Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011729.t1 | XP_013457492.1 | 98.7 | 452 | 6 | 0 | 11 | 462 | 1 | 452 | 2.70E-270 | 940.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011729.t1 | Q50228 | 50.1 | 427 | 186 | 6 | 17 | 443 | 2 | 401 | 5.9e-125 | 449.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011729.t1 | B7FKV4 | 98.7 | 452 | 6 | 0 | 11 | 462 | 1 | 452 | 1.9e-270 | 940.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011729 | MS.gene061115 | PPI |
| MS.gene011729 | MS.gene44475 | PPI |
| MS.gene011729 | MS.gene011731 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011729.t1 | MTR_4g095660 | 98.673 | 452 | 6 | 0 | 11 | 462 | 1 | 452 | 0.0 | 922 |
| MS.gene011729.t1 | MTR_4g095660 | 93.363 | 452 | 30 | 0 | 11 | 462 | 1 | 452 | 0.0 | 870 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011729.t1 | AT4G37560 | 81.858 | 452 | 82 | 0 | 11 | 462 | 1 | 452 | 0.0 | 784 |
| MS.gene011729.t1 | AT4G37550 | 81.637 | 452 | 83 | 0 | 11 | 462 | 1 | 452 | 0.0 | 762 |
| MS.gene011729.t1 | AT4G37550 | 78.540 | 452 | 77 | 1 | 11 | 462 | 1 | 432 | 0.0 | 723 |
| MS.gene011729.t1 | AT4G37560 | 82.524 | 412 | 72 | 0 | 11 | 422 | 1 | 412 | 0.0 | 723 |
| MS.gene011729.t1 | AT4G37550 | 81.796 | 412 | 75 | 0 | 11 | 422 | 1 | 412 | 0.0 | 699 |
| MS.gene011729.t1 | AT4G37550 | 79.843 | 382 | 77 | 0 | 11 | 392 | 1 | 382 | 0.0 | 631 |
| MS.gene011729.t1 | AT4G37550 | 85.099 | 302 | 45 | 0 | 161 | 462 | 1 | 302 | 0.0 | 541 |
| MS.gene011729.t1 | AT4G37550 | 77.627 | 295 | 66 | 0 | 11 | 305 | 1 | 295 | 2.40e-166 | 471 |
Find 0 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATAAAATAAAAAATC+AGG | + | 32636:11878-11897 | MS.gene011729:intergenic | 10.0% |
| !!! | TTTTTTTTGGTAATTAATTT+TGG | - | 32636:13317-13336 | MS.gene011729:intron | 10.0% |
| !! | AACTTTAAATAATAGTTATG+TGG | - | 32636:15420-15439 | MS.gene011729:CDS | 15.0% |
| !! | ATATTATATATGAGAACAAA+GGG | - | 32636:13782-13801 | MS.gene011729:intron | 15.0% |
| !! | GTATTATTAACATAATTGTA+TGG | + | 32636:14545-14564 | MS.gene011729:intergenic | 15.0% |
| !! | TATATTATATATGAGAACAA+AGG | - | 32636:13781-13800 | MS.gene011729:intron | 15.0% |
| !! | TTATATTTAACCTTAGATAA+CGG | + | 32636:12238-12257 | MS.gene011729:intergenic | 15.0% |
| !!! | AAATTAAATTCATTTTCGTA+TGG | + | 32636:14881-14900 | MS.gene011729:intergenic | 15.0% |
| !!! | AAATTAACTACTTTTCATAA+AGG | - | 32636:13729-13748 | MS.gene011729:intron | 15.0% |
| !!! | AATACATATTAGTACATTTT+TGG | + | 32636:11983-12002 | MS.gene011729:intergenic | 15.0% |
| !!! | AATTAAATTCATTTTCGTAT+GGG | + | 32636:14880-14899 | MS.gene011729:intergenic | 15.0% |
| !!! | ACATAGTTTTATTTTACATT+AGG | + | 32636:15304-15323 | MS.gene011729:intergenic | 15.0% |
| !!! | ACATGTCTTTTTTTTTTTTT+TGG | - | 32636:13304-13323 | MS.gene011729:intron | 15.0% |
| !!! | ATAGTTTTATTTTACATTAG+GGG | + | 32636:15302-15321 | MS.gene011729:intergenic | 15.0% |
| !!! | CATAGTTTTATTTTACATTA+GGG | + | 32636:15303-15322 | MS.gene011729:intergenic | 15.0% |
| !! | AATTCATCTCTATGTAAAAA+AGG | - | 32636:15061-15080 | MS.gene011729:intron | 20.0% |
| !! | AATTGACATATATATTTACC+TGG | + | 32636:15272-15291 | MS.gene011729:intergenic | 20.0% |
| !! | ACAAAATTCTCAATCATATT+AGG | - | 32636:15345-15364 | MS.gene011729:CDS | 20.0% |
| !! | ATAATTTATTCATCCAAACA+TGG | - | 32636:13002-13021 | MS.gene011729:CDS | 20.0% |
| !! | ATCTACTACCTTAATATATA+AGG | - | 32636:12265-12284 | MS.gene011729:CDS | 20.0% |
