Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027563.t1 | XP_003613314.1 | 98.6 | 215 | 3 | 0 | 61 | 275 | 57 | 271 | 6.50E-123 | 450.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027563.t1 | Q8VWZ8 | 84.1 | 201 | 32 | 0 | 62 | 262 | 58 | 258 | 9.2e-102 | 371.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027563.t1 | G7K2U7 | 98.6 | 215 | 3 | 0 | 61 | 275 | 3 | 217 | 4.7e-123 | 450.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27841 | MS.gene027563 | PPI |
| MS.gene77418 | MS.gene027563 | PPI |
| MS.gene62845 | MS.gene027563 | PPI |
| MS.gene72111 | MS.gene027563 | PPI |
| MS.gene71888 | MS.gene027563 | PPI |
| MS.gene027563 | MS.gene070560 | PPI |
| MS.gene062512 | MS.gene027563 | PPI |
| MS.gene023608 | MS.gene027563 | PPI |
| MS.gene57886 | MS.gene027563 | PPI |
| MS.gene53261 | MS.gene027563 | PPI |
| MS.gene53264 | MS.gene027563 | PPI |
| MS.gene032882 | MS.gene027563 | PPI |
| MS.gene55207 | MS.gene027563 | PPI |
| MS.gene38145 | MS.gene027563 | PPI |
| MS.gene68324 | MS.gene027563 | PPI |
| MS.gene020952 | MS.gene027563 | PPI |
| MS.gene011476 | MS.gene027563 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027563.t1 | MTR_5g035190 | 98.605 | 215 | 3 | 0 | 61 | 275 | 3 | 217 | 1.79e-161 | 447 |
| MS.gene027563.t1 | MTR_5g035190 | 98.605 | 215 | 3 | 0 | 61 | 275 | 57 | 271 | 1.56e-160 | 447 |
| MS.gene027563.t1 | MTR_8g063210 | 90.233 | 215 | 21 | 0 | 61 | 275 | 57 | 271 | 9.56e-149 | 417 |
| MS.gene027563.t1 | MTR_6g039970 | 82.326 | 215 | 38 | 0 | 61 | 275 | 57 | 271 | 4.47e-135 | 382 |
| MS.gene027563.t1 | MTR_4g102060 | 44.878 | 205 | 113 | 0 | 71 | 275 | 85 | 289 | 7.07e-63 | 200 |
| MS.gene027563.t1 | MTR_7g074900 | 46.369 | 179 | 96 | 0 | 86 | 264 | 100 | 278 | 3.36e-58 | 187 |
| MS.gene027563.t1 | MTR_5g040320 | 28.571 | 224 | 146 | 8 | 51 | 267 | 37 | 253 | 6.53e-14 | 70.1 |
| MS.gene027563.t1 | MTR_1g097310 | 33.094 | 139 | 80 | 5 | 128 | 259 | 110 | 242 | 1.26e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027563.t1 | AT2G29390 | 81.905 | 210 | 38 | 0 | 54 | 263 | 9 | 218 | 8.76e-132 | 372 |
| MS.gene027563.t1 | AT2G29390 | 83.744 | 203 | 33 | 0 | 61 | 263 | 50 | 252 | 4.57e-131 | 372 |
| MS.gene027563.t1 | AT2G29390 | 83.744 | 203 | 33 | 0 | 61 | 263 | 57 | 259 | 6.53e-131 | 371 |
| MS.gene027563.t1 | AT1G07420 | 79.263 | 217 | 45 | 0 | 48 | 264 | 6 | 222 | 6.13e-129 | 365 |
| MS.gene027563.t1 | AT1G07420 | 82.843 | 204 | 35 | 0 | 61 | 264 | 57 | 260 | 1.21e-128 | 366 |
| MS.gene027563.t1 | AT2G29390 | 79.535 | 215 | 32 | 1 | 61 | 263 | 57 | 271 | 9.30e-128 | 364 |
| MS.gene027563.t1 | AT2G29390 | 85.795 | 176 | 25 | 0 | 88 | 263 | 1 | 176 | 3.38e-115 | 328 |
| MS.gene027563.t1 | AT2G29390 | 85.795 | 176 | 25 | 0 | 88 | 263 | 1 | 176 | 3.38e-115 | 328 |
| MS.gene027563.t1 | AT4G12110 | 44.608 | 204 | 113 | 0 | 71 | 274 | 87 | 290 | 7.38e-63 | 200 |
| MS.gene027563.t1 | AT4G22755 | 45.098 | 204 | 109 | 1 | 71 | 274 | 86 | 286 | 5.46e-61 | 195 |
| MS.gene027563.t1 | AT4G22756 | 40.171 | 234 | 134 | 1 | 47 | 274 | 57 | 290 | 7.65e-61 | 194 |
| MS.gene027563.t1 | AT1G69640 | 34.091 | 176 | 96 | 8 | 108 | 269 | 91 | 260 | 7.35e-14 | 70.1 |
