160 6 160 3.61e-56 194
MS.gene010605.t1 MTR_5g076850 52.903 155 70 2 8 160 6 159 7.04e-56 193
MS.gene010605.t1 MTR_3g109340 39.837 246 129 6 5 235 19 260 1.25e-55 186
MS.gene010605.t1 MTR_7g085260 54.375 160 62 4 8 159 17 173 1.29e-55 186
MS.gene010605.t1 MTR_7g097090 53.503 157 66 4 1 155 3 154 3.34e-55 182
MS.gene010605.t1 MTR_2g078700 52.830 159 66 3 8 160 23 178 5.04e-55 185
MS.gene010605.t1 MTR_6g012670 53.205 156 66 2 8 159 20 172 1.34e-54 182
MS.gene010605.t1 MTR_4g081870 50.909 165 71 3 1 158 1 162 1.51e-54 180
MS.gene010605.t1 MTR_8g467490 36.458 288 152 11 2 266 8 287 3.06e-54 183
MS.gene010605.t1 MTR_5g041940 50.318 157 69 2 8 158 3 156 3.57e-54 179
MS.gene010605.t1 MTR_2g064470 52.532 158 65 4 4 157 7 158 3.58e-54 180
MS.gene010605.t1 MTR_7g085220 46.196 184 79 4 1 168 1 180 4.63e-54 181
MS.gene010605.t1 MTR_1g008740 44.724 199 94 6 5 192 10 203 1.06e-53 180
MS.gene010605.t1 MTR_1g008740 44.724 199 94 6 5 192 24 217 1.26e-53 181
MS.gene010605.t1 MTR_3g096920 49.133 173 71 4 8 175 7 167 1.61e-53 178
MS.gene010605.t1 MTR_5g040420 45.699 186 84 5 2 175 8 188 2.63e-53 181
MS.gene010605.t1 MTR_6g011860 46.857 175 78 4 10 172 17 188 3.15e-53 180
MS.gene010605.t1 MTR_4g098630 46.073 191 93 4 6 187 4 193 3.17e-53 178
MS.gene010605.t1 MTR_7g005280 50.299 167 75 3 5 169 12 172 4.40e-53 176
MS.gene010605.t1 MTR_2g079990 44.670 197 101 3 8 202 16 206 4.90e-53 179
MS.gene010605.t1 MTR_3g070030 43.689 206 102 5 1 201 12 208 2.93e-52 177
MS.gene010605.t1 MTR_2g080010 47.126 174 74 4 3 161 10 180 6.07e-52 176
MS.gene010605.t1 MTR_7g011130 48.387 186 76 3 1 169 12 194 9.82e-52 175
MS.gene010605.t1 MTR_3g116070 53.459 159 63 4 5 160 20 170 1.25e-51 175
MS.gene010605.t1 MTR_6g032770 49.398 166 75 4 8 167 18 180 2.78e-51 175
MS.gene010605.t1 MTR_7g011120 45.366 205 95 4 1 194 1 199 4.14e-51 172
MS.gene010605.t1 MTR_3g096920 53.103 145 64 2 8 152 7 147 5.10e-51 173
MS.gene010605.t1 MTR_1g090720 44.175 206 100 6 6 197 40 244 5.36e-51 177
MS.gene010605.t1 MTR_5g014300 50.943 159 65 4 8 157 6 160 9.60e-51 172
MS.gene010605.t1 MTR_8g094580 51.592 157 66 3 8 158 7 159 1.39e-50 170
MS.gene010605.t1 MTR_4g089135 42.487 193 81 4 8 173 15 204 1.51e-50 172
MS.gene010605.t1 MTR_3g088110 49.405 168 75 4 8 169 7 170 3.33e-50 169
MS.gene010605.t1 MTR_7g100990 49.068 161 71 3 5 157 8 165 1.51e-49 169
MS.gene010605.t1 MTR_3g096140 49.669 151 71 3 10 157 9 157 1.78e-49 167
MS.gene010605.t1 MTR_8g059170 46.875 160 78 2 8 163 14 170 1.12e-48 167
MS.gene010605.t1 MTR_3g096140 49.669 151 71 3 10 157 9 157 1.34e-48 167
MS.gene010605.t1 MTR_2157s0010 45.029 171 77 3 1 157 1 168 1.35e-48 164
MS.gene010605.t1 MTR_3g093040 51.316 152 71 2 8 157 108 258 1.50e-48 166
MS.gene010605.t1 MTR_5g069030 52.288 153 70 2 8 158 25 176 2.10e-48 172
MS.gene010605.t1 MTR_2g079990 39.556 225 100 4 8 202 16 234 1.01e-47 166
MS.gene010605.t1 MTR_2g093810 49.045 157 69 3 9 157 15 168 1.39e-46 161
MS.gene010605.t1 MTR_3g093050 50.658 152 72 2 8 157 22 172 2.08e-46 166
MS.gene010605.t1 MTR_3g093050 50.658 152 72 2 8 157 22 172 2.97e-46 166
MS.gene010605.t1 MTR_1g097300 52.672 131 61 1 10 140 21 150 4.20e-46 165
MS.gene010605.t1 MTR_2g068880 41.500 200 97 4 8 189 21 218 4.46e-46 159
MS.gene010605.t1 MTR_1g090723 46.203 158 81 3 10 164 10 166 2.49e-44 161
MS.gene010605.t1 MTR_5g090970 43.114 167 78 3 5 157 15 178 2.53e-44 155
MS.gene010605.t1 MTR_8g063550 46.711 152 74 3 10 157 8 156 5.40e-44 155
MS.gene010605.t1 MTR_8g063550 46.405 153 75 3 10 158 8 157 7.00e-44 157
MS.gene010605.t1 MTR_0036s0150 45.860 157 82 3 10 164 7 162 7.89e-44 159
MS.gene010605.t1 MTR_4g134460 46.053 152 78 2 7 157 53 201 1.02e-43 156
MS.gene010605.t1 MTR_2g068920 39.320 206 105 4 8 195 20 223 1.06e-43 152
MS.gene010605.t1 MTR_8g063550 46.753 154 73 3 10 158 8 157 1.76e-43 156
MS.gene010605.t1 MTR_4g075980 44.311 167 80 4 1 160 4 164 2.13e-43 152
MS.gene010605.t1 MTR_1g090723 45.223 157 83 3 10 164 10 165 6.72e-43 157
MS.gene010605.t1 MTR_1g090723 45.223 157 83 3 10 164 10 165 8.93e-43 157
MS.gene010605.t1 MTR_5g090970 43.114 167 77 4 5 157 15 177 1.56e-42 150
MS.gene010605.t1 MTR_2g086880 40.933 193 91 5 1 193 11 180 2.25e-42 154
MS.gene010605.t1 MTR_8g093580 46.104 154 74 3 10 158 8 157 2.31e-42 154
MS.gene010605.t1 MTR_2g086880 40.933 193 91 5 1 193 11 180 2.62e-42 155
MS.gene010605.t1 MTR_3g070040 40.404 198 96 5 12 201 12 195 4.69e-41 147
MS.gene010605.t1 MTR_8g099750 43.860 171 81 5 8 168 14 179 5.79e-40 141
MS.gene010605.t1 MTR_3g096140 45.985 137 69 3 24 157 2 136 3.61e-39 142
MS.gene010605.t1 MTR_3g098810 45.181 166 74 4 8 161 14 174 1.45e-38 137
MS.gene010605.t1 MTR_3g098810 49.630 135 59 3 8 138 14 143 4.84e-36 129
