Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010608.t1 | XP_003612141.1 | 99.7 | 369 | 1 | 0 | 1 | 369 | 1 | 369 | 6.50E-211 | 743 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010608.t1 | Q9SNY3 | 86.2 | 356 | 47 | 2 | 15 | 369 | 7 | 361 | 1.1e-179 | 630.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010608.t1 | G7JW51 | 99.7 | 369 | 1 | 0 | 1 | 369 | 1 | 369 | 4.7e-211 | 743.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010608 | MS.gene20834 | PPI |
| MS.gene20783 | MS.gene010608 | PPI |
| MS.gene010608 | MS.gene073336 | PPI |
| MS.gene012318 | MS.gene010608 | PPI |
| MS.gene010608 | MS.gene07262 | PPI |
| MS.gene96326 | MS.gene010608 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010608.t1 | MTR_5g021760 | 99.729 | 369 | 1 | 0 | 1 | 369 | 1 | 369 | 0.0 | 768 |
| MS.gene010608.t1 | MTR_5g021770 | 98.916 | 369 | 4 | 0 | 1 | 369 | 1 | 369 | 0.0 | 763 |
| MS.gene010608.t1 | MTR_4g120030 | 25.000 | 336 | 198 | 12 | 23 | 344 | 110 | 405 | 5.50e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010608.t1 | AT5G66280 | 85.754 | 358 | 49 | 2 | 13 | 369 | 5 | 361 | 0.0 | 650 |
| MS.gene010608.t1 | AT3G51160 | 85.511 | 352 | 50 | 1 | 18 | 369 | 23 | 373 | 0.0 | 647 |
| MS.gene010608.t1 | AT2G47650 | 24.490 | 343 | 202 | 13 | 23 | 346 | 118 | 422 | 1.46e-11 | 65.9 |
| MS.gene010608.t1 | AT3G62830 | 23.964 | 338 | 202 | 12 | 26 | 346 | 121 | 420 | 4.27e-11 | 64.3 |
| MS.gene010608.t1 | AT3G62830 | 23.964 | 338 | 202 | 12 | 26 | 346 | 121 | 420 | 4.27e-11 | 64.3 |
| MS.gene010608.t1 | AT2G47650 | 25.788 | 349 | 196 | 16 | 23 | 346 | 118 | 428 | 5.20e-11 | 64.3 |
Find 89 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGAAGTTGATAATCTTAA+AGG | 0.194040 | 5.1:-12973055 | MS.gene010608:CDS |
| CGCGGTTTCGTTTGAGATTC+CGG | 0.236158 | 5.1:-12974049 | MS.gene010608:CDS |
| CTTCAGAGTAAGTTGTTTCT+TGG | 0.283233 | 5.1:-12973283 | MS.gene010608:CDS |
| AGTTTGATGAACGGCGAATT+AGG | 0.310934 | 5.1:+12974235 | None:intergenic |
| AGTAAAGCTAAGAAAGTTCT+TGG | 0.327387 | 5.1:-12973025 | MS.gene010608:CDS |
| CGTTTGTTGTAGACGGTGTT+GGG | 0.332541 | 5.1:+12974367 | None:intergenic |
| TCCGTCTTGGCCTGTGATTC+CGG | 0.355877 | 5.1:+12974305 | None:intergenic |
| TTGGTTATGTTGGATTGAAT+TGG | 0.372375 | 5.1:-12973117 | MS.gene010608:CDS |
| ACCTAAGCGCGTCAAGAGAT+TGG | 0.381294 | 5.1:-12973258 | MS.gene010608:CDS |
| CCTAAGCGCGTCAAGAGATT+GGG | 0.391497 | 5.1:-12973257 | MS.gene010608:CDS |
| GCTGGATCTTCCGAAATGTT+TGG | 0.393610 | 5.1:-12973925 | MS.gene010608:CDS |
| TGGAGTTGATCCAAACATTT+CGG | 0.395979 | 5.1:+12973915 | None:intergenic |