| MS.gene027563.t1 | AT1G14290 | 29.756 | 205 | 127 | 8 | 56 | 251 | 38 | 234 | 8.67e-13 | 67.0 |
| MS.gene027563.t1 | AT1G14290 | 31.395 | 172 | 103 | 7 | 111 | 272 | 19 | 185 | 1.39e-12 | 65.1 |
Find 70 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTATGTATTAGGATATT+TGG | 0.108814 | 5.1:+25959231 | MS.gene027563:intron |
| TCAAACTTCTTACCTTTATA+TGG | 0.220586 | 5.1:+25958639 | MS.gene027563:CDS |
| GGAGGACTTTATATTCTATT+GGG | 0.240593 | 5.1:+25958285 | MS.gene027563:CDS |
| ATACATTTATCCTGAGCTTC+AGG | 0.260988 | 5.1:-25958013 | None:intergenic |
| TGGAGGACTTTATATTCTAT+TGG | 0.278117 | 5.1:+25958284 | MS.gene027563:CDS |
| ACTTGATAACTTTGTGGTTA+TGG | 0.284408 | 5.1:+25958553 | MS.gene027563:CDS |
| CTTGGGTTTGCAACCATTGT+TGG | 0.325863 | 5.1:+25958510 | MS.gene027563:CDS |
| CGCCTGTTGCTATATCATTT+CGG | 0.345848 | 5.1:+25958040 | MS.gene027563:CDS |
| ACAGGATATTGCACACAAAA+TGG | 0.349309 | 5.1:+25958311 | MS.gene027563:CDS |
| ATTGTTGGTCCTGCCATCAC+TGG | 0.360355 | 5.1:+25958525 | MS.gene027563:CDS |
| TGAAGGTATGCGACACCATT+TGG | 0.370092 | 5.1:+25958447 | MS.gene027563:intron |
| AAACCCAAGGAAAAGTATTT+CGG | 0.381254 | 5.1:-25958496 | None:intergenic |
| CCGCATCATGTGACGTGAAC+TGG | 0.388262 | 5.1:-25957723 | None:intergenic |
| AAACTAAAACGACCTACATT+TGG | 0.389659 | 5.1:-25957700 | None:intergenic |
| CGTTTGTTGTACACTAAGTC+CGG | 0.404710 | 5.1:+25958789 | MS.gene027563:CDS |
| GAGACTGACCCGCCATATAA+AGG | 0.405139 | 5.1:-25958651 | None:intergenic |
| GGCCCCACTTGATAACTTTG+TGG | 0.415251 | 5.1:+25958547 | MS.gene027563:CDS |
| AGGATATTTGGAACTGATGT+AGG | 0.447738 | 5.1:+25959243 | MS.gene027563:intron |
| ATATCCTGTGTTCAAATACA+TGG | 0.451726 | 5.1:+25958090 | MS.gene027563:CDS |
| TTGAGGGACTCCATGGGAAA+TGG | 0.456424 | 5.1:-25958620 | None:intergenic |
| AAATAATAGCCCTGAAGCTC+AGG | 0.462452 | 5.1:+25958003 | MS.gene027563:CDS |
| CACCGAAATGATATAGCAAC+AGG | 0.465624 | 5.1:-25958042 | None:intergenic |
| GAATGTTGATGAATAGTTCC+CGG | 0.467989 | 5.1:-25958808 | None:intergenic |
| TACATTTATCCTGAGCTTCA+GGG | 0.477416 | 5.1:-25958012 | None:intergenic |
| CTAAAACGACCTACATTTGG+AGG | 0.478350 | 5.1:-25957697 | None:intergenic |
| TTCATCAACATTCACTTACA+TGG | 0.481785 | 5.1:+25958818 | MS.gene027563:CDS |
| TGTGTGAAAGGCCAACTAAA+AGG | 0.490513 | 5.1:-25957667 | None:intergenic |
| TATAAAGGTAAGAAGTTTGA+GGG | 0.492510 | 5.1:-25958636 | None:intergenic |
| TTGTTGGTCCTGCCATCACT+GGG | 0.499360 | 5.1:+25958526 | MS.gene027563:CDS |
| ACTTCTTACCTTTATATGGC+GGG | 0.503573 | 5.1:+25958643 | MS.gene027563:CDS |
| GCCCTCTCAATCCATACAAA+AGG | 0.506678 | 5.1:-25957156 | None:intergenic |
| GTGAAAGTACCAGGATGGTA+GGG | 0.507784 | 5.1:-25958131 | None:intergenic |
| GACACCATTTGGACTTACTT+CGG | 0.518283 | 5.1:+25958458 | MS.gene027563:CDS |
| AAGAAGTTTGAGGGACTCCA+TGG | 0.521768 | 5.1:-25958627 | None:intergenic |
| TATTCCGAAGTAAGTCCAAA+TGG | 0.522798 | 5.1:-25958462 | None:intergenic |
| GGAGGGAAGTATTGTGTGAA+AGG | 0.525704 | 5.1:-25957679 | None:intergenic |
| ATCCACACTGCATGTTGCTG+TGG | 0.531734 | 5.1:+25957771 | MS.gene027563:CDS |
