Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003384.t1 | XP_013456587.1 | 96.2 | 260 | 10 | 0 | 1 | 260 | 1 | 260 | 3.80E-141 | 510.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003384.t1 | Q9SVE5 | 64.4 | 247 | 86 | 1 | 16 | 260 | 19 | 265 | 3.9e-94 | 345.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003384.t1 | I3SMJ2 | 96.2 | 260 | 10 | 0 | 1 | 260 | 1 | 260 | 2.8e-141 | 510.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003384 | MS.gene29929 | PPI |
| MS.gene003384 | MS.gene21522 | PPI |
| MS.gene021859 | MS.gene003384 | PPI |
| MS.gene003384 | MS.gene057481 | PPI |
| MS.gene021857 | MS.gene003384 | PPI |
| MS.gene003384 | MS.gene28934 | PPI |
| MS.gene071212 | MS.gene003384 | PPI |
| MS.gene057479 | MS.gene003384 | PPI |
| MS.gene071213 | MS.gene003384 | PPI |
| MS.gene003384 | MS.gene97204 | PPI |
| MS.gene91660 | MS.gene003384 | PPI |
| MS.gene72362 | MS.gene003384 | PPI |
| MS.gene97207 | MS.gene003384 | PPI |
| MS.gene61273 | MS.gene003384 | PPI |
| MS.gene09712 | MS.gene003384 | PPI |
| MS.gene070610 | MS.gene003384 | PPI |
| MS.gene011582 | MS.gene003384 | PPI |
| MS.gene54620 | MS.gene003384 | PPI |
| MS.gene046098 | MS.gene003384 | PPI |
| MS.gene003384 | MS.gene015374 | PPI |
| MS.gene003384 | MS.gene72003 | PPI |
| MS.gene97202 | MS.gene003384 | PPI |
| MS.gene003384 | MS.gene021858 | PPI |
| MS.gene91663 | MS.gene003384 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003384.t1 | MTR_4g075790 | 99.231 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 0.0 | 536 |
| MS.gene003384.t1 | MTR_4g075790 | 98.930 | 187 | 2 | 0 | 74 | 260 | 8 | 194 | 1.23e-139 | 390 |
| MS.gene003384.t1 | MTR_4g098930 | 40.079 | 252 | 139 | 6 | 4 | 245 | 5 | 254 | 1.42e-62 | 197 |
| MS.gene003384.t1 | MTR_5g013440 | 39.344 | 244 | 138 | 5 | 4 | 242 | 12 | 250 | 2.94e-56 | 181 |
| MS.gene003384.t1 | MTR_4g099370 | 37.838 | 222 | 134 | 3 | 26 | 244 | 31 | 251 | 2.18e-53 | 173 |
| MS.gene003384.t1 | MTR_4g099400 | 36.471 | 170 | 107 | 1 | 74 | 242 | 9 | 178 | 2.32e-39 | 135 |
| MS.gene003384.t1 | MTR_0809s0010 | 33.333 | 213 | 137 | 4 | 26 | 234 | 50 | 261 | 1.06e-35 | 128 |
| MS.gene003384.t1 | MTR_2g090265 | 30.435 | 253 | 161 | 7 | 3 | 244 | 9 | 257 | 2.45e-29 | 111 |
| MS.gene003384.t1 | MTR_2g090270 | 29.688 | 256 | 163 | 7 | 2 | 244 | 8 | 259 | 7.31e-29 | 110 |
| MS.gene003384.t1 | MTR_0118s0070 | 31.100 | 209 | 137 | 4 | 40 | 242 | 67 | 274 | 3.02e-27 | 106 |
| MS.gene003384.t1 | MTR_4g028640 | 31.132 | 212 | 136 | 6 | 40 | 246 | 61 | 267 | 5.41e-27 | 105 |
| MS.gene003384.t1 | MTR_0122s0020 | 29.008 | 262 | 161 | 7 | 2 | 242 | 6 | 263 | 5.82e-27 | 105 |
| MS.gene003384.t1 | MTR_7g013120 | 30.952 | 252 | 143 | 9 | 5 | 238 | 10 | 248 | 7.96e-22 | 91.7 |
| MS.gene003384.t1 | MTR_7g013140 | 29.528 | 254 | 146 | 10 | 5 | 240 | 10 | 248 | 2.77e-20 | 87.4 |
| MS.gene003384.t1 | MTR_3g435430 | 30.081 | 246 | 137 | 10 | 11 | 237 | 13 | 242 | 4.54e-20 | 86.7 |
| MS.gene003384.t1 | MTR_0122s0020 | 29.146 | 199 | 120 | 5 | 2 | 180 | 6 | 203 | 8.14e-20 | 85.1 |
| MS.gene003384.t1 | MTR_8g464350 | 27.559 | 254 | 151 | 9 | 4 | 239 | 12 | 250 | 7.56e-19 | 83.6 |
| MS.gene003384.t1 | MTR_4g124340 | 27.273 | 231 | 136 | 7 | 25 | 237 | 63 | 279 | 7.66e-19 | 84.0 |
| MS.gene003384.t1 | MTR_8g058990 | 29.070 | 258 | 150 | 9 | 5 | 243 | 10 | 253 | 1.16e-18 | 82.8 |
| MS.gene003384.t1 | MTR_7g013150 | 29.804 | 255 | 144 | 10 | 5 | 239 | 10 | 249 | 1.71e-18 | 82.4 |
| MS.gene003384.t1 | MTR_1g085460 | 29.339 | 242 | 132 | 10 | 24 | 242 | 31 | 256 | 3.09e-18 | 82.0 |
| MS.gene003384.t1 | MTR_7g110990 | 30.992 | 242 | 139 | 11 | 19 | 242 | 7 | 238 | 3.46e-18 | 81.3 |
| MS.gene003384.t1 | MTR_7g111010 | 31.416 | 226 | 130 | 10 | 32 | 242 | 38 | 253 | 2.18e-17 | 79.3 |
| MS.gene003384.t1 | MTR_5g041700 | 29.070 | 258 | 146 | 11 | 1 | 237 | 1 | 242 | 2.11e-16 | 76.6 |
| MS.gene003384.t1 | MTR_5g011210 | 29.075 | 227 | 130 | 6 | 34 | 243 | 50 | 262 | 6.47e-16 | 75.5 |
