Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011582.t1 | XP_013457593.1 | 97.2 | 251 | 7 | 0 | 1 | 251 | 1 | 251 | 4.20E-145 | 523.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011582.t1 | O23547 | 59.6 | 240 | 94 | 3 | 12 | 250 | 12 | 249 | 1.0e-86 | 321.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011582.t1 | A0A072UP56 | 97.2 | 251 | 7 | 0 | 1 | 251 | 1 | 251 | 3.0e-145 | 523.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011582 | MS.gene28934 | PPI |
| MS.gene011582 | MS.gene003384 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011582.t1 | MTR_4g099370 | 97.211 | 251 | 7 | 0 | 1 | 251 | 1 | 251 | 0.0 | 509 |
| MS.gene011582.t1 | MTR_5g013440 | 72.112 | 251 | 70 | 0 | 1 | 251 | 2 | 252 | 7.43e-145 | 405 |
| MS.gene011582.t1 | MTR_4g099400 | 69.822 | 169 | 51 | 0 | 81 | 249 | 10 | 178 | 1.28e-86 | 255 |
| MS.gene011582.t1 | MTR_4g098930 | 41.434 | 251 | 139 | 2 | 9 | 251 | 3 | 253 | 3.77e-66 | 206 |
| MS.gene011582.t1 | MTR_4g075790 | 37.838 | 222 | 134 | 3 | 31 | 251 | 26 | 244 | 6.11e-52 | 170 |
| MS.gene011582.t1 | MTR_4g075790 | 37.059 | 170 | 106 | 1 | 81 | 250 | 9 | 177 | 2.62e-38 | 132 |
| MS.gene011582.t1 | MTR_0809s0010 | 32.090 | 268 | 154 | 8 | 1 | 244 | 1 | 264 | 1.46e-33 | 122 |
| MS.gene011582.t1 | MTR_4g028640 | 30.736 | 231 | 150 | 7 | 25 | 250 | 39 | 264 | 2.78e-28 | 108 |
| MS.gene011582.t1 | MTR_0118s0070 | 32.468 | 231 | 135 | 9 | 33 | 250 | 53 | 275 | 2.52e-27 | 106 |
| MS.gene011582.t1 | MTR_2g090270 | 27.444 | 266 | 167 | 9 | 5 | 251 | 1 | 259 | 1.41e-26 | 103 |
| MS.gene011582.t1 | MTR_2g090265 | 26.894 | 264 | 169 | 9 | 5 | 251 | 1 | 257 | 1.52e-26 | 103 |
| MS.gene011582.t1 | MTR_0122s0020 | 26.374 | 273 | 169 | 10 | 1 | 250 | 1 | 264 | 1.88e-23 | 95.9 |
| MS.gene011582.t1 | MTR_3g094040 | 28.112 | 249 | 156 | 10 | 11 | 244 | 8 | 248 | 9.57e-22 | 91.3 |
| MS.gene011582.t1 | MTR_4g099380 | 48.148 | 108 | 41 | 3 | 112 | 218 | 1 | 94 | 1.02e-20 | 89.0 |
| MS.gene011582.t1 | MTR_3g094060 | 28.700 | 223 | 144 | 8 | 30 | 244 | 33 | 248 | 1.62e-20 | 87.8 |
| MS.gene011582.t1 | MTR_7g013140 | 27.686 | 242 | 156 | 9 | 14 | 245 | 14 | 246 | 3.57e-20 | 86.7 |
| MS.gene011582.t1 | MTR_3g435430 | 27.197 | 239 | 159 | 8 | 17 | 247 | 14 | 245 | 5.02e-20 | 86.3 |
| MS.gene011582.t1 | MTR_7g111010 | 26.255 | 259 | 163 | 10 | 11 | 250 | 5 | 254 | 6.87e-20 | 86.3 |
| MS.gene011582.t1 | MTR_7g013120 | 27.686 | 242 | 158 | 8 | 14 | 245 | 14 | 248 | 1.84e-19 | 85.1 |
| MS.gene011582.t1 | MTR_7g011060 | 29.719 | 249 | 158 | 11 | 9 | 251 | 4 | 241 | 2.26e-19 | 84.3 |
| MS.gene011582.t1 | MTR_4g102450 | 28.405 | 257 | 162 | 9 | 9 | 251 | 14 | 262 | 2.87e-19 | 84.7 |
| MS.gene011582.t1 | MTR_3g466760 | 25.714 | 245 | 167 | 8 | 9 | 245 | 19 | 256 | 8.43e-19 | 83.2 |
| MS.gene011582.t1 | MTR_3g466790 | 25.714 | 245 | 167 | 8 | 9 | 245 | 13 | 250 | 1.24e-18 | 82.8 |
| MS.gene011582.t1 | MTR_7g013150 | 26.721 | 247 | 161 | 9 | 11 | 245 | 10 | 248 | 1.97e-18 | 82.0 |
| MS.gene011582.t1 | MTR_1g085460 | 25.506 | 247 | 165 | 8 | 16 | 250 | 18 | 257 | 3.21e-18 | 81.6 |
