Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011476.t1 | XP_003608797.1 | 98.7 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 2.80E-175 | 624.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011476.t1 | Q8L7W5 | 76.1 | 293 | 68 | 1 | 1 | 291 | 1 | 293 | 8.3e-136 | 484.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011476.t1 | G7JK82 | 98.7 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 2.0e-175 | 624.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68324 | MS.gene011476 | PPI |
| MS.gene011476 | MS.gene027563 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011476.t1 | MTR_4g102060 | 98.680 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 0.0 | 624 |
| MS.gene011476.t1 | MTR_7g074900 | 63.380 | 284 | 104 | 0 | 1 | 284 | 1 | 284 | 4.55e-143 | 405 |
| MS.gene011476.t1 | MTR_6g039970 | 41.667 | 276 | 150 | 4 | 22 | 296 | 6 | 271 | 1.04e-68 | 215 |
| MS.gene011476.t1 | MTR_8g063210 | 41.887 | 265 | 150 | 3 | 22 | 285 | 6 | 267 | 5.36e-67 | 211 |
| MS.gene011476.t1 | MTR_5g035190 | 43.651 | 252 | 138 | 3 | 33 | 283 | 17 | 265 | 1.62e-66 | 209 |
| MS.gene011476.t1 | MTR_5g035190 | 45.729 | 199 | 108 | 0 | 85 | 283 | 13 | 211 | 4.93e-63 | 198 |
| MS.gene011476.t1 | MTR_5g040320 | 31.788 | 151 | 94 | 4 | 129 | 274 | 101 | 247 | 1.44e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011476.t1 | AT4G12110 | 76.109 | 293 | 68 | 1 | 1 | 291 | 1 | 293 | 1.04e-175 | 488 |
| MS.gene011476.t1 | AT4G22756 | 74.247 | 299 | 73 | 2 | 1 | 295 | 1 | 299 | 1.11e-171 | 477 |
| MS.gene011476.t1 | AT4G22755 | 69.072 | 291 | 87 | 2 | 1 | 290 | 1 | 289 | 2.57e-156 | 438 |
| MS.gene011476.t1 | AT1G07420 | 42.642 | 265 | 144 | 4 | 19 | 282 | 3 | 260 | 6.32e-69 | 215 |
| MS.gene011476.t1 | AT2G29390 | 43.033 | 244 | 135 | 3 | 33 | 275 | 10 | 250 | 7.31e-66 | 207 |
| MS.gene011476.t1 | AT2G29390 | 41.473 | 258 | 147 | 3 | 19 | 275 | 3 | 257 | 9.06e-66 | 207 |
| MS.gene011476.t1 | AT1G07420 | 46.970 | 198 | 101 | 1 | 85 | 282 | 29 | 222 | 1.40e-64 | 203 |
| MS.gene011476.t1 | AT2G29390 | 45.550 | 191 | 104 | 0 | 85 | 275 | 26 | 216 | 9.65e-63 | 198 |
| MS.gene011476.t1 | AT2G29390 | 39.630 | 270 | 147 | 4 | 19 | 275 | 3 | 269 | 2.53e-62 | 199 |
| MS.gene011476.t1 | AT2G29390 | 47.222 | 180 | 91 | 1 | 102 | 281 | 1 | 176 | 7.23e-61 | 192 |
| MS.gene011476.t1 | AT2G29390 | 47.222 | 180 | 91 | 1 | 102 | 281 | 1 | 176 | 7.23e-61 | 192 |
| MS.gene011476.t1 | AT1G14290 | 29.224 | 219 | 142 | 6 | 64 | 274 | 30 | 243 | 7.37e-14 | 70.5 |
| MS.gene011476.t1 | AT1G14290 | 33.113 | 151 | 92 | 4 | 129 | 274 | 23 | 169 | 1.22e-12 | 65.9 |
Find 72 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGCGGAGATCTTGATTT+TGG | 0.150585 | 8.2:-21443757 | MS.gene011476:CDS |
| ACATATTGTGATTACATCTA+TGG | 0.218915 | 8.2:-21441721 | MS.gene011476:CDS |
| ATAGATTTCTGCATAATAAA+TGG | 0.221052 | 8.2:-21443851 | MS.gene011476:CDS |
| CTTGGACCGGCTATGGTTCC+TGG | 0.248242 | 8.2:-21443720 | MS.gene011476:CDS |
| TATTGTAGATGATTGGAATT+AGG | 0.278974 | 8.2:-21443962 | MS.gene011476:intron |
| ATTTATTATGCAGAAATCTA+TGG | 0.288607 | 8.2:+21443853 | None:intergenic |
| TATAGCAATTAAGCATTTCA+TGG | 0.305557 | 8.2:+21444127 | None:intergenic |
| CTGGTCACATGATTACATTT+TGG | 0.315803 | 8.2:-21443701 | MS.gene011476:CDS |
| AAAATGTTCTTCCTTGTTGT+TGG | 0.321889 | 8.2:-21444093 | MS.gene011476:CDS |
| TGGAGGATTATACGAATTAC+TGG | 0.338989 | 8.2:-21443878 | MS.gene011476:CDS |
| TGCTCAGCGCCACCATAAAA+TGG | 0.348188 | 8.2:+21441802 | None:intergenic |
| TAGATTTCTGCATAATAAAT+GGG | 0.360869 | 8.2:-21443850 | MS.gene011476:CDS |
| GAAGAGAAAGTAATCGGATT+TGG | 0.370486 | 8.2:+21444275 | None:intergenic |
| TGTGATTGTGATTACCTTGA+TGG | 0.370973 | 8.2:+21444044 | None:intergenic |
