AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011878

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011878.t1 MTR_8g479390 98.336 541 8 1 1 540 1 541 0.0 1097
MS.gene011878.t1 MTR_5g018270 82.432 518 89 1 22 539 22 537 0.0 878
MS.gene011878.t1 MTR_8g479380 65.774 523 176 3 15 535 13 534 0.0 731
MS.gene011878.t1 MTR_4g132320 62.830 530 195 1 11 538 11 540 0.0 686
MS.gene011878.t1 MTR_4g049390 60.385 520 204 1 22 539 18 537 0.0 665
MS.gene011878.t1 MTR_4g075690 59.434 530 210 2 15 539 10 539 0.0 662
MS.gene011878.t1 MTR_4g048350 60.385 520 203 2 22 539 18 536 0.0 656
MS.gene011878.t1 MTR_3g115050 59.259 540 213 2 7 539 1 540 0.0 652
MS.gene011878.t1 MTR_1g026410 59.252 535 216 1 7 539 5 539 0.0 648
MS.gene011878.t1 MTR_2g088080 60.583 515 201 1 26 538 25 539 0.0 642
MS.gene011878.t1 MTR_4g083190 54.512 543 232 5 1 533 1 538 0.0 596
MS.gene011878.t1 MTR_3g083440 52.919 531 238 5 13 533 8 536 0.0 570
MS.gene011878.t1 MTR_3g083390 52.919 531 238 5 13 533 8 536 0.0 569
MS.gene011878.t1 MTR_3g083430 52.919 531 238 5 13 533 8 536 0.0 569
MS.gene011878.t1 MTR_3g083400 52.731 531 239 5 13 533 8 536 0.0 566
MS.gene011878.t1 MTR_3g083450 53.654 520 230 4 24 533 19 537 0.0 566
MS.gene011878.t1 MTR_4g083210 52.471 526 243 4 14 533 8 532 0.0 561
MS.gene011878.t1 MTR_2g088080 60.262 458 180 1 83 538 1 458 0.0 558
MS.gene011878.t1 MTR_4g075690 59.361 438 173 2 15 447 10 447 0.0 546
MS.gene011878.t1 MTR_3g083410 51.829 492 226 4 52 533 10 500 0.0 520
MS.gene011878.t1 MTR_4g101650 48.375 554 258 9 3 534 4 551 1.08e-172 501
MS.gene011878.t1 MTR_3g008580 47.197 553 263 8 3 533 7 552 1.72e-170 495
MS.gene011878.t1 MTR_7g051440 50.000 536 232 9 28 536 26 552 9.80e-168 488
MS.gene011878.t1 MTR_1g090707 46.852 540 269 9 9 534 3 538 6.30e-158 463
MS.gene011878.t1 MTR_4g133150 53.659 205 74 3 138 338 24 211 3.86e-64 208
MS.gene011878.t1 MTR_3g078740 26.981 593 345 19 15 536 13 588 1.24e-53 191
MS.gene011878.t1 MTR_8g091390 27.915 566 342 16 21 537 24 572 4.74e-53 189
MS.gene011878.t1 MTR_3g078700 28.288 555 341 17 13 536 11 539 3.54e-52 186
MS.gene011878.t1 MTR_3g101640 29.821 560 303 22 6 502 8 540 8.90e-51 183
MS.gene011878.t1 MTR_5g020600 29.456 533 311 20 8 492 11 526 1.01e-50 183
MS.gene011878.t1 MTR_5g020620 30.153 524 303 20 16 492 14 521 1.83e-49 179
MS.gene011878.t1 MTR_4g015120 26.975 519 331 13 14 492 7 517 3.70e-49 178
MS.gene011878.t1 MTR_5g069680 28.922 529 315 14 7 492 8 518 4.21e-48 176
MS.gene011878.t1 MTR_3g078730 27.125 553 349 17 13 536 11 538 1.86e-46 171
MS.gene011878.t1 MTR_3g101635 27.580 533 299 17 32 502 28 535 9.89e-45 166
MS.gene011878.t1 MTR_5g083360 27.736 530 321 17 14 492 9 527 8.05e-44 164
MS.gene011878.t1 MTR_3g462760 26.365 531 348 12 31 526 26 548 1.94e-42 160
MS.gene011878.t1 MTR_5g081810 25.752 532 336 16 45 532 13 529 1.04e-41 157
MS.gene011878.t1 MTR_2g008330 27.027 555 340 18 11 512 17 559 4.21e-40 153
MS.gene011878.t1 MTR_3g071890 26.577 523 324 15 14 488 16 526 5.57e-40 153
MS.gene011878.t1 MTR_5g073210 26.705 528 344 16 9 498 4 526 7.72e-40 152
MS.gene011878.t1 MTR_7g065980 25.865 549 347 16 9 505 4 544 2.03e-39 151
MS.gene011878.t1 MTR_7g065970 25.887 564 344 19 7 512 3 550 3.21e-39 151
MS.gene011878.t1 MTR_8g027375 23.580 581 385 14 1 532 1 571 1.26e-34 137
MS.gene011878.t1 MTR_7g062250 25.458 546 340 16 1 492 6 538 5.11e-34 136
MS.gene011878.t1 MTR_5g018290 81.818 66 12 0 474 539 5 70 7.55e-33 120
MS.gene011878.t1 MTR_7g062310 25.859 553 338 19 31 526 47 584 3.25e-32 131
MS.gene011878.t1 MTR_7g058690 25.098 510 332 17 31 492 33 540 7.65e-32 129
MS.gene011878.t1 MTR_7g458880 23.247 542 364 15 1 492 1 540 4.32e-31 127
MS.gene011878.t1 MTR_7g060460 24.037 545 357 18 1 492 1 541 2.86e-30 125
MS.gene011878.t1 MTR_4g019225 25.145 517 316 16 34 492 29 532 7.88e-30 124
MS.gene011878.t1 MTR_4g064530 22.285 534 359 14 8 492 19 545 9.77e-27 114
MS.gene011878.t1 MTR_4g064530 22.180 532 358 14 8 490 19 543 3.50e-25 109
MS.gene011878.t1 MTR_4g133160 46.226 106 43 2 417 522 4 95 8.32e-24 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011878.t1 AT5G66920 74.517 518 132 0 23 540 29 546 0.0 821
MS.gene011878.t1 AT4G37160 63.687 537 193 2 1 535 1 537 0.0 700
MS.gene011878.t1 AT2G23630 65.764 517 176 1 20 535 24 540 0.0 695
MS.gene011878.t1 AT2G23630 65.764 517 176 1 20 535 19 535 0.0 694
MS.gene011878.t1 AT4G22010 59.225 542 213 3 1 539 1 537 0.0 670
MS.gene011878.t1 AT1G21850 59.546 529 211 3 13 539 10 537 0.0 658
MS.gene011878.t1 AT1G76160 58.634 527 217 1 13 538 10 536 0.0 654
MS.gene011878.t1 AT1G21860 58.254 527 218 2 14 539 12 537 0.0 650
MS.gene011878.t1 AT1G41830 57.685 527 222 1 14 539 12 538 0.0 642
MS.gene011878.t1 AT4G38420 55.993 534 227 3 14 539 13 546 0.0 613
MS.gene011878.t1 AT3G13400 56.030 539 224 5 10 537 6 542 0.0 597
MS.gene011878.t1 AT3G13400 56.030 539 224 5 10 537 6 542 0.0 597
MS.gene011878.t1 AT1G55570 54.630 540 233 4 9 537 7 545 0.0 593
MS.gene011878.t1 AT1G55560 54.647 538 233 4 10 537 5 541 0.0 592
MS.gene011878.t1 AT3G13390 55.916 524 215 5 27 537 24 544 0.0 578
MS.gene011878.t1 AT4G37160 62.806 449 165 2 1 447 1 449 0.0 577
MS.gene011878.t1 AT4G28090 53.510 527 235 6 21 540 19 542 0.0 572
