Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061115.t1 | XP_013457492.1 | 98.7 | 452 | 6 | 0 | 1 | 452 | 1 | 452 | 2.60E-270 | 940.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061115.t1 | Q50228 | 50.1 | 427 | 186 | 6 | 7 | 433 | 2 | 401 | 4.4e-125 | 449.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061115.t1 | B7FKV4 | 98.7 | 452 | 6 | 0 | 1 | 452 | 1 | 452 | 1.9e-270 | 940.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061115 | MS.gene44475 | 0.983476 | 7.58E-158 | -1.69E-46 |
| MS.gene061115 | MS.gene61548 | 0.907613 | 4.20E-81 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene061115 | MS.gene44475 | PPI |
| MS.gene061115 | MS.gene011731 | PPI |
| MS.gene011729 | MS.gene061115 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061115.t1 | MTR_4g095660 | 98.673 | 452 | 6 | 0 | 1 | 452 | 1 | 452 | 0.0 | 922 |
| MS.gene061115.t1 | MTR_4g095660 | 93.363 | 452 | 30 | 0 | 1 | 452 | 1 | 452 | 0.0 | 872 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061115.t1 | AT4G37560 | 81.858 | 452 | 82 | 0 | 1 | 452 | 1 | 452 | 0.0 | 785 |
| MS.gene061115.t1 | AT4G37550 | 81.637 | 452 | 83 | 0 | 1 | 452 | 1 | 452 | 0.0 | 764 |
| MS.gene061115.t1 | AT4G37550 | 78.540 | 452 | 77 | 1 | 1 | 452 | 1 | 432 | 0.0 | 724 |
| MS.gene061115.t1 | AT4G37560 | 82.524 | 412 | 72 | 0 | 1 | 412 | 1 | 412 | 0.0 | 724 |
| MS.gene061115.t1 | AT4G37550 | 81.796 | 412 | 75 | 0 | 1 | 412 | 1 | 412 | 0.0 | 699 |
| MS.gene061115.t1 | AT4G37550 | 80.263 | 380 | 75 | 0 | 1 | 380 | 1 | 380 | 0.0 | 631 |
| MS.gene061115.t1 | AT4G37550 | 85.099 | 302 | 45 | 0 | 151 | 452 | 1 | 302 | 0.0 | 542 |
| MS.gene061115.t1 | AT4G37550 | 77.627 | 295 | 66 | 0 | 1 | 295 | 1 | 295 | 9.78e-167 | 472 |
Find 0 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAAAAAAAAAAACTA+TGG | - | 32638:27010-27029 | MS.gene061115:intron | 10.0% |
| !!! | TTTTTTTTGGTAATTAATTT+TGG | - | 32638:25216-25235 | MS.gene061115:intron | 10.0% |
| !! | AACTTTAAATAATAGTTATG+TGG | - | 32638:27317-27336 | MS.gene061115:CDS | 15.0% |
| !! | ATATTATATATGAGAACAAA+GGG | - | 32638:25681-25700 | MS.gene061115:intron | 15.0% |
| !! | GTATTATTAACATAATTGTA+TGG | + | 32638:26444-26463 | None:intergenic | 15.0% |
| !! | TATATTATATATGAGAACAA+AGG | - | 32638:25680-25699 | MS.gene061115:intron | 15.0% |
| !! | TTATATTTAACCTTAGATAA+CGG | + | 32638:24138-24157 | None:intergenic | 15.0% |
| !!! | AAATTAAATTCATTTTCGTA+TGG | + | 32638:26780-26799 | None:intergenic | 15.0% |
| !!! | AAATTAACTACTTTTCATAA+AGG | - | 32638:25628-25647 | MS.gene061115:intron | 15.0% |
| !!! | AATTAAATTCATTTTCGTAT+GGG | + | 32638:26779-26798 | None:intergenic | 15.0% |
| !!! | ACATAGTTTTATTTTACATT+AGG | + | 32638:27201-27220 | None:intergenic | 15.0% |
| !!! | ATAGTTTTATTTTACATTAG+GGG | + | 32638:27199-27218 | None:intergenic | 15.0% |
| !!! | CATAGTTTTATTTTACATTA+GGG | + | 32638:27200-27219 | None:intergenic | 15.0% |
| !!! | TAAACATTTTCTTTTGAATA+TGG | + | 32638:23822-23841 | None:intergenic | 15.0% |
| !!! | TTTTGATAAAATAAAAAAGC+AGG | + | 32638:23756-23775 | None:intergenic | 15.0% |
| !! | AATTCATCTCTATGTAAAAA+AGG | - | 32638:26960-26979 | MS.gene061115:intron | 20.0% |
| !! | AATTGACATATATATTTACC+TGG | + | 32638:27169-27188 | None:intergenic | 20.0% |