| MS.gene011582.t1 | MTR_4g081950 | 26.953 | 256 | 168 | 9 | 1 | 244 | 30 | 278 | 3.31e-18 | 82.0 |
| MS.gene011582.t1 | MTR_0122s0020 | 29.612 | 206 | 117 | 8 | 1 | 184 | 1 | 200 | 6.83e-18 | 79.7 |
| MS.gene011582.t1 | MTR_4g124340 | 30.172 | 232 | 136 | 11 | 27 | 244 | 60 | 279 | 8.10e-18 | 80.9 |
| MS.gene011582.t1 | MTR_5g075320 | 27.149 | 221 | 146 | 8 | 32 | 244 | 33 | 246 | 9.02e-18 | 80.5 |
| MS.gene011582.t1 | MTR_8g058990 | 26.613 | 248 | 164 | 9 | 8 | 245 | 9 | 248 | 1.37e-17 | 79.7 |
| MS.gene011582.t1 | MTR_7g110990 | 27.004 | 237 | 150 | 9 | 28 | 250 | 12 | 239 | 2.21e-17 | 79.0 |
| MS.gene011582.t1 | MTR_8g464350 | 26.991 | 226 | 148 | 8 | 30 | 246 | 33 | 250 | 3.67e-17 | 78.6 |
| MS.gene011582.t1 | MTR_5g041700 | 28.000 | 225 | 147 | 8 | 28 | 244 | 25 | 242 | 2.26e-16 | 76.3 |
| MS.gene011582.t1 | MTR_7g061720 | 26.407 | 231 | 153 | 9 | 24 | 244 | 28 | 251 | 1.26e-15 | 74.7 |
| MS.gene011582.t1 | MTR_5g011210 | 25.106 | 235 | 161 | 5 | 26 | 251 | 35 | 263 | 8.91e-15 | 72.4 |
| MS.gene011582.t1 | MTR_1g026020 | 22.530 | 253 | 176 | 10 | 9 | 250 | 12 | 255 | 3.48e-13 | 67.8 |
| MS.gene011582.t1 | MTR_4g063975 | 27.128 | 188 | 120 | 8 | 24 | 200 | 28 | 209 | 2.56e-12 | 65.1 |
| MS.gene011582.t1 | MTR_6g012520 | 27.347 | 245 | 160 | 10 | 8 | 244 | 3 | 237 | 4.54e-12 | 64.3 |
| MS.gene011582.t1 | MTR_2g090255 | 26.984 | 252 | 162 | 10 | 9 | 245 | 4 | 248 | 1.11e-11 | 63.5 |
| MS.gene011582.t1 | MTR_0040s0140 | 25.203 | 246 | 166 | 9 | 11 | 245 | 14 | 252 | 4.42e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011582.t1 | AT4G17030 | 59.259 | 243 | 96 | 3 | 9 | 250 | 9 | 249 | 2.06e-108 | 313 |
| MS.gene011582.t1 | AT3G45970 | 36.058 | 208 | 130 | 3 | 47 | 251 | 15 | 222 | 2.97e-44 | 149 |
| MS.gene011582.t1 | AT4G38400 | 38.095 | 189 | 116 | 1 | 64 | 251 | 61 | 249 | 1.44e-43 | 148 |
| MS.gene011582.t1 | AT3G45960 | 35.450 | 189 | 121 | 1 | 64 | 251 | 12 | 200 | 1.54e-41 | 142 |
| MS.gene011582.t1 | AT3G45970 | 36.842 | 190 | 118 | 2 | 64 | 251 | 60 | 249 | 1.56e-41 | 143 |
| MS.gene011582.t1 | AT3G45960 | 35.450 | 189 | 121 | 1 | 64 | 251 | 60 | 248 | 5.07e-41 | 142 |
| MS.gene011582.t1 | AT1G65680 | 33.750 | 240 | 139 | 9 | 23 | 250 | 42 | 273 | 8.43e-31 | 115 |
| MS.gene011582.t1 | AT4G28250 | 29.259 | 270 | 163 | 11 | 1 | 251 | 1 | 261 | 1.32e-27 | 107 |
| MS.gene011582.t1 | AT2G40610 | 29.032 | 248 | 162 | 7 | 5 | 244 | 7 | 248 | 1.46e-24 | 98.6 |
| MS.gene011582.t1 | AT4G28250 | 28.519 | 270 | 159 | 12 | 1 | 251 | 1 | 255 | 1.30e-23 | 96.3 |
| MS.gene011582.t1 | AT2G20750 | 26.740 | 273 | 173 | 10 | 1 | 251 | 1 | 268 | 1.53e-23 | 96.3 |
| MS.gene011582.t1 | AT2G45110 | 28.137 | 263 | 163 | 9 | 6 | 250 | 5 | 259 | 1.28e-21 | 90.9 |
| MS.gene011582.t1 | AT1G65681 | 29.302 | 215 | 140 | 6 | 43 | 250 | 13 | 222 | 3.87e-21 | 89.0 |
| MS.gene011582.t1 | AT5G39290 | 27.391 | 230 | 148 | 9 | 30 | 250 | 60 | 279 | 5.63e-20 | 87.0 |
| MS.gene011582.t1 | AT4G01630 | 24.904 | 261 | 179 | 8 | 1 | 250 | 1 | 255 | 1.21e-19 | 85.5 |