MS.gene011878.t1 AT5G48450 52.110 545 247 7 5 536 3 546 0.0 544
MS.gene011878.t1 AT5G48450 52.110 545 247 7 5 536 3 546 0.0 543
MS.gene011878.t1 AT4G12420 49.541 545 252 6 14 536 8 551 0.0 530
MS.gene011878.t1 AT4G12420 49.541 545 252 6 14 536 8 551 0.0 530
MS.gene011878.t1 AT4G38420 54.797 469 204 3 14 474 13 481 0.0 522
MS.gene011878.t1 AT1G75790 48.998 549 252 7 10 535 1 544 1.99e-178 514
MS.gene011878.t1 AT5G51480 47.448 529 257 6 26 533 23 551 8.42e-174 504
MS.gene011878.t1 AT4G38420 54.977 442 191 3 14 447 13 454 6.51e-173 496
MS.gene011878.t1 AT4G25240 48.014 554 264 9 1 533 1 551 2.88e-172 499
MS.gene011878.t1 AT4G25240 48.014 554 264 9 1 533 1 551 2.88e-172 499
MS.gene011878.t1 AT4G39830 28.961 587 344 17 4 534 10 579 5.94e-61 211
MS.gene011878.t1 AT5G21105 27.863 585 352 18 3 533 8 576 2.83e-59 207
MS.gene011878.t1 AT5G21105 28.598 542 322 17 3 490 8 538 1.45e-56 198
MS.gene011878.t1 AT5G21100 26.763 553 334 15 34 533 27 561 2.48e-54 193
MS.gene011878.t1 AT5G58910 28.918 536 317 17 6 492 7 527 1.37e-49 180
MS.gene011878.t1 AT5G58910 29.104 536 315 18 6 492 7 526 1.15e-48 177
MS.gene011878.t1 AT2G38080 26.364 550 343 16 6 512 8 538 2.31e-47 174
MS.gene011878.t1 AT4G39830 28.803 493 280 15 97 534 6 482 7.09e-47 171
MS.gene011878.t1 AT4G39830 28.803 493 280 15 97 534 8 484 9.00e-47 171
MS.gene011878.t1 AT5G09360 27.850 535 321 15 15 502 22 538 1.02e-45 169
MS.gene011878.t1 AT5G03260 27.239 547 342 18 8 512 5 537 1.34e-43 163
MS.gene011878.t1 AT5G58910 29.175 497 283 17 45 492 7 483 1.70e-43 162
MS.gene011878.t1 AT5G05390 26.744 516 335 13 16 492 14 525 2.25e-43 162
MS.gene011878.t1 AT4G39830 27.789 493 272 15 97 534 8 471 4.76e-42 157
MS.gene011878.t1 AT5G01190 27.255 521 326 14 14 492 9 518 3.93e-41 156
MS.gene011878.t1 AT2G30210 26.631 567 357 19 16 532 13 570 7.39e-41 155
MS.gene011878.t1 AT5G48100 27.017 533 325 19 32 512 23 543 1.11e-38 149
MS.gene011878.t1 AT5G01190 27.129 505 316 13 50 512 30 524 1.27e-38 149
MS.gene011878.t1 AT2G40370 24.954 541 342 13 9 492 7 540 3.53e-37 145
MS.gene011878.t1 AT1G18140 25.373 536 303 21 31 492 29 541 8.64e-37 144
MS.gene011878.t1 AT5G01050 24.354 542 351 14 42 534 39 570 2.19e-36 143
MS.gene011878.t1 AT3G09220 26.642 533 336 17 13 498 9 533 4.59e-36 142
MS.gene011878.t1 AT5G21105 28.613 346 213 10 208 533 54 385 2.14e-35 137
MS.gene011878.t1 AT5G01040 25.800 500 310 14 42 492 39 526 7.91e-34 135
MS.gene011878.t1 AT2G46570 23.497 549 362 12 31 532 32 569 2.93e-32 130
MS.gene011878.t1 AT2G29130 25.547 548 344 19 4 498 3 539 6.13e-32 130
MS.gene011878.t1 AT5G07130 29.508 305 190 10 14 298 9 308 5.79e-28 118
MS.gene011878.t1 AT3G09220 26.304 441 272 14 104 498 3 436 1.59e-24 107
MS.gene011878.t1 AT2G46570 23.984 492 316 12 88 532 4 484 3.03e-24 106
MS.gene011878.t1 AT5G60020 24.632 272 189 5 14 270 5 275 1.14e-22 102
MS.gene011878.t1 AT5G60020 24.632 272 189 5 14 270 5 275 1.80e-22 101
MS.gene011878.t1 AT5G60020 26.068 234 160 4 49 270 11 243 5.35e-21 97.1
MS.gene011878.t1 AT5G07130 28.000 225 139 9 94 298 2 223 9.38e-15 77.4
MS.gene011878.t1 AT5G07130 28.000 225 139 9 94 298 2 223 9.38e-15 77.4

Find 142 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGACCTTGATCACCATTTA+TGG 0.129038 8.2:-26572220 None:intergenic
TTGGGCAGCAATTATATCTT+AGG 0.161109 8.2:+26574055 MS.gene011878:CDS
AATATGGTAGTCCAAGAATT+TGG 0.193748 8.2:-26573970 None:intergenic
TTTGATAAATGGTCAATTTC+CGG 0.212336 8.2:+26571173 MS.gene011878:CDS
TCTCAATCTTGTCAACAAAT+TGG 0.240502 8.2:+26571233 MS.gene011878:CDS
GTCCTTAGGAGATTGGTTTA+AGG 0.256327 8.2:-26572522 None:intergenic
TTTACATGGACTGTAACTTA+TGG 0.266390 8.2:+26570795 MS.gene011878:CDS
CAAGGGAGTCATATATGTTT+TGG 0.267120 8.2:-26572463 None:intergenic
AATTCAGCCCCATTAATTAA+TGG 0.269918 8.2:+26573219 MS.gene011878:CDS
TCATGGCAAGATGGGGTATT+AGG 0.271766 8.2:+26571407 MS.gene011878:CDS
GCTGCTACATGCTGTTGTTT+TGG 0.283670 8.2:+26570725 MS.gene011878:CDS
ATTAATTAATGGGGCTGAAT+TGG 0.286067 8.2:-26573217 None:intergenic
CAAGCTCATTCAACCATAAA+TGG 0.290434 8.2:+26572207 MS.gene011878:CDS
GATAGGTGTACCCAAATTCT+TGG 0.312058 8.2:+26573959 MS.gene011878:intron
TAATTTGAGTTTGGAGGTAT+TGG 0.314497 8.2:-26571440 None:intergenic
TTAAGAGAGTCATTGGATTC+TGG 0.317167 8.2:+26572144 MS.gene011878:CDS
AACTCTCACTCCCCTGCTTC+TGG 0.317235 8.2:+26572614 MS.gene011878:CDS
GCTGATTACTTCAACATTCC+TGG 0.318878 8.2:+26573303 MS.gene011878:CDS
AAATTCTTGGACTACCATAT+TGG 0.318980 8.2:+26573972 MS.gene011878:CDS
CATAAAGCAGCTGGAGGGTT+TGG 0.320330 8.2:+26571527 MS.gene011878:CDS
CCCACTAATGTATTGCTTTG+TGG 0.326136 8.2:+26574120 MS.gene011878:CDS
TTCTCTTGGCTGGGGTCCAT+TGG 0.330809 8.2:-26573630 None:intergenic
CCACAAGGATCATACCATTA+TGG 0.335908 8.2:+26573162 MS.gene011878:CDS
GACTACCATATTGGTGTCAT+TGG 0.341712 8.2:+26573981 MS.gene011878:CDS
AGCAATTATATCTTAGGGTT+TGG 0.344173 8.2:+26574061 MS.gene011878:CDS
ATCCAAAGCATTCCTTCTAA+TGG 0.345085 8.2:+26573345 MS.gene011878:CDS
AAATTACACCTACAAGTTTC+AGG 0.351878 8.2:+26571457 MS.gene011878:CDS
TTGATAAATGGTCAATTTCC+GGG 0.362688 8.2:+26571174 MS.gene011878:CDS
TTATATATTCTTCTCTTGGC+TGG 0.366172 8.2:-26573640 None:intergenic
TGGTATGATCCTTGTGGGTT+TGG 0.366351 8.2:-26573156 None:intergenic
TTGTAGGTGTAATTTGAGTT+TGG 0.367723 8.2:-26571449 None:intergenic