| !! | ACAAAATTCTCAATCATATT+AGG | - | 32638:27242-27261 | MS.gene061115:intron | 20.0% |
| !! | ATAATTTATTCATCCAAACA+TGG | - | 32638:24903-24922 | MS.gene061115:CDS | 20.0% |
| !! | ATCTACTACCTTAATATATA+AGG | - | 32638:24165-24184 | MS.gene061115:CDS | 20.0% |
| !! | GAATATGGAAAGAAAATTAA+AGG | + | 32638:23807-23826 | None:intergenic | 20.0% |
| !! | GTTTGAATCCTTATATATTA+AGG | + | 32638:24176-24195 | None:intergenic | 20.0% |
| !! | TAAAACTATGTCTAATACAT+TGG | - | 32638:27210-27229 | MS.gene061115:intron | 20.0% |
| !! | TAATTTATTCATCCAAACAT+GGG | - | 32638:24904-24923 | MS.gene061115:CDS | 20.0% |
| !! | TATGACAAGATAAAATAAAG+TGG | + | 32638:24827-24846 | None:intergenic | 20.0% |
| !! | TATTAACATAATTGTATGGA+AGG | + | 32638:26440-26459 | None:intergenic | 20.0% |
| !!! | ACACATGTCTTTTTTTTTTT+TGG | - | 32638:25203-25222 | MS.gene061115:intron | 20.0% |
| !!! | ACTTGATTTGAATTGTTATT+TGG | + | 32638:24274-24293 | None:intergenic | 20.0% |
| !!! | ATTGTTTTCAACTTATATTC+TGG | - | 32638:24759-24778 | MS.gene061115:intron | 20.0% |
| !!! | TGAAGTCATTTTGTTTTATT+CGG | + | 32638:26884-26903 | None:intergenic | 20.0% |
| !!! | TTGTTTTCAACTTATATTCT+GGG | - | 32638:24760-24779 | MS.gene061115:intron | 20.0% |
| ! | AAACTCTTGTAGATTGAAAA+AGG | - | 32638:26145-26164 | MS.gene061115:intron | 25.0% |
| ! | CGTTAAAATAGCATTAAATG+TGG | + | 32638:25608-25627 | None:intergenic | 25.0% |
| ! | CTGGTTAATTAAACAAAAAG+TGG | + | 32638:25517-25536 | None:intergenic | 25.0% |
| ! | GATAACTAATTAATCTCCTT+TGG | - | 32638:23972-23991 | MS.gene061115:intron | 25.0% |
| ! | GATTTACAATCTTGATCTAA+CGG | + | 32638:24967-24986 | None:intergenic | 25.0% |
| ! | TAACATAGTTTACTGATAAG+TGG | - | 32638:25112-25131 | MS.gene061115:intron | 25.0% |
| ! | TAATTAGTTATCGACAAAGT+CGG | + | 32638:23964-23983 | None:intergenic | 25.0% |
| ! | TAGACCTGAATAATGTTTAA+GGG | + | 32638:27047-27066 | None:intergenic | 25.0% |
| ! | TATAAGCTATGAAGCATATA+CGG | + | 32638:26039-26058 | None:intergenic | 25.0% |
| ! | TATAATTTCACACCTGATTA+TGG | + | 32638:26481-26500 | None:intergenic | 25.0% |
| ! | TTATTCATATTACCTTTCCA+AGG | + | 32638:25970-25989 | None:intergenic | 25.0% |
| !! | AAAAATAACAAAGTACCAGT+TGG | - | 32638:27368-27387 | MS.gene061115:CDS | 25.0% |
| !! | AGATATTGTTGTTACATGTT+TGG | + | 32638:24352-24371 | None:intergenic | 25.0% |
| !! | ATACTTGTAGATGATTTTGA+TGG | + | 32638:24198-24217 | None:intergenic | 25.0% |
| !! | GGTAATTAATTTTGGATGAT+GGG | - | 32638:25224-25243 | MS.gene061115:intron | 25.0% |
| !! | GTAATTAATTTTGGATGATG+GGG | - | 32638:25225-25244 | MS.gene061115:intron | 25.0% |
| !! | GTGTAAATTAAGAGTATGTT+TGG | - | 32638:24649-24668 | MS.gene061115:CDS | 25.0% |
| !! | TCAAACATGTACAATGATTT+TGG | + | 32638:24404-24423 | None:intergenic | 25.0% |
| !! | TCATATAGTGTGTATGTTTT+TGG | + | 32638:23862-23881 | None:intergenic | 25.0% |
| !! | TGGTAATTAATTTTGGATGA+TGG | - | 32638:25223-25242 | MS.gene061115:intron | 25.0% |
| !!! | ACTGGTACTTTGTTATTTTT+TGG | + | 32638:27368-27387 | None:intergenic | 25.0% |
| !!! | ACTTATGTGATCATTTTTGT+TGG | - | 32638:25759-25778 | MS.gene061115:intron | 25.0% |
| !!! | TGAAAAAGGTACTGATAAAT+GGG | - | 32638:26159-26178 | MS.gene061115:intron | 25.0% |
| !!! | TGCATGATTTTGAAAACATT+TGG | + | 32638:24930-24949 | None:intergenic | 25.0% |