| !! | GTTTGAATCCTTATATATTA+AGG | + | 32636:12276-12295 | MS.gene011729:intergenic | 20.0% |
| !! | TAAAACTATGTCTAATACAT+TGG | - | 32636:15313-15332 | MS.gene011729:intron | 20.0% |
| !! | TAATTTATTCATCCAAACAT+GGG | - | 32636:13003-13022 | MS.gene011729:CDS | 20.0% |
| !! | TATGACAAGATAAAATAAAG+TGG | + | 32636:12926-12945 | MS.gene011729:intergenic | 20.0% |
| !! | TATTAACATAATTGTATGGA+AGG | + | 32636:14541-14560 | MS.gene011729:intergenic | 20.0% |
| !!! | ACTTGATTTGAATTGTTATT+TGG | + | 32636:12374-12393 | MS.gene011729:intergenic | 20.0% |
| !!! | ATTGTTTTCAACTTATATTC+TGG | - | 32636:12858-12877 | MS.gene011729:intron | 20.0% |
| !!! | TAAACATTTTCTTTTGAATG+TGG | + | 32636:11943-11962 | MS.gene011729:intergenic | 20.0% |
| !!! | TGAAGTCATTTTGTTTTATT+CGG | + | 32636:14985-15004 | MS.gene011729:intergenic | 20.0% |
| !!! | TTGTTTTCAACTTATATTCT+GGG | - | 32636:12859-12878 | MS.gene011729:intron | 20.0% |
| ! | AAACTCTTGTAGATTGAAAA+AGG | - | 32636:14246-14265 | MS.gene011729:intron | 25.0% |
| ! | CGTTAAAATAGCATTAAATG+TGG | + | 32636:13709-13728 | MS.gene011729:intergenic | 25.0% |
| ! | CTGGTTAATTAAACAAAAAG+TGG | + | 32636:13618-13637 | MS.gene011729:intergenic | 25.0% |
| ! | GAATGTGGAAAGAAAATTAA+AGG | + | 32636:11928-11947 | MS.gene011729:intergenic | 25.0% |
| ! | GATAACTAATTAATCTCCTT+TGG | - | 32636:12072-12091 | MS.gene011729:intron | 25.0% |
| ! | GATTTACAATCTTGATCTAA+CGG | + | 32636:13066-13085 | MS.gene011729:intergenic | 25.0% |
| ! | TAAAGATATCACACTAGAAA+TGG | - | 32636:11495-11514 | MS.gene011729:CDS | 25.0% |
| ! | TAAGATAGTTTACTGATAAG+TGG | - | 32636:13211-13230 | MS.gene011729:intron | 25.0% |
| ! | TAATTAGTTATCGACAAAGT+CGG | + | 32636:12064-12083 | MS.gene011729:intergenic | 25.0% |
| ! | TAGACCTGAATAATGTTTAA+GGG | + | 32636:15150-15169 | MS.gene011729:intergenic | 25.0% |
| ! | TATAAGCTATGAAGCATATA+CGG | + | 32636:14140-14159 | MS.gene011729:intergenic | 25.0% |
| ! | TATAATTTCACACCTGATTA+TGG | + | 32636:14582-14601 | MS.gene011729:intergenic | 25.0% |
| ! | TTATTCATATTACCTTTCCA+AGG | + | 32636:14071-14090 | MS.gene011729:intergenic | 25.0% |
| ! | TTTCTTTGTAACTATGTGAT+CGG | - | 32636:12025-12044 | MS.gene011729:intron | 25.0% |
| !! | AGATATTGTTGTTACATGTT+TGG | + | 32636:12452-12471 | MS.gene011729:intergenic | 25.0% |
| !! | ATACTTGTAGATGATTTTGA+TGG | + | 32636:12298-12317 | MS.gene011729:intergenic | 25.0% |
| !! | GGTAATTAATTTTGGATGAT+GGG | - | 32636:13325-13344 | MS.gene011729:intron | 25.0% |
| !! | GTAATTAATTTTGGATGATG+GGG | - | 32636:13326-13345 | MS.gene011729:intron | 25.0% |
| !! | GTGTAAATTAAGAGTATGTT+TGG | - | 32636:12748-12767 | MS.gene011729:CDS | 25.0% |
| !! | TCAAACATGTACAATGATTT+TGG | + | 32636:12504-12523 | MS.gene011729:intergenic | 25.0% |
| !! | TGGTAATTAATTTTGGATGA+TGG | - | 32636:13324-13343 | MS.gene011729:intron | 25.0% |
| !! | TTTTGGTATCAACTATTTTG+AGG | + | 32636:11966-11985 | MS.gene011729:intergenic | 25.0% |
| !!! | ACTTATGTGATCATTTTTGT+TGG | - | 32636:13860-13879 | MS.gene011729:intron | 25.0% |
| !!! | TGAAAAAGGTACTGATAAAT+GGG | - | 32636:14260-14279 | MS.gene011729:intron | 25.0% |
| !!! | TGCATGATTTTGAAAACATT+TGG | + | 32636:13029-13048 | MS.gene011729:intergenic | 25.0% |
| !!! | TTGAAAAAGGTACTGATAAA+TGG | - | 32636:14259-14278 | MS.gene011729:intron | 25.0% |
| AACATAAACACCGTTATCTA+AGG | - | 32636:12225-12244 | MS.gene011729:intron | 30.0% | |
| AACTTCCTCTTCATAATAGA+TGG | - | 32636:12589-12608 | MS.gene011729:CDS | 30.0% | |
