Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010609.t1 | XP_003612144.1 | 97.5 | 366 | 9 | 0 | 1 | 366 | 1 | 366 | 6.90E-205 | 723 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010609.t1 | Q9SNY3 | 85.5 | 344 | 49 | 1 | 23 | 366 | 16 | 358 | 1.2e-173 | 610.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010609.t1 | A0A072UDQ2 | 97.5 | 366 | 9 | 0 | 1 | 366 | 1 | 366 | 5.0e-205 | 723.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010609 | MS.gene96326 | PPI |
| MS.gene010609 | MS.gene07262 | PPI |
| MS.gene010609 | MS.gene20834 | PPI |
| MS.gene010609 | MS.gene073336 | PPI |
| MS.gene20783 | MS.gene010609 | PPI |
| MS.gene010609 | MS.gene012318 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010609.t1 | MTR_5g021770 | 97.541 | 366 | 9 | 0 | 1 | 366 | 1 | 366 | 0.0 | 743 |
| MS.gene010609.t1 | MTR_5g021760 | 96.721 | 366 | 12 | 0 | 1 | 366 | 1 | 366 | 0.0 | 736 |
| MS.gene010609.t1 | MTR_4g120030 | 24.927 | 341 | 192 | 13 | 23 | 344 | 110 | 405 | 3.86e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010609.t1 | AT5G66280 | 83.708 | 356 | 54 | 3 | 13 | 366 | 5 | 358 | 0.0 | 625 |
| MS.gene010609.t1 | AT3G51160 | 80.992 | 363 | 67 | 2 | 4 | 366 | 10 | 370 | 0.0 | 624 |
| MS.gene010609.t1 | AT2G47650 | 24.713 | 348 | 195 | 14 | 23 | 346 | 118 | 422 | 1.42e-11 | 65.9 |
| MS.gene010609.t1 | AT2G47650 | 25.989 | 354 | 189 | 17 | 23 | 346 | 118 | 428 | 6.91e-11 | 63.9 |
Find 95 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGCGGTGTTGGGGTTT+TGG | 0.163598 | 5.1:+12993813 | None:intergenic |
| ACTGAAGTTGATAATCTTAA+AGG | 0.192272 | 5.1:-12992657 | MS.gene010609:CDS |
| CTTCAGAGTAAGTTGTTTCT+TGG | 0.283233 | 5.1:-12992885 | MS.gene010609:CDS |
| TTTCCAACCAAGAACTTTCT+TGG | 0.301061 | 5.1:+12992620 | None:intergenic |
| AGTAAAGCCAAGAAAGTTCT+TGG | 0.319296 | 5.1:-12992627 | MS.gene010609:CDS |
| TCCGTCTTGGCCGGTGATTC+CGG | 0.325812 | 5.1:+12993744 | None:intergenic |
| CGTTTGTTGTTGGCGGTGTT+GGG | 0.331753 | 5.1:+12993806 | None:intergenic |
| CCGTTTGTTGTTGGCGGTGT+TGG | 0.337657 | 5.1:+12993805 | None:intergenic |
| AGTTTGACGAACGGCGAATT+AGG | 0.352603 | 5.1:+12993674 | None:intergenic |
| GCTGGATCTTCTGAAATGTT+TGG | 0.354742 | 5.1:-12993364 | MS.gene010609:CDS |
| ACCTAAGTGCGTCGAGAGAT+TGG | 0.376609 | 5.1:-12992860 | MS.gene010609:CDS |
| TGTTGAGGAGGAATTCTGTT+AGG | 0.384121 | 5.1:+12993716 | None:intergenic |