| GCGAGATTGTAAACTTCATC+AGG | 0.399238 | 5.1:+12974087 | None:intergenic |
| AACAAAGGCTACTCCGTTCA+TGG | 0.410210 | 5.1:-12974258 | MS.gene010608:CDS |
| TCAAGAGATTGGGGATTTGC+TGG | 0.414027 | 5.1:-12973247 | MS.gene010608:CDS |
| GAAGTTGCATTTGGTTATGT+TGG | 0.417505 | 5.1:-12973127 | MS.gene010608:CDS |
| ACTGCTGATGTTGTTGCTAC+TGG | 0.423498 | 5.1:-12974021 | MS.gene010608:CDS |
| GTGAATTACCGTGAAGCATA+TGG | 0.425833 | 5.1:-12973412 | MS.gene010608:CDS |
| CCGTTTGTTGTAGACGGTGT+TGG | 0.435086 | 5.1:+12974366 | None:intergenic |
| AAACGACTCCGTTTCATCCT+CGG | 0.435536 | 5.1:-12973879 | MS.gene010608:CDS |
| GTACCAATGCGCAGCAACTT+TGG | 0.435946 | 5.1:+12973840 | None:intergenic |
| AGAGGAAGCGTCGGAGAGAT+CGG | 0.436145 | 5.1:+12974137 | None:intergenic |
| AAGCTAAGAAAGTTCTTGGT+TGG | 0.448425 | 5.1:-12973021 | MS.gene010608:CDS |
| GTCGTTTCAGACTGCGGCGG+TGG | 0.449259 | 5.1:+12973895 | None:intergenic |
| ACGCTTCCTCTCTCCGTCGC+TGG | 0.449912 | 5.1:-12974125 | MS.gene010608:CDS |
| CCCAATCTCTTGACGCGCTT+AGG | 0.450001 | 5.1:+12973257 | None:intergenic |
| CCTCCAAAGTTGCTGCGCAT+TGG | 0.450320 | 5.1:-12973843 | MS.gene010608:intron |
| CCGTTAGGTATGATCCGTCT+TGG | 0.470101 | 5.1:+12974292 | None:intergenic |
| TGATGTTGAGATGGCTAAGA+AGG | 0.472951 | 5.1:-12972951 | MS.gene010608:CDS |
| GAGAAAGTGCTTGTTGATGC+TGG | 0.479756 | 5.1:-12972929 | MS.gene010608:CDS |
| CGATCTCATATCGATGCAAC+GGG | 0.483378 | 5.1:-12973973 | MS.gene010608:CDS |
| CACATTCGGTACTATCAAGC+TGG | 0.485404 | 5.1:-12973943 | MS.gene010608:CDS |
| AGTTCTTGGTTGGAAACCTA+AGG | 0.486640 | 5.1:-12973011 | MS.gene010608:CDS |
| GAGGAGAGAATTTCGTTACA+AGG | 0.489476 | 5.1:-12973342 | MS.gene010608:CDS |
| GATGTGGTTGATGCTACAAC+AGG | 0.492498 | 5.1:-12973209 | MS.gene010608:CDS |
| TGTTGAGGAGGAATTCCGTT+AGG | 0.497000 | 5.1:+12974277 | None:intergenic |
| TGAAGAGCTTGTTAGAATGA+TGG | 0.497175 | 5.1:-12972981 | MS.gene010608:CDS |
| ACAACATCAGCAGTGTAATC+CGG | 0.499435 | 5.1:+12974030 | None:intergenic |
| AGGAAGATTACTAGAGCTGT+TGG | 0.503091 | 5.1:-12973322 | MS.gene010608:CDS |
| AGCTCTTCAAAACTAACCTT+AGG | 0.505928 | 5.1:+12972995 | None:intergenic |
| GCATTAATCACCGGAATCAC+AGG | 0.515624 | 5.1:-12974315 | MS.gene010608:CDS |
| AATGCGACTTTACGCGGTGG+AGG | 0.517057 | 5.1:+12974333 | None:intergenic |
| CCAACACCGTCTACAACAAA+CGG | 0.524963 | 5.1:-12974366 | MS.gene010608:CDS |
| TTAAGATTATCAACTTCAGT+AGG | 0.526518 | 5.1:+12973058 | None:intergenic |
| GCAACTTTGGAGGCGGCGTA+AGG | 0.533507 | 5.1:+12973853 | None:intergenic |
| TAAGGAGACCGAGGATGAAA+CGG | 0.539744 | 5.1:+12973871 | None:intergenic |