| ATGGAGAGATAAACGAACTT+TGG | 0.389544 | 8.2:+21444146 | None:intergenic |
| TGCGGCGCCTTATGCACATT+GGG | 0.401426 | 8.2:-21443775 | MS.gene011476:CDS |
| CGAGGGAGAAGATGAGGAAG+AGG | 0.414192 | 8.2:+21444235 | None:intergenic |
| TGGAGAGATAAACGAACTTT+GGG | 0.417171 | 8.2:+21444147 | None:intergenic |
| TCTCGGCGTCGTGGAGAGAT+TGG | 0.432872 | 8.2:+21444355 | None:intergenic |
| CATGAATATCAAGCTCCAAT+TGG | 0.447424 | 8.2:-21443801 | MS.gene011476:CDS |
| TGGAAGATCATATAATGAAC+AGG | 0.447595 | 8.2:-21441338 | MS.gene011476:CDS |
| ATCTCCGCCCAATGTGCATA+AGG | 0.458453 | 8.2:+21443768 | None:intergenic |
| TAAGGCGCCGCAAATCCAAT+TGG | 0.460635 | 8.2:+21443786 | None:intergenic |
| ATGACAGAAGAGAAAGTAAT+CGG | 0.467469 | 8.2:+21444269 | None:intergenic |
| CACGATTACCATCATTATGT+TGG | 0.470556 | 8.2:-21441778 | MS.gene011476:CDS |
| TTGCGGCGCCTTATGCACAT+TGG | 0.470678 | 8.2:-21443776 | MS.gene011476:CDS |
| GTAGTTGAACCATAGGGTTT+CGG | 0.479091 | 8.2:+21444305 | None:intergenic |
| TCAAGCTCCAATTGGATTTG+CGG | 0.480625 | 8.2:-21443793 | MS.gene011476:CDS |
| CGTTTCTTATCCTTCCATCA+AGG | 0.481297 | 8.2:-21444058 | MS.gene011476:intron |
| CTGAAGGAAGATTCGACAAA+TGG | 0.482061 | 8.2:-21441373 | MS.gene011476:CDS |
| GAACCATAGGGTTTCGGCGA+AGG | 0.497179 | 8.2:+21444311 | None:intergenic |
| GAGGAACGAGGGAGAAGATG+AGG | 0.498130 | 8.2:+21444229 | None:intergenic |
| TCACCTTCGCCGAAACCCTA+TGG | 0.501858 | 8.2:-21444314 | MS.gene011476:CDS |
| TCAGAAGAAGATACTTCAAA+AGG | 0.505907 | 8.2:-21441573 | MS.gene011476:intron |
| ATGTCAGGTATGACTTCCCC+TGG | 0.513299 | 8.2:-21441843 | MS.gene011476:intron |
| TAGATGATTGGAATTAGGAC+GGG | 0.513499 | 8.2:-21443957 | MS.gene011476:CDS |
| ACAAATGGTGCAGCGCGGAA+TGG | 0.520094 | 8.2:-21441358 | MS.gene011476:CDS |
| TAGCGGAGTAGTTGAACCAT+AGG | 0.521461 | 8.2:+21444298 | None:intergenic |
| AAACTGATGCAAAATTGCTC+TGG | 0.537490 | 8.2:+21441746 | None:intergenic |
| GTAGATGATTGGAATTAGGA+CGG | 0.538786 | 8.2:-21443958 | MS.gene011476:intron |
| GATTACCATCATTATGTTGG+AGG | 0.541524 | 8.2:-21441775 | MS.gene011476:CDS |
| GCGTCGTGGAGAGATTGGTA+AGG | 0.542904 | 8.2:+21444360 | None:intergenic |
| ATTGCGACCGAGAGAGATCT+CGG | 0.545066 | 8.2:+21444338 | None:intergenic |
| CACGACGCCGAGATCTCTCT+CGG | 0.545396 | 8.2:-21444345 | MS.gene011476:CDS |
| ATGTGACCAGGAACCATAGC+CGG | 0.548009 | 8.2:+21443714 | None:intergenic |
| GAGATAAACGAACTTTGGGC+TGG | 0.549681 | 8.2:+21444151 | None:intergenic |
| ACGGGGTTACCGTTACCGTC+TGG | 0.551559 | 8.2:-21443939 | MS.gene011476:CDS |
| TTTGTCCTCCAACATAATGA+TGG | 0.557552 | 8.2:+21441770 | None:intergenic |
| GTACCCGCTGTGTGTATCAA+TGG | 0.560522 | 8.2:+21443650 | None:intergenic |
| AAAGTAATCGGATTTGGTAG+CGG | 0.569740 | 8.2:+21444281 | None:intergenic |
| TGGATCTTGTACTCATCGAA+AGG | 0.573332 | 8.2:+21444171 | None:intergenic |
| AAACGAGTGGAAGAGGAACG+AGG | 0.585179 | 8.2:+21444217 | None:intergenic |
| GGCGCCTTATGCACATTGGG+CGG | 0.588545 | 8.2:-21443772 | MS.gene011476:CDS |
| AGCGGAGTAGTTGAACCATA+GGG | 0.591782 | 8.2:+21444299 | None:intergenic |
| GGATAAGAAACGAGTTGAAG+AGG | 0.594918 | 8.2:+21444069 | None:intergenic |
| GGATCTTGTACTCATCGAAA+GGG | 0.594949 | 8.2:+21444172 | None:intergenic |
| ATCTCAAATCCAGACGGTAA+CGG | 0.597339 | 8.2:+21443930 | None:intergenic |
| CGAGAGAGATCTCGGCGTCG+TGG | 0.610673 | 8.2:+21444346 | None:intergenic |
| CGTCGTGGAGAGATTGGTAA+GGG | 0.613592 | 8.2:+21444361 | None:intergenic |
| GTGTATCAATGGCTTCAACT+TGG | 0.614849 | 8.2:+21443661 | None:intergenic |
| AGATTTCTGCATAATAAATG+GGG | 0.616388 | 8.2:-21443849 | MS.gene011476:CDS |
| CAAAATGTAATCATGTGACC+AGG | 0.621665 | 8.2:+21443702 | None:intergenic |
| AGATGATTGGAATTAGGACG+GGG | 0.631542 | 8.2:-21443956 | MS.gene011476:CDS |
| AAGCCATTGATACACACAGC+GGG | 0.635131 | 8.2:-21443653 | MS.gene011476:intron |