| CCTAAGTGCGTCGAGAGATT+GGG | 0.389278 | 5.1:-12992859 | MS.gene010609:CDS |
| TTGGTTATGTTGGATTGAAT+TGG | 0.394470 | 5.1:-12992719 | MS.gene010609:CDS |
| ACAACATCGGCAGTGTAATC+AGG | 0.400097 | 5.1:+12993469 | None:intergenic |
| GCGAGGTTGTAAACTTCGTC+AGG | 0.409532 | 5.1:+12993526 | None:intergenic |
| GTACCAATGCGCAGCGACTT+TGG | 0.414772 | 5.1:+12993279 | None:intergenic |
| AGGAAGATTACTAGAGTTGT+TGG | 0.423133 | 5.1:-12992924 | MS.gene010609:CDS |
| GTGAATTACCGTGAAGCATA+TGG | 0.425833 | 5.1:-12993014 | MS.gene010609:CDS |
| CCAACACCGCCAACAACAAA+CGG | 0.429296 | 5.1:-12993805 | MS.gene010609:CDS |
| TGATATTGAGATGGCTAAGA+AGG | 0.440336 | 5.1:-12992553 | MS.gene010609:CDS |
| TCGAGAGATTGGGGATTTGC+CGG | 0.445475 | 5.1:-12992849 | MS.gene010609:CDS |
| GATGATTATGTTGTGGCGAC+GGG | 0.448933 | 5.1:-12992780 | MS.gene010609:CDS |
| ACGCTTCCTCTCTCCGTCGC+TGG | 0.449912 | 5.1:-12993564 | MS.gene010609:CDS |
| GAGAAAGTCCTTGTTGATGC+TGG | 0.452535 | 5.1:-12992531 | MS.gene010609:CDS |
| CTGTTAGGTATGATCCGTCT+TGG | 0.465366 | 5.1:+12993731 | None:intergenic |
| TGATGATTATGTTGTGGCGA+CGG | 0.465699 | 5.1:-12992781 | MS.gene010609:CDS |
| CGATCTCATATCGATGCAAC+AGG | 0.466501 | 5.1:-12993412 | MS.gene010609:CDS |
| AAACGACTTCGTTTCATCCT+CGG | 0.473906 | 5.1:-12993318 | MS.gene010609:CDS |
| AGAGGAAGCGTCAGAGAGAT+CGG | 0.476997 | 5.1:+12993576 | None:intergenic |
| CCTCCAAAGTCGCTGCGCAT+TGG | 0.478635 | 5.1:-12993282 | MS.gene010609:intron |
| GTGGTGTCGCCGTTTGTTGT+TGG | 0.483145 | 5.1:+12993796 | None:intergenic |
| AGTTCTTGGTTGGAAACCTA+AGG | 0.486640 | 5.1:-12992613 | MS.gene010609:CDS |
| GAGGAGAGAATTTCGTTACA+AGG | 0.489476 | 5.1:-12992944 | MS.gene010609:CDS |
| GATGTGGTTGATGCTACAAC+AGG | 0.492498 | 5.1:-12992811 | MS.gene010609:CDS |
| CCCAATCTCTCGACGCACTT+AGG | 0.494377 | 5.1:+12992859 | None:intergenic |
| TGAAGAGCTTGTTAGAATGA+TGG | 0.497175 | 5.1:-12992583 | MS.gene010609:CDS |
| AAGCCAAGAAAGTTCTTGGT+TGG | 0.498900 | 5.1:-12992623 | MS.gene010609:CDS |
| AGCTCTTCAAAACTAACCTT+AGG | 0.505928 | 5.1:+12992597 | None:intergenic |
| CACATACGGTACTATCAAGC+TGG | 0.507207 | 5.1:-12993382 | MS.gene010609:CDS |
| GCATTAATCACCGGAATCAC+CGG | 0.526480 | 5.1:-12993754 | MS.gene010609:CDS |
| TTGTTGGAAGAATCAAGATC+GGG | 0.530932 | 5.1:-12992908 | MS.gene010609:CDS |
| GCGACTTTGGAGGCGGCGTA+AGG | 0.533507 | 5.1:+12993292 | None:intergenic |