| GGTGAAAGTACCAGGATGGT+AGG | 0.535188 | 5.1:-25958132 | None:intergenic |
| ATATAAAGGTAAGAAGTTTG+AGG | 0.535634 | 5.1:-25958637 | None:intergenic |
| CAACATTCACTTACATGGAC+CGG | 0.539104 | 5.1:+25958823 | MS.gene027563:CDS |
| TATCAAGTGGGGCCCAGTGA+TGG | 0.541295 | 5.1:-25958538 | None:intergenic |
| GAGGACTTTATATTCTATTG+GGG | 0.543637 | 5.1:+25958286 | MS.gene027563:CDS |
| AAGTGGGGCCCAGTGATGGC+AGG | 0.544565 | 5.1:-25958534 | None:intergenic |
| GTAATCTTCCCCTACCATCC+TGG | 0.549586 | 5.1:+25958122 | MS.gene027563:CDS |
| CCAGTTCACGTCACATGATG+CGG | 0.552009 | 5.1:+25957723 | MS.gene027563:CDS |
| ATTGCGGTTACCATTTCCCA+TGG | 0.553896 | 5.1:+25958610 | MS.gene027563:CDS |
| AACTTCTTACCTTTATATGG+CGG | 0.558008 | 5.1:+25958642 | MS.gene027563:CDS |
| GATAACTTTGTGGTTATGGA+TGG | 0.559169 | 5.1:+25958557 | MS.gene027563:CDS |
| CCAAGGAAAAGTATTTCGGC+AGG | 0.562424 | 5.1:-25958492 | None:intergenic |
| TGATGCGGCTGCAATATTTG+TGG | 0.564540 | 5.1:+25957738 | MS.gene027563:CDS |
| TTTGTATGGATTGAGAGGGC+AGG | 0.573114 | 5.1:+25957159 | MS.gene027563:CDS |
| CAATACTTCCCTCCAAATGT+AGG | 0.573201 | 5.1:+25957688 | MS.gene027563:CDS |
| TGAAAGTACCAGGATGGTAG+GGG | 0.586304 | 5.1:-25958130 | None:intergenic |
| CAACAATGGTTGCAAACCCA+AGG | 0.591178 | 5.1:-25958509 | None:intergenic |
| GTTTGTTGTACACTAAGTCC+GGG | 0.594576 | 5.1:+25958790 | MS.gene027563:CDS |
| TATCCTGTGTTCAAATACAT+GGG | 0.627953 | 5.1:+25958091 | MS.gene027563:CDS |
| AGAAGGTGAAAGTACCAGGA+TGG | 0.634868 | 5.1:-25958136 | None:intergenic |
| AGTGATGGCAGGACCAACAA+TGG | 0.638026 | 5.1:-25958523 | None:intergenic |
| TAACCACAAAGTTATCAAGT+GGG | 0.641518 | 5.1:-25958550 | None:intergenic |
| AGAAGTTTGAGGGACTCCAT+GGG | 0.642178 | 5.1:-25958626 | None:intergenic |
| TAAAACGACCTACATTTGGA+GGG | 0.644044 | 5.1:-25957696 | None:intergenic |
| GAGACAGTTGAGGCACATTG+CGG | 0.646359 | 5.1:+25958594 | MS.gene027563:CDS |
| ATAACCACAAAGTTATCAAG+TGG | 0.646385 | 5.1:-25958551 | None:intergenic |
| AGGACTTTATATTCTATTGG+GGG | 0.650421 | 5.1:+25958287 | MS.gene027563:CDS |
| ATGCCCATGTATTTGAACAC+AGG | 0.658547 | 5.1:-25958094 | None:intergenic |
| ACAAACGATGATGATAATCG+TGG | 0.659889 | 5.1:-25958773 | None:intergenic |
| AACCACAAAGTTATCAAGTG+GGG | 0.661563 | 5.1:-25958549 | None:intergenic |
| GAGAGTCTTAGAGACAGTTG+AGG | 0.667372 | 5.1:+25958584 | MS.gene027563:CDS |
| AACCACAGCAACATGCAGTG+TGG | 0.700563 | 5.1:-25957773 | None:intergenic |
| CTCACTCGTGATGTACACTG+TGG | 0.757598 | 5.1:-25958348 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATGTTTTACTTCATTT+TGG | + | chr5.1:25958264-25958283 | MS.gene027563:CDS | 15.0% |
| !!! | ATTTACTTCATTTTTTATGA+TGG | + | chr5.1:25959142-25959161 | MS.gene027563:intron | 15.0% |
| !! | ACTAATGAAAGATATATTCA+AGG | - | chr5.1:25958976-25958995 | None:intergenic | 20.0% |
| !! | AGTTCTACATATAAATCTAT+TGG | + | chr5.1:25957949-25957968 | MS.gene027563:intron | 20.0% |
| !! | TTACTTAACAAGATGAAATT+TGG | + | chr5.1:25958215-25958234 | MS.gene027563:intron | 20.0% |
| !! | TTTCTATGTATTAGGATATT+TGG | + | chr5.1:25959231-25959250 | MS.gene027563:intron | 20.0% |
| !!! | CTGAATTTTTTCTATGTATT+AGG | + | chr5.1:25959223-25959242 | MS.gene027563:intron | 20.0% |