| ATTGTGATTACCTTGATGGA+AGG | 0.636565 | 8.2:+21444048 | None:intergenic |
| ATAGCCGGTCCAAGAAAAGA+CGG | 0.640967 | 8.2:+21443729 | None:intergenic |
| AACGAGTGGAAGAGGAACGA+GGG | 0.641822 | 8.2:+21444218 | None:intergenic |
| GATAATATCTCAAATCCAGA+CGG | 0.645775 | 8.2:+21443924 | None:intergenic |
| GTTGAAGAGGACCAACAACA+AGG | 0.668088 | 8.2:+21444082 | None:intergenic |
| ATTCGACAAATGGTGCAGCG+CGG | 0.713447 | 8.2:-21441363 | MS.gene011476:CDS |
| TTACATCTATGGAACAGACA+AGG | 0.732719 | 8.2:-21441710 | MS.gene011476:intron |
| GAAGCCATTGATACACACAG+CGG | 0.790862 | 8.2:-21443654 | MS.gene011476:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATATCAACAAAAAA+AGG | + | chr8.2:21442076-21442095 | None:intergenic | 10.0% |
| !! | ATAATAAGTTAAATATGAAA+TGG | - | chr8.2:21443028-21443047 | MS.gene011476:intron | 10.0% |
| !! | ATAATACACAAAAAAATCAA+AGG | + | chr8.2:21442221-21442240 | None:intergenic | 15.0% |
| !!! | ACAAAATATATTCCATTTTA+TGG | - | chr8.2:21443870-21443889 | MS.gene011476:CDS | 15.0% |
| !!! | ATAAAATGGAATATATTTTG+TGG | + | chr8.2:21443871-21443890 | None:intergenic | 15.0% |
| !!! | ATAGATTGTCTTATTATATT+TGG | - | chr8.2:21443542-21443561 | MS.gene011476:intron | 15.0% |
| !!! | ATTTAACTTATTATGAGAAA+AGG | + | chr8.2:21443022-21443041 | None:intergenic | 15.0% |
| !!! | TAAAATGGAATATATTTTGT+GGG | + | chr8.2:21443870-21443889 | None:intergenic | 15.0% |
| !!! | TTTAAAATAGTGATTATATC+TGG | - | chr8.2:21443612-21443631 | MS.gene011476:intron | 15.0% |
| !! | AAAAAAATCAAAGGAGTAAA+AGG | + | chr8.2:21442212-21442231 | None:intergenic | 20.0% |
| !! | AAAAATTTGAAGGACAATTT+AGG | - | chr8.2:21443162-21443181 | MS.gene011476:intron | 20.0% |
| !! | AAAATTTGAAGGACAATTTA+GGG | - | chr8.2:21443163-21443182 | MS.gene011476:intron | 20.0% |
| !! | AAACAAAAAAAATGCTAACT+TGG | - | chr8.2:21443051-21443070 | MS.gene011476:intron | 20.0% |
| !! | AAGACACAATAATCTAAATA+CGG | + | chr8.2:21443118-21443137 | None:intergenic | 20.0% |
| !! | AATTATAACCGTAACTAAAA+CGG | + | chr8.2:21441690-21441709 | None:intergenic | 20.0% |
| !! | ACTAAACAAAATGAAAAATG+TGG | + | chr8.2:21444228-21444247 | None:intergenic | 20.0% |
| !! | ATAGATTTCTGCATAATAAA+TGG | - | chr8.2:21441833-21441852 | MS.gene011476:CDS | 20.0% |
| !! | ATATAGTTGAATGTCAAAAA+TGG | - | chr8.2:21443400-21443419 | MS.gene011476:intron | 20.0% |
| !! | ATATCTATCTAATGAAAAAG+AGG | + | chr8.2:21443745-21443764 | None:intergenic | 20.0% |
| !! | ATTTATTATGCAGAAATCTA+TGG | + | chr8.2:21441834-21441853 | None:intergenic | 20.0% |
| !! | CAATTGAATGTAAAAATTGT+AGG | - | chr8.2:21443486-21443505 | MS.gene011476:intron | 20.0% |
| !! | CATTTAAAGACAATTTAAAC+GGG | + | chr8.2:21443087-21443106 | None:intergenic | 20.0% |
| !! | CCATTTAAAGACAATTTAAA+CGG | + | chr8.2:21443088-21443107 | None:intergenic | 20.0% |
| !! | GAATATTAGGTAAAAGATAA+AGG | + | chr8.2:21442941-21442960 | None:intergenic | 20.0% |
| !! | GATTATTAGGAAAAAGATAA+AGG | - | chr8.2:21443324-21443343 | MS.gene011476:intron | 20.0% |
| !! | GTTGAAGAAAAAAAATTTGA+AGG | - | chr8.2:21443152-21443171 | MS.gene011476:intron | 20.0% |
| !! | GTTTCTTAGTAAGATTATTA+GGG | - | chr8.2:21442277-21442296 | MS.gene011476:intron | 20.0% |
| !! | TAGATTTCTGCATAATAAAT+GGG | - | chr8.2:21441834-21441853 | MS.gene011476:CDS | 20.0% |
| !! | TATCTATCTAATGAAAAAGA+GGG | + | chr8.2:21443744-21443763 | None:intergenic | 20.0% |
| !! | TGTTTCTTAGTAAGATTATT+AGG | - | chr8.2:21442276-21442295 | MS.gene011476:intron | 20.0% |
| !!! | AAATATATTCCATTTTATGG+TGG | - | chr8.2:21443873-21443892 | MS.gene011476:CDS | 20.0% |
| !!! | ATTATTAGTGTATTTTTTGG+TGG | - | chr8.2:21441786-21441805 | MS.gene011476:CDS | 20.0% |
| !!! | CTTTTACCTAATATTCATTT+CGG | - | chr8.2:21442945-21442964 | MS.gene011476:intron | 20.0% |