| !!! | TTGAAAAAGGTACTGATAAA+TGG | - | 32638:26158-26177 | MS.gene061115:intron | 25.0% |
| AACATAAACACCGTTATCTA+AGG | - | 32638:24125-24144 | MS.gene061115:intron | 30.0% | |
| AACTTCCTCTTCATAATAGA+TGG | - | 32638:24490-24509 | MS.gene061115:CDS | 30.0% | |
| AATAGAAATGAGTGGTTTCT+TGG | - | 32638:26363-26382 | MS.gene061115:intron | 30.0% | |
| AATTTACACTTACAACTGAG+AGG | + | 32638:24638-24657 | None:intergenic | 30.0% | |
| ATAACACATCCTGGTATAAT+AGG | - | 32638:25803-25822 | MS.gene061115:intron | 30.0% | |
| ATAAGAATTGTGGACAATGA+TGG | - | 32638:25280-25299 | MS.gene061115:intron | 30.0% | |
| ATCAGGTGTGAAATTATAAG+AGG | - | 32638:26483-26502 | MS.gene061115:intron | 30.0% | |
| ATCTCAGATCTCACTAAATA+TGG | + | 32638:24010-24029 | None:intergenic | 30.0% | |
| ATGGTCAATTAGATTTCCAA+AGG | + | 32638:23991-24010 | None:intergenic | 30.0% | |
| ATTGACTACATATCCAAGTT+TGG | - | 32638:26693-26712 | MS.gene061115:intron | 30.0% | |
| CAAGTATGTTACATCACAAA+AGG | - | 32638:26985-27004 | MS.gene061115:intron | 30.0% | |
| CTACAAGAGTTTCAAGAAAA+GGG | + | 32638:26137-26156 | None:intergenic | 30.0% | |
| CTATCCCTTAAACATTATTC+AGG | - | 32638:27040-27059 | MS.gene061115:intron | 30.0% | |
| CTATGCTTATTCCATTTAGA+AGG | - | 32638:24043-24062 | MS.gene061115:intron | 30.0% | |
| GATTATGGCACAATAAAAGA+GGG | + | 32638:26466-26485 | None:intergenic | 30.0% | |
| GGAAAAGTCATTGAAATAAG+TGG | - | 32638:25025-25044 | MS.gene061115:CDS | 30.0% | |
| GTAGACCTGAATAATGTTTA+AGG | + | 32638:27048-27067 | None:intergenic | 30.0% | |
| GTTGAAATGATAGATTTCAG+TGG | - | 32638:23530-23549 | MS.gene061115:intron | 30.0% | |
| TAACATAGTTTCCTGATAAG+TGG | - | 32638:25068-25087 | MS.gene061115:intron | 30.0% | |
| TCAAATCAAGTCACTATATG+TGG | - | 32638:24283-24302 | MS.gene061115:CDS | 30.0% | |
| TCACATTGCTAATGTCAAAA+CGG | + | 32638:26011-26030 | None:intergenic | 30.0% | |
| TCATTGTCCACAATTCTTAT+TGG | + | 32638:25280-25299 | None:intergenic | 30.0% | |
| TCTACAAGAGTTTCAAGAAA+AGG | + | 32638:26138-26157 | None:intergenic | 30.0% | |
| TCTAGTTACGTAGATATTTG+TGG | - | 32638:26845-26864 | MS.gene061115:intron | 30.0% | |
| TGATTATGGCACAATAAAAG+AGG | + | 32638:26467-26486 | None:intergenic | 30.0% | |
| TTAACAAGCCAACAAAACAA+TGG | + | 32638:26080-26099 | None:intergenic | 30.0% | |
| TTAGAGTAGAAATGGTAGAT+TGG | - | 32638:24559-24578 | MS.gene061115:CDS | 30.0% | |
| TTGCTTTGTAACTATGTGAT+CGG | - | 32638:23925-23944 | MS.gene061115:intron | 30.0% | |
| ! | TCTTTTATTGTGCCATAATC+AGG | - | 32638:26466-26485 | MS.gene061115:intron | 30.0% |
| ! | TTGTTGCTTAAATTTCAGAC+TGG | + | 32638:25536-25555 | None:intergenic | 30.0% |
| !! | AAATATTGGGTTGACATGAA+GGG | + | 32638:26547-26566 | None:intergenic | 30.0% |
| !! | TACATAGACCATTGTTTTGT+TGG | - | 32638:26069-26088 | MS.gene061115:intron | 30.0% |
| !! | TGAAGTCTTTAGAGTAGAAA+TGG | - | 32638:24551-24570 | MS.gene061115:CDS | 30.0% |
| !! | TGTGATCATTTTTGTTGGAT+AGG | - | 32638:25764-25783 | MS.gene061115:intron | 30.0% |
| AAAAAGTTGTCTCCTTGGAA+AGG | - | 32638:25955-25974 | MS.gene061115:intron | 35.0% | |
| AAAGCTATCTGGTACTTTGA+AGG | - | 32638:25445-25464 | MS.gene061115:CDS | 35.0% | |
| AAGCTATCTGGTACTTTGAA+GGG | - | 32638:25446-25465 | MS.gene061115:CDS | 35.0% | |
| ACAGAAAAAAGTTGTCTCCT+TGG | - | 32638:25950-25969 | MS.gene061115:intron | 35.0% | |