| ATGCGCAGCGACTTTGGAGG+CGG | 0.536171 | 5.1:+12993285 | None:intergenic |
| TTAAGATTATCAACTTCAGT+AGG | 0.538937 | 5.1:+12992660 | None:intergenic |
| GTCGAGCCAGCGACGGAGAG+AGG | 0.549312 | 5.1:+12993558 | None:intergenic |
| TAGGTATGATCCGTCTTGGC+CGG | 0.550384 | 5.1:+12993735 | None:intergenic |
| GTGTCGCCGTTTGTTGTTGG+CGG | 0.555514 | 5.1:+12993799 | None:intergenic |
| AGAAAGTCCTTGTTGATGCT+GGG | 0.563986 | 5.1:-12992530 | MS.gene010609:CDS |
| CGGAGTAGCCTTTGTTGAGG+AGG | 0.568302 | 5.1:+12993704 | None:intergenic |
| CCAATGCGCAGCGACTTTGG+AGG | 0.569706 | 5.1:+12993282 | None:intergenic |
| GTTGTTGGAAGAATCAAGAT+CGG | 0.578552 | 5.1:-12992909 | MS.gene010609:CDS |
| ACCGGAATCACCGGCCAAGA+CGG | 0.579451 | 5.1:-12993745 | MS.gene010609:CDS |
| CTAAGTGCGTCGAGAGATTG+GGG | 0.581879 | 5.1:-12992858 | MS.gene010609:CDS |
| ACTGCCGATGTTGTTGCTAC+CGG | 0.584186 | 5.1:-12993460 | MS.gene010609:CDS |
| TTCAAGAAGACGGAGCGCAC+CGG | 0.584604 | 5.1:+12993441 | None:intergenic |
| GACTTTCCGCAGTGGAGGAG+TGG | 0.587386 | 5.1:+12993777 | None:intergenic |
| ATCGGACGGCTTCAAGAAGA+CGG | 0.590667 | 5.1:+12993431 | None:intergenic |
| ACGAACGGCGAATTAGGCCG+TGG | 0.595994 | 5.1:+12993680 | None:intergenic |
| GGTTGATGCTACAACAGGAA+AGG | 0.599717 | 5.1:-12992806 | MS.gene010609:CDS |
| CATCGCTTCAACATAATCAC+CGG | 0.605949 | 5.1:+12992830 | None:intergenic |
| GGACGGAGTAGCCTTTGTTG+AGG | 0.608416 | 5.1:+12993701 | None:intergenic |
| GTTGATGCTACAACAGGAAA+GGG | 0.610852 | 5.1:-12992805 | MS.gene010609:CDS |
| GTTTGTTGTTGGCGGTGTTG+GGG | 0.611035 | 5.1:+12993807 | None:intergenic |
| CGGAAAGTCGCATTAATCAC+CGG | 0.613778 | 5.1:-12993763 | MS.gene010609:CDS |
| ATGATTATGTTGTGGCGACG+GGG | 0.615518 | 5.1:-12992779 | MS.gene010609:CDS |
| ACGGCGAATTAGGCCGTGGA+CGG | 0.616647 | 5.1:+12993684 | None:intergenic |
| GTGATTATGTTGAAGCGATG+TGG | 0.617088 | 5.1:-12992827 | MS.gene010609:CDS |
| AATGCGACTTTCCGCAGTGG+AGG | 0.619549 | 5.1:+12993772 | None:intergenic |
| ACAGAATTCCTCCTCAACAA+AGG | 0.619656 | 5.1:-12993712 | MS.gene010609:CDS |
| GTGTGTTGAAGTTTGACGAA+CGG | 0.622272 | 5.1:+12993665 | None:intergenic |
| CAACAGGAAGATCTCACATA+CGG | 0.624247 | 5.1:-12993396 | MS.gene010609:CDS |
| AACAAAGGCTACTCCGTCCA+CGG | 0.626974 | 5.1:-12993697 | MS.gene010609:CDS |
| GGATAGTGTCGAGCCAGCGA+CGG | 0.629653 | 5.1:+12993551 | None:intergenic |
| CAATGTACCCAGCATCAACA+AGG | 0.631014 | 5.1:+12992523 | None:intergenic |
