AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012116

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012116.t1 AT4G36020 46.763 278 121 7 1 271 6 263 1.78e-56 182
MS.gene012116.t1 AT4G36020 43.894 303 127 8 1 271 6 297 3.50e-56 182
MS.gene012116.t1 AT4G36020 43.894 303 127 8 1 271 6 297 3.50e-56 182
MS.gene012116.t1 AT2G17870 46.622 296 123 7 5 271 10 299 1.92e-45 155
MS.gene012116.t1 AT4G38680 41.237 194 76 2 4 159 9 202 2.26e-22 92.0
MS.gene012116.t1 AT3G42860 31.387 137 72 3 159 273 223 359 4.39e-15 74.7
MS.gene012116.t1 AT3G42860 33.117 154 79 5 79 218 216 359 6.71e-14 71.2
MS.gene012116.t1 AT3G43590 23.404 282 131 8 44 273 96 344 3.29e-12 66.6

Find 107 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACGGTGGCGGTGGATA+TGG 0.297469 8.4:+29691109 MS.gene012116:CDS
TCCTAAGGGTGAACCTCTTC+AGG 0.319731 8.4:+29690835 MS.gene012116:CDS
GCAAGGGATTGTGAGGCTTC+TGG 0.335506 8.4:+29691418 MS.gene012116:CDS
GGTGGAGGCGGCGGTGGTCG+TGG 0.346511 8.4:+29690875 MS.gene012116:CDS
AACTATGGTGGAGGCGGCGG+TGG 0.381171 8.4:+29690869 MS.gene012116:CDS
CCGCCGCCGCCTCCGCTACT+AGG 0.384433 8.4:-29691193 None:intergenic
ACCGGTGACATCAACGGCTT+TGG 0.389735 8.4:-29690813 None:intergenic
AGAAGGTTTGGCGGTGGTGG+TGG 0.393791 8.4:+29691340 MS.gene012116:CDS
TGTTATACTTGTGGTGATAC+TGG 0.397825 8.4:+29690938 MS.gene012116:CDS
AACAGAAGGTTTGGCGGTGG+TGG 0.399361 8.4:+29691337 MS.gene012116:CDS
ATTGTGAGGCTTCTGGTTGA+TGG 0.406808 8.4:+29691425 MS.gene012116:CDS
TTTGATGAATCCGAAGCCTT+TGG 0.409445 8.4:-29690669 None:intergenic
AGTAGCGGAGGCGGCGGCGG+TGG 0.413340 8.4:+29691196 MS.gene012116:CDS
GGTGGTGGCAACAGAAGGTT+TGG 0.419148 8.4:+29691328 MS.gene012116:CDS
GGCGGTGGTCGTGGATTTAG+AGG 0.421752 8.4:+29690884 MS.gene012116:CDS
TGCTACAGGTGTGGTGGGGT+TGG 0.430495 8.4:+29691145 MS.gene012116:CDS
CGTTGATGTCACCGGTCCTA+AGG 0.435362 8.4:+29690820 MS.gene012116:CDS
TTCAACAACACCAAAGGCTT+CGG 0.440293 8.4:+29690659 MS.gene012116:CDS
AGGTTTGGCGGTGGTGGTGG+CGG 0.444094 8.4:+29691343 MS.gene012116:CDS
AGAAGGAACGGTGGTGGTGG+TGG 0.446028 8.4:+29690914 MS.gene012116:CDS
GATAACTATGGTGGAGGCGG+CGG 0.448297 8.4:+29690866 MS.gene012116:CDS
CATCTTGCTACAGGTGTGGT+GGG 0.457817 8.4:+29691140 MS.gene012116:CDS
TGCTTTAACTGTGGGAAGGC+AGG 0.462177 8.4:+29691388 MS.gene012116:CDS