TGATACAAGCTAGAAGCTTC+AGG 0.369255 8.2:+26572678 MS.gene011878:CDS
ACAGGCATTAAGAGAGTCAT+TGG 0.370974 8.2:+26572137 MS.gene011878:intron
TGGGCAATCAGCTGCTGTTT+TGG 0.371637 8.2:+26572496 MS.gene011878:CDS
GATGATTACAGTTATGGTTT+TGG 0.372698 8.2:+26573607 MS.gene011878:intron
GGAATCTGAGGTCTGCAATC+TGG 0.372739 8.2:+26574019 MS.gene011878:CDS
TGTAATAGTCCTTAGGAGAT+TGG 0.377432 8.2:-26572529 None:intergenic
GTATCAAAGACCAATGATAT+TGG 0.380499 8.2:-26572661 None:intergenic
ATGCAATCTTGGCATCTTGA+TGG 0.383813 8.2:+26573450 MS.gene011878:CDS
GCTTTATGAAGTTGAGTTGA+TGG 0.387011 8.2:-26571512 None:intergenic
TAAATTATATATTCTTCTCT+TGG 0.392973 8.2:-26573644 None:intergenic
TCACTTTGCTCATTGGTGAT+TGG 0.396844 8.2:+26571612 MS.gene011878:CDS
CATAATGGTATGATCCTTGT+GGG 0.398204 8.2:-26573161 None:intergenic
ATGAAAATACAATGCAATCT+TGG 0.401696 8.2:+26573439 MS.gene011878:CDS
CCTGTGCAGTGTGCCTGGTC+GGG 0.404349 8.2:-26573675 None:intergenic
GACCATTAGAAGGAATGCTT+TGG 0.417901 8.2:-26573347 None:intergenic
TCGATTAACTTCAGAATTCA+AGG 0.430963 8.2:+26572398 MS.gene011878:CDS
ACTCACCAAGTGAGTAGAAA+TGG 0.431555 8.2:-26571261 None:intergenic
ATATGGTAGTCCAAGAATTT+GGG 0.432178 8.2:-26573969 None:intergenic
ATCTGGGAACGACAATATCT+TGG 0.433578 8.2:+26574036 MS.gene011878:CDS
GGAGATTTCACTTTGCTCAT+TGG 0.438918 8.2:+26571605 MS.gene011878:CDS
TCCACTTGGTACTCCTCAGC+AGG 0.446386 8.2:+26570827 MS.gene011878:CDS
GAATCCACACTGAATATTCC+AGG 0.448996 8.2:-26573321 None:intergenic
TGGGCAGCAATTATATCTTA+GGG 0.450283 8.2:+26574056 MS.gene011878:CDS
ACATAAGCGGGACCATTAGA+AGG 0.451286 8.2:-26573357 None:intergenic
CTAGGCAAAGGACCAGAAGC+AGG 0.457793 8.2:-26572626 None:intergenic
GACCAATGATATTGGTAAGC+AGG 0.459227 8.2:-26572653 None:intergenic
ACCTGTGCAGTGTGCCTGGT+CGG 0.460863 8.2:-26573676 None:intergenic
AGCAAAGTGAAATCTCCATC+AGG 0.461466 8.2:-26571599 None:intergenic
TATATATTCTTCTCTTGGCT+GGG 0.463167 8.2:-26573639 None:intergenic
ATCCTTGGCCTGAAACTTGT+AGG 0.465914 8.2:-26571465 None:intergenic
ATTACGAAGGCTACGTTGAT+CGG 0.468319 8.2:-26574085 None:intergenic
GTTGTCCAATGACACCAATA+TGG 0.477039 8.2:-26573986 None:intergenic
GCAACAATGTAATAGTCCTT+AGG 0.478519 8.2:-26572536 None:intergenic
CCATAATGGTATGATCCTTG+TGG 0.478583 8.2:-26573162 None:intergenic
ACCAACCATTTCTACTCACT+TGG 0.479632 8.2:+26571256 MS.gene011878:CDS
GAATCTGAGGTCTGCAATCT+GGG 0.481200 8.2:+26574020 MS.gene011878:CDS
GTTTGGAGGTATTGGACAGT+TGG 0.481575 8.2:-26571432 None:intergenic
ATAAAGTCATGGAGAGAAGT+TGG 0.482654 8.2:-26573396 None:intergenic
TATTGGTAAGCAGGAGGACT+AGG 0.484687 8.2:-26572644 None:intergenic
TCTCCATCAGGGTATGGATA+AGG 0.485055 8.2:-26571587 None:intergenic
ACCACAAAGCAATACATTAG+TGG 0.487778 8.2:-26574121 None:intergenic
CCTGATGGTCTGCTCATCAA+TGG 0.488482 8.2:+26572183 MS.gene011878:CDS
CCCGACCAGGCACACTGCAC+AGG 0.488841 8.2:+26573675 MS.gene011878:CDS
TCAACCATAAATGGTGATCA+AGG 0.489856 8.2:+26572216 MS.gene011878:CDS
ATTGCCCAACATGGATATCA+AGG 0.489958 8.2:-26572481 None:intergenic
CCACAAAGCAATACATTAGT+GGG 0.495327 8.2:-26574120 None:intergenic
CTGTGCAGTGTGCCTGGTCG+GGG 0.496443 8.2:-26573674 None:intergenic
TACCCTAAAACTAGTTGAAG+TGG 0.497712 8.2:+26572424 MS.gene011878:CDS
CCATTGATGAGCAGACCATC+AGG 0.498849 8.2:-26572183 None:intergenic
GACTCCCTTGATATCCATGT+TGG 0.499688 8.2:+26572476 MS.gene011878:CDS
TTTCAGGCCAAGGATCAGAT+TGG 0.499961 8.2:+26571473 MS.gene011878:CDS
ATTGGCTAATACAATTGTCT+TGG 0.501801 8.2:-26573199 None:intergenic
ATATATTCTTCTCTTGGCTG+GGG 0.505075 8.2:-26573638 None:intergenic
CTCCTGCTTACCAATATCAT+TGG 0.509305 8.2:+26572651 MS.gene011878:CDS
TAGGTGTAATTTGAGTTTGG+AGG 0.509800 8.2:-26571446 None:intergenic
TATGGAACTCTTTCTCCACT+TGG 0.512938 8.2:+26570813 MS.gene011878:CDS
GTATGTTCCAATCTGATCCT+TGG 0.513014 8.2:-26571480 None:intergenic
GCTAATACAATTGTCTTGGT+AGG 0.515240 8.2:-26573195 None:intergenic
GTGAAATCTCCATCAGGGTA+TGG 0.518841 8.2:-26571593 None:intergenic
TCTCTAGTGCAAGCAGAAGA+TGG 0.523779 8.2:+26570762 MS.gene011878:CDS
ACTCAACTTCATAAAGCAGC+TGG 0.524206 8.2:+26571518 MS.gene011878:CDS
TCTGGGAACGACAATATCTT+GGG 0.527163 8.2:+26574037 MS.gene011878:CDS
CACCTACAAGTTTCAGGCCA+AGG 0.533785 8.2:+26571463 MS.gene011878:CDS
ACTCCCTTGATATCCATGTT+GGG 0.534332 8.2:+26572477 MS.gene011878:CDS
AGTTACCTGTGCAGTGTGCC+TGG 0.536564 8.2:-26573680 None:intergenic
ATATTAAACGTGATGTCCAC+TGG 0.536612 8.2:-26574148 None:intergenic
AATCTAGGTTACCTTATGGT+TGG 0.545747 8.2:-26571642 None:intergenic
AACCTTAAACCAATCTCCTA+AGG 0.547455 8.2:+26572520 MS.gene011878:CDS
CTAAAACTAGTTGAAGTGGA+AGG 0.548921 8.2:+26572428 MS.gene011878:CDS
CATTGGACAACCAAGGTATG+TGG 0.549670 8.2:+26573998 MS.gene011878:CDS
TATGTTCAGAATCTCAAATG+TGG 0.551025 8.2:+26572364 MS.gene011878:CDS
TTGGTACAAGACCAACCATA+AGG 0.552905 8.2:+26571631 MS.gene011878:CDS
ACTAAGTCTAGTTGAGGCCC+CGG 0.554159 8.2:-26571192 None:intergenic
ACCTCAGATTCCACATACCT+TGG 0.554697 8.2:-26574008 None:intergenic
CAGCAGCTGATTGCCCAACA+TGG 0.563210 8.2:-26572490 None:intergenic
GTTCCTTATCCATACCCTGA+TGG 0.567591 8.2:+26571584 MS.gene011878:CDS
ATTACGTTACGCTGTAAACA+AGG 0.568438 8.2:+26573245 MS.gene011878:CDS
AAACAAGCTCAATAAAGTCA+TGG 0.570270 8.2:-26573407 None:intergenic
ATTTAGTCGATGCCCCGACC+AGG 0.571494 8.2:+26573662 MS.gene011878:CDS