| TGCATCGATATGAGATCGGA+CGG | 0.632798 | 5.1:+12993417 | None:intergenic |
| GGTTGATAATGATATTGAGA+TGG | 0.632801 | 5.1:-12992562 | MS.gene010609:CDS |
| CTGTTGCATCGATATGAGAT+CGG | 0.632916 | 5.1:+12993413 | None:intergenic |
| TTATGTTGGATTGAATTGGA+AGG | 0.637434 | 5.1:-12992715 | MS.gene010609:CDS |
| AACGAAGTCGTTTCAGACTG+CGG | 0.644350 | 5.1:+12993328 | None:intergenic |
| TGAGCTTTGTGAGTGTCGTG+TGG | 0.658563 | 5.1:+12993616 | None:intergenic |
| AACCGCGACGTGAGACTGTG+CGG | 0.665940 | 5.1:+12993504 | None:intergenic |
| CGCCGCACAGTCTCACGTCG+CGG | 0.668155 | 5.1:-12993506 | MS.gene010609:CDS |
| CGAGGTTGTAAACTTCGTCA+GGG | 0.672942 | 5.1:+12993527 | None:intergenic |
| AATCATGAATCACCACGTAG+AGG | 0.676462 | 5.1:-12992963 | MS.gene010609:CDS |
| TGATTATGTTGTGGCGACGG+GGG | 0.678949 | 5.1:-12992778 | MS.gene010609:CDS |
| ACGAAATTCTCTCCTCTACG+TGG | 0.681620 | 5.1:+12992951 | None:intergenic |
| ATTAATGCGACTTTCCGCAG+TGG | 0.684074 | 5.1:+12993769 | None:intergenic |
| CGACGTGAGACTGTGCGGCG+AGG | 0.686982 | 5.1:+12993509 | None:intergenic |
| GGTTGTAAACTTCGTCAGGG+AGG | 0.692198 | 5.1:+12993530 | None:intergenic |
| GAGGCGGCGTAAGGAGACCG+AGG | 0.699155 | 5.1:+12993301 | None:intergenic |
| CGCACCGGTAGCAACAACAT+CGG | 0.701461 | 5.1:+12993456 | None:intergenic |
| AAGGGCTGATGATTATGTTG+TGG | 0.716548 | 5.1:-12992787 | MS.gene010609:CDS |
| GAAGTCGTTTCAGACTGCGG+CGG | 0.732622 | 5.1:+12993331 | None:intergenic |
| GCGACACCACTCCTCCACTG+CGG | 0.736296 | 5.1:-12993783 | MS.gene010609:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGCATAAATTAATGAAA+TGG | - | chr5.1:12993119-12993138 | MS.gene010609:intron | 15.0% |
| !!! | CTAACTTTTACATCTATAAT+AGG | - | chr5.1:12993164-12993183 | MS.gene010609:intron | 20.0% |
| ! | TAATGAAATGGAAATAGCAA+CGG | - | chr5.1:12993131-12993150 | MS.gene010609:intron | 25.0% |
| ! | TTAAGATTATCAACTTCAGT+AGG | + | chr5.1:12993684-12993703 | None:intergenic | 25.0% |
| !! | TATGGAATTTTTGCTTGTAA+CGG | - | chr5.1:12993345-12993364 | MS.gene010609:CDS | 25.0% |
| !!! | ACTGAAGTTGATAATCTTAA+AGG | - | chr5.1:12993684-12993703 | MS.gene010609:CDS | 25.0% |
| CAAAAATTCCATATGCTTCA+CGG | + | chr5.1:12993338-12993357 | None:intergenic | 30.0% | |
| TTATGTTGGATTGAATTGGA+AGG | - | chr5.1:12993626-12993645 | MS.gene010609:CDS | 30.0% | |
| TTGGTTATGTTGGATTGAAT+TGG | - | chr5.1:12993622-12993641 | MS.gene010609:CDS | 30.0% | |