| !!! | CTTTTTCCTAATAATCATTT+TGG | + | chr8.2:21443320-21443339 | None:intergenic | 20.0% |
| !!! | GCAATTATTAGTGTATTTTT+TGG | - | chr8.2:21441783-21441802 | MS.gene011476:CDS | 20.0% |
| !!! | TTAAATTACCGTTTTAGTTA+CGG | - | chr8.2:21441679-21441698 | MS.gene011476:intron | 20.0% |
| !!! | TTTTGTTTATTGTAGATGAT+TGG | - | chr8.2:21441715-21441734 | MS.gene011476:CDS | 20.0% |
| ! | AAAATAGTGATTATATCTGG+TGG | - | chr8.2:21443615-21443634 | MS.gene011476:intron | 25.0% |
| ! | AAAGGACCAAAATGATTATT+AGG | - | chr8.2:21443311-21443330 | MS.gene011476:intron | 25.0% |
| ! | AACAAAATGAAAAATGTGGA+AGG | + | chr8.2:21444224-21444243 | None:intergenic | 25.0% |
| ! | AAGCAATCAAACATAAAAGT+TGG | + | chr8.2:21443811-21443830 | None:intergenic | 25.0% |
| ! | ACATATTGTGATTACATCTA+TGG | - | chr8.2:21443963-21443982 | MS.gene011476:intron | 25.0% |
| ! | AGATTTCTGCATAATAAATG+GGG | - | chr8.2:21441835-21441854 | MS.gene011476:CDS | 25.0% |
| ! | AGCAATCAAACATAAAAGTT+GGG | + | chr8.2:21443810-21443829 | None:intergenic | 25.0% |
| ! | AGTCCAATTAAAAATATTCC+TGG | - | chr8.2:21442681-21442700 | MS.gene011476:intron | 25.0% |
| ! | ATCTATCTAATGAAAAAGAG+GGG | + | chr8.2:21443743-21443762 | None:intergenic | 25.0% |
| ! | ATTACTTTATGCTGAAAGTT+CGG | - | chr8.2:21442530-21442549 | MS.gene011476:intron | 25.0% |
| ! | CCGTTTAAATTGTCTTTAAA+TGG | - | chr8.2:21443085-21443104 | MS.gene011476:intron | 25.0% |
| ! | TATAGCAATTAAGCATTTCA+TGG | + | chr8.2:21441560-21441579 | None:intergenic | 25.0% |
| ! | TATTGTAGATGATTGGAATT+AGG | - | chr8.2:21441722-21441741 | MS.gene011476:CDS | 25.0% |
| ! | TGTCTGTAGGATTTAATATT+CGG | - | chr8.2:21443686-21443705 | MS.gene011476:CDS | 25.0% |
| ! | TTAAGACCGAAATGAATATT+AGG | + | chr8.2:21442954-21442973 | None:intergenic | 25.0% |
| !! | TAGAAACTTTTTACAAGCTT+TGG | - | chr8.2:21442795-21442814 | MS.gene011476:intron | 25.0% |
| !!! | AAAAAATGTTGACTTAGCAA+TGG | + | chr8.2:21443240-21443259 | None:intergenic | 25.0% |
| !!! | ACATTAAGTGTTCTAAAAAG+AGG | + | chr8.2:21442631-21442650 | None:intergenic | 25.0% |
| !!! | TGTCCAGGAATATTTTTAAT+TGG | + | chr8.2:21442687-21442706 | None:intergenic | 25.0% |
| AAAAGGAAAATGACAGAAAG+TGG | + | chr8.2:21442059-21442078 | None:intergenic | 30.0% | |
| AAGAAACCTGTTTATGATCT+TGG | - | chr8.2:21442561-21442580 | MS.gene011476:intron | 30.0% | |
| ACTACAGCATAAACTTTCAA+AGG | + | chr8.2:21442712-21442731 | None:intergenic | 30.0% | |
| AGAAACCTGTTTATGATCTT+GGG | - | chr8.2:21442562-21442581 | MS.gene011476:intron | 30.0% | |
| ATCATGCTGATGTTTATCAA+TGG | + | chr8.2:21443715-21443734 | None:intergenic | 30.0% | |
| ATGACAGAAGAGAAAGTAAT+CGG | + | chr8.2:21441418-21441437 | None:intergenic | 30.0% | |
| ATTACGTCCAATTGTTTGAA+TGG | + | chr8.2:21442507-21442526 | None:intergenic | 30.0% | |
| CAGCTAAATCAATTCACAAA+AGG | + | chr8.2:21444294-21444313 | None:intergenic | 30.0% | |
| GATAATATCTCAAATCCAGA+CGG | + | chr8.2:21441763-21441782 | None:intergenic | 30.0% | |
| TAACTGTAGAAGCGAATTAA+AGG | + | chr8.2:21443440-21443459 | None:intergenic | 30.0% | |
| TACTCACTTGGAAAAGATAA+AGG | - | chr8.2:21443293-21443312 | MS.gene011476:intron | 30.0% | |
| TAGAAGCGAATTAAAGGAAT+TGG | + | chr8.2:21443434-21443453 | None:intergenic | 30.0% | |
| TATGTGAATATGAAGTGAGA+TGG | + | chr8.2:21442872-21442891 | None:intergenic | 30.0% | |
| TCAGAAGAAGATACTTCAAA+AGG | - | chr8.2:21444111-21444130 | MS.gene011476:CDS | 30.0% | |
| TCATAAACAGGTTTCTTCTA+AGG | + | chr8.2:21442558-21442577 | None:intergenic | 30.0% | |
| TCTATCTAATGAAAAAGAGG+GGG | + | chr8.2:21443742-21443761 | None:intergenic | 30.0% | |
| TGCTTTACTTATCATATGTC+AGG | - | chr8.2:21443826-21443845 | MS.gene011476:CDS | 30.0% | |
| TGGAAGATCATATAATGAAC+AGG | - | chr8.2:21444346-21444365 | MS.gene011476:CDS | 30.0% | |