| ACATTTGACAGAGAAAATGG+AGG | - | 32638:25388-25407 | MS.gene061115:CDS | 35.0% | |
| ACTCATAGTTGACTGATAAG+TGG | - | 32638:25004-25023 | MS.gene061115:CDS | 35.0% | |
| AGACTTAAAGAAGAAGCCAT+GGG | - | 32638:23427-23446 | MS.gene061115:CDS | 35.0% | |
| AGGTGTGAAATTATAAGAGG+AGG | - | 32638:26486-26505 | MS.gene061115:intron | 35.0% | |
| ATAAATGGGAGAAGATTGCA+AGG | - | 32638:26173-26192 | MS.gene061115:intron | 35.0% | |
| ATGTTTAGGAGTTCCATTGA+TGG | + | 32638:25836-25855 | None:intergenic | 35.0% | |
| CAATGGAACTCCTAAACATA+TGG | - | 32638:25837-25856 | MS.gene061115:intron | 35.0% | |
| CCAGTGAATGATTGAAAATG+CGG | + | 32638:24246-24265 | None:intergenic | 35.0% | |
| CCTAAACATATGGAACGAAA+GGG | - | 32638:25847-25866 | MS.gene061115:intron | 35.0% | |
| GAAAGAGATGTTGCAGAAAA+TGG | - | 32638:25869-25888 | MS.gene061115:intron | 35.0% | |
| GAAATGATAGATTTCAGTGG+AGG | - | 32638:23533-23552 | MS.gene061115:intron | 35.0% | |
| GACATAAAGAATCTAAGCAG+AGG | - | 32638:26241-26260 | MS.gene061115:intron | 35.0% | |
| GCAACATTTGACAGAGAAAA+TGG | - | 32638:25385-25404 | MS.gene061115:CDS | 35.0% | |
| GCAGTTGAAATATGCAACTT+GGG | - | 32638:25331-25350 | MS.gene061115:intron | 35.0% | |
| GTCTTCAAATGCACTTATGA+TGG | - | 32638:27416-27435 | MS.gene061115:CDS | 35.0% | |
| TAAATGGGAGAAGATTGCAA+GGG | - | 32638:26174-26193 | MS.gene061115:intron | 35.0% | |
| TAAGTGCATTTGAAGACATC+TGG | + | 32638:27413-27432 | None:intergenic | 35.0% | |
| TAGACTTAAAGAAGAAGCCA+TGG | - | 32638:23426-23445 | MS.gene061115:CDS | 35.0% | |
| TCAAACATTGTCACAACTCA+CGG | + | 32638:24711-24730 | None:intergenic | 35.0% | |
| TCATTGTACATGTTTGACCA+TGG | - | 32638:24407-24426 | MS.gene061115:intron | 35.0% | |
| TCCTAAACATATGGAACGAA+AGG | - | 32638:25846-25865 | MS.gene061115:intron | 35.0% | |
| TCGAATTCGAACCTTCTAAA+TGG | + | 32638:24057-24076 | None:intergenic | 35.0% | |
| TCGTTATGGTTCAAGAATGT+TGG | - | 32638:23397-23416 | MS.gene061115:CDS | 35.0% | |
| TGCAGTTGAAATATGCAACT+TGG | - | 32638:25330-25349 | MS.gene061115:intron | 35.0% | |
| TGGCTTCTTCTTTAAGTCTA+CGG | + | 32638:23426-23445 | None:intergenic | 35.0% | |
| TTAGCTCCTTCTACAAAAAC+AGG | + | 32638:26283-26302 | None:intergenic | 35.0% | |
| ! | AGACATCTGGTTTCTTTACA+AGG | + | 32638:27400-27419 | None:intergenic | 35.0% |
| ! | ATTTTTGTTGGATAGGAGTG+AGG | - | 32638:25771-25790 | MS.gene061115:intron | 35.0% |
| ! | CGCATTTTCAATCATTCACT+GGG | - | 32638:24244-24263 | MS.gene061115:CDS | 35.0% |
| ! | GTCAACCCAATATTTGAGAT+AGG | - | 32638:26552-26571 | MS.gene061115:intron | 35.0% |
| !! | AAAGAGTACCTTACACCAAT+GGG | - | 32638:26513-26532 | MS.gene061115:intron | 35.0% |
| !! | AAAGTACCAGATAGCTTTTG+TGG | + | 32638:25443-25462 | None:intergenic | 35.0% |
| !! | AATATTGGGTTGACATGAAG+GGG | + | 32638:26546-26565 | None:intergenic | 35.0% |
| !! | CAAATATTGGGTTGACATGA+AGG | + | 32638:26548-26567 | None:intergenic | 35.0% |
| !! | TTCTTTTGAGTAGCCAAACT+TGG | + | 32638:26709-26728 | None:intergenic | 35.0% |
| !!! | AATTTTGGATGATGGGGAAA+TGG | - | 32638:25231-25250 | MS.gene061115:intron | 35.0% |
| !!! | AGGAGACAACTTTTTTCTGT+TGG | + | 32638:25950-25969 | None:intergenic | 35.0% |
| !!! | ATTTTGGATGATGGGGAAAT+GGG | - | 32638:25232-25251 | MS.gene061115:intron | 35.0% |