| ! | CTAACTTTTACATCTCGAAT+AGG | - | chr5.1:12993257-12993276 | MS.gene010609:intron | 30.0% |
| !! | GGTTGATAATGATATTGAGA+TGG | - | chr5.1:12993779-12993798 | MS.gene010609:CDS | 30.0% |
| AGCTCTTCAAAACTAACCTT+AGG | + | chr5.1:12993747-12993766 | None:intergenic | 35.0% | |
| AGGAAGATTACTAGAGTTGT+TGG | - | chr5.1:12993417-12993436 | MS.gene010609:CDS | 35.0% | |
| AGTAAAGCCAAGAAAGTTCT+TGG | - | chr5.1:12993714-12993733 | MS.gene010609:CDS | 35.0% | |
| GTTGTTGGAAGAATCAAGAT+CGG | - | chr5.1:12993432-12993451 | MS.gene010609:CDS | 35.0% | |
| TGATATTGAGATGGCTAAGA+AGG | - | chr5.1:12993788-12993807 | MS.gene010609:CDS | 35.0% | |
| TTGTTGGAAGAATCAAGATC+GGG | - | chr5.1:12993433-12993452 | MS.gene010609:CDS | 35.0% | |
| TTTCCAACCAAGAACTTTCT+TGG | + | chr5.1:12993724-12993743 | None:intergenic | 35.0% | |
| !! | CTTCAGAGTAAGTTGTTTCT+TGG | - | chr5.1:12993456-12993475 | MS.gene010609:CDS | 35.0% |
| !! | GAGTTTTTGGAAGTTGCTTT+TGG | - | chr5.1:12993603-12993622 | MS.gene010609:CDS | 35.0% |
| !! | TGAAGAGCTTGTTAGAATGA+TGG | - | chr5.1:12993758-12993777 | MS.gene010609:CDS | 35.0% |
| !!! | GAAGTTGCTTTTGGTTATGT+TGG | - | chr5.1:12993612-12993631 | MS.gene010609:CDS | 35.0% |
| AAACGACTTCGTTTCATCCT+CGG | - | chr5.1:12993023-12993042 | MS.gene010609:CDS | 40.0% | |
| AAGCCAAGAAAGTTCTTGGT+TGG | - | chr5.1:12993718-12993737 | MS.gene010609:CDS | 40.0% | |
| AAGGGCTGATGATTATGTTG+TGG | - | chr5.1:12993554-12993573 | MS.gene010609:CDS | 40.0% | |
| AATCATGAATCACCACGTAG+AGG | - | chr5.1:12993378-12993397 | MS.gene010609:CDS | 40.0% | |
| ACAGAATTCCTCCTCAACAA+AGG | - | chr5.1:12992629-12992648 | MS.gene010609:CDS | 40.0% | |
| AGAAAGTCCTTGTTGATGCT+GGG | - | chr5.1:12993811-12993830 | MS.gene010609:CDS | 40.0% | |
| AGTTCTTGGTTGGAAACCTA+AGG | - | chr5.1:12993728-12993747 | MS.gene010609:CDS | 40.0% | |
| CAACAGGAAGATCTCACATA+CGG | - | chr5.1:12992945-12992964 | MS.gene010609:CDS | 40.0% | |
| CATCGCTTCAACATAATCAC+CGG | + | chr5.1:12993514-12993533 | None:intergenic | 40.0% | |
| GAGGAGAGAATTTCGTTACA+AGG | - | chr5.1:12993397-12993416 | MS.gene010609:CDS | 40.0% | |
| GTGAATTACCGTGAAGCATA+TGG | - | chr5.1:12993327-12993346 | MS.gene010609:CDS | 40.0% | |
| GTGATTATGTTGAAGCGATG+TGG | - | chr5.1:12993514-12993533 | MS.gene010609:CDS | 40.0% | |
| GTGTGTTGAAGTTTGACGAA+CGG | + | chr5.1:12992679-12992698 | None:intergenic | 40.0% | |