| TTAAATCCTACAGACAAGAT+TGG | + | chr8.2:21443682-21443701 | None:intergenic | 30.0% | |
| TTACGTCCAATTGTTTGAAT+GGG | + | chr8.2:21442506-21442525 | None:intergenic | 30.0% | |
| TTCCAAAAGGACATTCATTA+CGG | + | chr8.2:21442107-21442126 | None:intergenic | 30.0% | |
| TTGATTTCAAGAAAAACGAG+TGG | + | chr8.2:21441483-21441502 | None:intergenic | 30.0% | |
| TTGCAAATCAATTTCACATG+TGG | + | chr8.2:21444055-21444074 | None:intergenic | 30.0% | |
| ! | AAAATGTTCTTCCTTGTTGT+TGG | - | chr8.2:21441591-21441610 | MS.gene011476:intron | 30.0% |
| ! | AATATATTTTGTGGGATTCC+AGG | + | chr8.2:21443862-21443881 | None:intergenic | 30.0% |
| ! | ATATATTTTGTGGGATTCCA+GGG | + | chr8.2:21443861-21443880 | None:intergenic | 30.0% |
| ! | GATCGATTTCGAAAAGATAA+AGG | + | chr8.2:21442990-21443009 | None:intergenic | 30.0% |
| ! | TGGAAACAGAATTTTGTTGA+AGG | - | chr8.2:21442602-21442621 | MS.gene011476:intron | 30.0% |
| ! | TTGTGAATTGATTTAGCTGA+AGG | - | chr8.2:21444295-21444314 | MS.gene011476:CDS | 30.0% |
| !! | TTTGCTTTGTTTATGTCACA+GGG | - | chr8.2:21444079-21444098 | MS.gene011476:CDS | 30.0% |
| !!! | ACATGATTACATTTTGGTTG+TGG | - | chr8.2:21441989-21442008 | MS.gene011476:intron | 30.0% |
| !!! | ATTAGTGTATTTTTTGGTGG+AGG | - | chr8.2:21441789-21441808 | MS.gene011476:CDS | 30.0% |
| !!! | TTTTGCTTTGTTTATGTCAC+AGG | - | chr8.2:21444078-21444097 | MS.gene011476:CDS | 30.0% |
| AAACCTGTTTATGATCTTGG+GGG | - | chr8.2:21442564-21442583 | MS.gene011476:intron | 35.0% | |
| AAACTGATGCAAAATTGCTC+TGG | + | chr8.2:21443941-21443960 | None:intergenic | 35.0% | |
| AAACTTTCAAAGGTTTGTCC+AGG | + | chr8.2:21442702-21442721 | None:intergenic | 35.0% | |
| AAAGGACATTCATTACGGTT+TGG | + | chr8.2:21442102-21442121 | None:intergenic | 35.0% | |
| AAGCTAATTAAAGCCACAAC+AGG | + | chr8.2:21444175-21444194 | None:intergenic | 35.0% | |
| ACCGACAATAATTCTGCATT+TGG | + | chr8.2:21442480-21442499 | None:intergenic | 35.0% | |
| AGGACAAAAGTTTACTCACT+TGG | - | chr8.2:21443281-21443300 | MS.gene011476:intron | 35.0% | |
| AGTTCATATGCTGTGAGAAA+AGG | - | chr8.2:21443261-21443280 | MS.gene011476:intron | 35.0% | |
| ATCTCAAGGATCTGTAATAG+TGG | - | chr8.2:21442137-21442156 | MS.gene011476:intron | 35.0% | |
| ATGGAGAGATAAACGAACTT+TGG | + | chr8.2:21441541-21441560 | None:intergenic | 35.0% | |
| ATTGTGATTACCTTGATGGA+AGG | + | chr8.2:21441639-21441658 | None:intergenic | 35.0% | |
| CAAAATGTAATCATGTGACC+AGG | + | chr8.2:21441985-21442004 | None:intergenic | 35.0% | |
| CACGATTACCATCATTATGT+TGG | - | chr8.2:21443906-21443925 | MS.gene011476:CDS | 35.0% | |
| CATGAATATCAAGCTCCAAT+TGG | - | chr8.2:21441883-21441902 | MS.gene011476:intron | 35.0% | |
| CCAAATTTCAATGCAGAAAC+TGG | + | chr8.2:21443785-21443804 | None:intergenic | 35.0% | |
| CCAGTTTCTGCATTGAAATT+TGG | - | chr8.2:21443782-21443801 | MS.gene011476:CDS | 35.0% | |
| GAAACCTGTTTATGATCTTG+GGG | - | chr8.2:21442563-21442582 | MS.gene011476:intron | 35.0% | |
| GAAGAGAAAGTAATCGGATT+TGG | + | chr8.2:21441412-21441431 | None:intergenic | 35.0% | |
| GACTTAGCAATGGTTGTATA+AGG | + | chr8.2:21443230-21443249 | None:intergenic | 35.0% | |
| GATTACCATCATTATGTTGG+AGG | - | chr8.2:21443909-21443928 | MS.gene011476:CDS | 35.0% | |
| GCCAAATGCAGAATTATTGT+CGG | - | chr8.2:21442476-21442495 | MS.gene011476:intron | 35.0% | |
| GTAGATGATTGGAATTAGGA+CGG | - | chr8.2:21441726-21441745 | MS.gene011476:CDS | 35.0% | |
| TAATTGCCAATCTTGTCTGT+AGG | - | chr8.2:21443673-21443692 | MS.gene011476:CDS | 35.0% | |
| TACAAGCAAGGTTGTTAAAG+TGG | + | chr8.2:21442356-21442375 | None:intergenic | 35.0% | |
| TACACACACACTTACACATA+TGG | - | chr8.2:21442898-21442917 | MS.gene011476:intron | 35.0% | |
| TAGATGATTGGAATTAGGAC+GGG | - | chr8.2:21441727-21441746 | MS.gene011476:CDS | 35.0% | |