| !!! | GCACTGAGATTTTTTGTGAT+GGG | + | 32638:27449-27468 | None:intergenic | 35.0% |
| !!! | GGCTTCTTTTTTAGGTCTAT+TGG | + | 32638:24459-24478 | None:intergenic | 35.0% |
| !!! | GTTCACATGGCTTCTTTTTT+AGG | + | 32638:24467-24486 | None:intergenic | 35.0% |
| !!! | TACCTTCCTGTTTTTGTAGA+AGG | - | 32638:26274-26293 | MS.gene061115:intron | 35.0% |
| AACTACCTCTTCACAATAGG+TGG | - | 32638:23456-23475 | MS.gene061115:CDS | 40.0% | |
| AATAGGAACTGCACCATCAA+TGG | - | 32638:25820-25839 | MS.gene061115:intron | 40.0% | |
| ACAATACCGGGAAGAGAAAA+TGG | - | 32638:26208-26227 | MS.gene061115:intron | 40.0% | |
| ACATGTTTGGCATTACTCTG+AGG | + | 32638:24339-24358 | None:intergenic | 40.0% | |
| ACCTGGTCAAATATAGCTGT+TGG | + | 32638:27152-27171 | None:intergenic | 40.0% | |
| ACTATTAACATCTGCCACAG+GGG | + | 32638:24529-24548 | None:intergenic | 40.0% | |
| AGAGGAAGTTTCTGTTCACA+TGG | + | 32638:24480-24499 | None:intergenic | 40.0% | |
| AGGAACTACCTCTTCACAAT+AGG | - | 32638:23453-23472 | MS.gene061115:CDS | 40.0% | |
| AGGGACAACAAGATAGTAGA+AGG | + | 32638:27070-27089 | None:intergenic | 40.0% | |
| ATACCAGGATGTGTTATACC+TGG | + | 32638:25800-25819 | None:intergenic | 40.0% | |
| CAAACATTGTCACAACTCAC+GGG | + | 32638:24710-24729 | None:intergenic | 40.0% | |
| CAATGTTGCACAAGCATTAG+GGG | + | 32638:27123-27142 | None:intergenic | 40.0% | |
| CAATTCTTATTGGCCCACTA+AGG | + | 32638:25270-25289 | None:intergenic | 40.0% | |
| CACTATTAACATCTGCCACA+GGG | + | 32638:24530-24549 | None:intergenic | 40.0% | |
| CCAATGTTGCACAAGCATTA+GGG | + | 32638:27124-27143 | None:intergenic | 40.0% | |
| CCAGATATTCTTCCTTCACA+GGG | + | 32638:27089-27108 | None:intergenic | 40.0% | |
| CCCTTTCGTTCCATATGTTT+AGG | + | 32638:25850-25869 | None:intergenic | 40.0% | |
| CCTGGTCAAATATAGCTGTT+GGG | + | 32638:27151-27170 | None:intergenic | 40.0% | |
| CTCCTTCTACAAAAACAGGA+AGG | + | 32638:26279-26298 | None:intergenic | 40.0% | |
| CTTATGCCACAAAAGCTATC+TGG | - | 32638:25434-25453 | MS.gene061115:CDS | 40.0% | |
| GAAAACATTTGGCCCATGTT+TGG | + | 32638:24919-24938 | None:intergenic | 40.0% | |
| GAATCTAAGCAGAGGTTCAA+AGG | - | 32638:26249-26268 | MS.gene061115:intron | 40.0% | |
| GCATTAGTGTGGATGAAAGT+GGG | - | 32638:26616-26635 | MS.gene061115:intron | 40.0% | |
| GGCTTCTTCTTTAAGTCTAC+GGG | + | 32638:23425-23444 | None:intergenic | 40.0% | |
| GGTGTATTAGTCCTTTAACC+TGG | + | 32638:25496-25515 | None:intergenic | 40.0% | |
| GTAGAAATGGTAGATTGGAC+TGG | - | 32638:24564-24583 | MS.gene061115:CDS | 40.0% | |
| GTCAAATATAGCTGTTGGGA+TGG | + | 32638:27147-27166 | None:intergenic | 40.0% | |
| GTTTGGCTACTCAAAAGAAC+AGG | - | 32638:26710-26729 | MS.gene061115:intron | 40.0% | |
| TCAGAGTGGTTAGTGTTTGA+GGG | - | 32638:26594-26613 | MS.gene061115:intron | 40.0% | |
| TCCAGATATTCTTCCTTCAC+AGG | + | 32638:27090-27109 | None:intergenic | 40.0% | |
| TCTGAGAATCTTGGTTCAAC+GGG | + | 32638:26579-26598 | None:intergenic | 40.0% | |
| TGGGCAAAAACATGTATGCT+TGG | + | 32638:26760-26779 | None:intergenic | 40.0% | |
| TGTATGCAACACTTGCATCT+AGG | + | 32638:26653-26672 | None:intergenic | 40.0% | |
| TGTGGTGCAATAGAAATGAG+TGG | - | 32638:26355-26374 | MS.gene061115:intron | 40.0% | |
| TTCAACTGCAAGCAAATCTC+CGG | + | 32638:25320-25339 | None:intergenic | 40.0% | |