| GTCGAGCCAGCGACGGAGAG+AGG | 0.549312 | 5.1:+12974119 | None:intergenic |
| CTGTTGGAAGAATCAAGATC+GGG | 0.549995 | 5.1:-12973306 | MS.gene010608:CDS |
| CAACGGGAAGATCTCACATT+CGG | 0.556721 | 5.1:-12973957 | MS.gene010608:CDS |
| CGGAGTAGCCTTTGTTGAGG+AGG | 0.561578 | 5.1:+12974265 | None:intergenic |
| GTTGATGCTACAACAGGAAA+AGG | 0.563273 | 5.1:-12973203 | MS.gene010608:CDS |
| GCGACGGAGAGAGGAAGCGT+CGG | 0.564242 | 5.1:+12974128 | None:intergenic |
| ATCGGACAGCTTCAAGAAGA+CGG | 0.566546 | 5.1:+12973992 | None:intergenic |
| GTGATTAATGCGACTTTACG+CGG | 0.567516 | 5.1:+12974327 | None:intergenic |
| ATGCGCAGCAACTTTGGAGG+CGG | 0.573375 | 5.1:+12973846 | None:intergenic |
| CCAATGCGCAGCAACTTTGG+AGG | 0.573498 | 5.1:+12973843 | None:intergenic |
| GCTGTTGGAAGAATCAAGAT+CGG | 0.576069 | 5.1:-12973307 | MS.gene010608:CDS |
| GATTATCAACTTCAGTAGGA+CGG | 0.577125 | 5.1:+12973062 | None:intergenic |
| CCGATCTCATATCGATGCAA+CGG | 0.578172 | 5.1:-12973974 | MS.gene010608:CDS |
| GACTTTACGCGGTGGAGGAG+TGG | 0.582219 | 5.1:+12974338 | None:intergenic |
| GTGTCGCCGTTTGTTGTAGA+CGG | 0.589361 | 5.1:+12974360 | None:intergenic |
| GGTTGATAATGATGTTGAGA+TGG | 0.603211 | 5.1:-12972960 | MS.gene010608:CDS |
| CGCTGCACAGTCACATGTCG+CGG | 0.614190 | 5.1:-12974067 | MS.gene010608:CDS |
| GTGATTATGTTGAAGCGATG+TGG | 0.617088 | 5.1:-12973225 | MS.gene010608:CDS |
| TGAGCTTTGTGAGCGTTGTG+TGG | 0.617112 | 5.1:+12974177 | None:intergenic |
| ACCGGAATCACAGGCCAAGA+CGG | 0.619372 | 5.1:-12974306 | MS.gene010608:CDS |
| GTTTGTTGTAGACGGTGTTG+GGG | 0.619696 | 5.1:+12974368 | None:intergenic |
| CGTAAAGTCGCATTAATCAC+CGG | 0.619954 | 5.1:-12974324 | MS.gene010608:CDS |
| GGCGACAGAGGATTCGCATA+CGG | 0.622538 | 5.1:-12973164 | MS.gene010608:CDS |
| GTGTGTTGAAGTTTGATGAA+CGG | 0.622841 | 5.1:+12974226 | None:intergenic |
| AGAAAGTGCTTGTTGATGCT+GGG | 0.623449 | 5.1:-12972928 | MS.gene010608:CDS |
| GAATAGTGTCGAGCCAGCGA+CGG | 0.624533 | 5.1:+12974112 | None:intergenic |
| ACGGAATTCCTCCTCAACAA+AGG | 0.626654 | 5.1:-12974273 | MS.gene010608:CDS |
| GAACGGAGTAGCCTTTGTTG+AGG | 0.627363 | 5.1:+12974262 | None:intergenic |
| TTATGTTGGATTGAATTGGA+AGG | 0.637434 | 5.1:-12973113 | MS.gene010608:CDS |
| CCGTTGCATCGATATGAGAT+CGG | 0.642154 | 5.1:+12973974 | None:intergenic |
| CTAAGCGCGTCAAGAGATTG+GGG | 0.642293 | 5.1:-12973256 | MS.gene010608:CDS |
| AACGGAGTCGTTTCAGACTG+CGG | 0.644350 | 5.1:+12973889 | None:intergenic |
| ACGGCGAATTAGGCCATGAA+CGG | 0.650770 | 5.1:+12974245 | None:intergenic |
| CGAGATTGTAAACTTCATCA+GGG | 0.657924 | 5.1:+12974088 | None:intergenic |
| CCAAGACGGATCATACCTAA+CGG | 0.664395 | 5.1:-12974292 | MS.gene010608:CDS |