| MS.gene003384.t1 | MTR_4g102450 | 27.434 | 226 | 133 | 7 | 34 | 242 | 49 | 260 | 1.82e-15 | 74.3 |
| MS.gene003384.t1 | MTR_5g075320 | 30.317 | 221 | 123 | 9 | 34 | 238 | 42 | 247 | 2.97e-15 | 73.6 |
| MS.gene003384.t1 | MTR_3g094040 | 27.602 | 221 | 127 | 9 | 34 | 237 | 44 | 248 | 1.16e-14 | 72.0 |
| MS.gene003384.t1 | MTR_3g094060 | 27.602 | 221 | 127 | 9 | 34 | 237 | 44 | 248 | 1.41e-14 | 71.6 |
| MS.gene003384.t1 | MTR_4g081950 | 27.477 | 222 | 130 | 7 | 32 | 237 | 72 | 278 | 2.76e-14 | 71.2 |
| MS.gene003384.t1 | MTR_7g061720 | 27.556 | 225 | 128 | 9 | 32 | 237 | 43 | 251 | 4.29e-14 | 70.5 |
| MS.gene003384.t1 | MTR_1g026020 | 27.111 | 225 | 142 | 9 | 32 | 243 | 40 | 255 | 5.68e-14 | 70.1 |
| MS.gene003384.t1 | MTR_3g466760 | 25.676 | 222 | 130 | 9 | 34 | 237 | 51 | 255 | 6.03e-14 | 70.1 |
| MS.gene003384.t1 | MTR_5g079950 | 27.556 | 225 | 128 | 10 | 32 | 237 | 44 | 252 | 9.94e-14 | 69.3 |
| MS.gene003384.t1 | MTR_2g090255 | 27.111 | 225 | 127 | 12 | 34 | 238 | 41 | 248 | 2.33e-13 | 68.2 |
| MS.gene003384.t1 | MTR_7g011060 | 25.397 | 252 | 153 | 10 | 1 | 237 | 4 | 235 | 4.55e-13 | 67.4 |
| MS.gene003384.t1 | MTR_3g466790 | 25.225 | 222 | 131 | 9 | 34 | 237 | 45 | 249 | 1.14e-12 | 66.2 |
| MS.gene003384.t1 | MTR_5g076950 | 26.293 | 232 | 137 | 9 | 26 | 238 | 44 | 260 | 1.24e-12 | 66.2 |
| MS.gene003384.t1 | MTR_0040s0140 | 25.794 | 252 | 150 | 11 | 4 | 234 | 13 | 248 | 3.20e-12 | 65.1 |
| MS.gene003384.t1 | MTR_2g097030 | 27.027 | 222 | 127 | 9 | 32 | 234 | 45 | 250 | 4.60e-12 | 64.7 |
| MS.gene003384.t1 | MTR_4g063975 | 28.191 | 188 | 104 | 7 | 32 | 201 | 43 | 217 | 3.04e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003384.t1 | AT3G45970 | 62.452 | 261 | 95 | 2 | 3 | 260 | 5 | 265 | 1.22e-112 | 325 |
| MS.gene003384.t1 | AT3G45960 | 64.567 | 254 | 88 | 1 | 3 | 254 | 5 | 258 | 6.23e-112 | 323 |
| MS.gene003384.t1 | AT4G38400 | 64.372 | 247 | 86 | 1 | 16 | 260 | 19 | 265 | 8.02e-110 | 318 |
| MS.gene003384.t1 | AT3G45970 | 61.233 | 227 | 85 | 2 | 37 | 260 | 12 | 238 | 7.33e-107 | 309 |
| MS.gene003384.t1 | AT3G45960 | 64.286 | 210 | 73 | 1 | 47 | 254 | 1 | 210 | 2.68e-102 | 296 |
| MS.gene003384.t1 | AT4G17030 | 39.640 | 222 | 132 | 1 | 25 | 244 | 29 | 250 | 4.19e-56 | 180 |
| MS.gene003384.t1 | AT1G65680 | 34.440 | 241 | 146 | 7 | 11 | 242 | 35 | 272 | 5.55e-32 | 119 |
| MS.gene003384.t1 | AT2G20750 | 31.321 | 265 | 154 | 9 | 5 | 246 | 11 | 270 | 7.97e-30 | 113 |
| MS.gene003384.t1 | AT3G60570 | 32.864 | 213 | 132 | 8 | 38 | 244 | 3 | 210 | 1.10e-28 | 108 |
| MS.gene003384.t1 | AT3G60570 | 32.407 | 216 | 135 | 8 | 33 | 242 | 46 | 256 | 3.03e-28 | 108 |
| MS.gene003384.t1 | AT4G28250 | 28.352 | 261 | 168 | 7 | 1 | 246 | 7 | 263 | 6.05e-28 | 108 |
| MS.gene003384.t1 | AT1G65681 | 28.571 | 210 | 142 | 4 | 38 | 242 | 15 | 221 | 5.21e-26 | 102 |
| MS.gene003384.t1 | AT2G45110 | 30.806 | 211 | 138 | 4 | 38 | 242 | 50 | 258 | 1.97e-25 | 101 |
| MS.gene003384.t1 | AT4G28250 | 27.586 | 261 | 164 | 8 | 1 | 246 | 7 | 257 | 5.14e-23 | 94.7 |
| MS.gene003384.t1 | AT2G20750 | 33.333 | 198 | 107 | 7 | 5 | 180 | 11 | 205 | 4.23e-22 | 91.7 |
| MS.gene003384.t1 | AT5G39290 | 27.935 | 247 | 147 | 11 | 12 | 242 | 47 | 278 | 2.53e-18 | 82.4 |
| MS.gene003384.t1 | AT1G20190 | 31.646 | 237 | 136 | 11 | 23 | 243 | 26 | 252 | 6.20e-18 | 80.9 |
| MS.gene003384.t1 | AT1G12560 | 31.579 | 209 | 127 | 8 | 40 | 239 | 56 | 257 | 7.62e-17 | 78.2 |
| MS.gene003384.t1 | AT5G39270 | 27.126 | 247 | 149 | 11 | 12 | 242 | 47 | 278 | 1.74e-16 | 77.4 |
| MS.gene003384.t1 | AT2G03090 | 27.600 | 250 | 146 | 10 | 7 | 237 | 14 | 247 | 3.77e-16 | 76.3 |
| MS.gene003384.t1 | AT5G05290 | 26.587 | 252 | 153 | 8 | 5 | 238 | 14 | 251 | 5.45e-16 | 75.9 |
| MS.gene003384.t1 | AT5G39260 | 27.273 | 231 | 155 | 7 | 13 | 238 | 35 | 257 | 8.93e-16 | 75.1 |
| MS.gene003384.t1 | AT4G28250 | 32.877 | 146 | 85 | 5 | 40 | 180 | 55 | 192 | 8.97e-16 | 74.3 |
| MS.gene003384.t1 | AT2G40610 | 28.507 | 221 | 126 | 9 | 34 | 237 | 43 | 248 | 9.66e-16 | 75.1 |