| !!! | GTTCTTTTTTTGCAAATATT+TGG | + | chr5.1:25958174-25958193 | MS.gene027563:intron | 20.0% |
| !!! | GTTGTTCTAATTATTACTTT+TGG | + | chr5.1:25957631-25957650 | MS.gene027563:intron | 20.0% |
| !!! | TTGTAATTTTGATACATTCT+AGG | - | chr5.1:25958915-25958934 | None:intergenic | 20.0% |
| ! | AAAATATGTTTGATGCTTAC+CGG | - | chr5.1:25958845-25958864 | None:intergenic | 25.0% |
| ! | AAATCAGATCTGAAAAATTG+AGG | - | chr5.1:25958753-25958772 | None:intergenic | 25.0% |
| ! | AAATGAAGTAAATCGTCAAT+TGG | - | chr5.1:25959135-25959154 | None:intergenic | 25.0% |
| ! | AATGAAGTAAATCGTCAATT+GGG | - | chr5.1:25959134-25959153 | None:intergenic | 25.0% |
| ! | ATATAAAGGTAAGAAGTTTG+AGG | - | chr5.1:25958640-25958659 | None:intergenic | 25.0% |
| ! | ATCATCTATGAACTTCTATA+GGG | + | chr5.1:25958411-25958430 | MS.gene027563:intron | 25.0% |
| ! | GGATATGAAAAAATCATAAC+AGG | - | chr5.1:25958076-25958095 | None:intergenic | 25.0% |
| ! | TATAAAGGTAAGAAGTTTGA+GGG | - | chr5.1:25958639-25958658 | None:intergenic | 25.0% |
| ! | TATGTATTTACATGTGAAAG+AGG | - | chr5.1:25957930-25957949 | None:intergenic | 25.0% |
| ! | TCAAACTTCTTACCTTTATA+TGG | + | chr5.1:25958639-25958658 | MS.gene027563:CDS | 25.0% |
| ! | TTGTGTAATACATACAGATA+AGG | - | chr5.1:25957590-25957609 | None:intergenic | 25.0% |
| !! | AATGTTTTACTTCATTTTGG+AGG | + | chr5.1:25958267-25958286 | MS.gene027563:CDS | 25.0% |
| !! | ATCAAACATATTTTCCCTTA+AGG | + | chr5.1:25958851-25958870 | MS.gene027563:intron | 25.0% |
| !! | ATTACATCTCTTGTTGTATT+TGG | + | chr5.1:25957278-25957297 | MS.gene027563:intron | 25.0% |
| !!! | TGTTACGTTTTTAGAGTAAA+AGG | + | chr5.1:25958879-25958898 | MS.gene027563:intron | 25.0% |
| !!! | TTTTTTTCCTTCTCATTTTG+AGG | + | chr5.1:25957832-25957851 | MS.gene027563:intron | 25.0% |
| AAACGTAACAAGTATCCTTA+AGG | - | chr5.1:25958869-25958888 | None:intergenic | 30.0% | |
| AAACTAAAACGACCTACATT+TGG | - | chr5.1:25957703-25957722 | None:intergenic | 30.0% | |
| AACGTAACAAGTATCCTTAA+GGG | - | chr5.1:25958868-25958887 | None:intergenic | 30.0% | |
| AACTAGCTGATATTAAGCAA+AGG | - | chr5.1:25958688-25958707 | None:intergenic | 30.0% | |
| AACTTCTTACCTTTATATGG+CGG | + | chr5.1:25958642-25958661 | MS.gene027563:CDS | 30.0% | |
| AGATAAGGAAGAAGTTGAAA+AGG | - | chr5.1:25957575-25957594 | None:intergenic | 30.0% | |
| AGGAAGAATCTACAACATAA+AGG | - | chr5.1:25957239-25957258 | None:intergenic | 30.0% | |
| AGGACTTTATATTCTATTGG+GGG | + | chr5.1:25958287-25958306 | MS.gene027563:CDS | 30.0% | |
| ATAACCACAAAGTTATCAAG+TGG | - | chr5.1:25958554-25958573 | None:intergenic | 30.0% | |
| ATATCCTGTGTTCAAATACA+TGG | + | chr5.1:25958090-25958109 | MS.gene027563:CDS | 30.0% | |
| CTGATATTTGACAACACTAA+AGG | - | chr5.1:25957411-25957430 | None:intergenic | 30.0% | |
| CTGTATGTATTACACAACAT+AGG | + | chr5.1:25957593-25957612 | MS.gene027563:intron | 30.0% | |
| GAGATGTAATTCATAACAGT+AGG | - | chr5.1:25957268-25957287 | None:intergenic | 30.0% | |
| GAGGACTTTATATTCTATTG+GGG | + | chr5.1:25958286-25958305 | MS.gene027563:CDS | 30.0% | |
| GATAAGGAAGAAGTTGAAAA+GGG | - | chr5.1:25957574-25957593 | None:intergenic | 30.0% | |