| AATAGAAATGAGTGGTTTCT+TGG | - | 32636:14464-14483 | MS.gene011729:intron | 30.0% | |
| AATTTACACTTACAACTGAG+AGG | + | 32636:12737-12756 | MS.gene011729:intergenic | 30.0% | |
| ATAACACATCCTGGTATAAT+AGG | - | 32636:13904-13923 | MS.gene011729:intron | 30.0% | |
| ATAAGAATTGTGGACAATGA+TGG | - | 32636:13381-13400 | MS.gene011729:intron | 30.0% | |
| ATCAGGTGTGAAATTATAAG+AGG | - | 32636:14584-14603 | MS.gene011729:intron | 30.0% | |
| ATCTCAGATCTCACTAAATA+TGG | + | 32636:12110-12129 | MS.gene011729:intergenic | 30.0% | |
| ATGGTCAATTAGATTTCCAA+AGG | + | 32636:12091-12110 | MS.gene011729:intergenic | 30.0% | |
| ATTGACTACATATCCAAGTT+TGG | - | 32636:14794-14813 | MS.gene011729:intron | 30.0% | |
| CAAGTATGTTACATCACAAA+AGG | - | 32636:15086-15105 | MS.gene011729:intron | 30.0% | |
| CTACAAGAGTTTCAAGAAAA+GGG | + | 32636:14238-14257 | MS.gene011729:intergenic | 30.0% | |
| CTATCCCTTAAACATTATTC+AGG | - | 32636:15143-15162 | MS.gene011729:intron | 30.0% | |
| CTATGCTTATTCCATTTAGA+AGG | - | 32636:12143-12162 | MS.gene011729:intron | 30.0% | |
| GATTATGGCACAATAAAAGA+GGG | + | 32636:14567-14586 | MS.gene011729:intergenic | 30.0% | |
| GGAAAAGTCATTGAAATAAG+TGG | - | 32636:13124-13143 | MS.gene011729:CDS | 30.0% | |
| GTAGACCTGAATAATGTTTA+AGG | + | 32636:15151-15170 | MS.gene011729:intergenic | 30.0% | |
| GTTGAAATGATAGATTTCAG+TGG | - | 32636:11652-11671 | MS.gene011729:intron | 30.0% | |
| TAACATAGTTTCCTGATAAG+TGG | - | 32636:13167-13186 | MS.gene011729:intron | 30.0% | |
| TCAAATCAAGTCACTATATG+TGG | - | 32636:12383-12402 | MS.gene011729:CDS | 30.0% | |
| TCACATTGCTAATGTCAAAA+CGG | + | 32636:14112-14131 | MS.gene011729:intergenic | 30.0% | |
| TCATTGTCCACAATTCTTAT+TGG | + | 32636:13381-13400 | MS.gene011729:intergenic | 30.0% | |
| TCTACAAGAGTTTCAAGAAA+AGG | + | 32636:14239-14258 | MS.gene011729:intergenic | 30.0% | |
| TCTAGTGTGATATCTTTACA+AGG | + | 32636:11493-11512 | MS.gene011729:intergenic | 30.0% | |
| TCTAGTTACGTAGATATTTG+TGG | - | 32636:14946-14965 | MS.gene011729:intron | 30.0% | |
| TGATTATGGCACAATAAAAG+AGG | + | 32636:14568-14587 | MS.gene011729:intergenic | 30.0% | |
| TTAACAAGCCAACAAAACAA+TGG | + | 32636:14181-14200 | MS.gene011729:intergenic | 30.0% | |
| TTAGAGTAGAAATGGTAGAT+TGG | - | 32636:12658-12677 | MS.gene011729:CDS | 30.0% | |
| ! | TCTTTTATTGTGCCATAATC+AGG | - | 32636:14567-14586 | MS.gene011729:intron | 30.0% |
| ! | TTGTTGCTTAAATTTCAGAC+TGG | + | 32636:13637-13656 | MS.gene011729:intergenic | 30.0% |
| !! | AAATATTGGGTTGACATGAA+GGG | + | 32636:14648-14667 | MS.gene011729:intergenic | 30.0% |
| !! | TACATAGACCATTGTTTTGT+TGG | - | 32636:14170-14189 | MS.gene011729:intron | 30.0% |
| !! | TGAAGTCTTTAGAGTAGAAA+TGG | - | 32636:12650-12669 | MS.gene011729:CDS | 30.0% |
| !! | TGTGATCATTTTTGTTGGAT+AGG | - | 32636:13865-13884 | MS.gene011729:intron | 30.0% |
| AAAAAGTTGTCTCCTTGGAA+AGG | - | 32636:14056-14075 | MS.gene011729:intron | 35.0% | |
| AAAGCTATCTGGTACTTTGA+AGG | - | 32636:13546-13565 | MS.gene011729:CDS | 35.0% | |
| AAGCTATCTGGTACTTTGAA+GGG | - | 32636:13547-13566 | MS.gene011729:CDS | 35.0% | |
| ACAGAAAAAAGTTGTCTCCT+TGG | - | 32636:14051-14070 | MS.gene011729:intron | 35.0% | |
| ACATTTGACAGAGAAAATGG+AGG | - | 32636:13489-13508 | MS.gene011729:CDS | 35.0% | |
| ACTCATAGTTGACTGATAAG+TGG | - | 32636:13103-13122 | MS.gene011729:CDS | 35.0% | |
| AGACTTAAAGAAGAAGCCAT+GGG | - | 32636:11549-11568 | MS.gene011729:CDS | 35.0% | |