| MS.gene011582.t1 | AT5G56320 | 27.668 | 253 | 167 | 9 | 1 | 244 | 1 | 246 | 3.88e-19 | 84.3 |
| MS.gene011582.t1 | AT5G56320 | 27.668 | 253 | 167 | 9 | 1 | 244 | 1 | 246 | 3.88e-19 | 84.3 |
| MS.gene011582.t1 | AT2G03090 | 27.049 | 244 | 163 | 8 | 9 | 244 | 11 | 247 | 3.95e-19 | 84.0 |
| MS.gene011582.t1 | AT3G60570 | 27.309 | 249 | 156 | 10 | 15 | 250 | 21 | 257 | 6.25e-19 | 84.0 |
| MS.gene011582.t1 | AT5G39270 | 26.957 | 230 | 149 | 9 | 30 | 250 | 60 | 279 | 8.90e-19 | 83.6 |
| MS.gene011582.t1 | AT5G56320 | 27.668 | 253 | 167 | 9 | 1 | 244 | 1 | 246 | 1.12e-18 | 83.6 |
| MS.gene011582.t1 | AT5G05290 | 27.477 | 222 | 147 | 7 | 32 | 245 | 36 | 251 | 1.72e-18 | 82.4 |
| MS.gene011582.t1 | AT4G28250 | 32.683 | 205 | 107 | 10 | 1 | 187 | 1 | 192 | 4.68e-18 | 80.5 |
| MS.gene011582.t1 | AT4G28250 | 32.843 | 204 | 106 | 10 | 1 | 186 | 1 | 191 | 9.09e-18 | 79.3 |
| MS.gene011582.t1 | AT5G39310 | 26.180 | 233 | 158 | 8 | 25 | 250 | 87 | 312 | 5.33e-17 | 79.3 |
| MS.gene011582.t1 | AT2G20750 | 29.703 | 202 | 113 | 8 | 9 | 186 | 8 | 204 | 6.18e-17 | 77.4 |
| MS.gene011582.t1 | AT5G39280 | 26.087 | 230 | 157 | 8 | 27 | 250 | 53 | 275 | 7.99e-17 | 78.2 |
| MS.gene011582.t1 | AT2G39700 | 26.407 | 231 | 153 | 8 | 24 | 244 | 27 | 250 | 9.56e-17 | 77.8 |
| MS.gene011582.t1 | AT5G39300 | 26.087 | 230 | 157 | 8 | 27 | 250 | 54 | 276 | 1.31e-16 | 77.4 |
| MS.gene011582.t1 | AT1G26770 | 25.403 | 248 | 167 | 9 | 8 | 244 | 3 | 243 | 6.01e-16 | 75.5 |
| MS.gene011582.t1 | AT1G26770 | 25.403 | 248 | 167 | 9 | 8 | 244 | 13 | 253 | 7.40e-16 | 75.1 |
| MS.gene011582.t1 | AT5G02260 | 27.632 | 228 | 148 | 8 | 28 | 245 | 32 | 252 | 1.20e-15 | 74.7 |
| MS.gene011582.t1 | AT1G12560 | 23.810 | 231 | 156 | 6 | 31 | 250 | 40 | 261 | 1.24e-15 | 74.7 |
| MS.gene011582.t1 | AT3G29030 | 29.680 | 219 | 144 | 8 | 28 | 244 | 38 | 248 | 2.11e-15 | 73.9 |
| MS.gene011582.t1 | AT1G69530 | 26.407 | 231 | 154 | 9 | 28 | 250 | 27 | 249 | 8.08e-15 | 72.4 |
| MS.gene011582.t1 | AT1G69530 | 26.407 | 231 | 154 | 9 | 28 | 250 | 27 | 249 | 8.08e-15 | 72.4 |
| MS.gene011582.t1 | AT1G69530 | 25.778 | 225 | 152 | 8 | 28 | 244 | 27 | 244 | 1.36e-14 | 72.0 |
| MS.gene011582.t1 | AT2G37640 | 26.383 | 235 | 150 | 10 | 24 | 245 | 32 | 256 | 1.81e-14 | 71.2 |
| MS.gene011582.t1 | AT1G69530 | 27.072 | 181 | 119 | 6 | 28 | 200 | 27 | 202 | 7.49e-14 | 68.9 |
| MS.gene011582.t1 | AT1G69530 | 27.072 | 181 | 119 | 6 | 28 | 200 | 27 | 202 | 1.12e-13 | 68.9 |
| MS.gene011582.t1 | AT3G15370 | 25.681 | 257 | 152 | 10 | 11 | 246 | 8 | 246 | 5.34e-12 | 64.3 |
Find 65 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCCACTGAGGAGGGTTTA+TGG | 0.247415 | 8.4:-23622190 | MS.gene011582:CDS |
| TCCACGAGGCTACGCGAAAT+TGG | 0.256911 | 8.4:-23622758 | MS.gene011582:CDS |
| GCTTGTGGCTTTGGAGAATA+TGG | 0.263125 | 8.4:-23623076 | MS.gene011582:CDS |
| CCACAATACTGCGATGAAAA+TGG | 0.266801 | 8.4:-23622838 | MS.gene011582:CDS |
| TCCTCAGTGGCCTCCATTCT+TGG | 0.275497 | 8.4:+23622200 | None:intergenic |
| GTGGAAATGCAGGTGTTTAT+TGG | 0.317224 | 8.4:-23622108 | MS.gene011582:CDS |