AGTTGCTGTGAGAATCCGTC+GGG 0.584315 8.2:-26572573 None:intergenic
TAGGCAAAGGACCAGAAGCA+GGG 0.587628 8.2:-26572625 None:intergenic
ACTGAGGTAGCTACATAAGC+GGG 0.589799 8.2:-26573369 None:intergenic
CAACTTCATAAAGCAGCTGG+AGG 0.592120 8.2:+26571521 MS.gene011878:CDS
AAGTAATCAGCAAGCTTGAG+TGG 0.597051 8.2:-26573291 None:intergenic
ATCTAACAGCAAATGCTGCA+AGG 0.598770 8.2:+26573133 MS.gene011878:CDS
TAAAACTAGTTGAAGTGGAA+GGG 0.611609 8.2:+26572429 MS.gene011878:CDS
AACTTCATAAAGCAGCTGGA+GGG 0.614826 8.2:+26571522 MS.gene011878:CDS
ATGTTCAGAATCTCAAATGT+GGG 0.615138 8.2:+26572365 MS.gene011878:CDS
AGGCAAAGGACCAGAAGCAG+GGG 0.619105 8.2:-26572624 None:intergenic
TTAGTTACTAAGTCTAGTTG+AGG 0.619241 8.2:-26571198 None:intergenic
TGATAAATGGTCAATTTCCG+GGG 0.623543 8.2:+26571175 MS.gene011878:CDS
GCAAAGTGAAATCTCCATCA+GGG 0.626543 8.2:-26571598 None:intergenic
ACCAAGGTATGTGGAATCTG+AGG 0.626802 8.2:+26574007 MS.gene011878:CDS
CTAGGAATGGCATTAAACAA+AGG 0.626838 8.2:+26571378 MS.gene011878:intron
AAATCTCTAGCATTTCCTGA+TGG 0.629511 8.2:+26572168 MS.gene011878:CDS
CAGTTGCTGTGAGAATCCGT+CGG 0.629755 8.2:-26572574 None:intergenic
TACTGAGGTAGCTACATAAG+CGG 0.630941 8.2:-26573370 None:intergenic
TTGCTTTGTGGTAAAGCCAG+TGG 0.631774 8.2:+26574132 MS.gene011878:CDS
TGGTGTATCAGAGTTTACAT+AGG 0.634021 8.2:-26573271 None:intergenic
TTGCCCAACATGGATATCAA+GGG 0.634046 8.2:-26572480 None:intergenic
AGTCTATTACACACCTGCTG+AGG 0.644359 8.2:-26570840 None:intergenic
ACCAAGTGAGTAGAAATGGT+TGG 0.645111 8.2:-26571257 None:intergenic
CTTAGTAACTAATGAAAACG+TGG 0.658482 8.2:+26571209 MS.gene011878:CDS
TAAGCAGGAGGACTAGGCAA+AGG 0.659557 8.2:-26572638 None:intergenic
GAATGTTATATTCATTACGA+AGG 0.664979 8.2:-26574098 None:intergenic
ACCTGCTGAGGAGTACCAAG+TGG 0.666374 8.2:-26570828 None:intergenic
GCTGCAAGGCCAAACCCACA+AGG 0.670571 8.2:+26573147 MS.gene011878:CDS
CAATGATATTGGTAAGCAGG+AGG 0.672778 8.2:-26572650 None:intergenic
CATTCCTGGAATATTCAGTG+TGG 0.677266 8.2:+26573317 MS.gene011878:CDS
GAGAGAAGTTGGCAATACTG+AGG 0.700024 8.2:-26573385 None:intergenic
TTGGTGTCATTGGACAACCA+AGG 0.743917 8.2:+26573991 MS.gene011878:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAATGAAAAAGTTGAA+TGG - chr8.2:26572293-26572312 None:intergenic 15.0%
!! ATATTGATATATGAAATCAT+AGG - chr8.2:26570993-26571012 None:intergenic 15.0%
!! CAGGTAATAATTAATAAATA+TGG + chr8.2:26572697-26572716 MS.gene011878:intron 15.0%
!! TAAATTATATATTCTTCTCT+TGG - chr8.2:26573647-26573666 None:intergenic 15.0%
!! TATAAGATATACAATAGATT+TGG + chr8.2:26573829-26573848 MS.gene011878:intron 15.0%
!! TATTGATATATGAAATCATA+GGG - chr8.2:26570992-26571011 None:intergenic 15.0%
!! TTACAAATGTTAATATCATA+TGG - chr8.2:26573896-26573915 None:intergenic 15.0%
!!! ATATTTTCTCAAAAATAAAG+TGG + chr8.2:26572044-26572063 MS.gene011878:intron 15.0%
!!! ATTTGTAATATGTTATCTTT+TGG + chr8.2:26573908-26573927 MS.gene011878:intron 15.0%
!!! GTAATTTTCCATTAATTAAT+GGG - chr8.2:26573230-26573249 None:intergenic 15.0%
!!! TAACATTTTTATTGTAAACT+AGG + chr8.2:26571360-26571379 MS.gene011878:intron 15.0%
!!! TAATTTTCCATTAATTAATG+GGG - chr8.2:26573229-26573248 None:intergenic 15.0%
!! AGAACATAAAGATGAATATT+AGG - chr8.2:26572111-26572130 None:intergenic 20.0%
!! ATAAAAAATGTGATGTTAAG+TGG + chr8.2:26572013-26572032 MS.gene011878:intron 20.0%
!! ATAGGTATTTCTTAATTCTA+AGG + chr8.2:26572073-26572092 MS.gene011878:intron 20.0%
!! GATAAATTATTGCAAACTTT+AGG - chr8.2:26573087-26573106 None:intergenic 20.0%
!! GTATCTAATATTTGTATTGA+AGG - chr8.2:26573004-26573023 None:intergenic 20.0%
!! TGAATATTTAGAAGCTATTA+TGG - chr8.2:26572782-26572801 None:intergenic 20.0%
!! TGTTCAATTTGTATAGAAAA+TGG - chr8.2:26571681-26571700 None:intergenic 20.0%
!! TTAAACAAAGGAAAAATTCA+TGG + chr8.2:26571390-26571409 MS.gene011878:CDS 20.0%
!!! AGTTGCTTAAAATTGTTTTA+AGG + chr8.2:26573559-26573578 MS.gene011878:intron 20.0%
!!! ATGGATACAAATATTTTACA+TGG + chr8.2:26570781-26570800 MS.gene011878:CDS 20.0%
!!! CATTAAATTTGTTTTGCAAA+CGG + chr8.2:26572304-26572323 MS.gene011878:intron 20.0%
!!! CGTAATTTTCCATTAATTAA+TGG - chr8.2:26573231-26573250 None:intergenic 20.0%
!!! GTTGCTTAAAATTGTTTTAA+GGG + chr8.2:26573560-26573579 MS.gene011878:intron 20.0%
!!! TCTATATTCTTTATTTCAGA+TGG + chr8.2:26573109-26573128 MS.gene011878:intron 20.0%
!!! TGACATTTTATTTGAGAAAA+TGG + chr8.2:26571335-26571354 MS.gene011878:intron 20.0%
!!! TTGCTTAAAATTGTTTTAAG+GGG + chr8.2:26573561-26573580 MS.gene011878:intron 20.0%
!!! TTTTAGGTGATTTTGATAAA+TGG + chr8.2:26571162-26571181 MS.gene011878:intron 20.0%
!!! TTTTGGTACATCATTTTTTT+AGG + chr8.2:26571146-26571165 MS.gene011878:intron 20.0%
!!! TTTTTATTGTAAACTAGGAA+TGG + chr8.2:26571365-26571384 MS.gene011878:intron 20.0%
! ATAGCTTCTAAATATTCAAG+AGG + chr8.2:26572784-26572803 MS.gene011878:intron 25.0%
! ATGAAAATACAATGCAATCT+TGG + chr8.2:26573439-26573458 MS.gene011878:CDS 25.0%
! GAAAGATGACTTATATAACA+AGG - chr8.2:26572845-26572864 None:intergenic 25.0%
! GAATGTTATATTCATTACGA+AGG - chr8.2:26574101-26574120 None:intergenic 25.0%
! GAATTAAGAAATACCTATTG+AGG - chr8.2:26572071-26572090 None:intergenic 25.0%
! TAGAAATCAAACTTTGTACT+CGG + chr8.2:26573713-26573732 MS.gene011878:intron 25.0%
! TATTGTGATGATTACAGTTA+TGG + chr8.2:26573601-26573620 MS.gene011878:intron 25.0%