| MS.gene003384.t1 | AT5G39310 | 28.899 | 218 | 125 | 9 | 40 | 242 | 109 | 311 | 1.06e-15 | 75.9 |
| MS.gene003384.t1 | AT1G69530 | 28.959 | 221 | 124 | 8 | 34 | 237 | 40 | 244 | 2.57e-15 | 73.9 |
| MS.gene003384.t1 | AT1G69530 | 28.959 | 221 | 124 | 8 | 34 | 237 | 40 | 244 | 2.57e-15 | 73.9 |
| MS.gene003384.t1 | AT4G28250 | 27.979 | 193 | 117 | 6 | 1 | 179 | 7 | 191 | 2.84e-15 | 72.8 |
| MS.gene003384.t1 | AT2G39700 | 28.444 | 225 | 126 | 9 | 32 | 237 | 42 | 250 | 2.85e-15 | 73.9 |
| MS.gene003384.t1 | AT1G69530 | 28.571 | 224 | 127 | 8 | 34 | 240 | 40 | 247 | 3.38e-15 | 73.9 |
| MS.gene003384.t1 | AT5G02260 | 27.350 | 234 | 133 | 11 | 25 | 237 | 34 | 251 | 8.03e-15 | 72.4 |
| MS.gene003384.t1 | AT1G26770 | 25.692 | 253 | 153 | 8 | 1 | 234 | 4 | 240 | 1.48e-14 | 71.6 |
| MS.gene003384.t1 | AT1G26770 | 25.296 | 253 | 154 | 7 | 1 | 234 | 14 | 250 | 1.49e-14 | 71.6 |
| MS.gene003384.t1 | AT4G01630 | 27.413 | 259 | 160 | 11 | 1 | 243 | 9 | 255 | 1.80e-14 | 71.6 |
| MS.gene003384.t1 | AT5G56320 | 26.293 | 232 | 136 | 10 | 25 | 237 | 31 | 246 | 3.35e-14 | 70.9 |
| MS.gene003384.t1 | AT5G56320 | 26.293 | 232 | 136 | 10 | 25 | 237 | 31 | 246 | 3.35e-14 | 70.9 |
| MS.gene003384.t1 | AT5G56320 | 26.293 | 232 | 136 | 10 | 25 | 237 | 31 | 246 | 4.48e-14 | 70.9 |
| MS.gene003384.t1 | AT2G37640 | 27.523 | 218 | 137 | 7 | 32 | 237 | 47 | 255 | 1.78e-13 | 68.9 |
| MS.gene003384.t1 | AT1G69530 | 30.387 | 181 | 97 | 6 | 34 | 198 | 40 | 207 | 2.47e-13 | 67.8 |
| MS.gene003384.t1 | AT1G69530 | 30.387 | 181 | 97 | 6 | 34 | 198 | 40 | 207 | 3.24e-13 | 67.8 |
| MS.gene003384.t1 | AT1G20190 | 31.000 | 200 | 114 | 10 | 57 | 242 | 3 | 192 | 4.29e-13 | 66.6 |
| MS.gene003384.t1 | AT5G39280 | 25.820 | 244 | 150 | 9 | 15 | 242 | 46 | 274 | 4.81e-13 | 67.8 |
| MS.gene003384.t1 | AT3G15370 | 28.926 | 242 | 141 | 10 | 15 | 239 | 19 | 246 | 5.01e-13 | 67.4 |
| MS.gene003384.t1 | AT2G37640 | 27.230 | 213 | 134 | 7 | 37 | 237 | 27 | 230 | 1.00e-12 | 66.2 |
| MS.gene003384.t1 | AT5G39300 | 25.101 | 247 | 154 | 9 | 12 | 242 | 44 | 275 | 1.67e-12 | 66.2 |
| MS.gene003384.t1 | AT4G38210 | 27.928 | 222 | 127 | 8 | 34 | 237 | 43 | 249 | 2.41e-12 | 65.5 |
| MS.gene003384.t1 | AT3G15370 | 30.233 | 215 | 121 | 9 | 40 | 239 | 76 | 276 | 2.77e-12 | 65.9 |
| MS.gene003384.t1 | AT2G28950 | 28.000 | 225 | 127 | 10 | 32 | 237 | 42 | 250 | 1.25e-11 | 63.5 |
| MS.gene003384.t1 | AT3G55500 | 26.201 | 229 | 126 | 10 | 32 | 237 | 45 | 253 | 2.02e-11 | 62.8 |
| MS.gene003384.t1 | AT1G62980 | 28.378 | 222 | 128 | 8 | 35 | 239 | 45 | 252 | 2.45e-11 | 62.8 |
| MS.gene003384.t1 | AT3G29030 | 27.700 | 213 | 130 | 7 | 34 | 237 | 51 | 248 | 4.73e-11 | 62.0 |
Find 51 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTGTGGTGCTTGCTTTC+AGG | 0.151650 | 4.1:-28264237 | MS.gene003384:intron |
| GTTTCTTCACTCTTCTATAA+TGG | 0.287049 | 4.1:-28264263 | MS.gene003384:CDS |
| ACTAGGTTGGATCTTCAAAT+TGG | 0.295466 | 4.1:-28262482 | MS.gene003384:intron |
| AATTTAATTGCTAAATAATC+TGG | 0.300940 | 4.1:+28262668 | None:intergenic |
| CATCAGGGTATGATGGTAAA+TGG | 0.338953 | 4.1:-28262377 | MS.gene003384:CDS |
| GGCATTGCAATTTCGTTTAG+TGG | 0.362944 | 4.1:-28262403 | MS.gene003384:CDS |
| AAAAGGTTCTTCCAGCTGAT+TGG | 0.372823 | 4.1:-28262344 | MS.gene003384:CDS |
| CTTTACAGCTATGGCTCAAA+AGG | 0.376515 | 4.1:-28263887 | MS.gene003384:CDS |
| TCTTTAGCACTTGACTTTAG+TGG | 0.377568 | 4.1:-28264305 | MS.gene003384:CDS |
| TTTGGAGAAATAAGAAGCTT+TGG | 0.378209 | 4.1:+28264454 | None:intergenic |
| TTTCGTTTAGTGGTTACATC+AGG | 0.387420 | 4.1:-28262393 | MS.gene003384:CDS |
| TTCTATAATGGAGCTGGTTG+TGG | 0.406537 | 4.1:-28264251 | MS.gene003384:CDS |
| AGTGGTGGCCACCTTGCAGC+TGG | 0.430129 | 4.1:-28264287 | MS.gene003384:CDS |
| GCAGCTGGGGCATGTGGGTA+TGG | 0.430576 | 4.1:-28264329 | MS.gene003384:intron |
| TCACTCTTCTATAATGGAGC+TGG | 0.434156 | 4.1:-28264257 | MS.gene003384:CDS |
| ACATGAAAGAGCAGAAGCTT+TGG | 0.441652 | 4.1:+28264436 | None:intergenic |