| AGGTGTGAAATTATAAGAGG+AGG | - | 32636:14587-14606 | MS.gene011729:intron | 35.0% | |
| ATAAATGGGAGAAGATTGCA+AGG | - | 32636:14274-14293 | MS.gene011729:intron | 35.0% | |
| ATGTTTAGGAGTTCCATTGA+TGG | + | 32636:13937-13956 | MS.gene011729:intergenic | 35.0% | |
| CAATGGAACTCCTAAACATA+TGG | - | 32636:13938-13957 | MS.gene011729:intron | 35.0% | |
| CCAGTGAATGATTGAAAATG+CGG | + | 32636:12346-12365 | MS.gene011729:intergenic | 35.0% | |
| CCTAAACATATGGAACGAAA+GGG | - | 32636:13948-13967 | MS.gene011729:intron | 35.0% | |
| GAAAGAGATGTTGCAGAAAA+TGG | - | 32636:13970-13989 | MS.gene011729:intron | 35.0% | |
| GAAATGATAGATTTCAGTGG+AGG | - | 32636:11655-11674 | MS.gene011729:intron | 35.0% | |
| GACATAAAGAATCTAAGCAG+AGG | - | 32636:14342-14361 | MS.gene011729:intron | 35.0% | |
| GCAACATTTGACAGAGAAAA+TGG | - | 32636:13486-13505 | MS.gene011729:CDS | 35.0% | |
| GCAGTTGAAATATGCAACTT+GGG | - | 32636:13432-13451 | MS.gene011729:intron | 35.0% | |
| GTCTTCAAATGCACTTATGA+TGG | - | 32636:15519-15538 | MS.gene011729:CDS | 35.0% | |
| TAAATGGGAGAAGATTGCAA+GGG | - | 32636:14275-14294 | MS.gene011729:intron | 35.0% | |
| TAAGTGCATTTGAAGACATC+TGG | + | 32636:15516-15535 | MS.gene011729:intergenic | 35.0% | |
| TAGACTTAAAGAAGAAGCCA+TGG | - | 32636:11548-11567 | MS.gene011729:CDS | 35.0% | |
| TCAAACATTGTCACAACTCA+CGG | + | 32636:12810-12829 | MS.gene011729:intergenic | 35.0% | |
| TCATTGTACATGTTTGACCA+TGG | - | 32636:12507-12526 | MS.gene011729:intron | 35.0% | |
| TCCTAAACATATGGAACGAA+AGG | - | 32636:13947-13966 | MS.gene011729:intron | 35.0% | |
| TCGAATTCGAACCTTCTAAA+TGG | + | 32636:12157-12176 | MS.gene011729:intergenic | 35.0% | |
| TCGTTATGGTTCAAGAATGT+TGG | - | 32636:11519-11538 | MS.gene011729:CDS | 35.0% | |
| TGCAGTTGAAATATGCAACT+TGG | - | 32636:13431-13450 | MS.gene011729:intron | 35.0% | |
| TGGCTTCTTCTTTAAGTCTA+CGG | + | 32636:11548-11567 | MS.gene011729:intergenic | 35.0% | |
| TTAGCTCCTTCTACAAAAAC+AGG | + | 32636:14384-14403 | MS.gene011729:intergenic | 35.0% | |
| ! | AGACATCTGGTTTCTTTACA+AGG | + | 32636:15503-15522 | MS.gene011729:intergenic | 35.0% |
| ! | ATTTTTGTTGGATAGGAGTG+AGG | - | 32636:13872-13891 | MS.gene011729:intron | 35.0% |
| ! | CGCATTTTCAATCATTCACT+GGG | - | 32636:12344-12363 | MS.gene011729:CDS | 35.0% |
| ! | GTCAACCCAATATTTGAGAT+AGG | - | 32636:14653-14672 | MS.gene011729:intron | 35.0% |
| ! | TGTTCACATGGCTTCTTTTT+AGG | + | 32636:12567-12586 | MS.gene011729:intergenic | 35.0% |
| !! | AAAGAGTACCTTACACCAAT+GGG | - | 32636:14614-14633 | MS.gene011729:intron | 35.0% |
| !! | AAAGTACCAGATAGCTTTTG+TGG | + | 32636:13544-13563 | MS.gene011729:intergenic | 35.0% |
| !! | AATATTGGGTTGACATGAAG+GGG | + | 32636:14647-14666 | MS.gene011729:intergenic | 35.0% |
| !! | CAAATATTGGGTTGACATGA+AGG | + | 32636:14649-14668 | MS.gene011729:intergenic | 35.0% |
| !! | TTCTTTTGAGTAGCCAAACT+TGG | + | 32636:14810-14829 | MS.gene011729:intergenic | 35.0% |
| !!! | AATTTTGGATGATGGGGAAA+TGG | - | 32636:13332-13351 | MS.gene011729:intron | 35.0% |
| !!! | AGGAGACAACTTTTTTCTGT+TGG | + | 32636:14051-14070 | MS.gene011729:intergenic | 35.0% |
| !!! | ATTTTGGATGATGGGGAAAT+GGG | - | 32636:13333-13352 | MS.gene011729:intron | 35.0% |
| !!! | GCACTGAGATTTTTTGTGAT+GGG | + | 32636:15552-15571 | MS.gene011729:intergenic | 35.0% |
| !!! | TACCTTCCTGTTTTTGTAGA+AGG | - | 32636:14375-14394 | MS.gene011729:intron | 35.0% |
| !!! | TGGCTTCTTTTTAGGTCTAT+TGG | + | 32636:12559-12578 | MS.gene011729:intergenic | 35.0% |
