AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70271

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70271.t1 MTR_8g092620 100.000 272 0 0 1 272 1 272 0.0 565
MS.gene70271.t1 MTR_8g092620 100.000 272 0 0 1 272 8 279 0.0 564
MS.gene70271.t1 MTR_8g092620 100.000 213 0 0 1 213 1 213 5.63e-158 442
MS.gene70271.t1 MTR_4g119620 31.228 285 178 6 7 275 16 298 8.60e-41 146
MS.gene70271.t1 MTR_1g072140 27.778 270 187 4 7 270 16 283 1.05e-33 127
MS.gene70271.t1 MTR_4g104380 28.571 266 178 6 14 271 226 487 4.69e-29 117
MS.gene70271.t1 MTR_3g075400 29.658 263 179 4 14 271 221 482 4.60e-28 114
MS.gene70271.t1 MTR_7g086360 27.007 274 181 7 10 269 47 315 1.56e-23 100
MS.gene70271.t1 MTR_4g102520 27.402 281 186 9 6 272 282 558 7.94e-20 90.9
MS.gene70271.t1 MTR_3g106080 25.941 239 168 4 8 239 409 645 1.10e-19 90.9
MS.gene70271.t1 MTR_2g436510 23.715 253 186 4 7 256 159 407 2.45e-19 89.4
MS.gene70271.t1 MTR_5g090420 22.305 269 205 4 6 270 252 520 2.20e-17 83.6
MS.gene70271.t1 MTR_3g449990 22.642 265 195 5 6 260 258 522 4.67e-16 79.7
MS.gene70271.t1 MTR_1g072740 29.018 224 146 8 6 220 281 500 1.05e-15 78.6
MS.gene70271.t1 MTR_1g069345 24.126 286 202 7 6 283 204 482 1.24e-15 78.2
MS.gene70271.t1 MTR_4g095058 25.225 222 154 3 14 224 326 546 2.20e-14 74.7
MS.gene70271.t1 MTR_4g095058 25.225 222 154 3 14 224 324 544 2.26e-14 74.7
MS.gene70271.t1 MTR_5g016370 24.545 220 154 3 17 225 346 564 2.72e-14 74.3
MS.gene70271.t1 MTR_5g022690 24.878 205 147 3 11 210 272 474 3.42e-14 73.9
MS.gene70271.t1 MTR_5g016350 23.661 224 159 3 13 225 330 552 1.52e-13 72.0
MS.gene70271.t1 MTR_5g016350 23.661 224 159 3 13 225 266 488 1.66e-13 71.6
MS.gene70271.t1 MTR_1g097140 23.345 287 180 9 14 280 119 385 3.64e-13 70.5
MS.gene70271.t1 MTR_1g097140 27.451 204 140 6 14 212 202 402 1.51e-11 65.5
MS.gene70271.t1 MTR_2g087640 24.783 230 148 7 13 222 5 229 3.91e-13 69.7
MS.gene70271.t1 MTR_6g004040 26.400 125 92 0 9 133 92 216 4.30e-13 70.9
MS.gene70271.t1 MTR_6g004040 24.885 217 148 5 49 257 5 214 1.39e-12 69.3
MS.gene70271.t1 MTR_2g012630 25.600 125 93 0 9 133 91 215 5.47e-13 70.5
MS.gene70271.t1 MTR_2g012630 25.311 241 154 7 49 275 4 232 3.34e-12 68.2
MS.gene70271.t1 MTR_7g076230 25.769 260 174 7 11 259 319 570 6.69e-13 70.5
MS.gene70271.t1 MTR_3g052220 25.328 229 129 5 57 282 214 403 7.98e-13 69.7
MS.gene70271.t1 MTR_8g106790 24.345 267 169 8 27 274 27 279 1.09e-12 68.6
MS.gene70271.t1 MTR_1g087120 27.083 144 101 2 9 149 317 459 1.84e-12 69.3
MS.gene70271.t1 MTR_4g071130 27.419 186 128 4 26 209 17 197 7.98e-12 67.0
MS.gene70271.t1 MTR_4g071130 23.228 254 176 6 17 267 50 287 1.26e-11 66.6
MS.gene70271.t1 MTR_2g019400 20.909 220 136 5 39 256 19 202 1.10e-11 65.1
MS.gene70271.t1 MTR_8g068320 22.260 292 193 7 1 271 16 294 3.35e-11 63.9
MS.gene70271.t1 MTR_2g012630 25.600 125 93 0 9 133 91 215 3.37e-11 65.1
MS.gene70271.t1 MTR_8g068320 22.260 292 193 7 1 271 15 293 3.42e-11 63.9
MS.gene70271.t1 MTR_8g038550 22.764 246 143 5 13 255 220 421 3.90e-11 64.7
MS.gene70271.t1 MTR_1g054300 31.405 121 80 2 33 152 342 460 4.55e-11 64.3
MS.gene70271.t1 MTR_2g034500 24.306 144 106 1 9 149 232 375 7.95e-11 63.9
MS.gene70271.t1 MTR_4g069090 26.172 256 159 9 14 255 14 253 8.04e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70271.t1 AT5G64730 77.333 300 62 1 1 300 1 294 1.12e-174 487