| TCACAAAAGGACAATGAAGT+GGG | + | chr8.2:21444281-21444300 | None:intergenic | 35.0% | |
| TCTCAAGGATCTGTAATAGT+GGG | - | chr8.2:21442138-21442157 | MS.gene011476:intron | 35.0% | |
| TGCATTTGGCTGTAAATTGA+TGG | + | chr8.2:21442466-21442485 | None:intergenic | 35.0% | |
| TGGAGAGATAAACGAACTTT+GGG | + | chr8.2:21441540-21441559 | None:intergenic | 35.0% | |
| TGGAGGATTATACGAATTAC+TGG | - | chr8.2:21441806-21441825 | MS.gene011476:CDS | 35.0% | |
| TGTGATTGTGATTACCTTGA+TGG | + | chr8.2:21441643-21441662 | None:intergenic | 35.0% | |
| TTAACAACCTTGCTTGTATG+AGG | - | chr8.2:21442358-21442377 | MS.gene011476:intron | 35.0% | |
| TTACATCTATGGAACAGACA+AGG | - | chr8.2:21443974-21443993 | MS.gene011476:intron | 35.0% | |
| TTAGCAATGGTTGTATAAGG+TGG | + | chr8.2:21443227-21443246 | None:intergenic | 35.0% | |
| TTCACAAAAGGACAATGAAG+TGG | + | chr8.2:21444282-21444301 | None:intergenic | 35.0% | |
| TTTGTCCTCCAACATAATGA+TGG | + | chr8.2:21443917-21443936 | None:intergenic | 35.0% | |
| ! | AAAGTAATCGGATTTGGTAG+CGG | + | chr8.2:21441406-21441425 | None:intergenic | 35.0% |
| ! | AACCGTAATGAATGTCCTTT+TGG | - | chr8.2:21442102-21442121 | MS.gene011476:intron | 35.0% |
| ! | CTGGTCACATGATTACATTT+TGG | - | chr8.2:21441983-21442002 | MS.gene011476:intron | 35.0% |
| ! | GAAGGACAATTTAGGGATTT+TGG | - | chr8.2:21443170-21443189 | MS.gene011476:intron | 35.0% |
| ! | GATGCTTCAATTTTCTGACA+CGG | - | chr8.2:21442385-21442404 | MS.gene011476:intron | 35.0% |
| ! | TATATTTTGTGGGATTCCAG+GGG | + | chr8.2:21443860-21443879 | None:intergenic | 35.0% |
| ! | TGTTTATGTCACAGGGTTTT+CGG | - | chr8.2:21444086-21444105 | MS.gene011476:CDS | 35.0% |
| !! | TCAAATTCAAGTTGCAAGCA+CGG | + | chr8.2:21443651-21443670 | None:intergenic | 35.0% |
| !!! | GGGTTGCTTTTTGCTTTTAT+GGG | - | chr8.2:21442158-21442177 | MS.gene011476:intron | 35.0% |
| !!! | GGTTGCTTTTTGCTTTTATG+GGG | - | chr8.2:21442159-21442178 | MS.gene011476:intron | 35.0% |
| !!! | TGGGTTGCTTTTTGCTTTTA+TGG | - | chr8.2:21442157-21442176 | MS.gene011476:intron | 35.0% |
| AACCTGTTTATGATCTTGGG+GGG | - | chr8.2:21442565-21442584 | MS.gene011476:intron | 40.0% | |
| AGATGATTGGAATTAGGACG+GGG | - | chr8.2:21441728-21441747 | MS.gene011476:CDS | 40.0% | |
| AGCTGATACAGTTGCAATTG+CGG | - | chr8.2:21442311-21442330 | MS.gene011476:intron | 40.0% | |
| ATACAGTTGCAATTGCGGTT+GGG | - | chr8.2:21442316-21442335 | MS.gene011476:intron | 40.0% | |
| ATCACAACCTCATACAAGCA+AGG | + | chr8.2:21442368-21442387 | None:intergenic | 40.0% | |
| ATCTCAAATCCAGACGGTAA+CGG | + | chr8.2:21441757-21441776 | None:intergenic | 40.0% | |
| ATGCAGAAACTGGAGAAGAA+TGG | + | chr8.2:21443775-21443794 | None:intergenic | 40.0% | |
| CAATCCACCAGATATAAGCA+CGG | + | chr8.2:21443590-21443609 | None:intergenic | 40.0% | |
| CACAAAAGGACAATGAAGTG+GGG | + | chr8.2:21444280-21444299 | None:intergenic | 40.0% | |
| CACCAAGACGTAAATCTTTC+CGG | - | chr8.2:21442752-21442771 | MS.gene011476:intron | 40.0% | |
| CGTTTCTTATCCTTCCATCA+AGG | - | chr8.2:21441626-21441645 | MS.gene011476:intron | 40.0% | |
| CTGAAGGAAGATTCGACAAA+TGG | - | chr8.2:21444311-21444330 | MS.gene011476:CDS | 40.0% | |
| GGATCTTGTACTCATCGAAA+GGG | + | chr8.2:21441515-21441534 | None:intergenic | 40.0% | |
| GGTTCACCCATTCAAACAAT+TGG | - | chr8.2:21442497-21442516 | MS.gene011476:intron | 40.0% | |
| GTAGTTGAACCATAGGGTTT+CGG | + | chr8.2:21441382-21441401 | None:intergenic | 40.0% | |
| GTGTATCAATGGCTTCAACT+TGG | + | chr8.2:21442026-21442045 | None:intergenic | 40.0% | |
| TCAAGAAAAACGAGTGGAAG+AGG | + | chr8.2:21441477-21441496 | None:intergenic | 40.0% | |
| TCAAGCTCCAATTGGATTTG+CGG | - | chr8.2:21441891-21441910 | MS.gene011476:intron | 40.0% | |
| TGCAACTATAGATCTCACTC+AGG | + | chr8.2:21442185-21442204 | None:intergenic | 40.0% | |