| GTTGATGCTACAACAGGAAA+GGG | - | chr5.1:12993536-12993555 | MS.gene010609:CDS | 40.0% | |
| TGATGATTATGTTGTGGCGA+CGG | - | chr5.1:12993560-12993579 | MS.gene010609:CDS | 40.0% | |
| TGTTGAGGAGGAATTCTGTT+AGG | + | chr5.1:12992628-12992647 | None:intergenic | 40.0% | |
| ! | CTGTTGCATCGATATGAGAT+CGG | + | chr5.1:12992931-12992950 | None:intergenic | 40.0% |
| !! | GCTGGATCTTCTGAAATGTT+TGG | - | chr5.1:12992977-12992996 | MS.gene010609:CDS | 40.0% |
| AACGAAGTCGTTTCAGACTG+CGG | + | chr5.1:12993016-12993035 | None:intergenic | 45.0% | |
| ACAACATCGGCAGTGTAATC+AGG | + | chr5.1:12992875-12992894 | None:intergenic | 45.0% | |
| ACGAAATTCTCTCCTCTACG+TGG | + | chr5.1:12993393-12993412 | None:intergenic | 45.0% | |
| AGTTTGACGAACGGCGAATT+AGG | + | chr5.1:12992670-12992689 | None:intergenic | 45.0% | |
| ATGATTATGTTGTGGCGACG+GGG | - | chr5.1:12993562-12993581 | MS.gene010609:CDS | 45.0% | |
| ATTAATGCGACTTTCCGCAG+TGG | + | chr5.1:12992575-12992594 | None:intergenic | 45.0% | |
| CAATGTACCCAGCATCAACA+AGG | + | chr5.1:12993821-12993840 | None:intergenic | 45.0% | |
| CACATACGGTACTATCAAGC+TGG | - | chr5.1:12992959-12992978 | MS.gene010609:CDS | 45.0% | |
| CGAGGTTGTAAACTTCGTCA+GGG | + | chr5.1:12992817-12992836 | None:intergenic | 45.0% | |
| CGATCTCATATCGATGCAAC+AGG | - | chr5.1:12992929-12992948 | MS.gene010609:CDS | 45.0% | |
| CGGAAAGTCGCATTAATCAC+CGG | - | chr5.1:12992578-12992597 | MS.gene010609:CDS | 45.0% | |
| CTGTTAGGTATGATCCGTCT+TGG | + | chr5.1:12992613-12992632 | None:intergenic | 45.0% | |
| GAGAAAGTCCTTGTTGATGC+TGG | - | chr5.1:12993810-12993829 | MS.gene010609:CDS | 45.0% | |
| GATGATTATGTTGTGGCGAC+GGG | - | chr5.1:12993561-12993580 | MS.gene010609:CDS | 45.0% | |
| GCATTAATCACCGGAATCAC+CGG | - | chr5.1:12992587-12992606 | MS.gene010609:CDS | 45.0% | |
| ! | GATGTGGTTGATGCTACAAC+AGG | - | chr5.1:12993530-12993549 | MS.gene010609:CDS | 45.0% |
| ! | GCATACGGTGGAAGAGTTTT+TGG | - | chr5.1:12993590-12993609 | MS.gene010609:CDS | 45.0% |
| ! | GGTTGATGCTACAACAGGAA+AGG | - | chr5.1:12993535-12993554 | MS.gene010609:CDS | 45.0% |
| ! | TGCATCGATATGAGATCGGA+CGG | + | chr5.1:12992927-12992946 | None:intergenic | 45.0% |
| AACAAAGGCTACTCCGTCCA+CGG | - | chr5.1:12992644-12992663 | MS.gene010609:CDS | 50.0% | |
| ACCTAAGTGCGTCGAGAGAT+TGG | - | chr5.1:12993481-12993500 | MS.gene010609:CDS | 50.0% | |