| ATCACTAGGGATAGCATTCT+TGG | 0.323642 | 8.4:+23622078 | None:intergenic |
| TGGCTGCGGTGCATGCTATC+AGG | 0.344368 | 8.4:-23622996 | MS.gene011582:intron |
| CTTGGAGTCCCATAGCAATC+TGG | 0.347216 | 8.4:+23623574 | None:intergenic |
| ACCACAACAGCAAAGTAATA+AGG | 0.362326 | 8.4:+23622610 | None:intergenic |
| TCTGCAGAGCTATTCAAATA+TGG | 0.394107 | 8.4:-23622718 | MS.gene011582:CDS |
| TCCTTATTACTTTGCTGTTG+TGG | 0.402642 | 8.4:-23622611 | MS.gene011582:CDS |
| CTCAAGTTTATTTCACCACT+TGG | 0.406130 | 8.4:+23622142 | None:intergenic |
| TGGAAATGCAGGTGTTTATT+GGG | 0.410965 | 8.4:-23622107 | MS.gene011582:CDS |
| TATTTCACCACTTGGAGGAT+TGG | 0.431234 | 8.4:+23622150 | None:intergenic |
| ATCCCTAGTGATTGGAAGGC+TGG | 0.435906 | 8.4:-23622067 | MS.gene011582:CDS |
| CCACGAGGCTACGCGAAATT+GGG | 0.444079 | 8.4:-23622757 | MS.gene011582:CDS |
| GTGAATGATGGCAATGTTGC+TGG | 0.447595 | 8.4:-23623046 | MS.gene011582:CDS |
| GACTCCAGAGCAACATATTA+CGG | 0.456356 | 8.4:-23623601 | MS.gene011582:CDS |
| TGGAAGAATGGCACTGGCTG+CGG | 0.456676 | 8.4:-23623010 | MS.gene011582:CDS |
| CACCTGCATTTCCACTCACT+TGG | 0.460702 | 8.4:+23622116 | None:intergenic |
| TGCAGGAAGATTGCCAAGAA+TGG | 0.461897 | 8.4:-23622213 | MS.gene011582:intron |
| GTTGTGGTTCTCTATGTAGA+TGG | 0.464390 | 8.4:-23622595 | MS.gene011582:CDS |
| TGGAGCTGCATATGACACTA+TGG | 0.473430 | 8.4:-23622047 | MS.gene011582:CDS |
| AGAATGCTATCCCTAGTGAT+TGG | 0.481085 | 8.4:-23622075 | MS.gene011582:CDS |
| ACCGTAGTGGTAACAGACTA+TGG | 0.499521 | 8.4:-23622811 | MS.gene011582:CDS |
| TTGGAGTCCCATAGCAATCT+GGG | 0.508697 | 8.4:+23623575 | None:intergenic |
| AAGTTTATTTCACCACTTGG+AGG | 0.511098 | 8.4:+23622145 | None:intergenic |
| CCCAATTTCGCGTAGCCTCG+TGG | 0.523724 | 8.4:+23622757 | None:intergenic |
| TTCCAAGTGAGTGGAAATGC+AGG | 0.526709 | 8.4:-23622118 | MS.gene011582:CDS |
| TACGGTAGCCCAGATTGCTA+TGG | 0.539732 | 8.4:-23623583 | MS.gene011582:CDS |
| TGTTGCTCTGGAGTCAGTAA+AGG | 0.544094 | 8.4:+23623609 | None:intergenic |
| TTATACCCACTGTACATACA+TGG | 0.546452 | 8.4:+23622667 | None:intergenic |
| TGCTATCCCTAGTGATTGGA+AGG | 0.547215 | 8.4:-23622071 | MS.gene011582:CDS |
| GCTACCGTAATATGTTGCTC+TGG | 0.555933 | 8.4:+23623597 | None:intergenic |
| TATGGAAGGACAGTGAATGA+TGG | 0.566479 | 8.4:-23623058 | MS.gene011582:CDS |
| TGATACAAACAAGGCCAAGA+TGG | 0.569027 | 8.4:+23623668 | None:intergenic |
| AGAATGGAGGCCACTGAGGA+GGG | 0.569852 | 8.4:-23622197 | MS.gene011582:CDS |
| ACCATAGTCTGTTACCACTA+CGG | 0.574425 | 8.4:+23622810 | None:intergenic |
| TTGCTGGTGTGTCTAAGCTA+TGG | 0.574596 | 8.4:-23623030 | MS.gene011582:CDS |
| AAGCTATGGAAGAATGGCAC+TGG | 0.579404 | 8.4:-23623016 | MS.gene011582:CDS |
| GCTCCAGCCTTCCAATCACT+AGG | 0.580531 | 8.4:+23622064 | None:intergenic |
| GAGTCCCATGTATGTACAGT+GGG | 0.582113 | 8.4:-23622672 | MS.gene011582:CDS |
| AAGAATGGAGGCCACTGAGG+AGG | 0.587098 | 8.4:-23622198 | MS.gene011582:CDS |
| GTGTCTAAGCTATGGAAGAA+TGG | 0.587930 | 8.4:-23623022 | MS.gene011582:CDS |
| ACGGTAGCCCAGATTGCTAT+GGG | 0.590086 | 8.4:-23623582 | MS.gene011582:CDS |