! TCAATTTGTATAGAAAATGG+AGG - chr8.2:26571678-26571697 None:intergenic 25.0%
! TTTGATAAATGGTCAATTTC+CGG + chr8.2:26571173-26571192 MS.gene011878:CDS 25.0%
!! AAGATGTAATATTTTACCAG+AGG + chr8.2:26570882-26570901 MS.gene011878:intron 25.0%
!! TCTTTATGTTCTGATTTTAC+AGG + chr8.2:26572119-26572138 MS.gene011878:intron 25.0%
!! TGAATTCTAATCGAAAGTTT+TGG + chr8.2:26571129-26571148 MS.gene011878:intron 25.0%
!!! ATCTTGATGGTTATGATTTT+TGG + chr8.2:26573463-26573482 MS.gene011878:CDS 25.0%
!!! TACCAGAGGTTTTTTTTTTA+AGG + chr8.2:26570896-26570915 MS.gene011878:intron 25.0%
!!! TAGGAGTTATTTTTCCATAA+TGG - chr8.2:26573179-26573198 None:intergenic 25.0%
!!! TCTACTTTTTTGCAAATTCT+AGG + chr8.2:26572263-26572282 MS.gene011878:intron 25.0%
!!! TCTTGATGGTTATGATTTTT+GGG + chr8.2:26573464-26573483 MS.gene011878:CDS 25.0%
!!! TGCTTAAAATTGTTTTAAGG+GGG + chr8.2:26573562-26573581 MS.gene011878:intron 25.0%
AAAATAAAGTGGACCTCAAT+AGG + chr8.2:26572055-26572074 MS.gene011878:intron 30.0%
AAAATACTGAGCTTGAAATC+TGG + chr8.2:26571860-26571879 MS.gene011878:intron 30.0%
AAACAAGCTCAATAAAGTCA+TGG - chr8.2:26573410-26573429 None:intergenic 30.0%
AAATTACACCTACAAGTTTC+AGG + chr8.2:26571457-26571476 MS.gene011878:CDS 30.0%
AAATTCTTGGACTACCATAT+TGG + chr8.2:26573972-26573991 MS.gene011878:CDS 30.0%
AATATGGTAGTCCAAGAATT+TGG - chr8.2:26573973-26573992 None:intergenic 30.0%
AATTCAGCCCCATTAATTAA+TGG + chr8.2:26573219-26573238 MS.gene011878:CDS 30.0%
AGCAATTATATCTTAGGGTT+TGG + chr8.2:26574061-26574080 MS.gene011878:CDS 30.0%
ATACTTAGTTGCTTACTTTC+AGG + chr8.2:26572332-26572351 MS.gene011878:intron 30.0%
ATATGGTAGTCCAAGAATTT+GGG - chr8.2:26573972-26573991 None:intergenic 30.0%
ATGTTCAGAATCTCAAATGT+GGG + chr8.2:26572365-26572384 MS.gene011878:CDS 30.0%
ATTAATTAATGGGGCTGAAT+TGG - chr8.2:26573220-26573239 None:intergenic 30.0%
ATTGGCTAATACAATTGTCT+TGG - chr8.2:26573202-26573221 None:intergenic 30.0%
CAATAGATTTGGATTGTGTA+CGG + chr8.2:26573840-26573859 MS.gene011878:intron 30.0%
CTTAGTAACTAATGAAAACG+TGG + chr8.2:26571209-26571228 MS.gene011878:CDS 30.0%
GATGTTAGAAAGTTATGACA+TGG - chr8.2:26571704-26571723 None:intergenic 30.0%
GTATCAAAGACCAATGATAT+TGG - chr8.2:26572664-26572683 None:intergenic 30.0%
GTCCTTAAAAAAAAAACCTC+TGG - chr8.2:26570901-26570920 None:intergenic 30.0%
TAAAACTAGTTGAAGTGGAA+GGG + chr8.2:26572429-26572448 MS.gene011878:CDS 30.0%
TAAGAAAATCAGCACATCAA+CGG - chr8.2:26571907-26571926 None:intergenic 30.0%
TATATATTCTTCTCTTGGCT+GGG - chr8.2:26573642-26573661 None:intergenic 30.0%
TATGTTCAGAATCTCAAATG+TGG + chr8.2:26572364-26572383 MS.gene011878:CDS 30.0%
TCGATTAACTTCAGAATTCA+AGG + chr8.2:26572398-26572417 MS.gene011878:CDS 30.0%
TCTCAATCTTGTCAACAAAT+TGG + chr8.2:26571233-26571252 MS.gene011878:CDS 30.0%
TGTATGAGTGATGTAAATCT+CGG - chr8.2:26573742-26573761 None:intergenic 30.0%
TTAGTTACTAAGTCTAGTTG+AGG - chr8.2:26571201-26571220 None:intergenic 30.0%
TTATATATTCTTCTCTTGGC+TGG - chr8.2:26573643-26573662 None:intergenic 30.0%
TTGATAAATGGTCAATTTCC+GGG + chr8.2:26571174-26571193 MS.gene011878:CDS 30.0%
TTTAGCGCAAATGATTAGTA+TGG - chr8.2:26573767-26573786 None:intergenic 30.0%
! AACAAGGATCTTCAGATTTT+GGG - chr8.2:26572829-26572848 None:intergenic 30.0%
! GATCAAATGTCACTCTTTTA+CGG + chr8.2:26570926-26570945 MS.gene011878:intron 30.0%
! GATGATTACAGTTATGGTTT+TGG + chr8.2:26573607-26573626 MS.gene011878:intron 30.0%
! GCATTGTATTTTCATCATTC+TGG - chr8.2:26573434-26573453 None:intergenic 30.0%
! TAACAAGGATCTTCAGATTT+TGG - chr8.2:26572830-26572849 None:intergenic 30.0%
! TAATTTGAGTTTGGAGGTAT+TGG - chr8.2:26571443-26571462 None:intergenic 30.0%
! TATCTTTTGGTATGCTTACT+TGG + chr8.2:26573921-26573940 MS.gene011878:intron 30.0%
! TTGTAGGTGTAATTTGAGTT+TGG - chr8.2:26571452-26571471 None:intergenic 30.0%
! TTTACATGGACTGTAACTTA+TGG + chr8.2:26570795-26570814 MS.gene011878:CDS 30.0%
!! AACATGATTTGGATTTTCTG+CGG - chr8.2:26571955-26571974 None:intergenic 30.0%
!! AACCAATTTTGATCTGATGT+CGG + chr8.2:26572882-26572901 MS.gene011878:intron 30.0%
!!! AACTTTAGGCTTGTTGATTT+TGG - chr8.2:26573073-26573092 None:intergenic 30.0%
!!! TTCCACTTCAACTAGTTTTA+GGG - chr8.2:26572429-26572448 None:intergenic 30.0%
AAATCTCTAGCATTTCCTGA+TGG + chr8.2:26572168-26572187 MS.gene011878:CDS 35.0%
AACCTTAAACCAATCTCCTA+AGG + chr8.2:26572520-26572539 MS.gene011878:CDS 35.0%
AATCTAGGTTACCTTATGGT+TGG - chr8.2:26571645-26571664 None:intergenic 35.0%
ACCACAAAGCAATACATTAG+TGG - chr8.2:26574124-26574143 None:intergenic 35.0%
ACCATAAGGTAACCTAGATT+AGG + chr8.2:26571645-26571664 MS.gene011878:intron 35.0%
ACCTAATCTAGGTTACCTTA+TGG - chr8.2:26571649-26571668 None:intergenic 35.0%
ACTCGTGTTACAACATGATT+TGG - chr8.2:26571966-26571985 None:intergenic 35.0%
AGGAAAAATTCATGGCAAGA+TGG + chr8.2:26571398-26571417 MS.gene011878:CDS 35.0%
ATAAAGTCATGGAGAGAAGT+TGG - chr8.2:26573399-26573418 None:intergenic 35.0%
ATATATTCTTCTCTTGGCTG+GGG - chr8.2:26573641-26573660 None:intergenic 35.0%
ATTACGTTACGCTGTAAACA+AGG + chr8.2:26573245-26573264 MS.gene011878:CDS 35.0%
CAAGCTCATTCAACCATAAA+TGG + chr8.2:26572207-26572226 MS.gene011878:CDS 35.0%
CATAATGGTATGATCCTTGT+GGG - chr8.2:26573164-26573183 None:intergenic 35.0%
CCACAAAGCAATACATTAGT+GGG - chr8.2:26574123-26574142 None:intergenic 35.0%
CTAAAACTAGTTGAAGTGGA+AGG + chr8.2:26572428-26572447 MS.gene011878:CDS 35.0%