| AACTACCTCTTCACAATAGG+TGG | - | 32636:11578-11597 | MS.gene011729:CDS | 40.0% | |
| AATAGGAACTGCACCATCAA+TGG | - | 32636:13921-13940 | MS.gene011729:intron | 40.0% | |
| ACAATACCGGGAAGAGAAAA+TGG | - | 32636:14309-14328 | MS.gene011729:intron | 40.0% | |
| ACACTAGAAATGGCTCGTTA+TGG | - | 32636:11505-11524 | MS.gene011729:CDS | 40.0% | |
| ACATGTTTGGCATTACTCTG+AGG | + | 32636:12439-12458 | MS.gene011729:intergenic | 40.0% | |
| ACCTGGTCAAATATAGCTGT+TGG | + | 32636:15255-15274 | MS.gene011729:intergenic | 40.0% | |
| ACTATTAACATCTGCCACAG+GGG | + | 32636:12628-12647 | MS.gene011729:intergenic | 40.0% | |
| AGAGGAAGTTTCTGTTCACA+TGG | + | 32636:12579-12598 | MS.gene011729:intergenic | 40.0% | |
| AGGAACTACCTCTTCACAAT+AGG | - | 32636:11575-11594 | MS.gene011729:CDS | 40.0% | |
| AGGGACAACAAGATAGTAGA+AGG | + | 32636:15173-15192 | MS.gene011729:intergenic | 40.0% | |
| ATACCAGGATGTGTTATACC+TGG | + | 32636:13901-13920 | MS.gene011729:intergenic | 40.0% | |
| CAAACATTGTCACAACTCAC+GGG | + | 32636:12809-12828 | MS.gene011729:intergenic | 40.0% | |
| CAATGTTGCACAAGCATTAG+GGG | + | 32636:15226-15245 | MS.gene011729:intergenic | 40.0% | |
| CAATTCTTATTGGCCCACTA+AGG | + | 32636:13371-13390 | MS.gene011729:intergenic | 40.0% | |
| CACTATTAACATCTGCCACA+GGG | + | 32636:12629-12648 | MS.gene011729:intergenic | 40.0% | |
| CCAATGTTGCACAAGCATTA+GGG | + | 32636:15227-15246 | MS.gene011729:intergenic | 40.0% | |
| CCAGATATTCTTCCTTCACA+GGG | + | 32636:15192-15211 | MS.gene011729:intergenic | 40.0% | |
| CCCTTTCGTTCCATATGTTT+AGG | + | 32636:13951-13970 | MS.gene011729:intergenic | 40.0% | |
| CCTGGTCAAATATAGCTGTT+GGG | + | 32636:15254-15273 | MS.gene011729:intergenic | 40.0% | |
| CTCCTTCTACAAAAACAGGA+AGG | + | 32636:14380-14399 | MS.gene011729:intergenic | 40.0% | |
| CTTATGCCACAAAAGCTATC+TGG | - | 32636:13535-13554 | MS.gene011729:CDS | 40.0% | |
| GAAAACATTTGGCCCATGTT+TGG | + | 32636:13018-13037 | MS.gene011729:intergenic | 40.0% | |
| GAATCTAAGCAGAGGTTCAA+AGG | - | 32636:14350-14369 | MS.gene011729:intron | 40.0% | |
| GCATTAGTGTGGATGAAAGT+GGG | - | 32636:14717-14736 | MS.gene011729:intron | 40.0% | |
| GGCTTCTTCTTTAAGTCTAC+GGG | + | 32636:11547-11566 | MS.gene011729:intergenic | 40.0% | |
| GGTGTATTAGTCCTTTAACC+TGG | + | 32636:13597-13616 | MS.gene011729:intergenic | 40.0% | |
| GTAGAAATGGTAGATTGGAC+TGG | - | 32636:12663-12682 | MS.gene011729:CDS | 40.0% | |
| GTCAAATATAGCTGTTGGGA+TGG | + | 32636:15250-15269 | MS.gene011729:intergenic | 40.0% | |
| GTTTGGCTACTCAAAAGAAC+AGG | - | 32636:14811-14830 | MS.gene011729:intron | 40.0% | |
| TCAGAGTGGTTAGTGTTTGA+GGG | - | 32636:14695-14714 | MS.gene011729:intron | 40.0% | |
| TCCAGATATTCTTCCTTCAC+AGG | + | 32636:15193-15212 | MS.gene011729:intergenic | 40.0% | |
| TCTGAGAATCTTGGTTCAAC+GGG | + | 32636:14680-14699 | MS.gene011729:intergenic | 40.0% | |
| TGGGCAAAAACATGTATGCT+TGG | + | 32636:14861-14880 | MS.gene011729:intergenic | 40.0% | |
| TGTATGCAACACTTGCATCT+AGG | + | 32636:14754-14773 | MS.gene011729:intergenic | 40.0% | |
| TGTGGTGCAATAGAAATGAG+TGG | - | 32636:14456-14475 | MS.gene011729:intron | 40.0% | |
| TTCAACTGCAAGCAAATCTC+CGG | + | 32636:13421-13440 | MS.gene011729:intergenic | 40.0% | |
| TTGAACCAAGATTCTCAGAG+TGG | - | 32636:14681-14700 | MS.gene011729:intron | 40.0% | |
| TTTCCAGGTATAACACATCC+TGG | - | 32636:13895-13914 | MS.gene011729:intron | 40.0% | |
| TTTGACAGAGAAAATGGAGG+TGG | - | 32636:13492-13511 | MS.gene011729:CDS | 40.0% | |