MS.gene010605.t1 MTR_2g086690 45.912 159 71 7 9 155 5 160 1.85e-35 130
MS.gene010605.t1 MTR_4g052620 47.826 138 63 4 4 135 1 135 2.49e-35 130
MS.gene010605.t1 MTR_8g023840 44.295 149 75 5 8 153 11 154 2.00e-33 128
MS.gene010605.t1 MTR_4g094302 39.375 160 76 4 8 157 11 159 1.88e-31 117
MS.gene010605.t1 MTR_8g023860 44.295 149 75 5 8 153 12 155 2.72e-31 122
MS.gene010605.t1 MTR_8g023900 37.427 171 97 6 4 169 8 173 6.57e-30 119
MS.gene010605.t1 MTR_8g023900 38.506 174 94 6 4 169 184 352 7.89e-28 113
MS.gene010605.t1 MTR_4g094302 43.511 131 61 3 8 136 11 130 9.66e-30 112
MS.gene010605.t1 MTR_8g023930 39.394 165 92 5 8 169 24 183 2.75e-29 117
MS.gene010605.t1 MTR_7g105170 36.646 161 91 4 8 157 4 164 6.51e-29 112
MS.gene010605.t1 MTR_8g094580 50.495 101 43 2 64 158 6 105 6.08e-28 109
MS.gene010605.t1 MTR_8g023880 36.095 169 82 7 6 157 5 164 2.21e-24 100
MS.gene010605.t1 MTR_7g070140 49.425 87 41 2 59 143 13 98 1.04e-22 92.8
MS.gene010605.t1 MTR_8g093790 35.802 162 79 7 8 167 10 148 1.20e-20 88.6
MS.gene010605.t1 MTR_7g070150 43.902 82 44 2 107 188 8 87 1.37e-16 74.7
MS.gene010605.t1 MTR_7g083360 30.556 144 92 5 5 144 7 146 1.30e-13 68.2
MS.gene010605.t1 MTR_3g096400 27.439 164 94 6 8 156 7 160 1.81e-13 68.9
MS.gene010605.t1 MTR_7g083330 30.469 128 84 4 8 134 18 141 6.51e-13 67.0
MS.gene010605.t1 MTR_7g083370 29.323 133 89 4 3 134 5 133 2.53e-12 64.3
MS.gene010605.t1 MTR_1g087190 53.333 45 20 1 10 53 7 51 7.64e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010605.t1 AT2G18060 62.599 377 102 14 1 351 1 364 3.76e-152 432
MS.gene010605.t1 AT2G18060 62.599 377 102 14 1 351 1 364 3.76e-152 432
MS.gene010605.t1 AT4G36160 64.848 330 86 12 1 310 5 324 4.92e-142 407
MS.gene010605.t1 AT4G36160 64.848 330 86 12 1 310 1 320 7.49e-142 407
MS.gene010605.t1 AT4G36160 64.848 330 86 12 1 310 1 320 7.49e-142 407
MS.gene010605.t1 AT5G66300 59.603 302 82 9 6 291 9 286 2.53e-118 344
MS.gene010605.t1 AT1G12260 51.462 342 109 8 6 294 5 342 1.71e-107 320
MS.gene010605.t1 AT1G62700 49.575 353 126 7 6 315 5 348 1.79e-106 317
MS.gene010605.t1 AT1G62700 49.575 353 126 7 6 315 5 348 1.79e-106 317
MS.gene010605.t1 AT1G12260 54.452 292 123 4 6 294 5 289 1.20e-103 308
MS.gene010605.t1 AT1G71930 51.186 295 120 5 4 293 5 280 5.29e-98 293
MS.gene010605.t1 AT1G71930 51.186 295 120 5 4 293 5 280 5.29e-98 293
MS.gene010605.t1 AT5G62380 50.831 301 129 6 1 291 1 292 3.01e-96 290
MS.gene010605.t1 AT5G62380 50.831 301 129 6 1 291 1 292 3.01e-96 290
MS.gene010605.t1 AT2G46770 50.489 307 102 9 5 291 13 289 8.14e-91 276
MS.gene010605.t1 AT1G32770 47.231 307 125 8 5 292 13 301 1.73e-84 260
MS.gene010605.t1 AT2G18060 53.287 289 97 14 88 351 1 276 2.74e-83 254
MS.gene010605.t1 AT3G61910 48.243 313 92 9 5 292 8 275 1.20e-82 254
MS.gene010605.t1 AT4G10350 71.519 158 43 1 3 158 4 161 3.58e-82 253
MS.gene010605.t1 AT1G33280 70.253 158 46 1 1 158 1 157 2.97e-81 250
MS.gene010605.t1 AT1G79580 48.026 304 121 9 8 289 17 305 2.19e-80 250
MS.gene010605.t1 AT1G79580 48.026 304 121 9 8 289 17 305 2.19e-80 250
MS.gene010605.t1 AT1G79580 48.026 304 121 9 8 289 17 305 2.19e-80 250
MS.gene010605.t1 AT1G79580 48.026 304 121 9 8 289 17 305 2.19e-80 250
MS.gene010605.t1 AT1G79580 48.026 304 121 9 8 289 17 305 2.19e-80 250
MS.gene010605.t1 AT3G18400 56.329 158 65 2 4 160 1 155 3.04e-62 201
MS.gene010605.t1 AT3G17730 54.430 158 69 2 8 163 6 162 1.50e-59 192
MS.gene010605.t1 AT5G39610 52.695 167 72 3 8 170 20 183 7.33e-59 192
MS.gene010605.t1 AT2G24430 52.976 168 69 4 5 169 13 173 1.85e-58 192
MS.gene010605.t1 AT2G24430 52.976 168 69 4 5 169 13 173 1.85e-58 192
MS.gene010605.t1 AT5G07680 52.410 166 72 3 8 169 3 165 4.05e-58 191
MS.gene010605.t1 AT5G07680 52.410 166 72 3 8 169 17 179 6.56e-58 191
MS.gene010605.t1 AT5G61430 55.844 154 61 3 8 157 16 166 1.37e-57 190
MS.gene010605.t1 AT1G69490 51.250 160 69 2 5 158 6 162 5.92e-57 186
MS.gene010605.t1 AT1G76420 55.975 159 64 3 2 157 16 171 1.33e-56 187
MS.gene010605.t1 AT5G17260 54.248 153 66 2 8 157 6 157 1.75e-56 191
MS.gene010605.t1 AT1G65910 54.605 152 66 2 8 157 6 156 6.48e-56 193
MS.gene010605.t1 AT3G03200 54.248 153 66 2 8 157 6 157 8.13e-56 189
MS.gene010605.t1 AT3G10490 44.059 202 103 3 3 201 22 216 1.55e-55 182
MS.gene010605.t1 AT3G29035 51.875 160 70 2 8 163 24 180 1.92e-55 184
MS.gene010605.t1 AT1G56010 41.518 224 113 6 4 220 15 227 1.06e-54 182
MS.gene010605.t1 AT3G10490 41.818 220 117 4 3 219 22 233 1.86e-54 185
MS.gene010605.t1 AT1G54330 56.000 150 64 2 8 157 6 153 2.23e-54 181
MS.gene010605.t1 AT5G18270 50.877 171 73 5 8 170 21 188 9.46e-54 180
MS.gene010605.t1 AT3G10480 44.792 192 96 3 6 194 25 209 1.36e-53 183