| GATCATCTATGAACTTCTAT+AGG | + | chr5.1:25958410-25958429 | MS.gene027563:intron | 30.0% | |
| GGAGGACTTTATATTCTATT+GGG | + | chr5.1:25958285-25958304 | MS.gene027563:CDS | 30.0% | |
| TAACCACAAAGTTATCAAGT+GGG | - | chr5.1:25958553-25958572 | None:intergenic | 30.0% | |
| TAATTTCCTGTCAGTATTGT+GGG | - | chr5.1:25957897-25957916 | None:intergenic | 30.0% | |
| TATCCTGTGTTCAAATACAT+GGG | + | chr5.1:25958091-25958110 | MS.gene027563:CDS | 30.0% | |
| TGGAGGACTTTATATTCTAT+TGG | + | chr5.1:25958284-25958303 | MS.gene027563:CDS | 30.0% | |
| TTCATAACAGTAGGAACATA+AGG | - | chr5.1:25957259-25957278 | None:intergenic | 30.0% | |
| TTCATCAACATTCACTTACA+TGG | + | chr5.1:25958818-25958837 | MS.gene027563:CDS | 30.0% | |
| TTTGCTTAATATCAGCTAGT+TGG | + | chr5.1:25958687-25958706 | MS.gene027563:intron | 30.0% | |
| ! | AATTGTGGTTGTGGATTTTA+TGG | + | chr5.1:25957439-25957458 | MS.gene027563:intron | 30.0% |
| ! | ACTTGATAACTTTGTGGTTA+TGG | + | chr5.1:25958553-25958572 | MS.gene027563:CDS | 30.0% |
| ! | TAGTAAAGCATCAAATTCCA+AGG | - | chr5.1:25959193-25959212 | None:intergenic | 30.0% |
| ! | TTACATGTGTTCTGCATTTT+TGG | + | chr5.1:25958376-25958395 | MS.gene027563:intron | 30.0% |
| !! | AAACCCAAGGAAAAGTATTT+CGG | - | chr5.1:25958499-25958518 | None:intergenic | 30.0% |
| !!! | AAGATGAAATTTGGTTTTGC+AGG | + | chr5.1:25958224-25958243 | MS.gene027563:intron | 30.0% |
| AACCACAAAGTTATCAAGTG+GGG | - | chr5.1:25958552-25958571 | None:intergenic | 35.0% | |
| ACAAACGATGATGATAATCG+TGG | - | chr5.1:25958776-25958795 | None:intergenic | 35.0% | |
| ACAGGATATTGCACACAAAA+TGG | + | chr5.1:25958311-25958330 | MS.gene027563:CDS | 35.0% | |
| ACTGTAGTTGTTGAGTGTAT+TGG | - | chr5.1:25959087-25959106 | None:intergenic | 35.0% | |
| ACTTCTTACCTTTATATGGC+GGG | + | chr5.1:25958643-25958662 | MS.gene027563:CDS | 35.0% | |
| AGTTGAAAAGGGAAATCTCA+AGG | - | chr5.1:25957563-25957582 | None:intergenic | 35.0% | |
| ATACATTTATCCTGAGCTTC+AGG | - | chr5.1:25958016-25958035 | None:intergenic | 35.0% | |
| ATTTGACAACACTAAAGGCA+GGG | - | chr5.1:25957406-25957425 | None:intergenic | 35.0% | |
| GATAACTTTGTGGTTATGGA+TGG | + | chr5.1:25958557-25958576 | MS.gene027563:CDS | 35.0% | |
| GATGAACATTTGTAATGCCT+TGG | + | chr5.1:25959173-25959192 | MS.gene027563:intron | 35.0% | |
| GCAAAAAAAGAACCCAACAA+GGG | - | chr5.1:25958167-25958186 | None:intergenic | 35.0% | |
| GTAATTTCCTGTCAGTATTG+TGG | - | chr5.1:25957898-25957917 | None:intergenic | 35.0% | |
| TAAAACGACCTACATTTGGA+GGG | - | chr5.1:25957699-25957718 | None:intergenic | 35.0% | |
| TACATTTATCCTGAGCTTCA+GGG | - | chr5.1:25958015-25958034 | None:intergenic | 35.0% | |
| TAGCACTGTTCTTAGAACAA+TGG | - | chr5.1:25957528-25957547 | None:intergenic | 35.0% | |
| TAGCTGATATTAAGCAAAGG+TGG | - | chr5.1:25958685-25958704 | None:intergenic | 35.0% | |
| TATTCCGAAGTAAGTCCAAA+TGG | - | chr5.1:25958465-25958484 | None:intergenic | 35.0% | |
| TATTTGACAACACTAAAGGC+AGG | - | chr5.1:25957407-25957426 | None:intergenic | 35.0% | |
| TGCAAAAAAAGAACCCAACA+AGG | - | chr5.1:25958168-25958187 | None:intergenic | 35.0% | |