| ! | AAGTGACTTGTCCACTTATC+AGG | + | 32636:13181-13200 | MS.gene011729:intergenic | 40.0% |
| ! | ACTAACCACTCTGAGAATCT+TGG | + | 32636:14689-14708 | MS.gene011729:intergenic | 40.0% |
| ! | ATCTGGTTTCTTTACAAGGC+GGG | + | 32636:15499-15518 | MS.gene011729:intergenic | 40.0% |
| ! | CAGATAGCTTTTGTGGCATA+AGG | + | 32636:13537-13556 | MS.gene011729:intergenic | 40.0% |
| ! | CATCTGGTTTCTTTACAAGG+CGG | + | 32636:15500-15519 | MS.gene011729:intergenic | 40.0% |
| ! | CCGCATTTTCAATCATTCAC+TGG | - | 32636:12343-12362 | MS.gene011729:CDS | 40.0% |
| ! | CTCTGAGAATCTTGGTTCAA+CGG | + | 32636:14681-14700 | MS.gene011729:intergenic | 40.0% |
| ! | TAGTGGGCCAATAAGAATTG+TGG | - | 32636:13371-13390 | MS.gene011729:intron | 40.0% |
| ! | TCTATTGGCACAACTAGTCT+TGG | + | 32636:12544-12563 | MS.gene011729:intergenic | 40.0% |
| ! | TCTGTTGGTAAGTTTGCCAA+GGG | + | 32636:14036-14055 | MS.gene011729:intergenic | 40.0% |
| ! | TTCTGTTGGTAAGTTTGCCA+AGG | + | 32636:14037-14056 | MS.gene011729:intergenic | 40.0% |
| ! | TTTGGCATTACTCTGAGGAA+GGG | + | 32636:12434-12453 | MS.gene011729:intergenic | 40.0% |
| !! | ATGTGGCTTGATGTTTTTGC+AGG | - | 32636:15437-15456 | MS.gene011729:CDS | 40.0% |
| !! | GAAAGAGTACCTTACACCAA+TGG | - | 32636:14613-14632 | MS.gene011729:intron | 40.0% |
| !!! | GGCACTGAGATTTTTTGTGA+TGG | + | 32636:15553-15572 | MS.gene011729:intergenic | 40.0% |
| ACGGGGCCTATCTCAAATAT+TGG | + | 32636:14662-14681 | MS.gene011729:intergenic | 45.0% | |
| AGATATACCTCCAGTTGCAG+AGG | - | 32636:11606-11625 | MS.gene011729:intron | 45.0% | |
| ATACCGGGAAGAGAAAATGG+TGG | - | 32636:14312-14331 | MS.gene011729:intron | 45.0% | |
| CACCTCAGATACCAGGTTAA+AGG | - | 32636:13583-13602 | MS.gene011729:CDS | 45.0% | |
| CCACTATTAACATCTGCCAC+AGG | + | 32636:12630-12649 | MS.gene011729:intergenic | 45.0% | |
| CCCAACAGCTATATTTGACC+AGG | - | 32636:15251-15270 | MS.gene011729:intron | 45.0% | |
| CCCTAATGCTTGTGCAACAT+TGG | - | 32636:15224-15243 | MS.gene011729:intron | 45.0% | |
| CCCTGTGAAGGAAGAATATC+TGG | - | 32636:15189-15208 | MS.gene011729:intron | 45.0% | |
| CCTGTGGCAGATGTTAATAG+TGG | - | 32636:12627-12646 | MS.gene011729:CDS | 45.0% | |
| CGGGGCCTATCTCAAATATT+GGG | + | 32636:14661-14680 | MS.gene011729:intergenic | 45.0% | |
| CTATTAACATCTGCCACAGG+GGG | + | 32636:12627-12646 | MS.gene011729:intergenic | 45.0% | |
| CTCAGAGTGGTTAGTGTTTG+AGG | - | 32636:14694-14713 | MS.gene011729:intron | 45.0% | |
| CTGAGAATCTTGGTTCAACG+GGG | + | 32636:14679-14698 | MS.gene011729:intergenic | 45.0% | |
| GAAGCAGCAAGAACAATACC+GGG | - | 32636:14297-14316 | MS.gene011729:intron | 45.0% | |
| GAAGGAGCTAATCTCAGTAC+AGG | - | 32636:14393-14412 | MS.gene011729:intron | 45.0% | |
| GATGGTGAGGTCTCATTATG+TGG | - | 32636:14438-14457 | MS.gene011729:intron | 45.0% | |
| GCCAATGTTGCACAAGCATT+AGG | + | 32636:15228-15247 | MS.gene011729:intergenic | 45.0% | |
| GCTTATTCACCTCAGATACC+AGG | - | 32636:13576-13595 | MS.gene011729:CDS | 45.0% | |
| GGAAGCAGCAAGAACAATAC+CGG | - | 32636:14296-14315 | MS.gene011729:intron | 45.0% | |
| GGCATTAGTGTGGATGAAAG+TGG | - | 32636:14716-14735 | MS.gene011729:intron | 45.0% | |
| GGTGCAGTTCCTATTATACC+AGG | + | 32636:13916-13935 | MS.gene011729:intergenic | 45.0% | |
| GTCCTTTAACCTGGTATCTG+AGG | + | 32636:13588-13607 | MS.gene011729:intergenic | 45.0% | |
| TACCGGGAAGAGAAAATGGT+GGG | - | 32636:14313-14332 | MS.gene011729:intron | 45.0% | |
| TCAACTGCAAGCAAATCTCC+GGG | + | 32636:13420-13439 | MS.gene011729:intergenic | 45.0% | |