MS.gene010605.t1 AT5G53950 51.205 166 72 3 8 167 17 179 2.60e-53 180
MS.gene010605.t1 AT3G15170 51.497 167 72 4 5 165 17 180 3.98e-53 178
MS.gene010605.t1 AT5G18270 50.292 171 74 5 8 170 21 188 4.34e-53 178
MS.gene010605.t1 AT3G12977 49.383 162 76 3 4 162 14 172 4.88e-53 176
MS.gene010605.t1 AT5G46590 53.205 156 68 3 6 157 4 158 5.09e-53 177
MS.gene010605.t1 AT4G10350 73.148 108 27 1 53 158 7 114 5.98e-53 177
MS.gene010605.t1 AT5G46590 58.088 136 55 2 6 140 4 138 2.01e-52 175
MS.gene010605.t1 AT3G04060 49.697 165 75 4 8 167 20 181 4.57e-52 176
MS.gene010605.t1 AT3G04070 48.795 166 68 4 6 157 8 170 6.63e-52 176
MS.gene010605.t1 AT3G10480 44.792 192 95 4 6 194 25 208 1.05e-51 178
MS.gene010605.t1 AT4G27410 49.693 163 76 3 8 168 14 172 1.16e-51 174
MS.gene010605.t1 AT5G63790 48.235 170 77 3 8 170 60 225 1.82e-51 174
MS.gene010605.t1 AT5G63790 48.235 170 77 3 8 170 50 215 2.15e-51 173
MS.gene010605.t1 AT4G17980 51.266 158 70 3 6 157 4 160 2.50e-51 172
MS.gene010605.t1 AT4G17980 51.266 158 70 3 6 157 4 160 5.12e-51 172
MS.gene010605.t1 AT2G43000 49.057 159 75 3 10 165 20 175 5.18e-51 171
MS.gene010605.t1 AT3G15500 50.000 156 73 2 7 160 13 165 5.27e-51 172
MS.gene010605.t1 AT4G28530 41.600 250 111 10 1 229 3 238 6.45e-51 173
MS.gene010605.t1 AT5G04410 46.927 179 84 5 6 180 7 178 7.73e-51 178
MS.gene010605.t1 AT2G33480 49.045 157 74 1 8 164 15 165 8.87e-51 170
MS.gene010605.t1 AT5G39820 41.237 194 84 4 1 169 13 201 1.72e-50 172
MS.gene010605.t1 AT1G77450 51.613 155 66 3 9 158 11 161 1.79e-50 169
MS.gene010605.t1 AT5G08790 50.625 160 68 3 8 160 7 162 4.66e-50 169
MS.gene010605.t1 AT2G33480 49.057 159 73 2 8 164 15 167 6.42e-50 168
MS.gene010605.t1 AT3G10500 50.323 155 72 3 6 157 7 159 7.59e-50 175
MS.gene010605.t1 AT3G10480 39.286 224 95 3 6 194 25 242 8.54e-50 174
MS.gene010605.t1 AT1G52890 49.677 155 73 2 8 160 14 165 9.82e-50 169
MS.gene010605.t1 AT1G61110 47.619 168 70 4 8 160 16 180 1.08e-49 169
MS.gene010605.t1 AT1G33060 53.165 158 68 4 3 157 20 174 2.69e-49 175
MS.gene010605.t1 AT1G33060 53.165 158 68 4 3 157 20 174 2.82e-49 175
MS.gene010605.t1 AT1G01720 49.682 157 69 3 8 158 7 159 6.15e-49 166
MS.gene010605.t1 AT4G35580 48.876 178 87 3 3 178 5 180 6.57e-49 172
MS.gene010605.t1 AT4G27410 46.893 177 77 4 8 168 14 189 6.92e-49 167
MS.gene010605.t1 AT4G35580 48.876 178 87 3 3 178 5 180 8.65e-49 172
MS.gene010605.t1 AT4G35580 50.898 167 78 3 3 167 5 169 9.54e-49 172
MS.gene010605.t1 AT3G04070 53.676 136 55 3 6 136 8 140 7.05e-48 166
MS.gene010605.t1 AT3G15510 49.068 161 64 4 12 157 21 178 7.06e-48 166
MS.gene010605.t1 AT1G26870 45.143 175 78 4 2 162 10 180 9.68e-48 167
MS.gene010605.t1 AT5G13180 51.250 160 64 5 8 161 14 165 3.33e-47 160
MS.gene010605.t1 AT5G24590 53.247 154 68 4 8 158 13 165 3.87e-47 166
MS.gene010605.t1 AT3G49530 50.000 158 74 5 3 157 9 164 2.80e-46 162
MS.gene010605.t1 AT3G49530 50.000 158 74 5 3 157 9 164 5.92e-46 163
MS.gene010605.t1 AT1G32510 45.679 162 77 4 6 157 4 164 1.90e-45 157
MS.gene010605.t1 AT2G27300 42.690 171 91 3 1 171 7 170 3.72e-45 157
MS.gene010605.t1 AT2G02450 45.395 152 79 2 7 157 50 198 1.58e-44 157
MS.gene010605.t1 AT2G02450 45.395 152 79 2 7 157 50 198 2.13e-44 157
MS.gene010605.t1 AT1G34190 44.371 151 79 3 10 157 18 166 1.11e-42 155
MS.gene010605.t1 AT1G34180 45.865 133 71 1 10 142 18 149 1.39e-42 154
MS.gene010605.t1 AT5G22290 42.424 165 88 3 3 166 15 173 1.43e-42 151
MS.gene010605.t1 AT1G34180 45.865 133 71 1 10 142 18 149 3.38e-42 154
MS.gene010605.t1 AT5G64060 44.737 152 77 3 10 157 8 156 5.71e-42 150
MS.gene010605.t1 AT5G09330 46.053 152 75 3 10 157 8 156 2.26e-41 151
MS.gene010605.t1 AT5G09330 46.053 152 75 3 10 157 8 156 2.26e-41 151
MS.gene010605.t1 AT5G09330 46.053 152 75 3 10 157 8 156 2.26e-41 151
MS.gene010605.t1 AT5G09330 46.053 152 75 3 10 157 8 156 2.26e-41 151
MS.gene010605.t1 AT5G09330 46.053 152 75 3 10 157 8 156 2.26e-41 151
MS.gene010605.t1 AT3G12910 44.318 176 73 6 10 165 23 193 3.61e-41 146
MS.gene010605.t1 AT1G34180 43.056 144 71 2 10 142 18 161 3.77e-41 150
MS.gene010605.t1 AT1G52880 45.509 167 70 4 12 162 21 182 5.30e-41 146
MS.gene010605.t1 AT2G17040 42.208 154 80 3 10 160 8 155 7.05e-41 145
MS.gene010605.t1 AT1G34180 43.056 144 71 2 10 142 18 161 9.30e-41 150
MS.gene010605.t1 AT5G04395 44.516 155 73 3 3 144 23 177 1.48e-40 141
MS.gene010605.t1 AT1G56010 43.478 161 77 4 66 220 8 160 3.49e-39 140
MS.gene010605.t1 AT3G44290 44.800 125 67 1 10 134 16 138 1.60e-38 137
MS.gene010605.t1 AT3G44290 44.800 125 67 1 10 134 16 138 8.30e-38 138
MS.gene010605.t1 AT5G61430 61.224 98 34 2 64 157 6 103 1.25e-37 136