| ! | AGGATATTTGGAACTGATGT+AGG | + | chr5.1:25959243-25959262 | MS.gene027563:intron | 35.0% |
| ! | AGGGTTTTACTGTATTGTGA+AGG | + | chr5.1:25958430-25958449 | MS.gene027563:intron | 35.0% |
| ! | GAATGTTGATGAATAGTTCC+CGG | - | chr5.1:25958811-25958830 | None:intergenic | 35.0% |
| ! | TATCTGGACTTCCTTTTGTA+TGG | + | chr5.1:25957145-25957164 | MS.gene027563:CDS | 35.0% |
| ! | TCCTAGAATGTGTCTTTTGT+TGG | - | chr5.1:25959051-25959070 | None:intergenic | 35.0% |
| ! | TTGATTGTCAGCCTTTTAGT+TGG | + | chr5.1:25957656-25957675 | MS.gene027563:intron | 35.0% |
| !! | ACATAGGTGTTGATACTGAT+AGG | + | chr5.1:25957609-25957628 | MS.gene027563:intron | 35.0% |
| !! | TCCTTTTGTATGGATTGAGA+GGG | + | chr5.1:25957155-25957174 | MS.gene027563:CDS | 35.0% |
| !! | TTATTTTTCGCCTGCATGAA+AGG | - | chr5.1:25957989-25958008 | None:intergenic | 35.0% |
| !! | TTCCTTTTGTATGGATTGAG+AGG | + | chr5.1:25957154-25957173 | MS.gene027563:CDS | 35.0% |
| !!! | GAGAGTGTTTTCTTCTTATC+TGG | + | chr5.1:25957129-25957148 | MS.gene027563:CDS | 35.0% |
| AAATAATAGCCCTGAAGCTC+AGG | + | chr5.1:25958003-25958022 | MS.gene027563:CDS | 40.0% | |
| ACGAAGGAAAGACACATTCA+GGG | - | chr5.1:25958944-25958963 | None:intergenic | 40.0% | |
| ACTAATGCTTCCTTTCATGC+AGG | + | chr5.1:25957976-25957995 | MS.gene027563:intron | 40.0% | |
| ATATCAGCCATGGCAAATTG+TGG | + | chr5.1:25957424-25957443 | MS.gene027563:intron | 40.0% | |
| ATGCCCATGTATTTGAACAC+AGG | - | chr5.1:25958097-25958116 | None:intergenic | 40.0% | |
| CAACATTCACTTACATGGAC+CGG | + | chr5.1:25958823-25958842 | MS.gene027563:CDS | 40.0% | |
| CAATACTTCCCTCCAAATGT+AGG | + | chr5.1:25957688-25957707 | MS.gene027563:CDS | 40.0% | |
| CACCGAAATGATATAGCAAC+AGG | - | chr5.1:25958045-25958064 | None:intergenic | 40.0% | |
| CGCCTGTTGCTATATCATTT+CGG | + | chr5.1:25958040-25958059 | MS.gene027563:CDS | 40.0% | |
| CTAAAACGACCTACATTTGG+AGG | - | chr5.1:25957700-25957719 | None:intergenic | 40.0% | |
| CTGATATTAAGCAAAGGTGG+AGG | - | chr5.1:25958682-25958701 | None:intergenic | 40.0% | |
| CTGTCAGTATTGTGGGAATT+CGG | - | chr5.1:25957890-25957909 | None:intergenic | 40.0% | |
| GACACCATTTGGACTTACTT+CGG | + | chr5.1:25958458-25958477 | MS.gene027563:CDS | 40.0% | |
| GCCAACAAAAGACACATTCT+AGG | + | chr5.1:25959047-25959066 | MS.gene027563:intron | 40.0% | |
| GTGTTGTCAAATATCAGCCA+TGG | + | chr5.1:25957414-25957433 | MS.gene027563:intron | 40.0% | |
| GTTGAGCAAGTACAAGATTC+AGG | + | chr5.1:25957185-25957204 | MS.gene027563:intron | 40.0% | |
| TATGTCAGAGCGAACATTGT+TGG | - | chr5.1:25957331-25957350 | None:intergenic | 40.0% | |
| TGTGTGAAAGGCCAACTAAA+AGG | - | chr5.1:25957670-25957689 | None:intergenic | 40.0% | |
| ! | CTGCCGAAATACTTTTCCTT+GGG | + | chr5.1:25958493-25958512 | MS.gene027563:CDS | 40.0% |
| ! | GTCTTTTGTTGGCGATTTCA+TGG | - | chr5.1:25959040-25959059 | None:intergenic | 40.0% |
| ! | GTGGATTTTATGGCAGATTG+TGG | + | chr5.1:25957449-25957468 | MS.gene027563:intron | 40.0% |
| ! | TTATATTCTATTGGGGGCAC+AGG | + | chr5.1:25958293-25958312 | MS.gene027563:CDS | 40.0% |
| !! | CGTTTGTTGTACACTAAGTC+CGG | + | chr5.1:25958789-25958808 | MS.gene027563:CDS | 40.0% |