| TTGAACCAAGATTCTCAGAG+TGG | - | 32638:26580-26599 | MS.gene061115:intron | 40.0% | |
| TTTCCAGGTATAACACATCC+TGG | - | 32638:25794-25813 | MS.gene061115:intron | 40.0% | |
| TTTGACAGAGAAAATGGAGG+TGG | - | 32638:25391-25410 | MS.gene061115:CDS | 40.0% | |
| ! | AAGTGACTTGTCCACTTATC+AGG | + | 32638:25082-25101 | None:intergenic | 40.0% |
| ! | ACTAACCACTCTGAGAATCT+TGG | + | 32638:26588-26607 | None:intergenic | 40.0% |
| ! | ATCTGGTTTCTTTACAAGGC+GGG | + | 32638:27396-27415 | None:intergenic | 40.0% |
| ! | CAGATAGCTTTTGTGGCATA+AGG | + | 32638:25436-25455 | None:intergenic | 40.0% |
| ! | CATCTGGTTTCTTTACAAGG+CGG | + | 32638:27397-27416 | None:intergenic | 40.0% |
| ! | CCGCATTTTCAATCATTCAC+TGG | - | 32638:24243-24262 | MS.gene061115:CDS | 40.0% |
| ! | CTCTGAGAATCTTGGTTCAA+CGG | + | 32638:26580-26599 | None:intergenic | 40.0% |
| ! | TAGTGGGCCAATAAGAATTG+TGG | - | 32638:25270-25289 | MS.gene061115:intron | 40.0% |
| ! | TCTATTGGCACAACTAGTCT+TGG | + | 32638:24444-24463 | None:intergenic | 40.0% |
| ! | TCTGTTGGTAAGTTTGCCAA+GGG | + | 32638:25935-25954 | None:intergenic | 40.0% |
| ! | TTCTGTTGGTAAGTTTGCCA+AGG | + | 32638:25936-25955 | None:intergenic | 40.0% |
| ! | TTTCCACCATTTTCTCTTCC+CGG | + | 32638:26217-26236 | None:intergenic | 40.0% |
| ! | TTTGGCATTACTCTGAGGAA+GGG | + | 32638:24334-24353 | None:intergenic | 40.0% |
| !! | ATGTGGCTTGATGTTTTTGC+AGG | - | 32638:27334-27353 | MS.gene061115:CDS | 40.0% |
| !! | GAAAGAGTACCTTACACCAA+TGG | - | 32638:26512-26531 | MS.gene061115:intron | 40.0% |
| !!! | GGCACTGAGATTTTTTGTGA+TGG | + | 32638:27450-27469 | None:intergenic | 40.0% |
| ACGGGGCCTATCTCAAATAT+TGG | + | 32638:26561-26580 | None:intergenic | 45.0% | |
| AGATATACCTCCAGTTGCAG+AGG | - | 32638:23484-23503 | MS.gene061115:CDS | 45.0% | |
| ATACCGGGAAGAGAAAATGG+TGG | - | 32638:26211-26230 | MS.gene061115:intron | 45.0% | |
| CACCTCAGATACCAGGTTAA+AGG | - | 32638:25482-25501 | MS.gene061115:CDS | 45.0% | |
| CCACTATTAACATCTGCCAC+AGG | + | 32638:24531-24550 | None:intergenic | 45.0% | |
| CCCAACAGCTATATTTGACC+AGG | - | 32638:27148-27167 | MS.gene061115:intron | 45.0% | |
| CCCTAATGCTTGTGCAACAT+TGG | - | 32638:27121-27140 | MS.gene061115:intron | 45.0% | |
| CCCTGTGAAGGAAGAATATC+TGG | - | 32638:27086-27105 | MS.gene061115:intron | 45.0% | |
| CCTGTGGCAGATGTTAATAG+TGG | - | 32638:24528-24547 | MS.gene061115:CDS | 45.0% | |
| CGGGGCCTATCTCAAATATT+GGG | + | 32638:26560-26579 | None:intergenic | 45.0% | |
| CTATTAACATCTGCCACAGG+GGG | + | 32638:24528-24547 | None:intergenic | 45.0% | |
| CTCAGAGTGGTTAGTGTTTG+AGG | - | 32638:26593-26612 | MS.gene061115:intron | 45.0% | |
| CTGAGAATCTTGGTTCAACG+GGG | + | 32638:26578-26597 | None:intergenic | 45.0% | |
| GAAGCAGCAAGAACAATACC+GGG | - | 32638:26196-26215 | MS.gene061115:intron | 45.0% | |
| GAAGGAGCTAATCTCAGTAC+AGG | - | 32638:26292-26311 | MS.gene061115:intron | 45.0% | |
| GATGGTGAGGTCTCATTATG+TGG | - | 32638:26337-26356 | MS.gene061115:intron | 45.0% | |
| GCCAATGTTGCACAAGCATT+AGG | + | 32638:27125-27144 | None:intergenic | 45.0% | |
| GCTTATTCACCTCAGATACC+AGG | - | 32638:25475-25494 | MS.gene061115:CDS | 45.0% | |
| GGAAGCAGCAAGAACAATAC+CGG | - | 32638:26195-26214 | MS.gene061115:intron | 45.0% | |
| GGCATTAGTGTGGATGAAAG+TGG | - | 32638:26615-26634 | MS.gene061115:intron | 45.0% | |