GGCGGTCGCGATGGAGGAAA+AGG 0.463269 8.4:+29691361 MS.gene012116:CDS
GAGAGAAGGAACGGTGGTGG+TGG 0.470011 8.4:+29690911 MS.gene012116:CDS
GAGATCTTCGCTATCGTCAT+CGG 0.473073 8.4:-29690693 None:intergenic
GATCGCTCTGGTGGTGGTGG+TGG 0.473309 8.4:+29691007 MS.gene012116:CDS
CCTAGTAGCGGAGGCGGCGG+CGG 0.475047 8.4:+29691193 MS.gene012116:CDS
GATGGCAATGGAAGGTTTGG+TGG 0.475514 8.4:+29691310 MS.gene012116:CDS
AGATCTTCGCTATCGTCATC+GGG 0.477231 8.4:-29690692 None:intergenic
AACAACAACAACGGTGGCGG+TGG 0.478614 8.4:+29691103 MS.gene012116:CDS
GTGAGGTGGGTCACATAGCT+AGG 0.482831 8.4:+29691236 MS.gene012116:CDS
GATGATGGCAATGGAAGGTT+TGG 0.485258 8.4:+29691307 MS.gene012116:CDS
GGAAGGTATGATGGTGGCAA+TGG 0.489704 8.4:+29691277 MS.gene012116:CDS
TTGCTATAAGTGCGGTGAGG+TGG 0.492734 8.4:+29691222 MS.gene012116:CDS
ACCTGAAGAGGTTCACCCTT+AGG 0.495108 8.4:-29690836 None:intergenic
GCTAGGGATTGCAGCAATGA+AGG 0.497533 8.4:+29691253 MS.gene012116:CDS
GTGATACTGGTCACATCGCT+AGG 0.498797 8.4:+29690951 MS.gene012116:CDS
ACATCTTGCTACAGGTGTGG+TGG 0.503337 8.4:+29691139 MS.gene012116:CDS
GGTGGTGGCGGTCGCGATGG+AGG 0.503410 8.4:+29691355 MS.gene012116:CDS
AGGGTGAACCTCTTCAGGTT+AGG 0.518271 8.4:+29690840 MS.gene012116:CDS
GTGGAGGCACATCTTGCTAC+AGG 0.518304 8.4:+29691131 MS.gene012116:CDS
TGCTATAAGTGCGGTGAGGT+GGG 0.518807 8.4:+29691223 MS.gene012116:CDS
ATCGTTCCGATCGGAATGAT+AGG 0.521685 8.4:+29690981 MS.gene012116:CDS
GGTGGTGGTGGCGGTCGCGA+TGG 0.528129 8.4:+29691352 MS.gene012116:CDS
TGAACCTCTTCAGGTTAGGC+AGG 0.528588 8.4:+29690844 MS.gene012116:CDS
ACAATCGCCGACGGTGATAA+CGG 0.532690 8.4:+29690785 MS.gene012116:CDS
GGTGAGAGAAGGAACGGTGG+TGG 0.532764 8.4:+29690908 MS.gene012116:CDS
AATGATCGCTCTGGTGGTGG+TGG 0.533030 8.4:+29691004 MS.gene012116:CDS
GGTGGCAACAGAAGGTTTGG+CGG 0.535347 8.4:+29691331 MS.gene012116:CDS
TTTGCTAGGGATTGCATGCG+TGG 0.536617 8.4:+29691073 MS.gene012116:CDS
GGTATGATGGTGGCAATGGA+AGG 0.540936 8.4:+29691281 MS.gene012116:CDS
CAGGTTAGGCAGGATAACTA+TGG 0.541696 8.4:+29690854 MS.gene012116:CDS
CAATCTGACATCAGATCTGA+AGG 0.544978 8.4:+29690725 MS.gene012116:CDS
ACCAAAGCCGTTGATGTCAC+CGG 0.545847 8.4:+29690812 MS.gene012116:CDS
GAATCAGCGGCGTGGTGCAA+TGG 0.549203 8.4:+29690636 MS.gene012116:CDS
GACCGTGCTTGCTATACTTG+TGG 0.551573 8.4:+29691037 MS.gene012116:CDS
CAGGATAACTATGGTGGAGG+CGG 0.552223 8.4:+29690863 MS.gene012116:CDS