CTAGGAATGGCATTAAACAA+AGG + chr8.2:26571378-26571397 MS.gene011878:intron 35.0%
GAAAAATTCATGGCAAGATG+GGG + chr8.2:26571400-26571419 MS.gene011878:CDS 35.0%
GCAACAATGTAATAGTCCTT+AGG - chr8.2:26572539-26572558 None:intergenic 35.0%
GCTAATACAATTGTCTTGGT+AGG - chr8.2:26573198-26573217 None:intergenic 35.0%
GGAAAAATTCATGGCAAGAT+GGG + chr8.2:26571399-26571418 MS.gene011878:CDS 35.0%
GGTGTGCTACAAATTATGAT+AGG + chr8.2:26573942-26573961 MS.gene011878:intron 35.0%
TACCCTAAAACTAGTTGAAG+TGG + chr8.2:26572424-26572443 MS.gene011878:CDS 35.0%
TCAACCATAAATGGTGATCA+AGG + chr8.2:26572216-26572235 MS.gene011878:CDS 35.0%
TCATTTGCGCTAAATTTCGA+TGG + chr8.2:26573773-26573792 MS.gene011878:intron 35.0%
TCTATTCTCACTGAGCTTAA+TGG + chr8.2:26571019-26571038 MS.gene011878:intron 35.0%
TGATAAATGGTCAATTTCCG+GGG + chr8.2:26571175-26571194 MS.gene011878:CDS 35.0%
TGGGCAGCAATTATATCTTA+GGG + chr8.2:26574056-26574075 MS.gene011878:CDS 35.0%
TGGTGTATCAGAGTTTACAT+AGG - chr8.2:26573274-26573293 None:intergenic 35.0%
TGTAATAGTCCTTAGGAGAT+TGG - chr8.2:26572532-26572551 None:intergenic 35.0%
TGTATTGAAGGTCTACTTGA+TGG - chr8.2:26572992-26573011 None:intergenic 35.0%
TTAAGAGAGTCATTGGATTC+TGG + chr8.2:26572144-26572163 MS.gene011878:CDS 35.0%
TTGGGCAGCAATTATATCTT+AGG + chr8.2:26574055-26574074 MS.gene011878:CDS 35.0%
! ATCCAAAGCATTCCTTCTAA+TGG + chr8.2:26573345-26573364 MS.gene011878:CDS 35.0%
! CAAGGGAGTCATATATGTTT+TGG - chr8.2:26572466-26572485 None:intergenic 35.0%
! CTGAGCTTAATGGTCAATTT+TGG + chr8.2:26571029-26571048 MS.gene011878:intron 35.0%
! TAGGTGTAATTTGAGTTTGG+AGG - chr8.2:26571449-26571468 None:intergenic 35.0%
!! GCTTTATGAAGTTGAGTTGA+TGG - chr8.2:26571515-26571534 None:intergenic 35.0%
!!! CTTCCACTTCAACTAGTTTT+AGG - chr8.2:26572430-26572449 None:intergenic 35.0%
!!! GGTTATGATTTTTGGGTTGT+GGG + chr8.2:26573471-26573490 MS.gene011878:CDS 35.0%
!!! GTTATGATTTTTGGGTTGTG+GGG + chr8.2:26573472-26573491 MS.gene011878:CDS 35.0%
!!! TGGTTATGATTTTTGGGTTG+TGG + chr8.2:26573470-26573489 MS.gene011878:CDS 35.0%
AACTTCATAAAGCAGCTGGA+GGG + chr8.2:26571522-26571541 MS.gene011878:CDS 40.0%
AAGTAATCAGCAAGCTTGAG+TGG - chr8.2:26573294-26573313 None:intergenic 40.0%
AATAGTAACCTCTGTTGCGA+AGG + chr8.2:26571730-26571749 MS.gene011878:intron 40.0%
ACAGGCATTAAGAGAGTCAT+TGG + chr8.2:26572137-26572156 MS.gene011878:intron 40.0%
ACCAACCATTTCTACTCACT+TGG + chr8.2:26571256-26571275 MS.gene011878:CDS 40.0%
ACCAAGTGAGTAGAAATGGT+TGG - chr8.2:26571260-26571279 None:intergenic 40.0%
ACTCAACTTCATAAAGCAGC+TGG + chr8.2:26571518-26571537 MS.gene011878:CDS 40.0%
ACTCACCAAGTGAGTAGAAA+TGG - chr8.2:26571264-26571283 None:intergenic 40.0%
ACTCCCTTGATATCCATGTT+GGG + chr8.2:26572477-26572496 MS.gene011878:CDS 40.0%
AGCAAAGTGAAATCTCCATC+AGG - chr8.2:26571602-26571621 None:intergenic 40.0%
ATCTAACAGCAAATGCTGCA+AGG + chr8.2:26573133-26573152 MS.gene011878:CDS 40.0%
ATCTGGGAACGACAATATCT+TGG + chr8.2:26574036-26574055 MS.gene011878:CDS 40.0%
ATGCAATCTTGGCATCTTGA+TGG + chr8.2:26573450-26573469 MS.gene011878:CDS 40.0%
ATTACGAAGGCTACGTTGAT+CGG - chr8.2:26574088-26574107 None:intergenic 40.0%
ATTGAAGGTCTACTTGATGG+TGG - chr8.2:26572989-26573008 None:intergenic 40.0%
ATTGCCCAACATGGATATCA+AGG - chr8.2:26572484-26572503 None:intergenic 40.0%
CAATGATATTGGTAAGCAGG+AGG - chr8.2:26572653-26572672 None:intergenic 40.0%
CATTCCTGGAATATTCAGTG+TGG + chr8.2:26573317-26573336 MS.gene011878:CDS 40.0%
CCACAAGGATCATACCATTA+TGG + chr8.2:26573162-26573181 MS.gene011878:CDS 40.0%
CCATAATGGTATGATCCTTG+TGG - chr8.2:26573165-26573184 None:intergenic 40.0%
CCCACTAATGTATTGCTTTG+TGG + chr8.2:26574120-26574139 MS.gene011878:CDS 40.0%
CTCCTGCTTACCAATATCAT+TGG + chr8.2:26572651-26572670 MS.gene011878:CDS 40.0%
CTGACCTTGATCACCATTTA+TGG - chr8.2:26572223-26572242 None:intergenic 40.0%
GAATCCACACTGAATATTCC+AGG - chr8.2:26573324-26573343 None:intergenic 40.0%
GACCAATGATATTGGTAAGC+AGG - chr8.2:26572656-26572675 None:intergenic 40.0%
GACCATTAGAAGGAATGCTT+TGG - chr8.2:26573350-26573369 None:intergenic 40.0%
GATAGGTGTACCCAAATTCT+TGG + chr8.2:26573959-26573978 MS.gene011878:intron 40.0%
GCAAAGTGAAATCTCCATCA+GGG - chr8.2:26571601-26571620 None:intergenic 40.0%
GCTGATTACTTCAACATTCC+TGG + chr8.2:26573303-26573322 MS.gene011878:CDS 40.0%
GGAGATTTCACTTTGCTCAT+TGG + chr8.2:26571605-26571624 MS.gene011878:CDS 40.0%
GGAGGACAAAAACCTAATCT+AGG - chr8.2:26571660-26571679 None:intergenic 40.0%
GTATGTTCCAATCTGATCCT+TGG - chr8.2:26571483-26571502 None:intergenic 40.0%
GTCCGACATCAGATCAAAAT+TGG - chr8.2:26572887-26572906 None:intergenic 40.0%
GTTGTCCAATGACACCAATA+TGG - chr8.2:26573989-26574008 None:intergenic 40.0%
TACTGAGGTAGCTACATAAG+CGG - chr8.2:26573373-26573392 None:intergenic 40.0%
TATGGAACTCTTTCTCCACT+TGG + chr8.2:26570813-26570832 MS.gene011878:CDS 40.0%
TCTGGGAACGACAATATCTT+GGG + chr8.2:26574037-26574056 MS.gene011878:CDS 40.0%
TGATACAAGCTAGAAGCTTC+AGG + chr8.2:26572678-26572697 MS.gene011878:CDS 40.0%
TTGCCCAACATGGATATCAA+GGG - chr8.2:26572483-26572502 None:intergenic 40.0%
TTGGTACAAGACCAACCATA+AGG + chr8.2:26571631-26571650 MS.gene011878:CDS 40.0%
! AAGGATCTTCAGATTTTGGG+TGG - chr8.2:26572826-26572845 None:intergenic 40.0%