| AACTTGAGGTTCCAAGTGAG+TGG | 0.592662 | 8.4:-23622127 | MS.gene011582:CDS |
| GTGGCTTTGGAGAATATGGA+AGG | 0.602436 | 8.4:-23623072 | MS.gene011582:CDS |
| GACTATGCCAATCCTCCAAG+TGG | 0.622471 | 8.4:-23622157 | MS.gene011582:CDS |
| CTCCAGCCTTCCAATCACTA+GGG | 0.624095 | 8.4:+23622065 | None:intergenic |
| GTGGTAACAGACTATGGTGA+AGG | 0.629740 | 8.4:-23622805 | MS.gene011582:CDS |
| CAATGCTGTTGAGATGTGGC+AGG | 0.636272 | 8.4:-23622560 | MS.gene011582:intron |
| AGGAAGATTGCCAAGAATGG+AGG | 0.637762 | 8.4:-23622210 | MS.gene011582:CDS |
| TATACCCACTGTACATACAT+GGG | 0.650693 | 8.4:+23622668 | None:intergenic |
| GCCAAGAATGGAGGCCACTG+AGG | 0.654040 | 8.4:-23622201 | MS.gene011582:CDS |
| GTCAGTAAAGGAGTCTTGTG+AGG | 0.658578 | 8.4:+23623621 | None:intergenic |
| AGAGTCCCATGTATGTACAG+TGG | 0.670183 | 8.4:-23622673 | MS.gene011582:CDS |
| TGAAAATGGAGCAACCGTAG+TGG | 0.671092 | 8.4:-23622824 | MS.gene011582:CDS |
| TCTTGTGAGGTACATAGCTG+AGG | 0.675312 | 8.4:+23623634 | None:intergenic |
| ATGTCAATGCTGTTGAGATG+TGG | 0.679068 | 8.4:-23622564 | MS.gene011582:CDS |
| GTACAGTGGGTATAACATAG+TGG | 0.682701 | 8.4:-23622659 | MS.gene011582:CDS |
| CAAGTGGTGAAATAAACTTG+AGG | 0.692736 | 8.4:-23622141 | MS.gene011582:CDS |
| ACTCCATAAACCCTCCTCAG+TGG | 0.707415 | 8.4:+23622187 | None:intergenic |
| AGAGCAGTATGATACAAACA+AGG | 0.723610 | 8.4:+23623659 | None:intergenic |
| GACTTCATAATGAGTCCACG+AGG | 0.774042 | 8.4:-23622772 | MS.gene011582:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAATAAATAAAAA+AGG | - | chr8.4:23622321-23622340 | MS.gene011582:intron | 0.0% |
| !! | AGTAAATTTACTATTATTAA+TGG | + | chr8.4:23622814-23622833 | None:intergenic | 10.0% |
| !!! | TAAATATTTTGTTACAATTA+TGG | + | chr8.4:23622761-23622780 | None:intergenic | 10.0% |
| !! | AATTGAAATATATACTTTAG+GGG | - | chr8.4:23622620-23622639 | MS.gene011582:CDS | 15.0% |
| !! | GAATTGAAATATATACTTTA+GGG | - | chr8.4:23622619-23622638 | MS.gene011582:CDS | 15.0% |
| !! | GTAAATTTACTAACTATAAA+TGG | - | chr8.4:23622823-23622842 | MS.gene011582:CDS | 15.0% |
| !! | TGAATTGAAATATATACTTT+AGG | - | chr8.4:23622618-23622637 | MS.gene011582:CDS | 15.0% |
| !!! | AGAAATTAAATATCTAGTTT+AGG | + | chr8.4:23622191-23622210 | None:intergenic | 15.0% |
| !! | AAATTATGCTTATTAATCGT+TGG | - | chr8.4:23622366-23622385 | MS.gene011582:intron | 20.0% |
| !! | ATTGAAATATATACTTTAGG+GGG | - | chr8.4:23622621-23622640 | MS.gene011582:CDS | 20.0% |
| !! | CTATATACATTGCATTTAAT+TGG | - | chr8.4:23623198-23623217 | MS.gene011582:intron | 20.0% |
| !!! | ACACATTTTTATGTTACATT+CGG | - | chr8.4:23623235-23623254 | MS.gene011582:intron | 20.0% |
| !!! | TTTTTTTTGGTCAAGATTTT+TGG | - | chr8.4:23622393-23622412 | MS.gene011582:intron | 20.0% |
| ! | ATATGACAGATATTATGAGA+CGG | - | chr8.4:23622567-23622586 | MS.gene011582:CDS | 25.0% |
| ! | ATGTGTAAAATTGTCAAATG+CGG | + | chr8.4:23622297-23622316 | None:intergenic | 25.0% |
| ! | TGATGACTAATTGATTAATC+AGG | - | chr8.4:23622846-23622865 | MS.gene011582:CDS | 25.0% |
| !! | CACATTTTTATGTTACATTC+GGG | - | chr8.4:23623236-23623255 | MS.gene011582:intron | 25.0% |