| GGTGCAGTTCCTATTATACC+AGG | + | 32638:25815-25834 | None:intergenic | 45.0% | |
| GTCCTTTAACCTGGTATCTG+AGG | + | 32638:25487-25506 | None:intergenic | 45.0% | |
| TCAACTGCAAGCAAATCTCC+GGG | + | 32638:25319-25338 | None:intergenic | 45.0% | |
| TCAGTCTCTCAAACTATGCG+AGG | - | 32638:25895-25914 | MS.gene061115:intron | 45.0% | |
| TCGACAAAGTCGGTGAATAC+TGG | + | 32638:23954-23973 | None:intergenic | 45.0% | |
| TTAGTGTGGATGAAAGTGGG+AGG | - | 32638:26619-26638 | MS.gene061115:intron | 45.0% | |
| TTATTGGCCCACTAAGGTGA+TGG | + | 32638:25264-25283 | None:intergenic | 45.0% | |
| ! | CTATCTTGTTGTCCCTGTGA+AGG | - | 32638:27074-27093 | MS.gene061115:intron | 45.0% |
| ! | GAAATGGTAGATTGGACTGG+AGG | - | 32638:24567-24586 | MS.gene061115:CDS | 45.0% |
| ! | GGGTGCCATCTATTATGAAG+AGG | + | 32638:24498-24517 | None:intergenic | 45.0% |
| ! | GTTTGGCATTACTCTGAGGA+AGG | + | 32638:24335-24354 | None:intergenic | 45.0% |
| ! | TCTGCAACTGGAGGTATATC+TGG | + | 32638:23485-23504 | None:intergenic | 45.0% |
| ! | TCTGGTTTCTTTACAAGGCG+GGG | + | 32638:27395-27414 | None:intergenic | 45.0% |
| ! | TTGGCATTACTCTGAGGAAG+GGG | + | 32638:24333-24352 | None:intergenic | 45.0% |
| !! | ACAACTAGTCTTGGAGTTGG+AGG | + | 32638:24435-24454 | None:intergenic | 45.0% |
| !! | AGTGTTTGAGGGCATTAGTG+TGG | - | 32638:26605-26624 | MS.gene061115:intron | 45.0% |
| AAAGAAGAAGCCATGGGAGC+AGG | - | 32638:23433-23452 | MS.gene061115:CDS | 50.0% | |
| AGGTGACATGCACTTCTCAC+AGG | - | 32638:26312-26331 | MS.gene061115:intron | 50.0% | |
| ATATGTGGTCCTTCCACCAG+TGG | - | 32638:24298-24317 | MS.gene061115:CDS | 50.0% | |
| ATGCACTTCTCACAGGGTGA+TGG | - | 32638:26319-26338 | MS.gene061115:intron | 50.0% | |
| GGATGCCACCTATTGTGAAG+AGG | + | 32638:23464-23483 | None:intergenic | 50.0% | |
| GGTGACATGCACTTCTCACA+GGG | - | 32638:26313-26332 | MS.gene061115:intron | 50.0% | |
| TCCTTCCACCAGTGGAAAAC+CGG | - | 32638:24306-24325 | MS.gene061115:CDS | 50.0% | |
| TGAAGCCCCATTCATCACCA+GGG | + | 32638:25363-25382 | None:intergenic | 50.0% | |
| TGGATAGGAGTGAGGTTTCC+AGG | - | 32638:25779-25798 | MS.gene061115:intron | 50.0% | |
| ! | ATTACTCTGAGGAAGGGGAC+CGG | + | 32638:24328-24347 | None:intergenic | 50.0% |
| ! | GGTTTTGCATAGCAGACCCT+TGG | - | 32638:25916-25935 | MS.gene061115:intron | 50.0% |
| ! | TCCTCTCCCTGGTGATGAAT+GGG | - | 32638:25354-25373 | MS.gene061115:intron | 50.0% |
| !! | GGCACAACTAGTCTTGGAGT+TGG | + | 32638:24438-24457 | None:intergenic | 50.0% |
| AGAGGTAGTTCCTGCTCCCA+TGG | + | 32638:23446-23465 | None:intergenic | 55.0% | |
| CCAGTTGCAGAGGCTACAAC+TGG | - | 32638:23494-23513 | MS.gene061115:CDS | 55.0% | |
| CCAGTTGTAGCCTCTGCAAC+TGG | + | 32638:23497-23516 | None:intergenic | 55.0% | |
| GCCAGGTCCATCACCTTAGT+GGG | - | 32638:25254-25273 | MS.gene061115:intron | 55.0% | |
| GGGTTGACATGAAGGGGAGT+GGG | + | 32638:26540-26559 | None:intergenic | 55.0% | |
| GGTTGACATGAAGGGGAGTG+GGG | + | 32638:26539-26558 | None:intergenic | 55.0% | |
| GTGAAGCCCCATTCATCACC+AGG | + | 32638:25364-25383 | None:intergenic | 55.0% | |
| GTTGTAGCCTCTGCAACTGG+AGG | + | 32638:23494-23513 | None:intergenic | 55.0% | |
| TGCAAGCAAATCTCCGGGCT+GGG | + | 32638:25314-25333 | None:intergenic | 55.0% | |
| ! | CCTCTCCCTGGTGATGAATG+GGG | - | 32638:25355-25374 | MS.gene061115:intron | 55.0% |