| GACAGAGGATTCGCATACGG+TGG | 0.672210 | 5.1:-12973161 | MS.gene010608:CDS |
| AATCATGAGTCACCACGTAG+AGG | 0.675384 | 5.1:-12973361 | MS.gene010608:CDS |
| ACGAAATTCTCTCCTCTACG+TGG | 0.681620 | 5.1:+12973349 | None:intergenic |
| TGATTATGTTGTGGCGACAG+AGG | 0.688973 | 5.1:-12973176 | MS.gene010608:CDS |
| GAGGCGGCGTAAGGAGACCG+AGG | 0.699155 | 5.1:+12973862 | None:intergenic |
| ATTAATGCGACTTTACGCGG+TGG | 0.709409 | 5.1:+12974330 | None:intergenic |
| AAAGGCTGATGATTATGTTG+TGG | 0.716548 | 5.1:-12973185 | MS.gene010608:CDS |
| GGAGTCGTTTCAGACTGCGG+CGG | 0.740688 | 5.1:+12973892 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAACTTTTATGGATTTAAT+AGG | - | chr5.1:12973850-12973869 | MS.gene010608:CDS | 20.0% |
| !!! | TGATATGTAACTAACTTTTA+TGG | - | chr5.1:12973840-12973859 | MS.gene010608:intron | 20.0% |
| ! | TTAAGATTATCAACTTCAGT+AGG | + | chr5.1:12974236-12974255 | None:intergenic | 25.0% |
| ! | TTACTACATATAAGTATAGC+TGG | + | chr5.1:12973561-12973580 | None:intergenic | 25.0% |
| !! | TATGGAATTTTTGCTTGTAA+CGG | - | chr5.1:12973897-12973916 | MS.gene010608:CDS | 25.0% |
| !!! | ACTGAAGTTGATAATCTTAA+AGG | - | chr5.1:12974236-12974255 | MS.gene010608:CDS | 25.0% |
| !!! | AGTTTTTCGACATATCTAAT+AGG | - | chr5.1:12973792-12973811 | MS.gene010608:intron | 25.0% |
| AGTAAAGCTAAGAAAGTTCT+TGG | - | chr5.1:12974266-12974285 | MS.gene010608:CDS | 30.0% | |
| CAAAAATTCCATATGCTTCA+CGG | + | chr5.1:12973890-12973909 | None:intergenic | 30.0% | |
| TTATGTTGGATTGAATTGGA+AGG | - | chr5.1:12974178-12974197 | MS.gene010608:CDS | 30.0% | |
| TTGGTTATGTTGGATTGAAT+TGG | - | chr5.1:12974174-12974193 | MS.gene010608:CDS | 30.0% | |
| ! | ACTAACTTTTACATCTCGAA+TGG | - | chr5.1:12973689-12973708 | MS.gene010608:intron | 30.0% |
| ! | CTAACTTTTACATCTCGAAT+AGG | - | chr5.1:12973690-12973709 | MS.gene010608:intron | 30.0% |
| ! | CTAACTTTTACATCTCGAAT+GGG | - | chr5.1:12973690-12973709 | MS.gene010608:intron | 30.0% |
| AAAGGCTGATGATTATGTTG+TGG | - | chr5.1:12974106-12974125 | MS.gene010608:CDS | 35.0% | |
| AAGCTAAGAAAGTTCTTGGT+TGG | - | chr5.1:12974270-12974289 | MS.gene010608:CDS | 35.0% | |
| AGCTCTTCAAAACTAACCTT+AGG | + | chr5.1:12974299-12974318 | None:intergenic | 35.0% | |
| CGAGATTGTAAACTTCATCA+GGG | + | chr5.1:12973206-12973225 | None:intergenic | 35.0% | |
| GAAGTTGCATTTGGTTATGT+TGG | - | chr5.1:12974164-12974183 | MS.gene010608:CDS | 35.0% | |
| GATTATCAACTTCAGTAGGA+CGG | + | chr5.1:12974232-12974251 | None:intergenic | 35.0% | |
| GTGTGTTGAAGTTTGATGAA+CGG | + | chr5.1:12973068-12973087 | None:intergenic | 35.0% | |