| !!! | AATCGTTGGTGTTTTTTTTT+TGG | - | chr8.4:23622380-23622399 | MS.gene011582:intron | 25.0% |
| !!! | GAAATGTTTTTTGTTGTGAA+TGG | - | chr8.4:23623483-23623502 | MS.gene011582:intron | 25.0% |
| ACTAATTGATTAATCAGGTG+AGG | - | chr8.4:23622851-23622870 | MS.gene011582:CDS | 30.0% | |
| CATTTAACCAGTTTGATCAT+CGG | + | chr8.4:23623349-23623368 | None:intergenic | 30.0% | |
| ! | ATATCTAGTTTAGGTAGAAG+AGG | + | chr8.4:23622182-23622201 | None:intergenic | 30.0% |
| !!! | CTAGCAAAGTGAACATTTTT+TGG | + | chr8.4:23622253-23622272 | None:intergenic | 30.0% |
| AAGTTTATTTCACCACTTGG+AGG | + | chr8.4:23623579-23623598 | None:intergenic | 35.0% | |
| ACCACAACAGCAAAGTAATA+AGG | + | chr8.4:23623114-23623133 | None:intergenic | 35.0% | |
| AGAGCAGTATGATACAAACA+AGG | + | chr8.4:23622065-23622084 | None:intergenic | 35.0% | |
| ATGCATGCGATACTAATTCA+AGG | - | chr8.4:23622468-23622487 | MS.gene011582:intron | 35.0% | |
| CAAGTGGTGAAATAAACTTG+AGG | - | chr8.4:23623580-23623599 | MS.gene011582:CDS | 35.0% | |
| CAATCAATTGAACCATGATC+CGG | + | chr8.4:23623373-23623392 | None:intergenic | 35.0% | |
| CTCAAGTTTATTTCACCACT+TGG | + | chr8.4:23623582-23623601 | None:intergenic | 35.0% | |
| GATCAAACTGGTTAAATGTC+CGG | - | chr8.4:23623351-23623370 | MS.gene011582:intron | 35.0% | |
| TATACCCACTGTACATACAT+GGG | + | chr8.4:23623056-23623075 | None:intergenic | 35.0% | |
| TCTGCAGAGCTATTCAAATA+TGG | - | chr8.4:23623003-23623022 | MS.gene011582:CDS | 35.0% | |
| TGCATGCGATACTAATTCAA+GGG | - | chr8.4:23622469-23622488 | MS.gene011582:intron | 35.0% | |
| TGGAAATGCAGGTGTTTATT+GGG | - | chr8.4:23623614-23623633 | MS.gene011582:CDS | 35.0% | |
| TTATACCCACTGTACATACA+TGG | + | chr8.4:23623057-23623076 | None:intergenic | 35.0% | |
| TTTGAATTGATAGACCAACG+CGG | - | chr8.4:23623415-23623434 | MS.gene011582:intron | 35.0% | |
| !! | AAGGATTTTTGCTGTGTTCA+TGG | + | chr8.4:23623095-23623114 | None:intergenic | 35.0% |
| !! | TCCTTATTACTTTGCTGTTG+TGG | - | chr8.4:23623110-23623129 | MS.gene011582:intron | 35.0% |
| AATCAGACCGATGATCAAAC+TGG | - | chr8.4:23623339-23623358 | MS.gene011582:intron | 40.0% | |
| ACCATAGTCTGTTACCACTA+CGG | + | chr8.4:23622914-23622933 | None:intergenic | 40.0% | |
| AGAATGCTATCCCTAGTGAT+TGG | - | chr8.4:23623646-23623665 | MS.gene011582:CDS | 40.0% | |
| ATCACTAGGGATAGCATTCT+TGG | + | chr8.4:23623646-23623665 | None:intergenic | 40.0% | |
| ATGTCAATGCTGTTGAGATG+TGG | - | chr8.4:23623157-23623176 | MS.gene011582:intron | 40.0% | |
| CCACAATACTGCGATGAAAA+TGG | - | chr8.4:23622883-23622902 | MS.gene011582:intron | 40.0% | |
| CGGTTCAACTTGGTATGATT+TGG | - | chr8.4:23623435-23623454 | MS.gene011582:intron | 40.0% | |
| GACTCCAGAGCAACATATTA+CGG | - | chr8.4:23622120-23622139 | MS.gene011582:CDS | 40.0% | |
| GTACAGTGGGTATAACATAG+TGG | - | chr8.4:23623062-23623081 | MS.gene011582:CDS | 40.0% | |
| GTGGAAATGCAGGTGTTTAT+TGG | - | chr8.4:23623613-23623632 | MS.gene011582:CDS | 40.0% | |
| GTGTCTAAGCTATGGAAGAA+TGG | - | chr8.4:23622699-23622718 | MS.gene011582:CDS | 40.0% | |
| GTTGTGGTTCTCTATGTAGA+TGG | - | chr8.4:23623126-23623145 | MS.gene011582:intron | 40.0% | |