| TGGATCTTGTACTCATCGAA+AGG | + | chr8.2:21441516-21441535 | None:intergenic | 40.0% | |
| TTATATCTGGTGGAATGTCC+AGG | - | chr8.2:21443625-21443644 | MS.gene011476:intron | 40.0% | |
| ! | AGGGATTTTGGATGACAGTT+GGG | - | chr8.2:21443182-21443201 | MS.gene011476:intron | 40.0% |
| ! | GATCCAAAGCACTTTCCAAA+AGG | + | chr8.2:21442120-21442139 | None:intergenic | 40.0% |
| ! | GGATAAGAAACGAGTTGAAG+AGG | + | chr8.2:21441618-21441637 | None:intergenic | 40.0% |
| ! | TAGGGATTTTGGATGACAGT+TGG | - | chr8.2:21443181-21443200 | MS.gene011476:intron | 40.0% |
| !! | GTTAGTGATTAGTCTTGCTG+AGG | - | chr8.2:21443564-21443583 | MS.gene011476:intron | 40.0% |
| !! | TGGAAGGTGTTTGAGCAAAA+TGG | + | chr8.2:21444208-21444227 | None:intergenic | 40.0% |
| !!! | TGTCCTTTTGGAAAGTGCTT+TGG | - | chr8.2:21442114-21442133 | MS.gene011476:intron | 40.0% |
| AAGCCACAACAGGCAAATCA+CGG | + | chr8.2:21444165-21444184 | None:intergenic | 45.0% | |
| AAGCCATTGATACACACAGC+GGG | - | chr8.2:21442031-21442050 | MS.gene011476:intron | 45.0% | |
| ACCCTTGAGACAGAAAATGC+CGG | + | chr8.2:21442774-21442793 | None:intergenic | 45.0% | |
| ACCTGTTTATGATCTTGGGG+GGG | - | chr8.2:21442566-21442585 | MS.gene011476:intron | 45.0% | |
| AGCGGAGTAGTTGAACCATA+GGG | + | chr8.2:21441388-21441407 | None:intergenic | 45.0% | |
| ATAGCCGGTCCAAGAAAAGA+CGG | + | chr8.2:21441958-21441977 | None:intergenic | 45.0% | |
| GAAGCCATTGATACACACAG+CGG | - | chr8.2:21442030-21442049 | MS.gene011476:intron | 45.0% | |
| GAGATAAACGAACTTTGGGC+TGG | + | chr8.2:21441536-21441555 | None:intergenic | 45.0% | |
| GATACAGTTGCAATTGCGGT+TGG | - | chr8.2:21442315-21442334 | MS.gene011476:intron | 45.0% | |
| GTTGAAGAGGACCAACAACA+AGG | + | chr8.2:21441605-21441624 | None:intergenic | 45.0% | |
| TAGCGGAGTAGTTGAACCAT+AGG | + | chr8.2:21441389-21441408 | None:intergenic | 45.0% | |
| TGCCGGAAAGATTTACGTCT+TGG | + | chr8.2:21442757-21442776 | None:intergenic | 45.0% | |
| TTGGATGACAGTTGGGAGTT+GGG | - | chr8.2:21443189-21443208 | MS.gene011476:intron | 45.0% | |
| TTTGGATGACAGTTGGGAGT+TGG | - | chr8.2:21443188-21443207 | MS.gene011476:intron | 45.0% | |
| ! | GATTCCGTCTTTTCTTGGAC+CGG | - | chr8.2:21441951-21441970 | MS.gene011476:intron | 45.0% |
| ! | TCCGGCATTTTCTGTCTCAA+GGG | - | chr8.2:21442770-21442789 | MS.gene011476:intron | 45.0% |
| ! | TGGGCGGAGATCTTGATTTT+GGG | - | chr8.2:21441928-21441947 | MS.gene011476:intron | 45.0% |
| ! | TTCCGGCATTTTCTGTCTCA+AGG | - | chr8.2:21442769-21442788 | MS.gene011476:intron | 45.0% |
| ! | TTGGGCGGAGATCTTGATTT+TGG | - | chr8.2:21441927-21441946 | MS.gene011476:intron | 45.0% |
| ! | TTGGGGATTCCGTCTTTTCT+TGG | - | chr8.2:21441946-21441965 | MS.gene011476:intron | 45.0% |
| !! | GGAAAGTGCTTTGGATCTCA+AGG | - | chr8.2:21442123-21442142 | MS.gene011476:intron | 45.0% |
| AAACGAGTGGAAGAGGAACG+AGG | + | chr8.2:21441470-21441489 | None:intergenic | 50.0% | |
| AACGAGTGGAAGAGGAACGA+GGG | + | chr8.2:21441469-21441488 | None:intergenic | 50.0% | |
| ACCCCCCCAAGATCATAAAC+AGG | + | chr8.2:21442570-21442589 | None:intergenic | 50.0% | |
| ATCTCCGCCCAATGTGCATA+AGG | + | chr8.2:21441919-21441938 | None:intergenic | 50.0% | |
| ATGTCAGGTATGACTTCCCC+TGG | - | chr8.2:21443841-21443860 | MS.gene011476:CDS | 50.0% | |
| ATGTGACCAGGAACCATAGC+CGG | + | chr8.2:21441973-21441992 | None:intergenic | 50.0% | |
| ATTCGACAAATGGTGCAGCG+CGG | - | chr8.2:21444321-21444340 | MS.gene011476:CDS | 50.0% | |
| ATTGCGACCGAGAGAGATCT+CGG | + | chr8.2:21441349-21441368 | None:intergenic | 50.0% | |
| CGTCGTGGAGAGATTGGTAA+GGG | + | chr8.2:21441326-21441345 | None:intergenic | 50.0% | |
| GTACCCGCTGTGTGTATCAA+TGG | + | chr8.2:21442037-21442056 | None:intergenic | 50.0% | |
| GTTTATGATCTTGGGGGGGT+GGG | - | chr8.2:21442570-21442589 | MS.gene011476:intron | 50.0% | |