MS.gene010605.t1 AT1G32870 43.506 154 80 3 8 157 10 160 1.57e-36 138
MS.gene010605.t1 AT1G32870 43.506 154 80 3 8 157 10 160 1.71e-36 138
MS.gene010605.t1 AT3G12977 52.212 113 48 3 53 162 10 119 2.36e-36 131
MS.gene010605.t1 AT1G32870 43.506 154 80 3 8 157 46 196 2.76e-36 138
MS.gene010605.t1 AT2G33480 49.515 103 50 1 64 164 8 110 1.02e-30 116
MS.gene010605.t1 AT5G22380 43.478 138 68 5 4 134 1 135 2.84e-27 107
MS.gene010605.t1 AT4G28530 43.165 139 56 4 1 120 3 137 1.03e-26 108
MS.gene010605.t1 AT4G01520 37.748 151 85 5 9 154 5 151 4.82e-26 106
MS.gene010605.t1 AT3G44350 37.821 156 85 6 11 157 8 160 5.94e-26 104
MS.gene010605.t1 AT1G02230 42.941 170 83 9 9 170 4 167 6.38e-26 107
MS.gene010605.t1 AT3G44350 38.931 131 71 4 11 135 8 135 9.47e-26 101
MS.gene010605.t1 AT4G01540 37.584 149 84 5 11 154 7 151 8.62e-25 104
MS.gene010605.t1 AT4G01540 37.584 149 84 5 11 154 7 151 1.16e-24 104
MS.gene010605.t1 AT4G01540 37.584 149 84 5 11 154 7 151 1.18e-24 104
MS.gene010605.t1 AT4G01540 37.584 149 84 5 11 154 7 151 1.25e-24 103
MS.gene010605.t1 AT5G64530 32.961 179 87 6 8 168 3 166 1.80e-24 99.0
MS.gene010605.t1 AT4G01550 37.086 151 87 4 11 157 7 153 1.92e-24 103
MS.gene010605.t1 AT3G04420 40.310 129 72 3 9 134 4 130 4.28e-24 100
MS.gene010605.t1 AT1G02250 39.645 169 89 8 9 170 4 166 1.17e-23 100
MS.gene010605.t1 AT3G04420 40.310 129 72 3 9 134 4 130 1.51e-23 100
MS.gene010605.t1 AT5G64530 39.695 131 62 5 8 136 3 118 2.06e-23 95.1
MS.gene010605.t1 AT1G01010 37.662 154 78 7 11 153 6 152 9.88e-23 99.0
MS.gene010605.t1 AT2G43000 45.833 96 49 2 73 165 2 97 6.18e-22 92.4
MS.gene010605.t1 AT3G10490 35.971 139 79 3 84 219 2 133 8.92e-22 95.1
MS.gene010605.t1 AT3G10490 35.971 139 79 3 84 219 2 133 8.92e-22 95.1
MS.gene010605.t1 AT1G02220 39.231 130 71 4 8 134 3 127 8.66e-20 90.1
MS.gene010605.t1 AT5G50820 37.857 140 62 6 8 138 17 140 3.78e-19 84.7
MS.gene010605.t1 AT3G56530 27.815 151 105 2 7 155 51 199 6.64e-17 80.9
MS.gene010605.t1 AT5G22290 41.558 77 41 1 90 166 2 74 3.51e-15 74.7
MS.gene010605.t1 AT5G14000 26.786 168 115 3 8 173 15 176 1.08e-14 72.4
MS.gene010605.t1 AT5G14000 29.771 131 85 2 8 136 15 140 1.10e-13 68.6
MS.gene010605.t1 AT3G55210 24.699 166 108 5 3 155 6 167 2.17e-12 67.0
MS.gene010605.t1 AT3G04430 34.074 135 72 6 14 135 6 136 1.21e-11 63.5

Find 72 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATAAGATGAAACTAAT+TGG 0.196107 5.1:+12938169 MS.gene010605:CDS
AGGCTTGAATCTGATGAAAA+TGG 0.260946 5.1:+12938268 MS.gene010605:CDS
AGTTCAGATTGCAGTGATAT+TGG 0.262862 5.1:+12940397 MS.gene010605:CDS
TGTTACTGCAGCAGGGTAAT+AGG 0.270150 5.1:+12940338 MS.gene010605:CDS
GAGCTACCATGGCTGGGTTT+TGG 0.285122 5.1:+12938119 MS.gene010605:CDS
CAATCAGATTTCTGTCCATT+AGG 0.301864 5.1:-12938229 None:intergenic
AATCAGATTTCTGTCCATTA+GGG 0.308366 5.1:-12938228 None:intergenic
CTGTTAGTTCTTGTCCCTGT+TGG 0.308789 5.1:-12938097 None:intergenic
ATAATAATAGCAACCTGTTT+TGG 0.310133 5.1:-12940156 None:intergenic
CTTACACATGTTATAACTTT+GGG 0.324312 5.1:-12939999 None:intergenic
GTGCTTGGCCTCTTTACTAA+TGG 0.340736 5.1:-12940091 None:intergenic
GCTTACACATGTTATAACTT+TGG 0.349128 5.1:-12940000 None:intergenic
GTTCAGATTGCAGTGATATT+GGG 0.368792 5.1:+12940398 MS.gene010605:CDS
CTTGAGATTAGTTGATCAAT+TGG 0.382802 5.1:-12939956 None:intergenic
ATGATAAGATGAAACTAATT+GGG 0.389752 5.1:+12938170 MS.gene010605:CDS
ATTGGATCATGCATGAATAT+AGG 0.391373 5.1:+12938248 MS.gene010605:CDS
GGAGTGTTGTTGTCAAGTTT+TGG 0.392056 5.1:+12940280 MS.gene010605:CDS
GGCATTGATGTTACTGCAGC+AGG 0.393119 5.1:+12940330 MS.gene010605:CDS
GTTACTGCAGCAGGGTAATA+GGG 0.411682 5.1:+12940339 MS.gene010605:CDS
CTACAAATACAGTTACTGAT+TGG 0.424836 5.1:+12940200 MS.gene010605:CDS
CTTTGGGATAAATAGCTTTG+TGG 0.428438 5.1:-12939983 None:intergenic
CATGTGTCCCACCAGGGTTT+CGG 0.436059 5.1:+12937682 MS.gene010605:CDS
CCAACTGATGAAGAACTTGT+TGG 0.437262 5.1:+12937711 MS.gene010605:CDS
GAGAGCTCTTGATAAGTTTG+TGG 0.441089 5.1:+12940222 MS.gene010605:CDS
ACTAACAGAGCTACCATGGC+TGG 0.441475 5.1:+12938112 MS.gene010605:CDS
CTTCATTGCCATTAGTAAAG+AGG 0.446048 5.1:+12940083 MS.gene010605:CDS
ATGACATTAACGACCAAAAC+AGG 0.448853 5.1:+12940143 MS.gene010605:CDS
CTCTTTACTAATGGCAATGA+AGG 0.455370 5.1:-12940082 None:intergenic
GGTTTGTGCAGGAGGAAGGA+TGG 0.475889 5.1:+12939807 MS.gene010605:intron
ATGGAGTCATGTGTCCCACC+AGG 0.483355 5.1:+12937675 MS.gene010605:CDS
ATGAAATGGCAGAGAGATGC+AGG 0.483796 5.1:+12938017 MS.gene010605:intron
TACAAAGGAAGAGCCCCTAA+TGG 0.487100 5.1:+12938214 MS.gene010605:CDS
CCAACAAGTTCTTCATCAGT+TGG 0.496930 5.1:-12937711 None:intergenic
CAACAAGTTCTTCATCAGTT+GGG 0.501223 5.1:-12937710 None:intergenic
CTAATGGACAGAAATCTGAT+TGG 0.503538 5.1:+12938230 MS.gene010605:CDS