| CTGTAAAGGCTCTACTGCTT+AGG | 0.481361 | 4.1:+28263902 | None:intergenic |
| TTATATGCAGCTGGGGCATG+TGG | 0.485952 | 4.1:-28264335 | MS.gene003384:intron |
| GGTATGATGGTAAATGGCTA+TGG | 0.487295 | 4.1:-28262371 | MS.gene003384:CDS |
| AGTTTCTTGAGCAGAAATCA+TGG | 0.495684 | 4.1:-28262459 | MS.gene003384:CDS |
| GTGGTTACATCAGGGTATGA+TGG | 0.498564 | 4.1:-28262384 | MS.gene003384:CDS |
| GGGCAGTGTGGGACACAAGT+AGG | 0.499790 | 4.1:-28262437 | MS.gene003384:CDS |
| CAGTAGAGCCTTTACAGCTA+TGG | 0.510486 | 4.1:-28263896 | MS.gene003384:CDS |
| GACCATGTTTCATCATTACA+TGG | 0.510819 | 4.1:+28262258 | None:intergenic |
| GTTTCTTGAGCAGAAATCAT+GGG | 0.515717 | 4.1:-28262458 | MS.gene003384:CDS |
| AGTAGGTGTTGATGTAGCTC+AGG | 0.516706 | 4.1:-28262618 | MS.gene003384:intron |
| CAGAAATCATGGGGCAGTGT+GGG | 0.519402 | 4.1:-28262448 | MS.gene003384:CDS |
| CAAGCTATATGCACAAAAGA+AGG | 0.520775 | 4.1:-28263976 | MS.gene003384:CDS |
| TGCCAAGTTTCAAAATCTGT+TGG | 0.529827 | 4.1:+28263857 | None:intergenic |
| TATATGCAGCTGGGGCATGT+GGG | 0.536289 | 4.1:-28264334 | MS.gene003384:intron |
| AAGATCAGTCAATACCACTT+TGG | 0.552511 | 4.1:+28263951 | None:intergenic |
| GGCAGTGTGGGACACAAGTA+GGG | 0.554581 | 4.1:-28262436 | MS.gene003384:CDS |
| TTAGCACTTGACTTTAGTGG+TGG | 0.554795 | 4.1:-28264302 | MS.gene003384:CDS |
| CACAAGTAGGGTTCCACAAG+GGG | 0.563760 | 4.1:-28262424 | MS.gene003384:CDS |
| TTCGTTTAGTGGTTACATCA+GGG | 0.571759 | 4.1:-28262392 | MS.gene003384:CDS |
| GATTACAGAAATTGCACAGG+AGG | 0.581799 | 4.1:-28262289 | MS.gene003384:CDS |
| TCAGATTACAGAAATTGCAC+AGG | 0.586054 | 4.1:-28262292 | MS.gene003384:CDS |
| CGAAATTGCAATGCCCCTTG+TGG | 0.586600 | 4.1:+28262411 | None:intergenic |
| GTATGATGGTAAATGGCTAT+GGG | 0.593985 | 4.1:-28262370 | MS.gene003384:CDS |
| TTGTTGACATTGAATACAAG+AGG | 0.607511 | 4.1:-28263834 | MS.gene003384:intron |
| GTGAAGAAACACCAGCTGCA+AGG | 0.611075 | 4.1:+28264276 | None:intergenic |
| TTTACAGCTATGGCTCAAAA+GGG | 0.611980 | 4.1:-28263886 | MS.gene003384:CDS |
| ACACAAGTAGGGTTCCACAA+GGG | 0.618151 | 4.1:-28262425 | MS.gene003384:CDS |
| CAAGCAACGATCACAAGCAG+TGG | 0.634417 | 4.1:+28264484 | None:intergenic |
| GCAGAAATCATGGGGCAGTG+TGG | 0.638652 | 4.1:-28262449 | MS.gene003384:CDS |
| ATTACAGAAATTGCACAGGA+GGG | 0.647308 | 4.1:-28262288 | MS.gene003384:CDS |
| TTTCTTGAGCAGAAATCATG+GGG | 0.654832 | 4.1:-28262457 | MS.gene003384:CDS |
| GACACAAGTAGGGTTCCACA+AGG | 0.655516 | 4.1:-28262426 | MS.gene003384:CDS |
| CACAAAAGAAGGTACCAAAG+TGG | 0.665562 | 4.1:-28263965 | MS.gene003384:CDS |
| CACCATGTAATGATGAAACA+TGG | 0.686342 | 4.1:-28262260 | MS.gene003384:CDS |
| AAGAAACACCAGCTGCAAGG+TGG | 0.714603 | 4.1:+28264279 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAATATATTTAATT+TGG | + | chr4.1:28262723-28262742 | None:intergenic | 0.0% |
| !! | AAAAATTGTAAAAAAAAATC+CGG | + | chr4.1:28263494-28263513 | None:intergenic | 10.0% |
| !! | TTAAAAAAATAATTAACCAT+TGG | - | chr4.1:28264257-28264276 | MS.gene003384:CDS | 10.0% |
| !! | TTTATTTATCAATTTGTATA+TGG | - | chr4.1:28263989-28264008 | MS.gene003384:CDS | 10.0% |
| !!! | ATGTACTATATATTAATTTT+AGG | - | chr4.1:28263235-28263254 | MS.gene003384:intron | 10.0% |
| !!! | TGTACTATATATTAATTTTA+GGG | - | chr4.1:28263236-28263255 | MS.gene003384:intron | 10.0% |
| !! | AAAATTGTAAAAAAAAATCC+GGG | + | chr4.1:28263493-28263512 | None:intergenic | 15.0% |
| !! | AATTTAATTGCTAAATAATC+TGG | + | chr4.1:28264119-28264138 | None:intergenic | 15.0% |
| !! | TTTAATTCAATAAAAACACT+TGG | + | chr4.1:28264242-28264261 | None:intergenic | 15.0% |
| !!! | AATTAAATTTTTGTATCAAG+GGG | - | chr4.1:28264130-28264149 | MS.gene003384:intron | 15.0% |
| !!! | ATTTTATAATGTCGTAAATT+TGG | - | chr4.1:28263933-28263952 | MS.gene003384:CDS | 15.0% |
| !!! | CAATTAAATTTTTGTATCAA+GGG | - | chr4.1:28264129-28264148 | MS.gene003384:intron | 15.0% |
| !! | AAAAACAAAAAAAATAAGCC+AGG | + | chr4.1:28263439-28263458 | None:intergenic | 20.0% |