| TCAGTCTCTCAAACTATGCG+AGG | - | 32636:13996-14015 | MS.gene011729:intron | 45.0% | |
| TCGACAAAGTCGGTGAATAC+TGG | + | 32636:12054-12073 | MS.gene011729:intergenic | 45.0% | |
| TTAGTGTGGATGAAAGTGGG+AGG | - | 32636:14720-14739 | MS.gene011729:intron | 45.0% | |
| TTATTGGCCCACTAAGGTGA+TGG | + | 32636:13365-13384 | MS.gene011729:intergenic | 45.0% | |
| ! | CTATCTTGTTGTCCCTGTGA+AGG | - | 32636:15177-15196 | MS.gene011729:intron | 45.0% |
| ! | GAAATGGTAGATTGGACTGG+AGG | - | 32636:12666-12685 | MS.gene011729:CDS | 45.0% |
| ! | GGGTGCCATCTATTATGAAG+AGG | + | 32636:12597-12616 | MS.gene011729:intergenic | 45.0% |
| ! | GTTTGGCATTACTCTGAGGA+AGG | + | 32636:12435-12454 | MS.gene011729:intergenic | 45.0% |
| ! | TCTGCAACTGGAGGTATATC+TGG | + | 32636:11607-11626 | MS.gene011729:intergenic | 45.0% |
| ! | TCTGGTTTCTTTACAAGGCG+GGG | + | 32636:15498-15517 | MS.gene011729:intergenic | 45.0% |
| ! | TTCCCACCATTTTCTCTTCC+CGG | + | 32636:14318-14337 | MS.gene011729:intergenic | 45.0% |
| ! | TTGGCATTACTCTGAGGAAG+GGG | + | 32636:12433-12452 | MS.gene011729:intergenic | 45.0% |
| !! | ACAACTAGTCTTGGAGTTGG+AGG | + | 32636:12535-12554 | MS.gene011729:intergenic | 45.0% |
| !! | AGTGTTTGAGGGCATTAGTG+TGG | - | 32636:14706-14725 | MS.gene011729:intron | 45.0% |
| !! | AAAAAAAAAAAAAAAAACTA+TGG | - | 32636:15113-15132 | MS.gene011729:intron | 5.0% |
| AAAGAAGAAGCCATGGGAGC+AGG | - | 32636:11555-11574 | MS.gene011729:CDS | 50.0% | |
| AGGTGACATGCACTTCTCAC+AGG | - | 32636:14413-14432 | MS.gene011729:intron | 50.0% | |
| ATATGTGGTCCTTCCACCAG+TGG | - | 32636:12398-12417 | MS.gene011729:CDS | 50.0% | |
| ATGCACTTCTCACAGGGTGA+TGG | - | 32636:14420-14439 | MS.gene011729:intron | 50.0% | |
| GGATGCCACCTATTGTGAAG+AGG | + | 32636:11586-11605 | MS.gene011729:intergenic | 50.0% | |
| GGTGACATGCACTTCTCACA+GGG | - | 32636:14414-14433 | MS.gene011729:intron | 50.0% | |
| TCCTTCCACCAGTGGAAAAC+CGG | - | 32636:12406-12425 | MS.gene011729:CDS | 50.0% | |
| TGAAGCCCCATTCATCACCA+GGG | + | 32636:13464-13483 | MS.gene011729:intergenic | 50.0% | |
| TGGATAGGAGTGAGGTTTCC+AGG | - | 32636:13880-13899 | MS.gene011729:intron | 50.0% | |
| ! | ATTACTCTGAGGAAGGGGAC+CGG | + | 32636:12428-12447 | MS.gene011729:intergenic | 50.0% |
| ! | GGTTTTGCATAGCAGACCCT+TGG | - | 32636:14017-14036 | MS.gene011729:intron | 50.0% |
| ! | TCCTCTCCCTGGTGATGAAT+GGG | - | 32636:13455-13474 | MS.gene011729:intron | 50.0% |
| !! | GGCACAACTAGTCTTGGAGT+TGG | + | 32636:12538-12557 | MS.gene011729:intergenic | 50.0% |
| AGAGGTAGTTCCTGCTCCCA+TGG | + | 32636:11568-11587 | MS.gene011729:intergenic | 55.0% | |
| CCAGTTGCAGAGGCTACAAC+TGG | - | 32636:11616-11635 | MS.gene011729:intron | 55.0% | |
| CCAGTTGTAGCCTCTGCAAC+TGG | + | 32636:11619-11638 | MS.gene011729:intergenic | 55.0% | |
| GCCAGGTCCATCACCTTAGT+GGG | - | 32636:13355-13374 | MS.gene011729:intron | 55.0% | |
| GGGTTGACATGAAGGGGAGT+GGG | + | 32636:14641-14660 | MS.gene011729:intergenic | 55.0% | |
| GGTTGACATGAAGGGGAGTG+GGG | + | 32636:14640-14659 | MS.gene011729:intergenic | 55.0% | |
| GTGAAGCCCCATTCATCACC+AGG | + | 32636:13465-13484 | MS.gene011729:intergenic | 55.0% | |
| GTTGTAGCCTCTGCAACTGG+AGG | + | 32636:11616-11635 | MS.gene011729:intergenic | 55.0% | |
| TGCAAGCAAATCTCCGGGCT+GGG | + | 32636:13415-13434 | MS.gene011729:intergenic | 55.0% | |
| TTTACAAGGCGGGGTCCAAC+TGG | + | 32636:15489-15508 | MS.gene011729:intergenic | 55.0% | |