TTATCCTGCCTAACCTGAAG+AGG 0.553752 8.4:-29690848 None:intergenic
GGTTTGGTGGTGGCAACAGA+AGG 0.556716 8.4:+29691323 MS.gene012116:CDS
AACGGTGGCGGTGGATATGG+TGG 0.558225 8.4:+29691112 MS.gene012116:CDS
AATGAAGGAGGAAGGTATGA+TGG 0.561449 8.4:+29691268 MS.gene012116:CDS
AGAGGTGGTGAGAGAAGGAA+CGG 0.569558 8.4:+29690902 MS.gene012116:CDS
GATTTAGAGGTGGTGAGAGA+AGG 0.570831 8.4:+29690897 MS.gene012116:CDS
AAAGGCACATGCTTTAACTG+TGG 0.571520 8.4:+29691379 MS.gene012116:CDS
GGTGGTGGTTGTTATACTTG+TGG 0.572889 8.4:+29690929 MS.gene012116:CDS
GGCAACAGAAGGTTTGGCGG+TGG 0.573285 8.4:+29691334 MS.gene012116:CDS
AGGAATGATCGCTCTGGTGG+TGG 0.574103 8.4:+29691001 MS.gene012116:CDS
AAGGCACATGCTTTAACTGT+GGG 0.579793 8.4:+29691380 MS.gene012116:CDS
AATGATAGGAATGATCGCTC+TGG 0.580640 8.4:+29690995 MS.gene012116:CDS
GTTGATGTCACCGGTCCTAA+GGG 0.586474 8.4:+29690821 MS.gene012116:CDS
AAGAGGTTCACCCTTAGGAC+CGG 0.590248 8.4:-29690831 None:intergenic
GGCAATGGAAGGTTTGGTGG+TGG 0.602525 8.4:+29691313 MS.gene012116:CDS
AACCACAAGTATAGCAAGCA+CGG 0.605269 8.4:-29691039 None:intergenic
ATCTTGCTACAGGTGTGGTG+GGG 0.605984 8.4:+29691141 MS.gene012116:CDS
CTTAGGACCGGTGACATCAA+CGG 0.607581 8.4:-29690819 None:intergenic
GGAAGGTATGATGATGGCAA+TGG 0.610842 8.4:+29691298 MS.gene012116:CDS
GGTGGCGGTGGATATGGTGG+AGG 0.611131 8.4:+29691115 MS.gene012116:CDS
ATCATTCCTATCATTCCGAT+CGG 0.613940 8.4:-29690987 None:intergenic
AAGTATAGCAAGCACGGTCA+CGG 0.614873 8.4:-29691033 None:intergenic
TGAGGTGGGTCACATAGCTA+GGG 0.619943 8.4:+29691237 MS.gene012116:CDS
GTCGAGTTCACAATCGCCGA+CGG 0.621401 8.4:+29690776 MS.gene012116:CDS
GGTATGATGATGGCAATGGA+AGG 0.623747 8.4:+29691302 MS.gene012116:CDS
GGCAATGGAAGGTATGATGA+TGG 0.625626 8.4:+29691292 MS.gene012116:CDS
CACATGCTTTAACTGTGGGA+AGG 0.629671 8.4:+29691384 MS.gene012116:CDS
GTTAGGCAGGATAACTATGG+TGG 0.630912 8.4:+29690857 MS.gene012116:CDS
AGGCAGGATAACTATGGTGG+AGG 0.633369 8.4:+29690860 MS.gene012116:CDS
ACTCCTAGTAGCGGAGGCGG+CGG 0.634571 8.4:+29691190 MS.gene012116:CDS
AGGGATTGCAGCAATGAAGG+AGG 0.636247 8.4:+29691256 MS.gene012116:CDS
GGCACATCTTGCTACAGGTG+TGG 0.637876 8.4:+29691136 MS.gene012116:CDS
ATTGCAGCAATGAAGGAGGA+AGG 0.639616 8.4:+29691260 MS.gene012116:CDS
CAATGGTTCAACAACACCAA+AGG 0.639643 8.4:+29690653 MS.gene012116:CDS