| !! | AAAACAAAAAAAATAAGCCA+GGG | + | chr4.1:28263438-28263457 | None:intergenic | 20.0% |
| !! | ATGCACTACATTAAAATTAA+GGG | + | chr4.1:28263845-28263864 | None:intergenic | 20.0% |
| !! | TATGCACTACATTAAAATTA+AGG | + | chr4.1:28263846-28263865 | None:intergenic | 20.0% |
| !!! | ATTAAATTTTTGTATCAAGG+GGG | - | chr4.1:28264131-28264150 | MS.gene003384:intron | 20.0% |
| !!! | CTGAAAAAACTGAATTTTTT+CGG | + | chr4.1:28263520-28263539 | None:intergenic | 20.0% |
| !!! | GCAATTAAATTTTTGTATCA+AGG | - | chr4.1:28264128-28264147 | MS.gene003384:intron | 20.0% |
| !!! | TTCATATAATTTGTCTACAT+TGG | + | chr4.1:28263167-28263186 | None:intergenic | 20.0% |
| ! | AAACAAAAAAAATAAGCCAG+GGG | + | chr4.1:28263437-28263456 | None:intergenic | 25.0% |
| ! | AACAATTTATCAAAATGGCA+TGG | + | chr4.1:28263685-28263704 | None:intergenic | 25.0% |
| ! | ACAATTTATCAAAATGGCAT+GGG | + | chr4.1:28263684-28263703 | None:intergenic | 25.0% |
| ! | ACGTCAACAATTTATCAAAA+TGG | + | chr4.1:28263690-28263709 | None:intergenic | 25.0% |
| ! | ATTAATGAACAATTTGATGC+AGG | - | chr4.1:28262771-28262790 | MS.gene003384:intron | 25.0% |
| ! | CTTATTAATTACTACTAGGT+TGG | - | chr4.1:28264289-28264308 | MS.gene003384:CDS | 25.0% |
| ! | TAAGGAAAAAAAATAAGCCA+GGG | - | chr4.1:28263642-28263661 | MS.gene003384:intron | 25.0% |
| ! | TAATGTCGTAAATTTGGAAA+TGG | - | chr4.1:28263939-28263958 | MS.gene003384:CDS | 25.0% |
| ! | TAGCGCAATAATAATAGTAA+CGG | - | chr4.1:28263203-28263222 | MS.gene003384:intron | 25.0% |
| ! | TCAAATGACCTATAATTGTA+GGG | + | chr4.1:28263279-28263298 | None:intergenic | 25.0% |
| ! | TGAGTACAAAAAACAGAATT+TGG | - | chr4.1:28264064-28264083 | MS.gene003384:intron | 25.0% |
| ! | TTAAGGAAAAAAAATAAGCC+AGG | - | chr4.1:28263641-28263660 | MS.gene003384:intron | 25.0% |
| ! | TTCAAATGACCTATAATTGT+AGG | + | chr4.1:28263280-28263299 | None:intergenic | 25.0% |
| !! | ACTGGGAAAAAAAATTTTGA+AGG | + | chr4.1:28263465-28263484 | None:intergenic | 25.0% |
| !! | TCAAGTGATTAACTTTTACA+GGG | - | chr4.1:28263742-28263761 | MS.gene003384:intron | 25.0% |
| !! | TCAAGTGATTAACTTTTACA+GGG | + | chr4.1:28263761-28263742 | None:intergenic | 25.0% |
| !! | TTCAAGTGATTAACTTTTAC+AGG | - | chr4.1:28263741-28263760 | MS.gene003384:intron | 25.0% |
| !! | TTCAAGTGATTAACTTTTAC+AGG | + | chr4.1:28263760-28263741 | None:intergenic | 25.0% |
| !!! | ATTTAATTTGGCTAAATGTC+AGG | + | chr4.1:28262711-28262730 | None:intergenic | 25.0% |
| !!! | ATTTTGATAAATTGTTGACG+TGG | - | chr4.1:28263689-28263708 | MS.gene003384:intron | 25.0% |
| !!! | ATTTTTTTTATATGCAGCTG+GGG | - | chr4.1:28262442-28262461 | MS.gene003384:CDS | 25.0% |
| !!! | GATTTTTTTTATATGCAGCT+GGG | - | chr4.1:28262441-28262460 | MS.gene003384:CDS | 25.0% |
| !!! | TGATTTTTTTTATATGCAGC+TGG | - | chr4.1:28262440-28262459 | MS.gene003384:CDS | 25.0% |
| AAAAAAATCCGGGAAAAAAC+TGG | + | chr4.1:28263483-28263502 | None:intergenic | 30.0% | |
| AAAAAATCCGGGAAAAAACT+GGG | + | chr4.1:28263482-28263501 | None:intergenic | 30.0% | |
| AAGGAAAAAAAATAAGCCAG+GGG | - | chr4.1:28263643-28263662 | MS.gene003384:intron | 30.0% | |
| CAATTTATCAAAATGGCATG+GGG | + | chr4.1:28263683-28263702 | None:intergenic | 30.0% | |
| GAAGTAAAGCTACAAAAAAG+TGG | + | chr4.1:28262989-28263008 | None:intergenic | 30.0% | |
| GTGGCTTATTAATTACTACT+AGG | - | chr4.1:28264285-28264304 | MS.gene003384:CDS | 30.0% | |
| GTTTCTTCACTCTTCTATAA+TGG | - | chr4.1:28262521-28262540 | MS.gene003384:intron | 30.0% | |
| TTGTTGACATTGAATACAAG+AGG | - | chr4.1:28262950-28262969 | MS.gene003384:intron | 30.0% | |
| TTTGGAGAAATAAGAAGCTT+TGG | + | chr4.1:28262333-28262352 | None:intergenic | 30.0% | |
| ! | ATTTTCGTCCCTACAATTAT+AGG | - | chr4.1:28263268-28263287 | MS.gene003384:intron | 30.0% |
| ! | TCTTAATATGCCAGCATTTT+TGG | - | chr4.1:28263078-28263097 | MS.gene003384:intron | 30.0% |
| !! | CATTGGTGTTCTATTTTCAA+TGG | + | chr4.1:28263150-28263169 | None:intergenic | 30.0% |
| !! | TAATTAACCATTGGTTTCTG+TGG | - | chr4.1:28264266-28264285 | MS.gene003384:CDS | 30.0% |