| TGCTCAGCGCCACCATAAAA+TGG | + | chr8.2:21443885-21443904 | None:intergenic | 50.0% | |
| TGTTTATGATCTTGGGGGGG+TGG | - | chr8.2:21442569-21442588 | MS.gene011476:intron | 50.0% | |
| TTTATGATCTTGGGGGGGTG+GGG | - | chr8.2:21442571-21442590 | MS.gene011476:intron | 50.0% | |
| ! | GAACCGTGATTTGCCTGTTG+TGG | - | chr8.2:21444159-21444178 | MS.gene011476:CDS | 50.0% |
| ! | GGGCGGAGATCTTGATTTTG+GGG | - | chr8.2:21441929-21441948 | MS.gene011476:intron | 50.0% |
| ! | GTCTTTTCTTGGACCGGCTA+TGG | - | chr8.2:21441957-21441976 | MS.gene011476:intron | 50.0% |
| !! | TAAGGCGCCGCAAATCCAAT+TGG | + | chr8.2:21441901-21441920 | None:intergenic | 50.0% |
| ACAAATGGTGCAGCGCGGAA+TGG | - | chr8.2:21444326-21444345 | MS.gene011476:CDS | 55.0% | |
| CGAGGGAGAAGATGAGGAAG+AGG | + | chr8.2:21441452-21441471 | None:intergenic | 55.0% | |
| GAACCATAGGGTTTCGGCGA+AGG | + | chr8.2:21441376-21441395 | None:intergenic | 55.0% | |
| GAGGAACGAGGGAGAAGATG+AGG | + | chr8.2:21441458-21441477 | None:intergenic | 55.0% | |
| GAGGCCGTGCTTATATCTGG+TGG | - | chr8.2:21443583-21443602 | MS.gene011476:intron | 55.0% | |
| GCGTCGTGGAGAGATTGGTA+AGG | + | chr8.2:21441327-21441346 | None:intergenic | 55.0% | |
| GCTGAGGCCGTGCTTATATC+TGG | - | chr8.2:21443580-21443599 | MS.gene011476:intron | 55.0% | |
| TCACCTTCGCCGAAACCCTA+TGG | - | chr8.2:21441370-21441389 | MS.gene011476:CDS | 55.0% | |
| TGCGGCGCCTTATGCACATT+GGG | - | chr8.2:21441909-21441928 | MS.gene011476:intron | 55.0% | |
| TTATGATCTTGGGGGGGTGG+GGG | - | chr8.2:21442572-21442591 | MS.gene011476:intron | 55.0% | |
| TTGCGGCGCCTTATGCACAT+TGG | - | chr8.2:21441908-21441927 | MS.gene011476:intron | 55.0% | |
| !! | TTCAAGTTGCAAGCACGGCC+TGG | + | chr8.2:21443646-21443665 | None:intergenic | 55.0% |
| ACGGGGTTACCGTTACCGTC+TGG | - | chr8.2:21441745-21441764 | MS.gene011476:CDS | 60.0% | |
| CACGACGCCGAGATCTCTCT+CGG | - | chr8.2:21441339-21441358 | MS.gene011476:CDS | 60.0% | |
| CTTGGACCGGCTATGGTTCC+TGG | - | chr8.2:21441964-21441983 | MS.gene011476:intron | 60.0% | |
| GGCGCCTTATGCACATTGGG+CGG | - | chr8.2:21441912-21441931 | MS.gene011476:intron | 60.0% | |
| TATGATCTTGGGGGGGTGGG+GGG | - | chr8.2:21442573-21442592 | MS.gene011476:intron | 60.0% | |
| TCTCGGCGTCGTGGAGAGAT+TGG | + | chr8.2:21441332-21441351 | None:intergenic | 60.0% | |
| CGAGAGAGATCTCGGCGTCG+TGG | + | chr8.2:21441341-21441360 | None:intergenic | 65.0% | |
| ! | GGGGGGGTGGGGGGCTCTGT+TGG | - | chr8.2:21442582-21442601 | MS.gene011476:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 21441318 | 21444388 | 21441318 | ID=MS.gene011476 |
| chr8.2 | mRNA | 21441318 | 21444388 | 21441318 | ID=MS.gene011476.t1;Parent=MS.gene011476 |
| chr8.2 | exon | 21444059 | 21444388 | 21444059 | ID=MS.gene011476.t1.exon1;Parent=MS.gene011476.t1 |
| chr8.2 | CDS | 21444059 | 21444388 | 21444059 | ID=cds.MS.gene011476.t1;Parent=MS.gene011476.t1 |
| chr8.2 | exon | 21443654 | 21443976 | 21443654 | ID=MS.gene011476.t1.exon2;Parent=MS.gene011476.t1 |
| chr8.2 | CDS | 21443654 | 21443976 | 21443654 | ID=cds.MS.gene011476.t1;Parent=MS.gene011476.t1 |
| chr8.2 | exon | 21441711 | 21441858 | 21441711 | ID=MS.gene011476.t1.exon3;Parent=MS.gene011476.t1 |
| chr8.2 | CDS | 21441711 | 21441858 | 21441711 | ID=cds.MS.gene011476.t1;Parent=MS.gene011476.t1 |
| chr8.2 | exon | 21441574 | 21441606 | 21441574 | ID=MS.gene011476.t1.exon4;Parent=MS.gene011476.t1 |
| chr8.2 | CDS | 21441574 | 21441606 | 21441574 | ID=cds.MS.gene011476.t1;Parent=MS.gene011476.t1 |
| chr8.2 | exon | 21441318 | 21441395 | 21441318 | ID=MS.gene011476.t1.exon5;Parent=MS.gene011476.t1 |
| chr8.2 | CDS | 21441318 | 21441395 | 21441318 | ID=cds.MS.gene011476.t1;Parent=MS.gene011476.t1 |
| Gene Sequence |
| Protein sequence |