TGATACTGGTCACATCGCTA+GGG 0.645119 8.4:+29690952 MS.gene012116:CDS
GGGATTGTGATCGTTCCGAT+CGG 0.645526 8.4:+29690972 MS.gene012116:CDS
TGCGCTACTCCTAGTAGCGG+AGG 0.648929 8.4:+29691184 MS.gene012116:CDS
GCTAGGGATTGCATGCGTGG+AGG 0.656728 8.4:+29691076 MS.gene012116:CDS
GGTGGTGAGAGAAGGAACGG+TGG 0.661941 8.4:+29690905 MS.gene012116:CDS
GCTACTCCTAGTAGCGGAGG+CGG 0.666720 8.4:+29691187 MS.gene012116:CDS
GATTGCGCTACTCCTAGTAG+CGG 0.671173 8.4:+29691181 MS.gene012116:CDS
GATAGGAATGATCGCTCTGG+TGG 0.671256 8.4:+29690998 MS.gene012116:CDS
GGTGGTCGTGGATTTAGAGG+TGG 0.678731 8.4:+29690887 MS.gene012116:CDS
GGAGGAGAGAATCAGCGGCG+TGG 0.687679 8.4:+29690628 MS.gene012116:CDS
GAAGGAGGAAGGTATGATGG+TGG 0.690298 8.4:+29691271 MS.gene012116:CDS
ATGGCGGAGGAGAGAATCAG+CGG 0.694395 8.4:+29690623 MS.gene012116:CDS
GGAGGTAACAACAACAACAA+CGG 0.704702 8.4:+29691094 MS.gene012116:CDS
GGTGGTGCTTGCTATAAGTG+CGG 0.737528 8.4:+29691214 MS.gene012116:CDS
TGCTTGCTATAAGTGCGGTG+AGG 0.749667 8.4:+29691219 MS.gene012116:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTTTGAACATTTTGCTA+GGG + chr8.4:29691060-29691079 MS.gene012116:CDS 25.0%
! GTTCTTTTGAACATTTTGCT+AGG + chr8.4:29691059-29691078 MS.gene012116:CDS 30.0%
ATCATTCCTATCATTCCGAT+CGG - chr8.4:29690990-29691009 None:intergenic 35.0%
TGTTATACTTGTGGTGATAC+TGG + chr8.4:29690938-29690957 MS.gene012116:CDS 35.0%
AACCACAAGTATAGCAAGCA+CGG - chr8.4:29691042-29691061 None:intergenic 40.0%
AAGGCACATGCTTTAACTGT+GGG + chr8.4:29691380-29691399 MS.gene012116:CDS 40.0%
AATGATAGGAATGATCGCTC+TGG + chr8.4:29690995-29691014 MS.gene012116:CDS 40.0%
CAATCTGACATCAGATCTGA+AGG + chr8.4:29690725-29690744 MS.gene012116:CDS 40.0%
CAATGGTTCAACAACACCAA+AGG + chr8.4:29690653-29690672 MS.gene012116:CDS 40.0%
GGAGGTAACAACAACAACAA+CGG + chr8.4:29691094-29691113 MS.gene012116:CDS 40.0%
TTCAACAACACCAAAGGCTT+CGG + chr8.4:29690659-29690678 MS.gene012116:CDS 40.0%
TTTGATGAATCCGAAGCCTT+TGG - chr8.4:29690672-29690691 None:intergenic 40.0%
! AAAGGCACATGCTTTAACTG+TGG + chr8.4:29691379-29691398 MS.gene012116:CDS 40.0%
! AATGAAGGAGGAAGGTATGA+TGG + chr8.4:29691268-29691287 MS.gene012116:CDS 40.0%
! ACATTTTGCAAGGGATTGTG+AGG + chr8.4:29691411-29691430 MS.gene012116:CDS 40.0%
AACAACAACAACAACGGTGG+CGG + chr8.4:29691100-29691119 MS.gene012116:CDS 45.0%
AAGTATAGCAAGCACGGTCA+CGG - chr8.4:29691036-29691055 None:intergenic 45.0%