| !!! | CACTTGGTAATGATTTTTGT+TGG | + | chr4.1:28264226-28264245 | None:intergenic | 30.0% |
| !!! | GTCAGGATAGTTTTAAAATG+CGG | + | chr4.1:28262694-28262713 | None:intergenic | 30.0% |
| !!! | TTCTGTTTTTTGTACTCACA+TGG | + | chr4.1:28264062-28264081 | None:intergenic | 30.0% |
| !!! | TTTTTTTCCCAGTTTTTTCC+CGG | - | chr4.1:28263472-28263491 | MS.gene003384:intron | 30.0% |
| AAAACCCGAATACGATGATT+TGG | + | chr4.1:28262580-28262599 | None:intergenic | 35.0% | |
| AAACCCGAATACGATGATTT+GGG | + | chr4.1:28262579-28262598 | None:intergenic | 35.0% | |
| AAGATCAGTCAATACCACTT+TGG | + | chr4.1:28262836-28262855 | None:intergenic | 35.0% | |
| ACGTCAGCAAATTACCAAAA+TGG | - | chr4.1:28263391-28263410 | MS.gene003384:intron | 35.0% | |
| AGCAAATTACCAAAATGGCA+TGG | - | chr4.1:28263396-28263415 | MS.gene003384:intron | 35.0% | |
| AGTTTCTTGAGCAGAAATCA+TGG | - | chr4.1:28264325-28264344 | MS.gene003384:CDS | 35.0% | |
| ATGATTAATAACACCGGCAA+CGG | + | chr4.1:28262624-28262643 | None:intergenic | 35.0% | |
| ATGCTGGCATATTAAGAATG+TGG | + | chr4.1:28263075-28263094 | None:intergenic | 35.0% | |
| ATTACAGAAATTGCACAGGA+GGG | - | chr4.1:28264496-28264515 | MS.gene003384:CDS | 35.0% | |
| CAAGCTATATGCACAAAAGA+AGG | - | chr4.1:28262808-28262827 | MS.gene003384:intron | 35.0% | |
| CACCATGTAATGATGAAACA+TGG | - | chr4.1:28264524-28264543 | MS.gene003384:CDS | 35.0% | |
| GACCATGTTTCATCATTACA+TGG | + | chr4.1:28264529-28264548 | None:intergenic | 35.0% | |
| GCAAATTACCAAAATGGCAT+GGG | - | chr4.1:28263397-28263416 | MS.gene003384:intron | 35.0% | |
| GTATGATGGTAAATGGCTAT+GGG | - | chr4.1:28264414-28264433 | MS.gene003384:intron | 35.0% | |
| GTTTCTTGAGCAGAAATCAT+GGG | - | chr4.1:28264326-28264345 | MS.gene003384:CDS | 35.0% | |
| TAAATGGCTATGGGCAAAAA+AGG | - | chr4.1:28264423-28264442 | MS.gene003384:intron | 35.0% | |
| TAATAAGCCACAGAAACCAA+TGG | + | chr4.1:28264276-28264295 | None:intergenic | 35.0% | |
| TCAAATGGCCTATAATTGCA+GGG | - | chr4.1:28263802-28263821 | MS.gene003384:intron | 35.0% | |
| TCAGATTACAGAAATTGCAC+AGG | - | chr4.1:28264492-28264511 | MS.gene003384:CDS | 35.0% | |
| TCTTTAGCACTTGACTTTAG+TGG | - | chr4.1:28262479-28262498 | MS.gene003384:CDS | 35.0% | |
| TGCCAAGTTTCAAAATCTGT+TGG | + | chr4.1:28262930-28262949 | None:intergenic | 35.0% | |
| TGTACCCAAATCATCGTATT+CGG | - | chr4.1:28262572-28262591 | MS.gene003384:intron | 35.0% | |
| TTCAAATGGCCTATAATTGC+AGG | - | chr4.1:28263801-28263820 | MS.gene003384:intron | 35.0% | |
| TTCCAGCTGATTGGAAAAAT+GGG | - | chr4.1:28264449-28264468 | MS.gene003384:CDS | 35.0% | |
| TTCGTTTAGTGGTTACATCA+GGG | - | chr4.1:28264392-28264411 | MS.gene003384:intron | 35.0% | |
| TTTACAGCTATGGCTCAAAA+GGG | - | chr4.1:28262898-28262917 | MS.gene003384:intron | 35.0% | |
| TTTCGTTTAGTGGTTACATC+AGG | - | chr4.1:28264391-28264410 | MS.gene003384:intron | 35.0% | |
| TTTCTTGAGCAGAAATCATG+GGG | - | chr4.1:28264327-28264346 | MS.gene003384:CDS | 35.0% | |
| ! | AACTTTTACAGGGACGAAAT+GGG | - | chr4.1:28263752-28263771 | MS.gene003384:intron | 35.0% |
| ! | AACTTTTACAGGGACGAAAT+GGG | + | chr4.1:28263771-28263752 | None:intergenic | 35.0% |
| ! | ACTAGGTTGGATCTTCAAAT+TGG | - | chr4.1:28264302-28264321 | MS.gene003384:CDS | 35.0% |
| ! | CTTCTTTTGTGCATATAGCT+TGG | + | chr4.1:28262810-28262829 | None:intergenic | 35.0% |
| ! | GGTGTTCTATTTTCAATGGT+GGG | + | chr4.1:28263146-28263165 | None:intergenic | 35.0% |
| ! | TAACTTTTACAGGGACGAAA+TGG | - | chr4.1:28263751-28263770 | MS.gene003384:intron | 35.0% |
| ! | TAACTTTTACAGGGACGAAA+TGG | + | chr4.1:28263770-28263751 | None:intergenic | 35.0% |
| ! | TAATCCCACGTGGATTTTAA+TGG | - | chr4.1:28264027-28264046 | MS.gene003384:intron | 35.0% |
| ! | TGGTGTTCTATTTTCAATGG+TGG | + | chr4.1:28263147-28263166 | None:intergenic | 35.0% |
| !! | TTCTATTTTCAATGGTGGGA+CGG | + | chr4.1:28263142-28263161 | None:intergenic | 35.0% |
| !!! | AATATGCCAGCATTTTTGGT+TGG | - | chr4.1:28263082-28263101 | MS.gene003384:intron | 35.0% |