| ! | TGGAGTTGATCCAAACATTT+CGG | + | chr5.1:12973379-12973398 | None:intergenic | 35.0% |
| !! | CTTCAGAGTAAGTTGTTTCT+TGG | - | chr5.1:12974008-12974027 | MS.gene010608:CDS | 35.0% |
| !! | GAGTTTTTGGAAGTTGCATT+TGG | - | chr5.1:12974155-12974174 | MS.gene010608:CDS | 35.0% |
| !! | GGTTGATAATGATGTTGAGA+TGG | - | chr5.1:12974331-12974350 | MS.gene010608:CDS | 35.0% |
| !! | TGAAGAGCTTGTTAGAATGA+TGG | - | chr5.1:12974310-12974329 | MS.gene010608:CDS | 35.0% |
| ACAACATCAGCAGTGTAATC+CGG | + | chr5.1:12973264-12973283 | None:intergenic | 40.0% | |
| AGGAAGATTACTAGAGCTGT+TGG | - | chr5.1:12973969-12973988 | MS.gene010608:CDS | 40.0% | |
| AGTTCTTGGTTGGAAACCTA+AGG | - | chr5.1:12974280-12974299 | MS.gene010608:CDS | 40.0% | |
| AGTTTGATGAACGGCGAATT+AGG | + | chr5.1:12973059-12973078 | None:intergenic | 40.0% | |
| CGTAAAGTCGCATTAATCAC+CGG | - | chr5.1:12972967-12972986 | MS.gene010608:CDS | 40.0% | |
| CTGTTGGAAGAATCAAGATC+GGG | - | chr5.1:12973985-12974004 | MS.gene010608:CDS | 40.0% | |
| GAGGAGAGAATTTCGTTACA+AGG | - | chr5.1:12973949-12973968 | MS.gene010608:CDS | 40.0% | |
| GCGAGATTGTAAACTTCATC+AGG | + | chr5.1:12973207-12973226 | None:intergenic | 40.0% | |
| GCTGTTGGAAGAATCAAGAT+CGG | - | chr5.1:12973984-12974003 | MS.gene010608:CDS | 40.0% | |
| GTGAATTACCGTGAAGCATA+TGG | - | chr5.1:12973879-12973898 | MS.gene010608:CDS | 40.0% | |
| GTGATTAATGCGACTTTACG+CGG | + | chr5.1:12972967-12972986 | None:intergenic | 40.0% | |
| GTGATTATGTTGAAGCGATG+TGG | - | chr5.1:12974066-12974085 | MS.gene010608:CDS | 40.0% | |
| GTTGATGCTACAACAGGAAA+AGG | - | chr5.1:12974088-12974107 | MS.gene010608:CDS | 40.0% | |
| TGATGTTGAGATGGCTAAGA+AGG | - | chr5.1:12974340-12974359 | MS.gene010608:CDS | 40.0% | |
| !! | AGAAAGTGCTTGTTGATGCT+GGG | - | chr5.1:12974363-12974382 | MS.gene010608:CDS | 40.0% |
| AAACGACTCCGTTTCATCCT+CGG | - | chr5.1:12973412-12973431 | MS.gene010608:CDS | 45.0% | |
| AACAAAGGCTACTCCGTTCA+TGG | - | chr5.1:12973033-12973052 | MS.gene010608:CDS | 45.0% | |
| AATCATGAGTCACCACGTAG+AGG | - | chr5.1:12973930-12973949 | MS.gene010608:CDS | 45.0% | |
| ACGAAATTCTCTCCTCTACG+TGG | + | chr5.1:12973945-12973964 | None:intergenic | 45.0% | |
| ACGGAATTCCTCCTCAACAA+AGG | - | chr5.1:12973018-12973037 | MS.gene010608:CDS | 45.0% | |
| ACTGCTGATGTTGTTGCTAC+TGG | - | chr5.1:12973270-12973289 | MS.gene010608:CDS | 45.0% | |
| ATCGGACAGCTTCAAGAAGA+CGG | + | chr5.1:12973302-12973321 | None:intergenic | 45.0% | |
| ATTAATGCGACTTTACGCGG+TGG | + | chr5.1:12972964-12972983 | None:intergenic | 45.0% | |