! CTTCAACAAGATTTTCCCGA+CGG + chr8.2:26572558-26572577 MS.gene011878:CDS 40.0%
! TCACTTTGCTCATTGGTGAT+TGG + chr8.2:26571612-26571631 MS.gene011878:CDS 40.0%
!! GACTACCATATTGGTGTCAT+TGG + chr8.2:26573981-26574000 MS.gene011878:CDS 40.0%
!! GTCCTTAGGAGATTGGTTTA+AGG - chr8.2:26572525-26572544 None:intergenic 40.0%
!!! ACAGTTATGGTTTTGGCCAA+TGG + chr8.2:26573614-26573633 MS.gene011878:intron 40.0%
ACATAAGCGGGACCATTAGA+AGG - chr8.2:26573360-26573379 None:intergenic 45.0%
ACCAAGGTATGTGGAATCTG+AGG + chr8.2:26574007-26574026 MS.gene011878:CDS 45.0%
ACCTCAGATTCCACATACCT+TGG - chr8.2:26574011-26574030 None:intergenic 45.0%
ACTGAGGTAGCTACATAAGC+GGG - chr8.2:26573372-26573391 None:intergenic 45.0%
AGTCTATTACACACCTGCTG+AGG - chr8.2:26570843-26570862 None:intergenic 45.0%
ATCCTTGGCCTGAAACTTGT+AGG - chr8.2:26571468-26571487 None:intergenic 45.0%
ATCGAAATCCTTCGCAACAG+AGG - chr8.2:26571741-26571760 None:intergenic 45.0%
CAACTTCATAAAGCAGCTGG+AGG + chr8.2:26571521-26571540 MS.gene011878:CDS 45.0%
CATTGGACAACCAAGGTATG+TGG + chr8.2:26573998-26574017 MS.gene011878:CDS 45.0%
GACTCCCTTGATATCCATGT+TGG + chr8.2:26572476-26572495 MS.gene011878:CDS 45.0%
GAGAGAAGTTGGCAATACTG+AGG - chr8.2:26573388-26573407 None:intergenic 45.0%
GTGAAATCTCCATCAGGGTA+TGG - chr8.2:26571596-26571615 None:intergenic 45.0%
GTTCCTTATCCATACCCTGA+TGG + chr8.2:26571584-26571603 MS.gene011878:CDS 45.0%
TATTGGTAAGCAGGAGGACT+AGG - chr8.2:26572647-26572666 None:intergenic 45.0%
TCCAACAACTAACGATGTGC+TGG - chr8.2:26571788-26571807 None:intergenic 45.0%
TCTCCATCAGGGTATGGATA+AGG - chr8.2:26571590-26571609 None:intergenic 45.0%
TCTCTAGTGCAAGCAGAAGA+TGG + chr8.2:26570762-26570781 MS.gene011878:CDS 45.0%
TGGTATGATCCTTGTGGGTT+TGG - chr8.2:26573159-26573178 None:intergenic 45.0%
TTGCTTTGTGGTAAAGCCAG+TGG + chr8.2:26574132-26574151 MS.gene011878:CDS 45.0%
TTTCAGGCCAAGGATCAGAT+TGG + chr8.2:26571473-26571492 MS.gene011878:CDS 45.0%
! GAATCTGAGGTCTGCAATCT+GGG + chr8.2:26574020-26574039 MS.gene011878:CDS 45.0%
! TCATGGCAAGATGGGGTATT+AGG + chr8.2:26571407-26571426 MS.gene011878:CDS 45.0%
!! GCTGCTACATGCTGTTGTTT+TGG + chr8.2:26570725-26570744 MS.gene011878:CDS 45.0%
!! GTTTGGAGGTATTGGACAGT+TGG - chr8.2:26571435-26571454 None:intergenic 45.0%
!! TTGGTGTCATTGGACAACCA+AGG + chr8.2:26573991-26574010 MS.gene011878:CDS 45.0%
ACTAAGTCTAGTTGAGGCCC+CGG - chr8.2:26571195-26571214 None:intergenic 50.0%
AGTTGCTGTGAGAATCCGTC+GGG - chr8.2:26572576-26572595 None:intergenic 50.0%
ATCAGCACATCAACGGTCGT+TGG - chr8.2:26571900-26571919 None:intergenic 50.0%
CACCTACAAGTTTCAGGCCA+AGG + chr8.2:26571463-26571482 MS.gene011878:CDS 50.0%
CAGTTGCTGTGAGAATCCGT+CGG - chr8.2:26572577-26572596 None:intergenic 50.0%
CATAAAGCAGCTGGAGGGTT+TGG + chr8.2:26571527-26571546 MS.gene011878:CDS 50.0%
CCATTGATGAGCAGACCATC+AGG - chr8.2:26572186-26572205 None:intergenic 50.0%
CCTGATGGTCTGCTCATCAA+TGG + chr8.2:26572183-26572202 MS.gene011878:CDS 50.0%
GCCAGCACATCGTTAGTTGT+TGG + chr8.2:26571784-26571803 MS.gene011878:intron 50.0%
GTGTACGGTATGACTGCATG+CGG + chr8.2:26573855-26573874 MS.gene011878:intron 50.0%
TAAGCAGGAGGACTAGGCAA+AGG - chr8.2:26572641-26572660 None:intergenic 50.0%
TAGGCAAAGGACCAGAAGCA+GGG - chr8.2:26572628-26572647 None:intergenic 50.0%
TCAGCACATCAACGGTCGTT+GGG - chr8.2:26571899-26571918 None:intergenic 50.0%
TGCATGCGGTCAGTCACATT+TGG + chr8.2:26573869-26573888 MS.gene011878:intron 50.0%
! GGAATCTGAGGTCTGCAATC+TGG + chr8.2:26574019-26574038 MS.gene011878:CDS 50.0%
!! AACTAACGATGTGCTGGCTG+CGG - chr8.2:26571782-26571801 None:intergenic 50.0%
!! TGGGCAATCAGCTGCTGTTT+TGG + chr8.2:26572496-26572515 MS.gene011878:CDS 50.0%
AACTCTCACTCCCCTGCTTC+TGG + chr8.2:26572614-26572633 MS.gene011878:CDS 55.0%
AGGCAAAGGACCAGAAGCAG+GGG - chr8.2:26572627-26572646 None:intergenic 55.0%
AGTTACCTGTGCAGTGTGCC+TGG - chr8.2:26573683-26573702 None:intergenic 55.0%
ATTTAGTCGATGCCCCGACC+AGG + chr8.2:26573662-26573681 MS.gene011878:CDS 55.0%
CAGCAGCTGATTGCCCAACA+TGG - chr8.2:26572493-26572512 None:intergenic 55.0%
CTAGGCAAAGGACCAGAAGC+AGG - chr8.2:26572629-26572648 None:intergenic 55.0%
TCCACTTGGTACTCCTCAGC+AGG + chr8.2:26570827-26570846 MS.gene011878:CDS 55.0%
TTCTCTTGGCTGGGGTCCAT+TGG - chr8.2:26573633-26573652 None:intergenic 55.0%
!! ACCTGCTGAGGAGTACCAAG+TGG - chr8.2:26570831-26570850 None:intergenic 55.0%
!! ACTAACGATGTGCTGGCTGC+GGG - chr8.2:26571781-26571800 None:intergenic 55.0%
ACCTGTGCAGTGTGCCTGGT+CGG - chr8.2:26573679-26573698 None:intergenic 60.0%
GCTGCAAGGCCAAACCCACA+AGG + chr8.2:26573147-26573166 MS.gene011878:CDS 60.0%
CCTGTGCAGTGTGCCTGGTC+GGG - chr8.2:26573678-26573697 None:intergenic 65.0%
CTGTGCAGTGTGCCTGGTCG+GGG - chr8.2:26573677-26573696 None:intergenic 65.0%
CCCGACCAGGCACACTGCAC+AGG + chr8.2:26573675-26573694 MS.gene011878:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 26570699 26574167 26570699 ID=MS.gene011878
chr8.2 mRNA 26570699 26574167 26570699 ID=MS.gene011878.t1;Parent=MS.gene011878
chr8.2 exon 26570699 26570848 26570699 ID=MS.gene011878.t1.exon1;Parent=MS.gene011878.t1
chr8.2 CDS 26570699 26570848 26570699 ID=cds.MS.gene011878.t1;Parent=MS.gene011878.t1
chr8.2 exon 26571168 26571277 26571168 ID=MS.gene011878.t1.exon2;Parent=MS.gene011878.t1
chr8.2 CDS 26571168 26571277 26571168 ID=cds.MS.gene011878.t1;Parent=MS.gene011878.t1