ATTGAACCATGGGATCTTCA+AGG 0.511774 5.1:+12937807 MS.gene010605:CDS
TGGCAGAGAGATGCAGGATC+GGG 0.511955 5.1:+12938023 MS.gene010605:intron
TCTTTATCGTATTGAACCAT+GGG 0.515850 5.1:+12937797 MS.gene010605:CDS
CTATGAAGAAGCTGCAAGTA+GGG 0.522407 5.1:+12939913 MS.gene010605:CDS
TGGTGGGACACATGACTCCA+TGG 0.525120 5.1:-12937673 None:intergenic
TGATGAAAATGGACCTCCAC+AGG 0.528524 5.1:+12938279 MS.gene010605:CDS
TACAAATAATAATCCTAGCT+CGG 0.532725 5.1:+12940303 MS.gene010605:CDS
ATCTTTATCGTATTGAACCA+TGG 0.534260 5.1:+12937796 MS.gene010605:CDS
ATGGCAGAGAGATGCAGGAT+CGG 0.542557 5.1:+12938022 MS.gene010605:intron
AGATGAAACTAATTGGGATG+AGG 0.547240 5.1:+12938176 MS.gene010605:CDS
GTTTGTGCAGGAGGAAGGAT+GGG 0.551208 5.1:+12939808 MS.gene010605:intron
ATATGGTTTGTGCAGGAGGA+AGG 0.551944 5.1:+12939803 MS.gene010605:intron
CGATCTCTCTGATAACATCA+AGG 0.569395 5.1:-12937773 None:intergenic
CACGAAGTTGAAACTGATCA+AGG 0.569671 5.1:+12940259 MS.gene010605:CDS
ATCAATGCCATGTCCGAGCT+AGG 0.574857 5.1:-12940316 None:intergenic
TAATAATCCTAGCTCGGACA+TGG 0.575690 5.1:+12940309 MS.gene010605:CDS
TCTATGAAGAAGCTGCAAGT+AGG 0.576413 5.1:+12939912 MS.gene010605:CDS
AAGCACAATGTCTCTAGTAT+CGG 0.584153 5.1:+12940108 MS.gene010605:CDS
GATACTAGAGACATTGTGCT+TGG 0.594750 5.1:-12940106 None:intergenic
CAATTGATCAACTAATCTCA+AGG 0.597995 5.1:+12939957 MS.gene010605:CDS
AAGAACTAACAGAGCTACCA+TGG 0.599903 5.1:+12938108 MS.gene010605:CDS
GTTGGGTGGAACCGAAACCC+TGG 0.606391 5.1:-12937693 None:intergenic
CAAGTTCTTCATCAGTTGGG+TGG 0.606733 5.1:-12937707 None:intergenic
ATCAGATTTCTGTCCATTAG+GGG 0.607393 5.1:-12938227 None:intergenic
GGTTGATTAGTTACCTGTGG+AGG 0.611776 5.1:-12938292 None:intergenic
TGGAGTCATGTGTCCCACCA+GGG 0.614596 5.1:+12937676 MS.gene010605:CDS
CTAACAGAGCTACCATGGCT+GGG 0.617618 5.1:+12938113 MS.gene010605:CDS
AAGTAGGGTCAACAATTCCA+TGG 0.625295 5.1:+12939928 MS.gene010605:CDS
TGTATACCTTGAAGATCCCA+TGG 0.629021 5.1:-12937813 None:intergenic
TTGATCAATTGGATCCACCA+TGG 0.632099 5.1:-12939945 None:intergenic
AATGAAGGACTTTCAAGCTG+TGG 0.646698 5.1:-12940067 None:intergenic
AGCTTTCCAAAACCCAGCCA+TGG 0.648009 5.1:-12938125 None:intergenic
GCATTGATGTTACTGCAGCA+GGG 0.654680 5.1:+12940331 MS.gene010605:CDS
GGTATGAAGAGCAGAATGAG+TGG 0.672358 5.1:+12938044 MS.gene010605:CDS
GGGTGGAACCGAAACCCTGG+TGG 0.689016 5.1:-12937690 None:intergenic
GGTGGAACCGAAACCCTGGT+GGG 0.689627 5.1:-12937689 None:intergenic
TAGGGTCAACAATTCCATGG+TGG 0.736574 5.1:+12939931 MS.gene010605:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTATTAATTAAAAATCA+TGG + chr5.1:12938507-12938526 MS.gene010605:intron 10.0%
!!! AAAAAATATATGATAATGTT+AGG - chr5.1:12938342-12938361 None:intergenic 10.0%
!! AAATAATTATGTGAATGAAA+TGG + chr5.1:12938003-12938022 MS.gene010605:intron 15.0%
!! ATGAAAGAAGAATTAATTAT+TGG - chr5.1:12938960-12938979 None:intergenic 15.0%
!! TCTTACTTAATTAAACTATA+TGG + chr5.1:12939786-12939805 MS.gene010605:intron 15.0%
!!! ACTTATTTATTCTTTTGAAT+CGG + chr5.1:12939480-12939499 MS.gene010605:intron 15.0%
!! AAAATTATGCAAAAGCTAAA+GGG + chr5.1:12939101-12939120 MS.gene010605:intron 20.0%
!! AATTGCATTTCAACTATATA+TGG - chr5.1:12937917-12937936 None:intergenic 20.0%
!! AGAAGGATATAAGTATTATA+TGG - chr5.1:12938316-12938335 None:intergenic 20.0%
!! ATACATAATATATGTAAGGT+TGG + chr5.1:12938634-12938653 MS.gene010605:intron 20.0%
!! ATGATAAGATGAAACTAATT+GGG + chr5.1:12938170-12938189 MS.gene010605:CDS 20.0%
!! GACAATACATAATATATGTA+AGG + chr5.1:12938630-12938649 MS.gene010605:intron 20.0%
!! TATGATAAGATGAAACTAAT+TGG + chr5.1:12938169-12938188 MS.gene010605:CDS 20.0%
!! TTAATTAAGTAAGAAACTTG+AGG - chr5.1:12939780-12939799 None:intergenic 20.0%
!!! AAAACCCTAATATTTTGTTA+GGG - chr5.1:12937875-12937894 None:intergenic 20.0%
!!! TTCTTTTGTTGATATGTATT+TGG - chr5.1:12939228-12939247 None:intergenic 20.0%
!!! TTGGATACTTTTTATCTTTA+TGG - chr5.1:12938081-12938100 None:intergenic 20.0%
!!! TTTACATTTTGATTGTCAAA+GGG + chr5.1:12939009-12939028 MS.gene010605:intron 20.0%
!!! TTTTCCCTAACAAAATATTA+GGG + chr5.1:12937868-12937887 MS.gene010605:intron 20.0%
! AAATGAATACAGATCAATCA+TGG - chr5.1:12937961-12937980 None:intergenic 25.0%
! AATCTCAACCAATAAAAAGA+TGG + chr5.1:12939576-12939595 MS.gene010605:intron 25.0%
! ACTTATCTATGAAATGTCAA+AGG + chr5.1:12938419-12938438 MS.gene010605:intron 25.0%
! CTTACACATGTTATAACTTT+GGG - chr5.1:12940002-12940021 None:intergenic 25.0%
! GAAAATTATGCAAAAGCTAA+AGG + chr5.1:12939100-12939119 MS.gene010605:intron 25.0%
! TACAAATAATAATCCTAGCT+CGG + chr5.1:12940303-12940322 MS.gene010605:CDS 25.0%
! TAGAAACACTAATAAGCAAA+AGG + chr5.1:12939143-12939162 MS.gene010605:intron 25.0%
! TCAACTAATTAATTGCATTG+AGG - chr5.1:12939040-12939059 None:intergenic 25.0%