| !!! | AGCCAACAGATTTTGAAACT+TGG | - | chr4.1:28262925-28262944 | MS.gene003384:intron | 35.0% |
| !!! | ATTTTGGTAATTTGCTGACG+TGG | + | chr4.1:28263392-28263411 | None:intergenic | 35.0% |
| AAAAGGTTCTTCCAGCTGAT+TGG | - | chr4.1:28264440-28264459 | MS.gene003384:CDS | 40.0% | |
| ACATGAAAGAGCAGAAGCTT+TGG | + | chr4.1:28262351-28262370 | None:intergenic | 40.0% | |
| CATCAGGGTATGATGGTAAA+TGG | - | chr4.1:28264407-28264426 | MS.gene003384:intron | 40.0% | |
| CTCAGGGACGAAAATTCAAA+TGG | - | chr4.1:28263787-28263806 | MS.gene003384:intron | 40.0% | |
| CTTCCAGCTGATTGGAAAAA+TGG | - | chr4.1:28264448-28264467 | MS.gene003384:CDS | 40.0% | |
| CTTTACAGCTATGGCTCAAA+AGG | - | chr4.1:28262897-28262916 | MS.gene003384:intron | 40.0% | |
| GATTACAGAAATTGCACAGG+AGG | - | chr4.1:28264495-28264514 | MS.gene003384:CDS | 40.0% | |
| GCAGTGATTAAAAGGGAAGA+GGG | - | chr4.1:28263711-28263730 | MS.gene003384:intron | 40.0% | |
| GGCATTGCAATTTCGTTTAG+TGG | - | chr4.1:28264381-28264400 | MS.gene003384:intron | 40.0% | |
| GGTATGATGGTAAATGGCTA+TGG | - | chr4.1:28264413-28264432 | MS.gene003384:intron | 40.0% | |
| GTACCCAAATCATCGTATTC+GGG | - | chr4.1:28262573-28262592 | MS.gene003384:intron | 40.0% | |
| GTCCGCATGATTAATAACAC+CGG | + | chr4.1:28262630-28262649 | None:intergenic | 40.0% | |
| TCCAGCTGATTGGAAAAATG+GGG | - | chr4.1:28264450-28264469 | MS.gene003384:CDS | 40.0% | |
| TGACGTGGCAGTGATTAAAA+GGG | - | chr4.1:28263704-28263723 | MS.gene003384:intron | 40.0% | |
| TGACGTGGCAGTGATTAAAA+GGG | + | chr4.1:28263723-28263704 | None:intergenic | 40.0% | |
| TGCACCATTAAAATCCACGT+GGG | + | chr4.1:28264034-28264053 | None:intergenic | 40.0% | |
| TGGGAGGATTAATAAGCTCA+AGG | + | chr4.1:28263310-28263329 | None:intergenic | 40.0% | |
| TTAGCACTTGACTTTAGTGG+TGG | - | chr4.1:28262482-28262501 | MS.gene003384:intron | 40.0% | |
| TTGACGTGGCAGTGATTAAA+AGG | - | chr4.1:28263703-28263722 | MS.gene003384:intron | 40.0% | |
| ! | CTTTTCGTCCCTGCAATTAT+AGG | + | chr4.1:28263813-28263832 | None:intergenic | 40.0% |
| ! | CTTTTGAGCCATAGCTGTAA+AGG | + | chr4.1:28262899-28262918 | None:intergenic | 40.0% |
| ! | GAACATTGATTAATCCCACG+TGG | - | chr4.1:28264017-28264036 | MS.gene003384:intron | 40.0% |
| ! | TCACTCTTCTATAATGGAGC+TGG | - | chr4.1:28262527-28262546 | MS.gene003384:intron | 40.0% |
| ! | TTCTATAATGGAGCTGGTTG+TGG | - | chr4.1:28262533-28262552 | MS.gene003384:intron | 40.0% |
| !! | CACAAAAGAAGGTACCAAAG+TGG | - | chr4.1:28262819-28262838 | MS.gene003384:intron | 40.0% |
| !! | TGCCGGTGTTATTAATCATG+CGG | - | chr4.1:28262625-28262644 | MS.gene003384:CDS | 40.0% |
| ACACAAGTAGGGTTCCACAA+GGG | - | chr4.1:28264359-28264378 | MS.gene003384:intron | 45.0% | |
| CAGTAGAGCCTTTACAGCTA+TGG | - | chr4.1:28262888-28262907 | MS.gene003384:intron | 45.0% | |
| CTGACGTGGCAGTGATTAAA+AGG | + | chr4.1:28263378-28263397 | None:intergenic | 45.0% | |
| CTGCACCATTAAAATCCACG+TGG | + | chr4.1:28264035-28264054 | None:intergenic | 45.0% | |
| CTGTAAAGGCTCTACTGCTT+AGG | + | chr4.1:28262885-28262904 | None:intergenic | 45.0% | |
| GACGTGGCAGTGATTAAAAG+GGG | + | chr4.1:28263724-28263705 | None:intergenic | 45.0% | |
| GCAGTGATTAAAAGGGGAGA+GGG | + | chr4.1:28263370-28263389 | None:intergenic | 45.0% | |
| GGAATTGACGAAAATACCCC+TGG | - | chr4.1:28263418-28263437 | MS.gene003384:intron | 45.0% | |
| GGAATTGACGAAAATACCCC+TGG | + | chr4.1:28263437-28263418 | None:intergenic | 45.0% | |
| GGCAGTGATTAAAAGGGAAG+AGG | - | chr4.1:28263710-28263729 | MS.gene003384:intron | 45.0% | |
| GTGGTTACATCAGGGTATGA+TGG | - | chr4.1:28264400-28264419 | MS.gene003384:intron | 45.0% | |
| ! | ATGGGAGGATTAGTAAGCTC+AGG | - | chr4.1:28263770-28263789 | MS.gene003384:intron | 45.0% |
| ! | CACTGTCTACTAGCTTAGGT+GGG | + | chr4.1:28263116-28263135 | None:intergenic | 45.0% |
| ! | TACTAGCTTAGGTGGGAAGT+GGG | + | chr4.1:28263109-28263128 | None:intergenic | 45.0% |
| ! | TGGGAGGATTAGTAAGCTCA+GGG | - | chr4.1:28263771-28263790 | MS.gene003384:intron | 45.0% |