| TAGAAGAGGAGGATCATACT+TGG | + | chr8.4:23622168-23622187 | None:intergenic | 40.0% | |
| TATGGAAGGACAGTGAATGA+TGG | - | chr8.4:23622663-23622682 | MS.gene011582:CDS | 40.0% | |
| TATTTCACCACTTGGAGGAT+TGG | + | chr8.4:23623574-23623593 | None:intergenic | 40.0% | |
| TGATACAAACAAGGCCAAGA+TGG | + | chr8.4:23622056-23622075 | None:intergenic | 40.0% | |
| ! | CCATTTTCATCGCAGTATTG+TGG | + | chr8.4:23622886-23622905 | None:intergenic | 40.0% |
| ! | TCTAGTTTAGGTAGAAGAGG+AGG | + | chr8.4:23622179-23622198 | None:intergenic | 40.0% |
| !! | CTCACTTTTAAGCACCATCT+TGG | - | chr8.4:23622039-23622058 | MS.gene011582:CDS | 40.0% |
| !! | TTTTGTTGTGAATGGTGTGC+AGG | - | chr8.4:23623491-23623510 | MS.gene011582:intron | 40.0% |
| AACTTGAGGTTCCAAGTGAG+TGG | - | chr8.4:23623594-23623613 | MS.gene011582:CDS | 45.0% | |
| AAGCTATGGAAGAATGGCAC+TGG | - | chr8.4:23622705-23622724 | MS.gene011582:CDS | 45.0% | |
| ACCGTAGTGGTAACAGACTA+TGG | - | chr8.4:23622910-23622929 | MS.gene011582:intron | 45.0% | |
| AGAGTCCCATGTATGTACAG+TGG | - | chr8.4:23623048-23623067 | MS.gene011582:CDS | 45.0% | |
| AGGAAGATTGCCAAGAATGG+AGG | - | chr8.4:23623511-23623530 | MS.gene011582:intron | 45.0% | |
| CTGGTTAAATGTCCGGATCA+TGG | - | chr8.4:23623358-23623377 | MS.gene011582:intron | 45.0% | |
| GACTTCATAATGAGTCCACG+AGG | - | chr8.4:23622949-23622968 | MS.gene011582:intron | 45.0% | |
| GAGTCCCATGTATGTACAGT+GGG | - | chr8.4:23623049-23623068 | MS.gene011582:CDS | 45.0% | |
| GCTACCGTAATATGTTGCTC+TGG | + | chr8.4:23622127-23622146 | None:intergenic | 45.0% | |
| GTGAATGATGGCAATGTTGC+TGG | - | chr8.4:23622675-23622694 | MS.gene011582:CDS | 45.0% | |
| GTGGTAACAGACTATGGTGA+AGG | - | chr8.4:23622916-23622935 | MS.gene011582:intron | 45.0% | |
| TCTTGTGAGGTACATAGCTG+AGG | + | chr8.4:23622090-23622109 | None:intergenic | 45.0% | |
| TGAAAATGGAGCAACCGTAG+TGG | - | chr8.4:23622897-23622916 | MS.gene011582:intron | 45.0% | |
| TGCAGGAAGATTGCCAAGAA+TGG | - | chr8.4:23623508-23623527 | MS.gene011582:intron | 45.0% | |
| TGCTATCCCTAGTGATTGGA+AGG | - | chr8.4:23623650-23623669 | MS.gene011582:CDS | 45.0% | |
| TGGAGCTGCATATGACACTA+TGG | - | chr8.4:23623674-23623693 | MS.gene011582:CDS | 45.0% | |
| TTCCAAGTGAGTGGAAATGC+AGG | - | chr8.4:23623603-23623622 | MS.gene011582:CDS | 45.0% | |
| TTGCTGGTGTGTCTAAGCTA+TGG | - | chr8.4:23622691-23622710 | MS.gene011582:CDS | 45.0% | |
| TTGGAGTCCCATAGCAATCT+GGG | + | chr8.4:23622149-23622168 | None:intergenic | 45.0% | |
| ! | GTCAGTAAAGGAGTCTTGTG+AGG | + | chr8.4:23622103-23622122 | None:intergenic | 45.0% |
| ! | TATACTTTAGGGGGAGCTTG+TGG | - | chr8.4:23622630-23622649 | MS.gene011582:CDS | 45.0% |
| !! | GCTTGTGGCTTTGGAGAATA+TGG | - | chr8.4:23622645-23622664 | MS.gene011582:CDS | 45.0% |
| !! | GTGGCTTTGGAGAATATGGA+AGG | - | chr8.4:23622649-23622668 | MS.gene011582:CDS | 45.0% |
| !! | TGTTGCTCTGGAGTCAGTAA+AGG | + | chr8.4:23622115-23622134 | None:intergenic | 45.0% |
| ACGGTAGCCCAGATTGCTAT+GGG | - | chr8.4:23622139-23622158 | MS.gene011582:CDS | 50.0% | |