! TCTATTACGACAAAAAGTTT+AGG - chr5.1:12939368-12939387 None:intergenic 25.0%
! TTTATGTAGTTATTACTGTC+TGG + chr5.1:12938753-12938772 MS.gene010605:intron 25.0%
! TTTGATCTTATAATCTCAAG+CGG + chr5.1:12938460-12938479 MS.gene010605:intron 25.0%
!! AATATTTTGTTAGGGAAAAG+AGG - chr5.1:12937867-12937886 None:intergenic 25.0%
!! ACAAAAAGTTTAGGTTTGTT+TGG - chr5.1:12939359-12939378 None:intergenic 25.0%
!! ATAATAATAGCAACCTGTTT+TGG - chr5.1:12940159-12940178 None:intergenic 25.0%
!! ATATTTTGTTAGGGAAAAGA+GGG - chr5.1:12937866-12937885 None:intergenic 25.0%
!! ATGATAATGTTAGGAATAGA+AGG - chr5.1:12938333-12938352 None:intergenic 25.0%
!! CAAAAAGTTTAGGTTTGTTT+GGG - chr5.1:12939358-12939377 None:intergenic 25.0%
!! CAAAACCCTAATATTTTGTT+AGG - chr5.1:12937876-12937895 None:intergenic 25.0%
!! CTTTTCCCTAACAAAATATT+AGG + chr5.1:12937867-12937886 MS.gene010605:intron 25.0%
!!! AAAAAGTACTATTGAAGGAT+GGG + chr5.1:12939877-12939896 MS.gene010605:CDS 25.0%
!!! AAAGATAAAAAGTATCCAAC+AGG + chr5.1:12938082-12938101 MS.gene010605:CDS 25.0%
!!! AAGATAAAAAGTATCCAACA+GGG + chr5.1:12938083-12938102 MS.gene010605:CDS 25.0%
!!! AGTACAAAAAGTACTATTGA+AGG + chr5.1:12939872-12939891 MS.gene010605:CDS 25.0%
!!! CAATAGTACTTTTTGTACTT+TGG - chr5.1:12939871-12939890 None:intergenic 25.0%
!!! GTCATTTTATTGACATTAGA+CGG + chr5.1:12939689-12939708 MS.gene010605:intron 25.0%
!!! GTGAACTACTCTTTTTTTTA+TGG - chr5.1:12938674-12938693 None:intergenic 25.0%
!!! GTTTACATTTTGATTGTCAA+AGG + chr5.1:12939008-12939027 MS.gene010605:intron 25.0%
!!! TTACATTTTGATTGTCAAAG+GGG + chr5.1:12939010-12939029 MS.gene010605:intron 25.0%
AATCAGATTTCTGTCCATTA+GGG - chr5.1:12938231-12938250 None:intergenic 30.0%
AATTCTATATGACTGTTCGT+AGG - chr5.1:12939641-12939660 None:intergenic 30.0%
ACATAAAGATCAAACTAGCA+TGG - chr5.1:12938740-12938759 None:intergenic 30.0%
ACATATAATCAGTGCATTTG+AGG + chr5.1:12939667-12939686 MS.gene010605:intron 30.0%
ATCTTTATCGTATTGAACCA+TGG + chr5.1:12937796-12937815 MS.gene010605:CDS 30.0%
ATTCTATATGACTGTTCGTA+GGG - chr5.1:12939640-12939659 None:intergenic 30.0%
ATTGGATCATGCATGAATAT+AGG + chr5.1:12938248-12938267 MS.gene010605:CDS 30.0%
CAATTGATCAACTAATCTCA+AGG + chr5.1:12939957-12939976 MS.gene010605:CDS 30.0%
CTACAAATACAGTTACTGAT+TGG + chr5.1:12940200-12940219 MS.gene010605:CDS 30.0%
GCTTACACATGTTATAACTT+TGG - chr5.1:12940003-12940022 None:intergenic 30.0%
GTAATAGAAATAAACTGCAG+CGG + chr5.1:12939380-12939399 MS.gene010605:intron 30.0%
TCTGAACTTGCATTCAAAAA+TGG - chr5.1:12940385-12940404 None:intergenic 30.0%
TCTTTATCGTATTGAACCAT+GGG + chr5.1:12937797-12937816 MS.gene010605:CDS 30.0%
! CAAAAGTGTGTAAGCATAAA+AGG - chr5.1:12938989-12939008 None:intergenic 30.0%
! CTTGAGATTAGTTGATCAAT+TGG - chr5.1:12939959-12939978 None:intergenic 30.0%
! GTTGCTTTATATTTCAGAAG+AGG - chr5.1:12939184-12939203 None:intergenic 30.0%
! TATTTTGTTAGGGAAAAGAG+GGG - chr5.1:12937865-12937884 None:intergenic 30.0%
! TGCATAATTTTCCATCAGTT+TGG - chr5.1:12939092-12939111 None:intergenic 30.0%
! TTAAACTATATGGTTTGTGC+AGG + chr5.1:12939796-12939815 MS.gene010605:intron 30.0%
!! CAAAAAGTACTATTGAAGGA+TGG + chr5.1:12939876-12939895 MS.gene010605:CDS 30.0%
!!! AAGACTCTAGTTTTCTACAA+AGG + chr5.1:12938199-12938218 MS.gene010605:CDS 30.0%
!!! ACTACTCTTTTTTTTATGGC+CGG - chr5.1:12938670-12938689 None:intergenic 30.0%
!!! ATGACTTTTGACTTGTTGTT+TGG - chr5.1:12938926-12938945 None:intergenic 30.0%
AAGCACAATGTCTCTAGTAT+CGG + chr5.1:12940108-12940127 MS.gene010605:CDS 35.0%
ACCAATAAAAAGATGGTGTG+TGG + chr5.1:12939583-12939602 MS.gene010605:intron 35.0%
AGATCAAACTCTTACCATTC+AGG - chr5.1:12938448-12938467 None:intergenic 35.0%
AGATGAAACTAATTGGGATG+AGG + chr5.1:12938176-12938195 MS.gene010605:CDS 35.0%
AGGCTTGAATCTGATGAAAA+TGG + chr5.1:12938268-12938287 MS.gene010605:CDS 35.0%
AGTGTGTAAGCATAAAAGGA+AGG - chr5.1:12938985-12939004 None:intergenic 35.0%
AGTTCAGATTGCAGTGATAT+TGG + chr5.1:12940397-12940416 MS.gene010605:CDS 35.0%
ATCAGATTTCTGTCCATTAG+GGG - chr5.1:12938230-12938249 None:intergenic 35.0%
ATGACATTAACGACCAAAAC+AGG + chr5.1:12940143-12940162 MS.gene010605:CDS 35.0%
CAACAAGTTCTTCATCAGTT+GGG - chr5.1:12937713-12937732 None:intergenic 35.0%
CAATCAGATTTCTGTCCATT+AGG - chr5.1:12938232-12938251 None:intergenic 35.0%
CTCTTTACTAATGGCAATGA+AGG - chr5.1:12940085-12940104 None:intergenic 35.0%
CTTCATTGCCATTAGTAAAG+AGG + chr5.1:12940083-12940102 MS.gene010605:CDS 35.0%
GTAAGAAACTTGAGGAAAGA+TGG - chr5.1:12939772-12939791 None:intergenic 35.0%
GTGTGTAAGCATAAAAGGAA+GGG - chr5.1:12938984-12939003 None:intergenic 35.0%
GTTCAGATTGCAGTGATATT+GGG + chr5.1:12940398-12940417 MS.gene010605:CDS 35.0%
TCAACTGAACTAAACTAACG+AGG - chr5.1:12938606-12938625 None:intergenic 35.0%