| !! | GTTTGTTGTACACTAAGTCC+GGG | + | chr5.1:25958790-25958809 | MS.gene027563:CDS | 40.0% |
| AAGAAGTTTGAGGGACTCCA+TGG | - | chr5.1:25958630-25958649 | None:intergenic | 45.0% | |
| ACCTTCTTGAGTCCCTTGTT+GGG | + | chr5.1:25958152-25958171 | MS.gene027563:intron | 45.0% | |
| AGAAGTTTGAGGGACTCCAT+GGG | - | chr5.1:25958629-25958648 | None:intergenic | 45.0% | |
| ATTGCGGTTACCATTTCCCA+TGG | + | chr5.1:25958610-25958629 | MS.gene027563:CDS | 45.0% | |
| ATTGGGTCCCTAAATGTGTG+AGG | - | chr5.1:25959117-25959136 | None:intergenic | 45.0% | |
| CAACAATGGTTGCAAACCCA+AGG | - | chr5.1:25958512-25958531 | None:intergenic | 45.0% | |
| CACGAAGGAAAGACACATTC+AGG | - | chr5.1:25958945-25958964 | None:intergenic | 45.0% | |
| CAGAGCGAACATTGTTGGAA+CGG | - | chr5.1:25957326-25957345 | None:intergenic | 45.0% | |
| CGAATTCCCACAATACTGAC+AGG | + | chr5.1:25957888-25957907 | MS.gene027563:intron | 45.0% | |
| CTTGGGTTTGCAACCATTGT+TGG | + | chr5.1:25958510-25958529 | MS.gene027563:CDS | 45.0% | |
| GACACCACCTCACACATTTA+GGG | + | chr5.1:25959107-25959126 | MS.gene027563:intron | 45.0% | |
| GAGAGTCTTAGAGACAGTTG+AGG | + | chr5.1:25958584-25958603 | MS.gene027563:CDS | 45.0% | |
| GCACAAGCCTCAAAATGAGA+AGG | - | chr5.1:25957842-25957861 | None:intergenic | 45.0% | |
| GCCCTCTCAATCCATACAAA+AGG | - | chr5.1:25957159-25957178 | None:intergenic | 45.0% | |
| GTGTCTTTCCTTCGTGAGTT+TGG | + | chr5.1:25958949-25958968 | MS.gene027563:intron | 45.0% | |
| TCCACAACCACAATTTGCCA+TGG | - | chr5.1:25957434-25957453 | None:intergenic | 45.0% | |
| TGACACCACCTCACACATTT+AGG | + | chr5.1:25959106-25959125 | MS.gene027563:intron | 45.0% | |
| TGATGCGGCTGCAATATTTG+TGG | + | chr5.1:25957738-25957757 | MS.gene027563:CDS | 45.0% | |
| TTCAAGGACCAAACTCACGA+AGG | - | chr5.1:25958960-25958979 | None:intergenic | 45.0% | |
| ! | CCTGCCGAAATACTTTTCCT+TGG | + | chr5.1:25958492-25958511 | MS.gene027563:CDS | 45.0% |
| ! | TGAAGGTATGCGACACCATT+TGG | + | chr5.1:25958447-25958466 | MS.gene027563:intron | 45.0% |
| ! | TTTGTATGGATTGAGAGGGC+AGG | + | chr5.1:25957159-25957178 | MS.gene027563:CDS | 45.0% |
| !! | AGAAGGTGAAAGTACCAGGA+TGG | - | chr5.1:25958139-25958158 | None:intergenic | 45.0% |
| !! | CCAAGGAAAAGTATTTCGGC+AGG | - | chr5.1:25958495-25958514 | None:intergenic | 45.0% |
| !! | CTCAAGAAGGTGAAAGTACC+AGG | - | chr5.1:25958143-25958162 | None:intergenic | 45.0% |
| !! | GGAGGGAAGTATTGTGTGAA+AGG | - | chr5.1:25957682-25957701 | None:intergenic | 45.0% |
| !! | GTGAAAGTACCAGGATGGTA+GGG | - | chr5.1:25958134-25958153 | None:intergenic | 45.0% |
| !! | TGAAAGTACCAGGATGGTAG+GGG | - | chr5.1:25958133-25958152 | None:intergenic | 45.0% |
| AACCACAGCAACATGCAGTG+TGG | - | chr5.1:25957776-25957795 | None:intergenic | 50.0% | |
| ACCCAACAAGGGACTCAAGA+AGG | - | chr5.1:25958156-25958175 | None:intergenic | 50.0% | |
| AGTGATGGCAGGACCAACAA+TGG | - | chr5.1:25958526-25958545 | None:intergenic | 50.0% | |
| ATCCACACTGCATGTTGCTG+TGG | + | chr5.1:25957771-25957790 | MS.gene027563:CDS | 50.0% | |
| ATTGTTGGTCCTGCCATCAC+TGG | + | chr5.1:25958525-25958544 | MS.gene027563:CDS | 50.0% | |
| CAACACTAAAGGCAGGGTCA+AGG | - | chr5.1:25957400-25957419 | None:intergenic | 50.0% | |