AGATCTTCGCTATCGTCATC+GGG - chr8.4:29690695-29690714 None:intergenic 45.0%
ATCGTTCCGATCGGAATGAT+AGG + chr8.4:29690981-29691000 MS.gene012116:CDS 45.0%
ATTGCAGCAATGAAGGAGGA+AGG + chr8.4:29691260-29691279 MS.gene012116:CDS 45.0%
CACATGCTTTAACTGTGGGA+AGG + chr8.4:29691384-29691403 MS.gene012116:CDS 45.0%
CAGGTTAGGCAGGATAACTA+TGG + chr8.4:29690854-29690873 MS.gene012116:CDS 45.0%
GAGATCTTCGCTATCGTCAT+CGG - chr8.4:29690696-29690715 None:intergenic 45.0%
GATTTAGAGGTGGTGAGAGA+AGG + chr8.4:29690897-29690916 MS.gene012116:CDS 45.0%
GGTAACAACAACAACAACGG+TGG + chr8.4:29691097-29691116 MS.gene012116:CDS 45.0%
GTTAGGCAGGATAACTATGG+TGG + chr8.4:29690857-29690876 MS.gene012116:CDS 45.0%
TGATACTGGTCACATCGCTA+GGG + chr8.4:29690952-29690971 MS.gene012116:CDS 45.0%
TTATCCTGCCTAACCTGAAG+AGG - chr8.4:29690851-29690870 None:intergenic 45.0%
! GAAGGCAGGACATTTTGCAA+GGG + chr8.4:29691402-29691421 MS.gene012116:CDS 45.0%
! GATGATGGCAATGGAAGGTT+TGG + chr8.4:29691307-29691326 MS.gene012116:CDS 45.0%
! GGATTTCGCTCTCTTTTCGA+AGG + chr8.4:29690746-29690765 MS.gene012116:CDS 45.0%
! GGCAATGGAAGGTATGATGA+TGG + chr8.4:29691292-29691311 MS.gene012116:CDS 45.0%
! GGTGGTGGTTGTTATACTTG+TGG + chr8.4:29690929-29690948 MS.gene012116:CDS 45.0%
!! GGAAGGTATGATGATGGCAA+TGG + chr8.4:29691298-29691317 MS.gene012116:CDS 45.0%
!! GGTATGATGATGGCAATGGA+AGG + chr8.4:29691302-29691321 MS.gene012116:CDS 45.0%
AAGAGGTTCACCCTTAGGAC+CGG - chr8.4:29690834-29690853 None:intergenic 50.0%
ACAATCGCCGACGGTGATAA+CGG + chr8.4:29690785-29690804 MS.gene012116:CDS 50.0%
ACATCTTGCTACAGGTGTGG+TGG + chr8.4:29691139-29691158 MS.gene012116:CDS 50.0%
ACCAAAGCCGTTGATGTCAC+CGG + chr8.4:29690812-29690831 MS.gene012116:CDS 50.0%
ACCTGAAGAGGTTCACCCTT+AGG - chr8.4:29690839-29690858 None:intergenic 50.0%
AGAGGTGGTGAGAGAAGGAA+CGG + chr8.4:29690902-29690921 MS.gene012116:CDS 50.0%
AGGCAGGATAACTATGGTGG+AGG + chr8.4:29690860-29690879 MS.gene012116:CDS 50.0%
AGGGATTGCAGCAATGAAGG+AGG + chr8.4:29691256-29691275 MS.gene012116:CDS 50.0%
ATCTTGCTACAGGTGTGGTG+GGG + chr8.4:29691141-29691160 MS.gene012116:CDS 50.0%
CATCTTGCTACAGGTGTGGT+GGG + chr8.4:29691140-29691159 MS.gene012116:CDS 50.0%
CTTAGGACCGGTGACATCAA+CGG - chr8.4:29690822-29690841 None:intergenic 50.0%