TTTGGGTATGCTAAACTATG+AGG - chr5.1:12939341-12939360 None:intergenic 35.0%
! ATTTTGTTAGGGAAAAGAGG+GGG - chr5.1:12937864-12937883 None:intergenic 35.0%
! CTAATGGACAGAAATCTGAT+TGG + chr5.1:12938230-12938249 MS.gene010605:CDS 35.0%
! TATGGTTGATTAGTTACCTG+TGG - chr5.1:12938298-12938317 None:intergenic 35.0%
! TCCACACACCATCTTTTTAT+TGG - chr5.1:12939587-12939606 None:intergenic 35.0%
!! ATGCACTGATTATATGTCTG+TGG - chr5.1:12939664-12939683 None:intergenic 35.0%
!! CTTTGGGATAAATAGCTTTG+TGG - chr5.1:12939986-12940005 None:intergenic 35.0%
!!! CTACTCTTTTTTTTATGGCC+GGG - chr5.1:12938669-12938688 None:intergenic 35.0%
AAGAACTAACAGAGCTACCA+TGG + chr5.1:12938108-12938127 MS.gene010605:CDS 40.0%
AAGTAGGGTCAACAATTCCA+TGG + chr5.1:12939928-12939947 MS.gene010605:CDS 40.0%
AATGAAGGACTTTCAAGCTG+TGG - chr5.1:12940070-12940089 None:intergenic 40.0%
AATGTCAAAGGTCACCTGAA+TGG + chr5.1:12938431-12938450 MS.gene010605:intron 40.0%
ACCACTCTAAACGTTCAACA+AGG + chr5.1:12938868-12938887 MS.gene010605:intron 40.0%
ATTGAACCATGGGATCTTCA+AGG + chr5.1:12937807-12937826 MS.gene010605:CDS 40.0%
CACGAAGTTGAAACTGATCA+AGG + chr5.1:12940259-12940278 MS.gene010605:CDS 40.0%
CCAACAAGTTCTTCATCAGT+TGG - chr5.1:12937714-12937733 None:intergenic 40.0%
CCAACTGATGAAGAACTTGT+TGG + chr5.1:12937711-12937730 MS.gene010605:CDS 40.0%
CGATCTCTCTGATAACATCA+AGG - chr5.1:12937776-12937795 None:intergenic 40.0%
CTATGAAGAAGCTGCAAGTA+GGG + chr5.1:12939913-12939932 MS.gene010605:CDS 40.0%
GAGAGCTCTTGATAAGTTTG+TGG + chr5.1:12940222-12940241 MS.gene010605:CDS 40.0%
GATACTAGAGACATTGTGCT+TGG - chr5.1:12940109-12940128 None:intergenic 40.0%
GATCTTATAATCTCAAGCGG+CGG + chr5.1:12938463-12938482 MS.gene010605:intron 40.0%
TAAGGTTGGAGTTCAAATCC+CGG + chr5.1:12938648-12938667 MS.gene010605:intron 40.0%
TAATAATCCTAGCTCGGACA+TGG + chr5.1:12940309-12940328 MS.gene010605:CDS 40.0%
TCTATGAAGAAGCTGCAAGT+AGG + chr5.1:12939912-12939931 MS.gene010605:CDS 40.0%
TGTATACCTTGAAGATCCCA+TGG - chr5.1:12937816-12937835 None:intergenic 40.0%
TTGATCAATTGGATCCACCA+TGG - chr5.1:12939948-12939967 None:intergenic 40.0%
! AACTATATGGTTTGTGCAGG+AGG + chr5.1:12939799-12939818 MS.gene010605:intron 40.0%
! TTGAACGTTTAGAGTGGTCT+AGG - chr5.1:12938866-12938885 None:intergenic 40.0%
!! TTTTCCATCAGTTTGGTGAG+AGG - chr5.1:12939085-12939104 None:intergenic 40.0%
!!! GGAGTGTTGTTGTCAAGTTT+TGG + chr5.1:12940280-12940299 MS.gene010605:CDS 40.0%
ACTACCTCTCACCAAACTGA+TGG + chr5.1:12939078-12939097 MS.gene010605:intron 45.0%
ATGAAATGGCAGAGAGATGC+AGG + chr5.1:12938017-12938036 MS.gene010605:intron 45.0%
CAAGTTCTTCATCAGTTGGG+TGG - chr5.1:12937710-12937729 None:intergenic 45.0%
GGTATGAAGAGCAGAATGAG+TGG + chr5.1:12938044-12938063 MS.gene010605:CDS 45.0%
GTGCTTGGCCTCTTTACTAA+TGG - chr5.1:12940094-12940113 None:intergenic 45.0%
GTTACTGCAGCAGGGTAATA+GGG + chr5.1:12940339-12940358 MS.gene010605:CDS 45.0%
TACAAAGGAAGAGCCCCTAA+TGG + chr5.1:12938214-12938233 MS.gene010605:CDS 45.0%
TAGGGTCAACAATTCCATGG+TGG + chr5.1:12939931-12939950 MS.gene010605:CDS 45.0%
TGACTGTTCGTAGGGAATCT+AGG - chr5.1:12939632-12939651 None:intergenic 45.0%
TGATGAAAATGGACCTCCAC+AGG + chr5.1:12938279-12938298 MS.gene010605:CDS 45.0%
TGTTACTGCAGCAGGGTAAT+AGG + chr5.1:12940338-12940357 MS.gene010605:CDS 45.0%
! AGTCAGAGACGTGGGTATTT+TGG + chr5.1:12939409-12939428 MS.gene010605:intron 45.0%
! ATATGGTTTGTGCAGGAGGA+AGG + chr5.1:12939803-12939822 MS.gene010605:intron 45.0%
! CTGTTAGTTCTTGTCCCTGT+TGG - chr5.1:12938100-12938119 None:intergenic 45.0%
! GCATTGATGTTACTGCAGCA+GGG + chr5.1:12940331-12940350 MS.gene010605:CDS 45.0%
! GCCTTGTTGAACGTTTAGAG+TGG - chr5.1:12938872-12938891 None:intergenic 45.0%
! GGTTGATTAGTTACCTGTGG+AGG - chr5.1:12938295-12938314 None:intergenic 45.0%
! GTTTGGTGAGAGGTAGTAGT+AGG - chr5.1:12939075-12939094 None:intergenic 45.0%
ACTAACAGAGCTACCATGGC+TGG + chr5.1:12938112-12938131 MS.gene010605:CDS 50.0%
AGCTTTCCAAAACCCAGCCA+TGG - chr5.1:12938128-12938147 None:intergenic 50.0%
ATCAATGCCATGTCCGAGCT+AGG - chr5.1:12940319-12940338 None:intergenic 50.0%
ATGGCAGAGAGATGCAGGAT+CGG + chr5.1:12938022-12938041 MS.gene010605:intron 50.0%
CTAACAGAGCTACCATGGCT+GGG + chr5.1:12938113-12938132 MS.gene010605:CDS 50.0%
GTTTGTGCAGGAGGAAGGAT+GGG + chr5.1:12939808-12939827 MS.gene010605:intron 50.0%
!! GGCATTGATGTTACTGCAGC+AGG + chr5.1:12940330-12940349 MS.gene010605:CDS 50.0%
!!! GCTGGGTTTTGGAAAGCTAC+AGG + chr5.1:12938130-12938149 MS.gene010605:CDS 50.0%
ATGGAGTCATGTGTCCCACC+AGG + chr5.1:12937675-12937694 MS.gene010605:CDS 55.0%
CATGTGTCCCACCAGGGTTT+CGG + chr5.1:12937682-12937701 MS.gene010605:CDS 55.0%
GGTTCTGCAGTCAGAGACGT+GGG + chr5.1:12939401-12939420 MS.gene010605:intron 55.0%