| CACCTTCTTGAGTCCCTTGT+TGG | + | chr5.1:25958151-25958170 | MS.gene027563:intron | 50.0% | |
| CCAGTTCACGTCACATGATG+CGG | + | chr5.1:25957723-25957742 | MS.gene027563:CDS | 50.0% | |
| CTCACTCGTGATGTACACTG+TGG | - | chr5.1:25958351-25958370 | None:intergenic | 50.0% | |
| GAGACAGTTGAGGCACATTG+CGG | + | chr5.1:25958594-25958613 | MS.gene027563:CDS | 50.0% | |
| GAGACTGACCCGCCATATAA+AGG | - | chr5.1:25958654-25958673 | None:intergenic | 50.0% | |
| GCCATGGCAAATTGTGGTTG+TGG | + | chr5.1:25957430-25957449 | MS.gene027563:intron | 50.0% | |
| GTAATCTTCCCCTACCATCC+TGG | + | chr5.1:25958122-25958141 | MS.gene027563:CDS | 50.0% | |
| TTGAGGGACTCCATGGGAAA+TGG | - | chr5.1:25958623-25958642 | None:intergenic | 50.0% | |
| TTGTTGGTCCTGCCATCACT+GGG | + | chr5.1:25958526-25958545 | MS.gene027563:CDS | 50.0% | |
| ! | GGCCCCACTTGATAACTTTG+TGG | + | chr5.1:25958547-25958566 | MS.gene027563:CDS | 50.0% |
| ! | TATGGATTGAGAGGGCAGGT+TGG | + | chr5.1:25957163-25957182 | MS.gene027563:intron | 50.0% |
| !! | GGTGAAAGTACCAGGATGGT+AGG | - | chr5.1:25958135-25958154 | None:intergenic | 50.0% |
| CCGCATCATGTGACGTGAAC+TGG | - | chr5.1:25957726-25957745 | None:intergenic | 55.0% | |
| GGGTCCCTAAATGTGTGAGG+TGG | - | chr5.1:25959114-25959133 | None:intergenic | 55.0% | |
| TATCAAGTGGGGCCCAGTGA+TGG | - | chr5.1:25958541-25958560 | None:intergenic | 55.0% | |
| AAGTGGGGCCCAGTGATGGC+AGG | - | chr5.1:25958537-25958556 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 25957127 | 25959332 | 25957127 | ID=MS.gene027563 |
| chr5.1 | mRNA | 25957127 | 25959332 | 25957127 | ID=MS.gene027563.t1;Parent=MS.gene027563 |
| chr5.1 | exon | 25957127 | 25957180 | 25957127 | ID=MS.gene027563.t1.exon1;Parent=MS.gene027563.t1 |
| chr5.1 | CDS | 25957127 | 25957180 | 25957127 | ID=cds.MS.gene027563.t1;Parent=MS.gene027563.t1 |
| chr5.1 | exon | 25957667 | 25957792 | 25957667 | ID=MS.gene027563.t1.exon2;Parent=MS.gene027563.t1 |
| chr5.1 | CDS | 25957667 | 25957792 | 25957667 | ID=cds.MS.gene027563.t1;Parent=MS.gene027563.t1 |
| chr5.1 | exon | 25957998 | 25958143 | 25957998 | ID=MS.gene027563.t1.exon3;Parent=MS.gene027563.t1 |
| chr5.1 | CDS | 25957998 | 25958143 | 25957998 | ID=cds.MS.gene027563.t1;Parent=MS.gene027563.t1 |
| chr5.1 | exon | 25958246 | 25958365 | 25958246 | ID=MS.gene027563.t1.exon4;Parent=MS.gene027563.t1 |
| chr5.1 | CDS | 25958246 | 25958365 | 25958246 | ID=cds.MS.gene027563.t1;Parent=MS.gene027563.t1 |
| chr5.1 | exon | 25958452 | 25958664 | 25958452 | ID=MS.gene027563.t1.exon5;Parent=MS.gene027563.t1 |
| chr5.1 | CDS | 25958452 | 25958664 | 25958452 | ID=cds.MS.gene027563.t1;Parent=MS.gene027563.t1 |
| chr5.1 | exon | 25958764 | 25958844 | 25958764 | ID=MS.gene027563.t1.exon6;Parent=MS.gene027563.t1 |
| chr5.1 | CDS | 25958764 | 25958844 | 25958764 | ID=cds.MS.gene027563.t1;Parent=MS.gene027563.t1 |
| chr5.1 | exon | 25959245 | 25959332 | 25959245 | ID=MS.gene027563.t1.exon7;Parent=MS.gene027563.t1 |
| chr5.1 | CDS | 25959245 | 25959332 | 25959245 | ID=cds.MS.gene027563.t1;Parent=MS.gene027563.t1 |
| Gene Sequence |
| Protein sequence |