GATAGGAATGATCGCTCTGG+TGG + chr8.4:29690998-29691017 MS.gene012116:CDS 50.0%
GATGGCAATGGAAGGTTTGG+TGG + chr8.4:29691310-29691329 MS.gene012116:CDS 50.0%
GATTGCGCTACTCCTAGTAG+CGG + chr8.4:29691181-29691200 MS.gene012116:CDS 50.0%
GCTAGGGATTGCAGCAATGA+AGG + chr8.4:29691253-29691272 MS.gene012116:CDS 50.0%
GGGATTGTGATCGTTCCGAT+CGG + chr8.4:29690972-29690991 MS.gene012116:CDS 50.0%
GTGATACTGGTCACATCGCT+AGG + chr8.4:29690951-29690970 MS.gene012116:CDS 50.0%
GTTGATGTCACCGGTCCTAA+GGG + chr8.4:29690821-29690840 MS.gene012116:CDS 50.0%
TCCTAAGGGTGAACCTCTTC+AGG + chr8.4:29690835-29690854 MS.gene012116:CDS 50.0%
TGAGGTGGGTCACATAGCTA+GGG + chr8.4:29691237-29691256 MS.gene012116:CDS 50.0%
TGCTATAAGTGCGGTGAGGT+GGG + chr8.4:29691223-29691242 MS.gene012116:CDS 50.0%
TGCTTTAACTGTGGGAAGGC+AGG + chr8.4:29691388-29691407 MS.gene012116:CDS 50.0%
TTGCTATAAGTGCGGTGAGG+TGG + chr8.4:29691222-29691241 MS.gene012116:CDS 50.0%
TTTGCTAGGGATTGCATGCG+TGG + chr8.4:29691073-29691092 MS.gene012116:CDS 50.0%
! AGGGTGAACCTCTTCAGGTT+AGG + chr8.4:29690840-29690859 MS.gene012116:CDS 50.0%
! CAGGATAACTATGGTGGAGG+CGG + chr8.4:29690863-29690882 MS.gene012116:CDS 50.0%
! GAAGGAGGAAGGTATGATGG+TGG + chr8.4:29691271-29691290 MS.gene012116:CDS 50.0%
! GGAAGGCAGGACATTTTGCA+AGG + chr8.4:29691401-29691420 MS.gene012116:CDS 50.0%
! GGTTTTGCCGTTATCACCGT+CGG - chr8.4:29690795-29690814 None:intergenic 50.0%
! TGAACCTCTTCAGGTTAGGC+AGG + chr8.4:29690844-29690863 MS.gene012116:CDS 50.0%
!! GACCGTGCTTGCTATACTTG+TGG + chr8.4:29691037-29691056 MS.gene012116:CDS 50.0%
!! GGAAGGTATGATGGTGGCAA+TGG + chr8.4:29691277-29691296 MS.gene012116:CDS 50.0%
!! GGTATGATGGTGGCAATGGA+AGG + chr8.4:29691281-29691300 MS.gene012116:CDS 50.0%
!! GGTGGTGCTTGCTATAAGTG+CGG + chr8.4:29691214-29691233 MS.gene012116:CDS 50.0%
!! TGCTTGCTATAAGTGCGGTG+AGG + chr8.4:29691219-29691238 MS.gene012116:CDS 50.0%
AACAGAAGGTTTGGCGGTGG+TGG + chr8.4:29691337-29691356 MS.gene012116:CDS 55.0%
ACCGGTGACATCAACGGCTT+TGG - chr8.4:29690816-29690835 None:intergenic 55.0%
AGGAATGATCGCTCTGGTGG+TGG + chr8.4:29691001-29691020 MS.gene012116:CDS 55.0%
CGTTGATGTCACCGGTCCTA+AGG + chr8.4:29690820-29690839 MS.gene012116:CDS 55.0%
GCAAGGGATTGTGAGGCTTC+TGG + chr8.4:29691418-29691437 MS.gene012116:CDS 55.0%
GGCACATCTTGCTACAGGTG+TGG + chr8.4:29691136-29691155 MS.gene012116:CDS 55.0%