| ! | CCTCTCCCTGGTGATGAATG+GGG | - | 32636:13456-13475 | MS.gene011729:intron | 55.0% |
| ! | CTTCTCACAGGGTGATGGTG+AGG | - | 32636:14425-14444 | MS.gene011729:intron | 55.0% |
| ! | GTCCTCTCCCTGGTGATGAA+TGG | - | 32636:13454-13473 | MS.gene011729:intron | 55.0% |
| ! | TGGGTTGACATGAAGGGGAG+TGG | + | 32636:14642-14661 | MS.gene011729:intergenic | 55.0% |
| !! | ACCGGTTTTCCACTGGTGGA+AGG | + | 32636:12410-12429 | MS.gene011729:intergenic | 55.0% |
| !! | TCTTGGAGTTGGAGGTGCCA+TGG | + | 32636:12527-12546 | MS.gene011729:intergenic | 55.0% |
| CCCCATTCATCACCAGGGAG+AGG | + | 32636:13459-13478 | MS.gene011729:intergenic | 60.0% | |
| CTGCAAGCAAATCTCCGGGC+TGG | + | 32636:13416-13435 | MS.gene011729:intergenic | 60.0% | |
| GAGTGGGGCCCATTGGTGTA+AGG | + | 32636:14625-14644 | MS.gene011729:intergenic | 60.0% | |
| GGCCAGGTCCATCACCTTAG+TGG | - | 32636:13354-13373 | MS.gene011729:intron | 60.0% | |
| TGCAACTTGGGTCCTCTCCC+TGG | - | 32636:13444-13463 | MS.gene011729:intron | 60.0% | |
| ! | CTGCCACAGGGGGTATGTCA+GGG | + | 32636:12617-12636 | MS.gene011729:intergenic | 60.0% |
| ! | TCTGCCACAGGGGGTATGTC+AGG | + | 32636:12618-12637 | MS.gene011729:intergenic | 60.0% |
| !! | GAAGGGGACCGGTTTTCCAC+TGG | + | 32636:12417-12436 | MS.gene011729:intergenic | 60.0% |
| !! | GCCCACTAAGGTGATGGACC+TGG | + | 32636:13359-13378 | MS.gene011729:intergenic | 60.0% |
| !! | GGATGATGGGGAAATGGGCC+AGG | - | 32636:13338-13357 | MS.gene011729:intron | 60.0% |
| GATGGTATCCCAGCCCAGCC+CGG | - | 32636:13399-13418 | MS.gene011729:intron | 65.0% | |
| GCACCCTGACATACCCCCTG+TGG | - | 32636:12611-12630 | MS.gene011729:CDS | 65.0% | |
| TGAAGGGGAGTGGGGCCCAT+TGG | + | 32636:14632-14651 | MS.gene011729:intergenic | 65.0% | |
| ! | AGCAAATCTCCGGGCTGGGC+TGG | + | 32636:13411-13430 | MS.gene011729:intergenic | 65.0% |
| ! | GCAAATCTCCGGGCTGGGCT+GGG | + | 32636:13410-13429 | MS.gene011729:intergenic | 65.0% |
| !! | GGGGACCGGTTTTCCACTGG+TGG | + | 32636:12414-12433 | MS.gene011729:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 32636 | gene | 11484 | 15581 | 11484 | ID=MS.gene011729 |
| 32636 | mRNA | 11484 | 15581 | 11484 | ID=MS.gene011729.t1;Parent=MS.gene011729 |
| 32636 | exon | 15333 | 15581 | 15333 | ID=MS.gene011729.t1.exon1;Parent=MS.gene011729.t1 |
| 32636 | CDS | 15333 | 15581 | 15333 | ID=cds.MS.gene011729.t1;Parent=MS.gene011729.t1 |
| 32636 | exon | 13468 | 13705 | 13468 | ID=MS.gene011729.t1.exon2;Parent=MS.gene011729.t1 |
| 32636 | CDS | 13468 | 13705 | 13468 | ID=cds.MS.gene011729.t1;Parent=MS.gene011729.t1 |
| 32636 | exon | 12988 | 13178 | 12988 | ID=MS.gene011729.t1.exon3;Parent=MS.gene011729.t1 |
| 32636 | CDS | 12988 | 13178 | 12988 | ID=cds.MS.gene011729.t1;Parent=MS.gene011729.t1 |
| 32636 | exon | 12572 | 12807 | 12572 | ID=MS.gene011729.t1.exon4;Parent=MS.gene011729.t1 |
| 32636 | CDS | 12572 | 12807 | 12572 | ID=cds.MS.gene011729.t1;Parent=MS.gene011729.t1 |
| 32636 | exon | 12233 | 12476 | 12233 | ID=MS.gene011729.t1.exon5;Parent=MS.gene011729.t1 |
| 32636 | CDS | 12233 | 12476 | 12233 | ID=cds.MS.gene011729.t1;Parent=MS.gene011729.t1 |
| 32636 | exon | 11793 | 11900 | 11793 | ID=MS.gene011729.t1.exon6;Parent=MS.gene011729.t1 |
| 32636 | CDS | 11793 | 11900 | 11793 | ID=cds.MS.gene011729.t1;Parent=MS.gene011729.t1 |
| 32636 | exon | 11484 | 11606 | 11484 | ID=MS.gene011729.t1.exon7;Parent=MS.gene011729.t1 |
| 32636 | CDS | 11484 | 11606 | 11484 | ID=cds.MS.gene011729.t1;Parent=MS.gene011729.t1 |
| Gene Sequence |
| Protein sequence |