| ACTCCATAAACCCTCCTCAG+TGG | + | chr8.4:23623537-23623556 | None:intergenic | 50.0% | |
| ATCCCTAGTGATTGGAAGGC+TGG | - | chr8.4:23623654-23623673 | MS.gene011582:CDS | 50.0% | |
| CAATGCTGTTGAGATGTGGC+AGG | - | chr8.4:23623161-23623180 | MS.gene011582:intron | 50.0% | |
| CACCTGCATTTCCACTCACT+TGG | + | chr8.4:23623608-23623627 | None:intergenic | 50.0% | |
| CTCCAGCCTTCCAATCACTA+GGG | + | chr8.4:23623659-23623678 | None:intergenic | 50.0% | |
| CTTGGAGTCCCATAGCAATC+TGG | + | chr8.4:23622150-23622169 | None:intergenic | 50.0% | |
| GACTATGCCAATCCTCCAAG+TGG | - | chr8.4:23623564-23623583 | MS.gene011582:intron | 50.0% | |
| TACGGTAGCCCAGATTGCTA+TGG | - | chr8.4:23622138-23622157 | MS.gene011582:CDS | 50.0% | |
| TAGACCAACGCGGTTCAACT+TGG | - | chr8.4:23623425-23623444 | MS.gene011582:intron | 50.0% | |
| ! | CATACCAAGTTGAACCGCGT+TGG | + | chr8.4:23623432-23623451 | None:intergenic | 50.0% |
| AAGAATGGAGGCCACTGAGG+AGG | - | chr8.4:23623523-23623542 | MS.gene011582:intron | 55.0% | |
| AGAATGGAGGCCACTGAGGA+GGG | - | chr8.4:23623524-23623543 | MS.gene011582:intron | 55.0% | |
| AGGCCACTGAGGAGGGTTTA+TGG | - | chr8.4:23623531-23623550 | MS.gene011582:intron | 55.0% | |
| CCACGAGGCTACGCGAAATT+GGG | - | chr8.4:23622964-23622983 | MS.gene011582:intron | 55.0% | |
| GCTCCAGCCTTCCAATCACT+AGG | + | chr8.4:23623660-23623679 | None:intergenic | 55.0% | |
| TCCACGAGGCTACGCGAAAT+TGG | - | chr8.4:23622963-23622982 | MS.gene011582:intron | 55.0% | |
| TCCTCAGTGGCCTCCATTCT+TGG | + | chr8.4:23623524-23623543 | None:intergenic | 55.0% | |
| TTAGGGGGAGCTTGTGGCTT+TGG | - | chr8.4:23622636-23622655 | MS.gene011582:CDS | 55.0% | |
| !! | TGGAAGAATGGCACTGGCTG+CGG | - | chr8.4:23622711-23622730 | MS.gene011582:CDS | 55.0% |
| CCCAATTTCGCGTAGCCTCG+TGG | + | chr8.4:23622967-23622986 | None:intergenic | 60.0% | |
| GCCAAGAATGGAGGCCACTG+AGG | - | chr8.4:23623520-23623539 | MS.gene011582:intron | 60.0% | |
| TGGCTGCGGTGCATGCTATC+AGG | - | chr8.4:23622725-23622744 | MS.gene011582:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 23622033 | 23623710 | 23622033 | ID=MS.gene011582 |
| chr8.4 | mRNA | 23622033 | 23623710 | 23622033 | ID=MS.gene011582.t1;Parent=MS.gene011582 |
| chr8.4 | exon | 23623575 | 23623710 | 23623575 | ID=MS.gene011582.t1.exon1;Parent=MS.gene011582.t1 |
| chr8.4 | CDS | 23623575 | 23623710 | 23623575 | ID=cds.MS.gene011582.t1;Parent=MS.gene011582.t1 |
| chr8.4 | exon | 23622997 | 23623103 | 23622997 | ID=MS.gene011582.t1.exon2;Parent=MS.gene011582.t1 |
| chr8.4 | CDS | 23622997 | 23623103 | 23622997 | ID=cds.MS.gene011582.t1;Parent=MS.gene011582.t1 |
| chr8.4 | exon | 23622561 | 23622875 | 23622561 | ID=MS.gene011582.t1.exon3;Parent=MS.gene011582.t1 |
| chr8.4 | CDS | 23622561 | 23622875 | 23622561 | ID=cds.MS.gene011582.t1;Parent=MS.gene011582.t1 |
| chr8.4 | exon | 23622033 | 23622230 | 23622033 | ID=MS.gene011582.t1.exon4;Parent=MS.gene011582.t1 |
| chr8.4 | CDS | 23622033 | 23622230 | 23622033 | ID=cds.MS.gene011582.t1;Parent=MS.gene011582.t1 |
| Gene Sequence |
| Protein sequence |