GGTTTGTGCAGGAGGAAGGA+TGG + chr5.1:12939807-12939826 MS.gene010605:intron 55.0%
TGGAGTCATGTGTCCCACCA+GGG + chr5.1:12937676-12937695 MS.gene010605:CDS 55.0%
TGGCAGAGAGATGCAGGATC+GGG + chr5.1:12938023-12938042 MS.gene010605:intron 55.0%
TGGTGGGACACATGACTCCA+TGG - chr5.1:12937676-12937695 None:intergenic 55.0%
! GAGCTACCATGGCTGGGTTT+TGG + chr5.1:12938119-12938138 MS.gene010605:CDS 55.0%
CGGTTCTGCAGTCAGAGACG+TGG + chr5.1:12939400-12939419 MS.gene010605:intron 60.0%
GGTGGAACCGAAACCCTGGT+GGG - chr5.1:12937692-12937711 None:intergenic 60.0%
GTTGGGTGGAACCGAAACCC+TGG - chr5.1:12937696-12937715 None:intergenic 60.0%
GGGTGGAACCGAAACCCTGG+TGG - chr5.1:12937693-12937712 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 12937666 12940441 12937666 ID=MS.gene010605
chr5.1 mRNA 12937666 12940441 12937666 ID=MS.gene010605.t1;Parent=MS.gene010605
chr5.1 exon 12937666 12937828 12937666 ID=MS.gene010605.t1.exon1;Parent=MS.gene010605.t1
chr5.1 CDS 12937666 12937828 12937666 ID=cds.MS.gene010605.t1;Parent=MS.gene010605.t1
chr5.1 exon 12938029 12938300 12938029 ID=MS.gene010605.t1.exon2;Parent=MS.gene010605.t1
chr5.1 CDS 12938029 12938300 12938029 ID=cds.MS.gene010605.t1;Parent=MS.gene010605.t1
chr5.1 exon 12939818 12940441 12939818 ID=MS.gene010605.t1.exon3;Parent=MS.gene010605.t1
chr5.1 CDS 12939818 12940441 12939818 ID=cds.MS.gene010605.t1;Parent=MS.gene010605.t1
Gene Sequence

>MS.gene010605

ATGGAGTCCATGGAGTCATGTGTCCCACCAGGGTTTCGGTTCCACCCAACTGATGAAGAACTTGTTGGCTATTATCTCAGAAAGAAAATTGCTTCTCAGAAAATTGACCTTGATGTTATCAGAGAGATCGATCTTTATCGTATTGAACCATGGGATCTTCAAGGTATACACACATATACATACAAATACTTTTCTCCCCCTCTTTTCCCTAACAAAATATTAGGGTTTTGAAGATCTAATATATATGACCATATATAGTTGAAATGCAATTTAGAACTATGATAGTAATTAACCATGATTGATCTGTATTCATTTTTTGTTTTTGTCTATAAAAGTTAAATAATTATGTGAATGAAATGGCAGAGAGATGCAGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTTTTCAGCCATAAAGATAAAAAGTATCCAACAGGGACAAGAACTAACAGAGCTACCATGGCTGGGTTTTGGAAAGCTACAGGAAGAGATAAAGCAGTTTATGATAAGATGAAACTAATTGGGATGAGGAAGACTCTAGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAATCTGATTGGATCATGCATGAATATAGGCTTGAATCTGATGAAAATGGACCTCCACAGGTAACTAATCAACCATATAATACTTATATCCTTCTATTCCTAACATTATCATATATTTTTTCATAATAAATTCGAGTAGTTTTCAACTTTTAAATATTATCTTATAGAGTAGTTCTTGACTTATCTATGAAATGTCAAAGGTCACCTGAATGGTAAGAGTTTGATCTTATAATCTCAAGCGGCGGAGTTTAATTAAATTCTTTTGAAAACTATTAATTAAAAATCATGGTATGTAACTACTAATTATATCTCAAATTAAAAATTTGTAAAATGATTATTTGTGTCATTTTAATAAAGAGTGTCCTCGTTAGTTTAGTTCAGTTGATAAAGACAATACATAATATATGTAAGGTTGGAGTTCAAATCCCGGCCATAAAAAAAAGAGTAGTTCACGACTTCATTCTCTTTTATTTTCTTTTCACATTTTTCTTTGTAGCCATGCTAGTTTGATCTTTATGTAGTTATTACTGTCTGGCTAGTGCTTCAATGTGATGTCACTACTACTTATTCTAAATGCAGATCGTGCAAACTTTCTTTCTCTATTACTCACTTTCGCTTTTTTCCTAGACCACTCTAAACGTTCAACAAGGCACGTACACGCTTTCTTCAAACATAACTTTCACCAAACAACAAGTCAAAAGTCATTCTTTCAACAGCCAATAATTAATTCTTCTTTCATTCCCTTCCTTTTATGCTTACACACTTTTGTTTACATTTTGATTGTCAAAGGGGTAAACCTCAATGCAATTAATTAGTTGACTACATATACAACCTACTACTACCTCTCACCAAACTGATGGAAAATTATGCAAAAGCTAAAGGGACAACAAAACACATTAAAATAGAAACACTAATAAGCAAAAGGAGTAACTATTTTTTTCCTCTTCTGAAATATAAAGCAACTCTAGTCAACTCAAAGTCAAACCAAATACATATCAACAAAAGAAGATGATTGTGTCAACTGTCATCAACACATGTAATTAACACTCTTTTTTAATGTACTCATTCATATTACTTGAACTTGATTGTTGACTATGCCTCATAGTTTAGCATACCCAAACAAACCTAAACTTTTTGTCGTAATAGAAATAAACTGCAGCGGTTCTGCAGTCAGAGACGTGGGTATTTTGGTCAAACTTTGTCAACAAAGCATTTTGTACTTTTTTTATGTACATTTTCACTTATTTATTCTTTTGAATCGGAATTGTTGTTCATACATAATTTTATATATCGTTCTGAAAATAAGTCTATTGTAAATCTATAGAAACTCAAGTGAATCTCAACCAATAAAAAGATGGTGTGTGGAAAAAAATTCTCGAAAGAAGTGACCTAGATTCCCTACGAACAGTCATATAGAATTCCACAGACATATAATCAGTGCATTTGAGGTCATTTTATTGACATTAGACGGTCTAGATTTGAAATTCGCTAAATATATTTATGCAGACACTATTTAATAGTAGAGAATCCATCTTTCCTCAAGTTTCTTACTTAATTAAACTATATGGTTTGTGCAGGAGGAAGGATGGGTAGTGTGTAGAGCATTTAAGAAAAGAACAACAAATAGCCAAAGTACAAAAAGTACTATTGAAGGATGGGACACAAGCTACTTCTATGAAGAAGCTGCAAGTAGGGTCAACAATTCCATGGTGGATCCAATTGATCAACTAATCTCAAGGCAACCACAAAGCTATTTATCCCAAAGTTATAACATGTGTAAGCAAGAGATAGAAGCATGCATGCATGCAGAACAATTTTTGCAGCTTCCACAGCTTGAAAGTCCTTCATTGCCATTAGTAAAGAGGCCAAGCACAATGTCTCTAGTATCGGACAATAATAACGATGACATTAACGACCAAAACAGGTTGCTATTATTATCGAACAACAACGATAATATTACTACAAATACAGTTACTGATTGGAGAGCTCTTGATAAGTTTGTGGCTTCTCAACTGAGTCACGAAGTTGAAACTGATCAAGGAGTGTTGTTGTCAAGTTTTGGTACAAATAATAATCCTAGCTCGGACATGGCATTGATGTTACTGCAGCAGGGTAATAGGGATGAAGAGAACAAGTTAAGTCCATTTTTGAATGCAAGTTCAGATTGCAGTGATATTGGGATATGCGTATTTGAAAAATGA
Protein sequence

>MS.gene010605.t1

MESMESCVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKMKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKRTTNSQSTKSTIEGWDTSYFYEEAASRVNNSMVDPIDQLISRQPQSYLSQSYNMCKQEIEACMHAEQFLQLPQLESPSLPLVKRPSTMSLVSDNNNDDINDQNRLLLLSNNNDNITTNTVTDWRALDKFVASQLSHEVETDQGVLLSSFGTNNNPSSDMALMLLQQGNRDEENKLSPFLNASSDCSDIGICVFEK