| ACTGCCGATGTTGTTGCTAC+CGG | - | chr5.1:12992881-12992900 | MS.gene010609:CDS | 50.0% | |
| ATCGGACGGCTTCAAGAAGA+CGG | + | chr5.1:12992913-12992932 | None:intergenic | 50.0% | |
| CCAACACCGCCAACAACAAA+CGG | - | chr5.1:12992536-12992555 | MS.gene010609:CDS | 50.0% | |
| CCTAAGTGCGTCGAGAGATT+GGG | - | chr5.1:12993482-12993501 | MS.gene010609:CDS | 50.0% | |
| CTAAGTGCGTCGAGAGATTG+GGG | - | chr5.1:12993483-12993502 | MS.gene010609:CDS | 50.0% | |
| GCGAGGTTGTAAACTTCGTC+AGG | + | chr5.1:12992818-12992837 | None:intergenic | 50.0% | |
| GGTTGTAAACTTCGTCAGGG+AGG | + | chr5.1:12992814-12992833 | None:intergenic | 50.0% | |
| TAGGTATGATCCGTCTTGGC+CGG | + | chr5.1:12992609-12992628 | None:intergenic | 50.0% | |
| TCGAGAGATTGGGGATTTGC+CGG | - | chr5.1:12993492-12993511 | MS.gene010609:CDS | 50.0% | |
| TGATTATGTTGTGGCGACGG+GGG | - | chr5.1:12993563-12993582 | MS.gene010609:CDS | 50.0% | |
| ! | TGAGCTTTGTGAGTGTCGTG+TGG | + | chr5.1:12992728-12992747 | None:intergenic | 50.0% |
| !! | AGAGGAAGCGTCAGAGAGAT+CGG | + | chr5.1:12992768-12992787 | None:intergenic | 50.0% |
| !! | CGTTTGTTGTTGGCGGTGTT+GGG | + | chr5.1:12992538-12992557 | None:intergenic | 50.0% |
| !! | GTTTGTTGTTGGCGGTGTTG+GGG | + | chr5.1:12992537-12992556 | None:intergenic | 50.0% |
| AATGCGACTTTCCGCAGTGG+AGG | + | chr5.1:12992572-12992591 | None:intergenic | 55.0% | |
| CCCAATCTCTCGACGCACTT+AGG | + | chr5.1:12993485-12993504 | None:intergenic | 55.0% | |
| CGGAGTAGCCTTTGTTGAGG+AGG | + | chr5.1:12992640-12992659 | None:intergenic | 55.0% | |
| GAAGTCGTTTCAGACTGCGG+CGG | + | chr5.1:12993013-12993032 | None:intergenic | 55.0% | |
| GGACGGAGTAGCCTTTGTTG+AGG | + | chr5.1:12992643-12992662 | None:intergenic | 55.0% | |
| GTACCAATGCGCAGCGACTT+TGG | + | chr5.1:12993065-12993084 | None:intergenic | 55.0% | |
| TTCAAGAAGACGGAGCGCAC+CGG | + | chr5.1:12992903-12992922 | None:intergenic | 55.0% | |
| ! | CGCACCGGTAGCAACAACAT+CGG | + | chr5.1:12992888-12992907 | None:intergenic | 55.0% |
| !! | CCGTTTGTTGTTGGCGGTGT+TGG | + | chr5.1:12992539-12992558 | None:intergenic | 55.0% |
| !! | GTGGTGTCGCCGTTTGTTGT+TGG | + | chr5.1:12992548-12992567 | None:intergenic | 55.0% |
| !! | GTGTCGCCGTTTGTTGTTGG+CGG | + | chr5.1:12992545-12992564 | None:intergenic | 55.0% |
| !! | GTTGGCGGTGTTGGGGTTTT+GGG | + | chr5.1:12992530-12992549 | None:intergenic | 55.0% |