| CAACGGGAAGATCTCACATT+CGG | - | chr5.1:12973334-12973353 | MS.gene010608:CDS | 45.0% | |
| CACATTCGGTACTATCAAGC+TGG | - | chr5.1:12973348-12973367 | MS.gene010608:CDS | 45.0% | |
| CCAACACCGTCTACAACAAA+CGG | - | chr5.1:12972925-12972944 | MS.gene010608:CDS | 45.0% | |
| CCAAGACGGATCATACCTAA+CGG | - | chr5.1:12972999-12973018 | MS.gene010608:CDS | 45.0% | |
| CCGATCTCATATCGATGCAA+CGG | - | chr5.1:12973317-12973336 | MS.gene010608:CDS | 45.0% | |
| CGATCTCATATCGATGCAAC+GGG | - | chr5.1:12973318-12973337 | MS.gene010608:CDS | 45.0% | |
| GCATTAATCACCGGAATCAC+AGG | - | chr5.1:12972976-12972995 | MS.gene010608:CDS | 45.0% | |
| GCTGGATCTTCCGAAATGTT+TGG | - | chr5.1:12973366-12973385 | MS.gene010608:CDS | 45.0% | |
| TAAGGAGACCGAGGATGAAA+CGG | + | chr5.1:12973423-12973442 | None:intergenic | 45.0% | |
| TCAAGAGATTGGGGATTTGC+TGG | - | chr5.1:12974044-12974063 | MS.gene010608:CDS | 45.0% | |
| TGATTATGTTGTGGCGACAG+AGG | - | chr5.1:12974115-12974134 | MS.gene010608:CDS | 45.0% | |
| TGTTGAGGAGGAATTCCGTT+AGG | + | chr5.1:12973017-12973036 | None:intergenic | 45.0% | |
| ! | CCGTTGCATCGATATGAGAT+CGG | + | chr5.1:12973320-12973339 | None:intergenic | 45.0% |
| ! | GATGTGGTTGATGCTACAAC+AGG | - | chr5.1:12974082-12974101 | MS.gene010608:CDS | 45.0% |
| ! | GCATACGGTGGAAGAGTTTT+TGG | - | chr5.1:12974142-12974161 | MS.gene010608:CDS | 45.0% |
| !! | CGTTTGTTGTAGACGGTGTT+GGG | + | chr5.1:12972927-12972946 | None:intergenic | 45.0% |
| !! | GAGAAAGTGCTTGTTGATGC+TGG | - | chr5.1:12974362-12974381 | MS.gene010608:CDS | 45.0% |
| !! | GTTTGTTGTAGACGGTGTTG+GGG | + | chr5.1:12972926-12972945 | None:intergenic | 45.0% |
| AACGGAGTCGTTTCAGACTG+CGG | + | chr5.1:12973405-12973424 | None:intergenic | 50.0% | |
| ACCTAAGCGCGTCAAGAGAT+TGG | - | chr5.1:12974033-12974052 | MS.gene010608:CDS | 50.0% | |
| ACGGCGAATTAGGCCATGAA+CGG | + | chr5.1:12973049-12973068 | None:intergenic | 50.0% | |
| CCGTTAGGTATGATCCGTCT+TGG | + | chr5.1:12973002-12973021 | None:intergenic | 50.0% | |
| CCTAAGCGCGTCAAGAGATT+GGG | - | chr5.1:12974034-12974053 | MS.gene010608:CDS | 50.0% | |
| CTAAGCGCGTCAAGAGATTG+GGG | - | chr5.1:12974035-12974054 | MS.gene010608:CDS | 50.0% | |
| GAACGGAGTAGCCTTTGTTG+AGG | + | chr5.1:12973032-12973051 | None:intergenic | 50.0% | |
| GTACCAATGCGCAGCAACTT+TGG | + | chr5.1:12973454-12973473 | None:intergenic | 50.0% | |
| ! | CGCGGTTTCGTTTGAGATTC+CGG | - | chr5.1:12973242-12973261 | MS.gene010608:CDS | 50.0% |
| ! | TGAGCTTTGTGAGCGTTGTG+TGG | + | chr5.1:12973117-12973136 | None:intergenic | 50.0% |
| !! | CCGTTTGTTGTAGACGGTGT+TGG | + | chr5.1:12972928-12972947 | None:intergenic | 50.0% |