GGTGGCAACAGAAGGTTTGG+CGG + chr8.4:29691331-29691350 MS.gene012116:CDS 55.0%
GGTGGTCGTGGATTTAGAGG+TGG + chr8.4:29690887-29690906 MS.gene012116:CDS 55.0%
GTCGAGTTCACAATCGCCGA+CGG + chr8.4:29690776-29690795 MS.gene012116:CDS 55.0%
GTGAGGTGGGTCACATAGCT+AGG + chr8.4:29691236-29691255 MS.gene012116:CDS 55.0%
! AACAACAACAACGGTGGCGG+TGG + chr8.4:29691103-29691122 MS.gene012116:CDS 55.0%
! AACAACGGTGGCGGTGGATA+TGG + chr8.4:29691109-29691128 MS.gene012116:CDS 55.0%
! ATGGCGGAGGAGAGAATCAG+CGG + chr8.4:29690623-29690642 MS.gene012116:CDS 55.0%
! GATAACTATGGTGGAGGCGG+CGG + chr8.4:29690866-29690885 MS.gene012116:CDS 55.0%
! GGTGGTGGCAACAGAAGGTT+TGG + chr8.4:29691328-29691347 MS.gene012116:CDS 55.0%
! GTGGAGGCACATCTTGCTAC+AGG + chr8.4:29691131-29691150 MS.gene012116:CDS 55.0%
!! AATGATCGCTCTGGTGGTGG+TGG + chr8.4:29691004-29691023 MS.gene012116:CDS 55.0%
!! GGCAATGGAAGGTTTGGTGG+TGG + chr8.4:29691313-29691332 MS.gene012116:CDS 55.0%
!! GGTTTGGTGGTGGCAACAGA+AGG + chr8.4:29691323-29691342 MS.gene012116:CDS 55.0%
GAATCAGCGGCGTGGTGCAA+TGG + chr8.4:29690636-29690655 MS.gene012116:CDS 60.0%
GCTAGGGATTGCATGCGTGG+AGG + chr8.4:29691076-29691095 MS.gene012116:CDS 60.0%
GGCAACAGAAGGTTTGGCGG+TGG + chr8.4:29691334-29691353 MS.gene012116:CDS 60.0%
GGCGGTGGTCGTGGATTTAG+AGG + chr8.4:29690884-29690903 MS.gene012116:CDS 60.0%
GGTGAGAGAAGGAACGGTGG+TGG + chr8.4:29690908-29690927 MS.gene012116:CDS 60.0%
GGTGGTGAGAGAAGGAACGG+TGG + chr8.4:29690905-29690924 MS.gene012116:CDS 60.0%
TGCGCTACTCCTAGTAGCGG+AGG + chr8.4:29691184-29691203 MS.gene012116:CDS 60.0%
! AACGGTGGCGGTGGATATGG+TGG + chr8.4:29691112-29691131 MS.gene012116:CDS 60.0%
! AGAAGGTTTGGCGGTGGTGG+TGG + chr8.4:29691340-29691359 MS.gene012116:CDS 60.0%
! GAGAGAAGGAACGGTGGTGG+TGG + chr8.4:29690911-29690930 MS.gene012116:CDS 60.0%
! GCTACTCCTAGTAGCGGAGG+CGG + chr8.4:29691187-29691206 MS.gene012116:CDS 60.0%
! TGCTACAGGTGTGGTGGGGT+TGG + chr8.4:29691145-29691164 MS.gene012116:CDS 60.0%
!! AGAAGGAACGGTGGTGGTGG+TGG + chr8.4:29690914-29690933 MS.gene012116:CDS 60.0%
GGAGGAGAGAATCAGCGGCG+TGG + chr8.4:29690628-29690647 MS.gene012116:CDS 65.0%
GGCGGTCGCGATGGAGGAAA+AGG + chr8.4:29691361-29691380 MS.gene012116:CDS 65.0%
! AACTATGGTGGAGGCGGCGG+TGG + chr8.4:29690869-29690888 MS.gene012116:CDS 65.0%