chr8.2 exon 26571382 26571652 26571382 ID=MS.gene011878.t1.exon3;Parent=MS.gene011878.t1
chr8.2 CDS 26571382 26571652 26571382 ID=cds.MS.gene011878.t1;Parent=MS.gene011878.t1
chr8.2 exon 26572141 26572237 26572141 ID=MS.gene011878.t1.exon4;Parent=MS.gene011878.t1
chr8.2 CDS 26572141 26572237 26572141 ID=cds.MS.gene011878.t1;Parent=MS.gene011878.t1
chr8.2 exon 26572354 26572699 26572354 ID=MS.gene011878.t1.exon5;Parent=MS.gene011878.t1
chr8.2 CDS 26572354 26572699 26572354 ID=cds.MS.gene011878.t1;Parent=MS.gene011878.t1
chr8.2 exon 26573128 26573493 26573128 ID=MS.gene011878.t1.exon6;Parent=MS.gene011878.t1
chr8.2 CDS 26573128 26573493 26573128 ID=cds.MS.gene011878.t1;Parent=MS.gene011878.t1
chr8.2 exon 26573618 26573696 26573618 ID=MS.gene011878.t1.exon7;Parent=MS.gene011878.t1
chr8.2 CDS 26573618 26573696 26573618 ID=cds.MS.gene011878.t1;Parent=MS.gene011878.t1
chr8.2 exon 26573964 26574167 26573964 ID=MS.gene011878.t1.exon8;Parent=MS.gene011878.t1
chr8.2 CDS 26573964 26574167 26573964 ID=cds.MS.gene011878.t1;Parent=MS.gene011878.t1
Gene Sequence

>MS.gene011878

ATGAGAAGCACATGTTTTCTCTATCTGCTGCTACATGCTGTTGTTTTGGCTTTGCTTAGTGTTTCTCTAGTGCAAGCAGAAGATGGATACAAATATTTTACATGGACTGTAACTTATGGAACTCTTTCTCCACTTGGTACTCCTCAGCAGGTGTGTAATAGACTTGCAACATTGAATCTTATTAAGATGTAATATTTTACCAGAGGTTTTTTTTTTAAGGACTTATTGATCAAATGTCACTCTTTTACGGTACATATTCGTACTAAAAATCATAATCAAACGAGTTTTTACCCTATGATTTCATATATCAATATGTTATTTCTATTCTCACTGAGCTTAATGGTCAATTTTGGTGCTAAACTAGACTTAATAACTAATGACATTATGACAATATGAATTTGATTTGCAGTACGAATACGAATTGTGTTTTTGAATTCTAATCGAAAGTTTTGGTACATCATTTTTTTAGGTGATTTTGATAAATGGTCAATTTCCGGGGCCTCAACTAGACTTAGTAACTAATGAAAACGTGGTTCTCAATCTTGTCAACAAATTGGACCAACCATTTCTACTCACTTGGTGAGTTTCTCTAATGAGAATACATATCAAATAGATTATTCATTTTCTTAGTATATGTGACATTTTATTTGAGAAAATGGTTTAACATTTTTATTGTAAACTAGGAATGGCATTAAACAAAGGAAAAATTCATGGCAAGATGGGGTATTAGGAACCAACTGTCCAATACCTCCAAACTCAAATTACACCTACAAGTTTCAGGCCAAGGATCAGATTGGAACATACACATACTTTCCATCAACTCAACTTCATAAAGCAGCTGGAGGGTTTGGAGCAATTAATGTCTATCATAGATCTGTCATCGCAGTTCCTTATCCATACCCTGATGGAGATTTCACTTTGCTCATTGGTGATTGGTACAAGACCAACCATAAGGTAACCTAGATTAGGTTTTTGTCCTCCATTTTCTATACAAATTGAACACCATGTCATAACTTTCTAACATCACTAGTAATAGTAACCTCTGTTGCGAAGGATTTCGATTTTTTTAATCACAAATTCCCGCAGCCAGCACATCGTTAGTTGTTGGATCGAGATAGAACAGTGCAGAAAGCAAACATATTTTAAGTATTTTTTAACTCTAAAATACTGAGCTTGAAATCTGGACTCTAATATCGACCCAACGACCGTTGATGTGCTGATTTTCTTATTGCATAAATGCATAGAATTCGTGACCGCAGAAAATCCAAATCATGTTGTAACACGAGTCTGAAGAGAAAGTCGCGTGTTAATTAAATAAAAAATGTGATGTTAAGTGGCAAGAAAAATATTTTCTCAAAAATAAAGTGGACCTCAATAGGTATTTCTTAATTCTAAGGATGAATTTGAATCCTAATATTCATCTTTATGTTCTGATTTTACAGGCATTAAGAGAGTCATTGGATTCTGGAAAATCTCTAGCATTTCCTGATGGTCTGCTCATCAATGGTCAAGCTCATTCAACCATAAATGGTGATCAAGGTCAGTCTTTTCAAAAGAATATAGTTCTACTTTTTTGCAAATTCTAGGAAAACCATTCAACTTTTTCATTAAATTTGTTTTGCAAACGGTATTTATACTTAGTTGCTTACTTTCAGGAAAGACTTATATGTTCAGAATCTCAAATGTGGGAATGTCGACATCGATTAACTTCAGAATTCAAGGACATACCCTAAAACTAGTTGAAGTGGAAGGGTCACATGTTATCCAAAACATATATGACTCCCTTGATATCCATGTTGGGCAATCAGCTGCTGTTTTGGTAACCTTAAACCAATCTCCTAAGGACTATTACATTGTTGCTTCAACAAGATTTTCCCGACGGATTCTCACAGCAACTGCAGTGTTGCACTATACAAACTCTCACTCCCCTGCTTCTGGTCCTTTGCCTAGTCCTCCTGCTTACCAATATCATTGGTCTTTGATACAAGCTAGAAGCTTCAGGTAATAATTAATAAATATGGTGATTTTCATATTTTAAAATTTCTCAATTTTTATTTTATACTTAATTTTGTTCAAGTATCCATAATAGCTTCTAAATATTCAAGAGGATTTCACATTACATCTCCACCCAAAATCTGAAGATCCTTGTTATATAAGTCATCTTTCTTTCATGTCATTCATTTAACCAATTTTGATCTGATGTCGGACTAAACACTCACATTAGTAAAAGAACACGATTACTATACTTGCATCGCTGTTATCAACTAATTGAACATGTAATCTTACTCCACCATCAAGTAGACCTTCAATACAAATATTAGATACAGTATTTTGTGAGAGACTAAAAACATATTCAAACATGAAATTCTAACCAAAATCAACAAGCCTAAAGTTTGCAATAATTTATCTATCTATATTCTTTATTTCAGATGGAATCTAACAGCAAATGCTGCAAGGCCAAACCCACAAGGATCATACCATTATGGAAAAATAACTCCTACCAAGACAATTGTATTAGCCAATTCAGCCCCATTAATTAATGGAAAATTACGTTACGCTGTAAACAAGGTTTCCTATGTAAACTCTGATACACCACTCAAGCTTGCTGATTACTTCAACATTCCTGGAATATTCAGTGTGGATTCAATCCAAAGCATTCCTTCTAATGGTCCCGCTTATGTAGCTACCTCAGTATTGCCAACTTCTCTCCATGACTTTATTGAGCTTGTTTTCCAGAATGATGAAAATACAATGCAATCTTGGCATCTTGATGGTTATGATTTTTGGGTTGTGGGGTATGTGATCTTTTCTTTATTTGCATTTTGCTTTAATCAAGTTTATGTGCTTTAGAAATAATCATAGTTGCTTAAAATTGTTTTAAGGGGGAGATGATGATGATGTTTATTGTGATGATTACAGTTATGGTTTTGGCCAATGGACCCCAGCCAAGAGAAGAATATATAATTTAGTCGATGCCCCGACCAGGCACACTGCACAGGTAACTTTTTTATAAGTAGAAATCAAACTTTGTACTCGGTGTCCGAGATTTACATCACTCATACACTCCATACTAATCATTTGCGCTAAATTTCGATGGTACATATTAGTAACTAAAAATAAAAATATACTTTATAAGATATACAATAGATTTGGATTGTGTACGGTATGACTGCATGCGGTCAGTCACATTTGGACCATATGATATTAACATTTGTAATATGTTATCTTTTGGTATGCTTACTTGGTGTGCTACAAATTATGATAGGTGTACCCAAATTCTTGGACTACCATATTGGTGTCATTGGACAACCAAGGTATGTGGAATCTGAGGTCTGCAATCTGGGAACGACAATATCTTGGGCAGCAATTATATCTTAGGGTTTGGACCGATCAACGTAGCCTTCGTAATGAATATAACATTCCCACTAATGTATTGCTTTGTGGTAAAGCCAGTGGACATCACGTTTAA
Protein sequence

>MS.gene011878.t1

MRSTCFLYLLLHAVVLALLSVSLVQAEDGYKYFTWTVTYGTLSPLGTPQQVILINGQFPGPQLDLVTNENVVLNLVNKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQAKDQIGTYTYFPSTQLHKAAGGFGAINVYHRSVIAVPYPYPDGDFTLLIGDWYKTNHKALRESLDSGKSLAFPDGLLINGQAHSTINGDQGKTYMFRISNVGMSTSINFRIQGHTLKLVEVEGSHVIQNIYDSLDIHVGQSAAVLVTLNQSPKDYYIVASTRFSRRILTATAVLHYTNSHSPASGPLPSPPAYQYHWSLIQARSFRWNLTANAARPNPQGSYHYGKITPTKTIVLANSAPLINGKLRYAVNKVSYVNSDTPLKLADYFNIPGIFSVDSIQSIPSNGPAYVATSVLPTSLHDFIELVFQNDENTMQSWHLDGYDFWVVGYGFGQWTPAKRRIYNLVDAPTRHTAQVYPNSWTTILVSLDNQGMWNLRSAIWERQYLGQQLYLRVWTDQRSLRNEYNIPTNVLLCGKASGHHV