| ! | TTTTACAGGGACGAAATGGG+AGG | - | chr4.1:28263755-28263774 | MS.gene003384:intron | 45.0% |
| ! | TTTTACAGGGACGAAATGGG+AGG | + | chr4.1:28263774-28263755 | None:intergenic | 45.0% |
| !! | ACCCCATTTTTCCAATCAGC+TGG | + | chr4.1:28264454-28264473 | None:intergenic | 45.0% |
| !! | AGTAGGTGTTGATGTAGCTC+AGG | - | chr4.1:28264166-28264185 | MS.gene003384:intron | 45.0% |
| !! | CGTCAATTCCCATGCCATTT+TGG | + | chr4.1:28263408-28263427 | None:intergenic | 45.0% |
| !! | TTAAAAATCATAAAAAATTT+CGG | + | chr4.1:28263564-28263583 | None:intergenic | 5.0% |
| !!! | AAAATTTTGAAATTTTTTTA+AGG | - | chr4.1:28263624-28263643 | MS.gene003384:intron | 5.0% |
| AAGAAACACCAGCTGCAAGG+TGG | + | chr4.1:28262508-28262527 | None:intergenic | 50.0% | |
| CAAGCAACGATCACAAGCAG+TGG | + | chr4.1:28262303-28262322 | None:intergenic | 50.0% | |
| CACAAGTAGGGTTCCACAAG+GGG | - | chr4.1:28264360-28264379 | MS.gene003384:intron | 50.0% | |
| CAGAAATCATGGGGCAGTGT+GGG | - | chr4.1:28264336-28264355 | MS.gene003384:intron | 50.0% | |
| CCACCTAAGCTAGTAGACAG+TGG | - | chr4.1:28263114-28263133 | MS.gene003384:intron | 50.0% | |
| CGAAATTGCAATGCCCCTTG+TGG | + | chr4.1:28264376-28264395 | None:intergenic | 50.0% | |
| GACACAAGTAGGGTTCCACA+AGG | - | chr4.1:28264358-28264377 | MS.gene003384:intron | 50.0% | |
| GGCAGTGATTAAAAGGGGAG+AGG | + | chr4.1:28263371-28263390 | None:intergenic | 50.0% | |
| GGGGGTCAAACAGAGATAGT+AGG | - | chr4.1:28264149-28264168 | MS.gene003384:intron | 50.0% | |
| GTGAAGAAACACCAGCTGCA+AGG | + | chr4.1:28262511-28262530 | None:intergenic | 50.0% | |
| GTGGGTCCAACCAAAAATGC+TGG | + | chr4.1:28263091-28263110 | None:intergenic | 50.0% | |
| TATATGCAGCTGGGGCATGT+GGG | - | chr4.1:28262450-28262469 | MS.gene003384:CDS | 50.0% | |
| TGGTTGTGGTGCTTGCTTTC+AGG | - | chr4.1:28262547-28262566 | MS.gene003384:intron | 50.0% | |
| TTATATGCAGCTGGGGCATG+TGG | - | chr4.1:28262449-28262468 | MS.gene003384:CDS | 50.0% | |
| ! | CCACTGTCTACTAGCTTAGG+TGG | + | chr4.1:28263117-28263136 | None:intergenic | 50.0% |
| ! | CTACTAGCTTAGGTGGGAAG+TGG | + | chr4.1:28263110-28263129 | None:intergenic | 50.0% |
| ! | GTGCCACTGTCTACTAGCTT+AGG | + | chr4.1:28263120-28263139 | None:intergenic | 50.0% |
| GCAGAAATCATGGGGCAGTG+TGG | - | chr4.1:28264335-28264354 | MS.gene003384:intron | 55.0% | |
| GGCAGTGTGGGACACAAGTA+GGG | - | chr4.1:28264348-28264367 | MS.gene003384:intron | 55.0% | |
| GTTGCAGTCATTGCCGTTGC+CGG | - | chr4.1:28262608-28262627 | MS.gene003384:intron | 55.0% | |
| GGGCAGTGTGGGACACAAGT+AGG | - | chr4.1:28264347-28264366 | MS.gene003384:intron | 60.0% | |
| AGTGGTGGCCACCTTGCAGC+TGG | - | chr4.1:28262497-28262516 | MS.gene003384:intron | 65.0% | |
| GCAGCTGGGGCATGTGGGTA+TGG | - | chr4.1:28262455-28262474 | MS.gene003384:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 28262254 | 28264552 | 28262254 | ID=MS.gene003384 |
| chr4.1 | mRNA | 28262254 | 28264552 | 28262254 | ID=MS.gene003384.t1;Parent=MS.gene003384 |
| chr4.1 | exon | 28264438 | 28264552 | 28264438 | ID=MS.gene003384.t1.exon1;Parent=MS.gene003384.t1 |
| chr4.1 | CDS | 28264438 | 28264552 | 28264438 | ID=cds.MS.gene003384.t1;Parent=MS.gene003384.t1 |
| chr4.1 | exon | 28264238 | 28264347 | 28264238 | ID=MS.gene003384.t1.exon2;Parent=MS.gene003384.t1 |
| chr4.1 | CDS | 28264238 | 28264347 | 28264238 | ID=cds.MS.gene003384.t1;Parent=MS.gene003384.t1 |
| chr4.1 | exon | 28263835 | 28264013 | 28263835 | ID=MS.gene003384.t1.exon3;Parent=MS.gene003384.t1 |
| chr4.1 | CDS | 28263835 | 28264013 | 28263835 | ID=cds.MS.gene003384.t1;Parent=MS.gene003384.t1 |
| chr4.1 | exon | 28262619 | 28262751 | 28262619 | ID=MS.gene003384.t1.exon4;Parent=MS.gene003384.t1 |
| chr4.1 | CDS | 28262619 | 28262751 | 28262619 | ID=cds.MS.gene003384.t1;Parent=MS.gene003384.t1 |
| chr4.1 | exon | 28262254 | 28262499 | 28262254 | ID=MS.gene003384.t1.exon5;Parent=MS.gene003384.t1 |
| chr4.1 | CDS | 28262254 | 28262499 | 28262254 | ID=cds.MS.gene003384.t1;Parent=MS.gene003384.t1 |
| Gene Sequence |
| Protein sequence |