! ACTCCTAGTAGCGGAGGCGG+CGG + chr8.4:29691190-29691209 MS.gene012116:CDS 65.0%
! GGTGGCGGTGGATATGGTGG+AGG + chr8.4:29691115-29691134 MS.gene012116:CDS 65.0%
!! AGGTTTGGCGGTGGTGGTGG+CGG + chr8.4:29691343-29691362 MS.gene012116:CDS 65.0%
!! GATCGCTCTGGTGGTGGTGG+TGG + chr8.4:29691007-29691026 MS.gene012116:CDS 65.0%
! CCTAGTAGCGGAGGCGGCGG+CGG + chr8.4:29691193-29691212 MS.gene012116:CDS 75.0%
!! GGTGGTGGCGGTCGCGATGG+AGG + chr8.4:29691355-29691374 MS.gene012116:CDS 75.0%
!! GGTGGTGGTGGCGGTCGCGA+TGG + chr8.4:29691352-29691371 MS.gene012116:CDS 75.0%
! CCGCCGCCGCCTCCGCTACT+AGG - chr8.4:29691196-29691215 None:intergenic 80.0%
! GGTGGAGGCGGCGGTGGTCG+TGG + chr8.4:29690875-29690894 MS.gene012116:CDS 80.0%
!! AGTAGCGGAGGCGGCGGCGG+TGG + chr8.4:29691196-29691215 MS.gene012116:CDS 80.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 29690623 29691444 29690623 ID=MS.gene012116
chr8.4 mRNA 29690623 29691444 29690623 ID=MS.gene012116.t1;Parent=MS.gene012116
chr8.4 exon 29690623 29691444 29690623 ID=MS.gene012116.t1.exon1;Parent=MS.gene012116.t1
chr8.4 CDS 29690623 29691444 29690623 ID=cds.MS.gene012116.t1;Parent=MS.gene012116.t1
Gene Sequence

>MS.gene012116

ATGGCGGAGGAGAGAATCAGCGGCGTGGTGCAATGGTTCAACAACACCAAAGGCTTCGGATTCATCAAACCCGATGACGATAGCGAAGATCTCTTCGTTCATCAATCTGACATCAGATCTGAAGGATTTCGCTCTCTTTTCGAAGGCGATCGCGTCGAGTTCACAATCGCCGACGGTGATAACGGCAAAACCAAAGCCGTTGATGTCACCGGTCCTAAGGGTGAACCTCTTCAGGTTAGGCAGGATAACTATGGTGGAGGCGGCGGTGGTCGTGGATTTAGAGGTGGTGAGAGAAGGAACGGTGGTGGTGGTGGTTGTTATACTTGTGGTGATACTGGTCACATCGCTAGGGATTGTGATCGTTCCGATCGGAATGATAGGAATGATCGCTCTGGTGGTGGTGGTGGAGACCGTGACCGTGCTTGCTATACTTGTGGTTCTTTTGAACATTTTGCTAGGGATTGCATGCGTGGAGGTAACAACAACAACAACGGTGGCGGTGGATATGGTGGAGGCACATCTTGCTACAGGTGTGGTGGGGTTGGTCACATAGCAAGAGATTGCGCTACTCCTAGTAGCGGAGGCGGCGGCGGTGGTGCTTGCTATAAGTGCGGTGAGGTGGGTCACATAGCTAGGGATTGCAGCAATGAAGGAGGAAGGTATGATGGTGGCAATGGAAGGTATGATGATGGCAATGGAAGGTTTGGTGGTGGCAACAGAAGGTTTGGCGGTGGTGGTGGCGGTCGCGATGGAGGAAAAGGCACATGCTTTAACTGTGGGAAGGCAGGACATTTTGCAAGGGATTGTGAGGCTTCTGGTTGA
Protein sequence

>MS.gene012116.t1

MAEERISGVVQWFNNTKGFGFIKPDDDSEDLFVHQSDIRSEGFRSLFEGDRVEFTIADGDNGKTKAVDVTGPKGEPLQVRQDNYGGGGGGRGFRGGERRNGGGGGCYTCGDTGHIARDCDRSDRNDRNDRSGGGGGDRDRACYTCGSFEHFARDCMRGGNNNNNGGGGYGGGTSCYRCGGVGHIARDCATPSSGGGGGGACYKCGEVGHIARDCSNEGGRYDGGNGRYDDGNGRFGGGNRRFGGGGGGRDGGKGTCFNCGKAGHFARDCEASG