| ! | CTTCTCACAGGGTGATGGTG+AGG | - | 32638:26324-26343 | MS.gene061115:intron | 55.0% |
| ! | GTCCTCTCCCTGGTGATGAA+TGG | - | 32638:25353-25372 | MS.gene061115:intron | 55.0% |
| ! | TGGGTTGACATGAAGGGGAG+TGG | + | 32638:26541-26560 | None:intergenic | 55.0% |
| !! | ACCGGTTTTCCACTGGTGGA+AGG | + | 32638:24310-24329 | None:intergenic | 55.0% |
| !! | TCTTGGAGTTGGAGGTGCCA+TGG | + | 32638:24427-24446 | None:intergenic | 55.0% |
| CCCCATTCATCACCAGGGAG+AGG | + | 32638:25358-25377 | None:intergenic | 60.0% | |
| CTGCAAGCAAATCTCCGGGC+TGG | + | 32638:25315-25334 | None:intergenic | 60.0% | |
| GAGTGGGGCCCATTGGTGTA+AGG | + | 32638:26524-26543 | None:intergenic | 60.0% | |
| GGCCAGGTCCATCACCTTAG+TGG | - | 32638:25253-25272 | MS.gene061115:intron | 60.0% | |
| TGCAACTTGGGTCCTCTCCC+TGG | - | 32638:25343-25362 | MS.gene061115:intron | 60.0% | |
| ! | CTGCCACAGGGGGTATGTCA+GGG | + | 32638:24518-24537 | None:intergenic | 60.0% |
| ! | TCTGCCACAGGGGGTATGTC+AGG | + | 32638:24519-24538 | None:intergenic | 60.0% |
| !! | GAAGGGGACCGGTTTTCCAC+TGG | + | 32638:24317-24336 | None:intergenic | 60.0% |
| !! | GCCCACTAAGGTGATGGACC+TGG | + | 32638:25258-25277 | None:intergenic | 60.0% |
| !! | GGATGATGGGGAAATGGGCC+AGG | - | 32638:25237-25256 | MS.gene061115:intron | 60.0% |
| GATGGTATCCCAGCCCAGCC+CGG | - | 32638:25298-25317 | MS.gene061115:intron | 65.0% | |
| GCACCCTGACATACCCCCTG+TGG | - | 32638:24512-24531 | MS.gene061115:CDS | 65.0% | |
| TGAAGGGGAGTGGGGCCCAT+TGG | + | 32638:26531-26550 | None:intergenic | 65.0% | |
| ! | AGCAAATCTCCGGGCTGGGC+TGG | + | 32638:25310-25329 | None:intergenic | 65.0% |
| ! | GCAAATCTCCGGGCTGGGCT+GGG | + | 32638:25309-25328 | None:intergenic | 65.0% |
| !! | GGGGACCGGTTTTCCACTGG+TGG | + | 32638:24314-24333 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 32638 | gene | 23392 | 27478 | 23392 | ID=MS.gene061115 |
| 32638 | mRNA | 23392 | 27478 | 23392 | ID=MS.gene061115.t1;Parent=MS.gene061115 |
| 32638 | exon | 27260 | 27478 | 27260 | ID=MS.gene061115.t1.exon1;Parent=MS.gene061115.t1 |
| 32638 | CDS | 27260 | 27478 | 27260 | ID=cds.MS.gene061115.t1;Parent=MS.gene061115.t1 |
| 32638 | exon | 25374 | 25611 | 25374 | ID=MS.gene061115.t1.exon2;Parent=MS.gene061115.t1 |
| 32638 | CDS | 25374 | 25611 | 25374 | ID=cds.MS.gene061115.t1;Parent=MS.gene061115.t1 |
| 32638 | exon | 24894 | 25084 | 24894 | ID=MS.gene061115.t1.exon3;Parent=MS.gene061115.t1 |
| 32638 | CDS | 24894 | 25084 | 24894 | ID=cds.MS.gene061115.t1;Parent=MS.gene061115.t1 |
| 32638 | exon | 24478 | 24713 | 24478 | ID=MS.gene061115.t1.exon4;Parent=MS.gene061115.t1 |
| 32638 | CDS | 24478 | 24713 | 24478 | ID=cds.MS.gene061115.t1;Parent=MS.gene061115.t1 |
| 32638 | exon | 24139 | 24382 | 24139 | ID=MS.gene061115.t1.exon5;Parent=MS.gene061115.t1 |
| 32638 | CDS | 24139 | 24382 | 24139 | ID=cds.MS.gene061115.t1;Parent=MS.gene061115.t1 |
| 32638 | exon | 23701 | 23808 | 23701 | ID=MS.gene061115.t1.exon6;Parent=MS.gene061115.t1 |
| 32638 | CDS | 23701 | 23808 | 23701 | ID=cds.MS.gene061115.t1;Parent=MS.gene061115.t1 |
| 32638 | exon | 23392 | 23514 | 23392 | ID=MS.gene061115.t1.exon7;Parent=MS.gene061115.t1 |
| 32638 | CDS | 23392 | 23514 | 23392 | ID=cds.MS.gene061115.t1;Parent=MS.gene061115.t1 |
| Gene Sequence |
| Protein sequence |