| !! | GTGTCGCCGTTTGTTGTAGA+CGG | + | chr5.1:12972934-12972953 | None:intergenic | 50.0% |
| AATGCGACTTTACGCGGTGG+AGG | + | chr5.1:12972961-12972980 | None:intergenic | 55.0% | |
| ACCGGAATCACAGGCCAAGA+CGG | - | chr5.1:12972985-12973004 | MS.gene010608:CDS | 55.0% | |
| CCAATGCGCAGCAACTTTGG+AGG | + | chr5.1:12973451-12973470 | None:intergenic | 55.0% | |
| CCCAATCTCTTGACGCGCTT+AGG | + | chr5.1:12974037-12974056 | None:intergenic | 55.0% | |
| CCTCCAAAGTTGCTGCGCAT+TGG | - | chr5.1:12973448-12973467 | MS.gene010608:intron | 55.0% | |
| CGGAGTAGCCTTTGTTGAGG+AGG | + | chr5.1:12973029-12973048 | None:intergenic | 55.0% | |
| GACAGAGGATTCGCATACGG+TGG | - | chr5.1:12974130-12974149 | MS.gene010608:CDS | 55.0% | |
| GGCGACAGAGGATTCGCATA+CGG | - | chr5.1:12974127-12974146 | MS.gene010608:CDS | 55.0% | |
| TCCGTCTTGGCCTGTGATTC+CGG | + | chr5.1:12972989-12973008 | None:intergenic | 55.0% | |
| ! | ATGCGCAGCAACTTTGGAGG+CGG | + | chr5.1:12973448-12973467 | None:intergenic | 55.0% |
| ! | GAATAGTGTCGAGCCAGCGA+CGG | + | chr5.1:12973182-12973201 | None:intergenic | 55.0% |
| !! | AGAGGAAGCGTCGGAGAGAT+CGG | + | chr5.1:12973157-12973176 | None:intergenic | 55.0% |
| CGCTGCACAGTCACATGTCG+CGG | - | chr5.1:12973224-12973243 | MS.gene010608:CDS | 60.0% | |
| GACTTTACGCGGTGGAGGAG+TGG | + | chr5.1:12972956-12972975 | None:intergenic | 60.0% | |
| GGAGTCGTTTCAGACTGCGG+CGG | + | chr5.1:12973402-12973421 | None:intergenic | 60.0% | |
| ! | GCAACTTTGGAGGCGGCGTA+AGG | + | chr5.1:12973441-12973460 | None:intergenic | 60.0% |
| ACGCTTCCTCTCTCCGTCGC+TGG | - | chr5.1:12973166-12973185 | MS.gene010608:CDS | 65.0% | |
| GTCGTTTCAGACTGCGGCGG+TGG | + | chr5.1:12973399-12973418 | None:intergenic | 65.0% | |
| ! | GCGACGGAGAGAGGAAGCGT+CGG | + | chr5.1:12973166-12973185 | None:intergenic | 65.0% |
| GAGGCGGCGTAAGGAGACCG+AGG | + | chr5.1:12973432-12973451 | None:intergenic | 70.0% | |
| GTCGAGCCAGCGACGGAGAG+AGG | + | chr5.1:12973175-12973194 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 12972901 | 12974412 | 12972901 | ID=MS.gene010608 |
| chr5.1 | mRNA | 12972901 | 12974412 | 12972901 | ID=MS.gene010608.t1;Parent=MS.gene010608 |
| chr5.1 | exon | 12973844 | 12974412 | 12973844 | ID=MS.gene010608.t1.exon1;Parent=MS.gene010608.t1 |
| chr5.1 | CDS | 12973844 | 12974412 | 12973844 | ID=cds.MS.gene010608.t1;Parent=MS.gene010608.t1 |
| chr5.1 | exon | 12972901 | 12973441 | 12972901 | ID=MS.gene010608.t1.exon2;Parent=MS.gene010608.t1 |
| chr5.1 | CDS | 12972901 | 12973441 | 12972901 | ID=cds.MS.gene010608.t1;Parent=MS.gene010608.t1 |
| Gene Sequence |
| Protein sequence |