| !! | TGTTGGCGGTGTTGGGGTTT+TGG | + | chr5.1:12992531-12992550 | None:intergenic | 55.0% |
| AACCGCGACGTGAGACTGTG+CGG | + | chr5.1:12992840-12992859 | None:intergenic | 60.0% | |
| ACCGGAATCACCGGCCAAGA+CGG | - | chr5.1:12992596-12992615 | MS.gene010609:CDS | 60.0% | |
| ACGAACGGCGAATTAGGCCG+TGG | + | chr5.1:12992664-12992683 | None:intergenic | 60.0% | |
| ACGGCGAATTAGGCCGTGGA+CGG | + | chr5.1:12992660-12992679 | None:intergenic | 60.0% | |
| CCAATGCGCAGCGACTTTGG+AGG | + | chr5.1:12993062-12993081 | None:intergenic | 60.0% | |
| CCTCCAAAGTCGCTGCGCAT+TGG | - | chr5.1:12993059-12993078 | MS.gene010609:intron | 60.0% | |
| GACTTTCCGCAGTGGAGGAG+TGG | + | chr5.1:12992567-12992586 | None:intergenic | 60.0% | |
| TCCGTCTTGGCCGGTGATTC+CGG | + | chr5.1:12992600-12992619 | None:intergenic | 60.0% | |
| ! | ATGCGCAGCGACTTTGGAGG+CGG | + | chr5.1:12993059-12993078 | None:intergenic | 60.0% |
| ! | GGATAGTGTCGAGCCAGCGA+CGG | + | chr5.1:12992793-12992812 | None:intergenic | 60.0% |
| ACGCTTCCTCTCTCCGTCGC+TGG | - | chr5.1:12992777-12992796 | MS.gene010609:CDS | 65.0% | |
| GACGGGGGATTCGCATACGG+TGG | - | chr5.1:12993578-12993597 | MS.gene010609:CDS | 65.0% | |
| GCGACACCACTCCTCCACTG+CGG | - | chr5.1:12992558-12992577 | MS.gene010609:CDS | 65.0% | |
| GGCGACGGGGGATTCGCATA+CGG | - | chr5.1:12993575-12993594 | MS.gene010609:CDS | 65.0% | |
| ! | GCGACTTTGGAGGCGGCGTA+AGG | + | chr5.1:12993052-12993071 | None:intergenic | 65.0% |
| CGACGTGAGACTGTGCGGCG+AGG | + | chr5.1:12992835-12992854 | None:intergenic | 70.0% | |
| CGCCGCACAGTCTCACGTCG+CGG | - | chr5.1:12992835-12992854 | MS.gene010609:CDS | 70.0% | |
| GAGGCGGCGTAAGGAGACCG+AGG | + | chr5.1:12993043-12993062 | None:intergenic | 70.0% | |
| GTCGAGCCAGCGACGGAGAG+AGG | + | chr5.1:12992786-12992805 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 12992512 | 12993851 | 12992512 | ID=MS.gene010609 |
| chr5.1 | mRNA | 12992512 | 12993851 | 12992512 | ID=MS.gene010609.t1;Parent=MS.gene010609 |
| chr5.1 | exon | 12993283 | 12993851 | 12993283 | ID=MS.gene010609.t1.exon1;Parent=MS.gene010609.t1 |
| chr5.1 | CDS | 12993283 | 12993851 | 12993283 | ID=cds.MS.gene010609.t1;Parent=MS.gene010609.t1 |
| chr5.1 | exon | 12992512 | 12993043 | 12992512 | ID=MS.gene010609.t1.exon2;Parent=MS.gene010609.t1 |
| chr5.1 | CDS | 12992512 | 12993043 | 12992512 | ID=cds.MS.gene010609.t1;Parent=MS.gene010609.t1 |
| Gene Sequence |
| Protein sequence |