MS.gene70271.t1 AT4G02730 27.425 299 199 6 7 298 32 319 1.04e-35 132
MS.gene70271.t1 AT3G49660 28.364 275 184 5 7 270 13 285 3.71e-35 130
MS.gene70271.t1 AT5G50230 28.467 274 184 6 6 271 213 482 9.59e-30 119
MS.gene70271.t1 AT2G43770 28.000 275 179 7 10 270 45 314 1.98e-25 105
MS.gene70271.t1 AT2G43770 25.097 259 176 7 9 254 87 340 4.08e-14 72.8
MS.gene70271.t1 AT5G25150 27.632 228 156 4 8 228 408 633 1.03e-21 96.7
MS.gene70271.t1 AT5G25150 27.632 228 156 4 8 228 408 633 1.29e-21 96.7
MS.gene70271.t1 AT4G15900 25.591 254 180 5 7 256 165 413 2.00e-21 95.5
MS.gene70271.t1 AT3G16650 27.907 258 168 7 7 256 159 406 2.48e-21 95.1
MS.gene70271.t1 AT1G10580 26.502 283 186 10 6 272 270 546 3.05e-20 92.4
MS.gene70271.t1 AT5G67320 23.894 226 160 3 11 225 358 582 8.05e-17 82.0
MS.gene70271.t1 AT2G46290 23.841 302 193 8 13 310 32 300 3.60e-16 79.0
MS.gene70271.t1 AT5G43920 24.915 293 197 11 4 283 210 492 3.13e-15 77.0
MS.gene70271.t1 AT2G41500 29.187 209 133 6 11 210 332 534 3.72e-15 77.0
MS.gene70271.t1 AT2G41500 24.068 295 211 9 26 315 263 549 4.07e-11 64.7
MS.gene70271.t1 AT2G41500 29.187 209 133 6 11 210 332 534 3.72e-15 77.0
MS.gene70271.t1 AT2G41500 24.068 295 211 9 26 315 263 549 4.07e-11 64.7
MS.gene70271.t1 AT5G08560 22.059 272 203 5 6 270 262 531 1.08e-14 75.5
MS.gene70271.t1 AT5G08560 22.059 272 203 5 6 270 262 531 1.08e-14 75.5
MS.gene70271.t1 AT5G08560 22.059 272 203 5 6 270 262 531 1.08e-14 75.5
MS.gene70271.t1 AT2G46280 26.000 250 148 7 13 257 5 222 3.98e-14 72.0
MS.gene70271.t1 AT3G18130 25.000 280 188 7 27 290 27 300 7.62e-14 72.0
MS.gene70271.t1 AT1G48630 24.643 280 189 7 27 290 27 300 7.76e-14 72.0
MS.gene70271.t1 AT2G46280 25.083 303 188 8 13 310 5 273 8.57e-14 71.6
MS.gene70271.t1 AT2G46280 25.083 303 188 8 13 310 5 273 8.57e-14 71.6
MS.gene70271.t1 AT1G61210 25.600 125 93 0 9 133 91 215 1.87e-13 72.0
MS.gene70271.t1 AT1G61210 24.686 239 164 6 48 277 3 234 1.17e-11 66.6
MS.gene70271.t1 AT5G08390 26.400 125 92 0 9 133 92 216 1.90e-13 72.0
MS.gene70271.t1 AT5G08390 25.000 220 150 5 46 257 2 214 1.96e-12 68.9
MS.gene70271.t1 AT1G11160 25.600 125 93 0 9 133 49 173 2.18e-13 72.0
MS.gene70271.t1 AT1G11160 25.600 125 93 0 9 133 91 215 2.32e-13 71.6
MS.gene70271.t1 AT1G11160 25.600 125 93 0 9 133 91 215 2.42e-13 71.6
MS.gene70271.t1 AT1G61210 25.600 125 93 0 9 133 91 215 2.42e-13 71.6
MS.gene70271.t1 AT1G61210 24.686 239 164 6 48 277 3 234 2.79e-11 65.5
MS.gene70271.t1 AT1G61210 25.600 125 93 0 9 133 91 215 2.58e-13 71.6
MS.gene70271.t1 AT1G61210 24.686 239 164 6 48 277 3 234 2.94e-11 65.5
MS.gene70271.t1 AT1G11160 25.600 125 93 0 9 133 91 215 2.60e-13 71.6
MS.gene70271.t1 AT1G11160 23.013 239 142 4 33 271 31 227 3.55e-12 68.2
MS.gene70271.t1 AT5G23430 24.242 198 110 4 9 206 92 249 6.18e-13 70.5
MS.gene70271.t1 AT5G23430 24.424 217 149 5 49 257 5 214 6.85e-11 64.3
MS.gene70271.t1 AT5G23430 24.242 198 110 4 9 206 92 249 6.18e-13 70.5
MS.gene70271.t1 AT5G23430 24.424 217 149 5 49 257 5 214 6.85e-11 64.3
MS.gene70271.t1 AT5G23430 24.242 198 110 4 9 206 92 249 6.65e-13 70.5
MS.gene70271.t1 AT5G23430 24.424 217 149 5 49 257 5 214 7.17e-11 63.9
MS.gene70271.t1 AT5G16750 27.517 149 104 2 12 156 54 202 1.25e-12 69.7
MS.gene70271.t1 AT1G18080 24.231 260 181 6 29 276 27 282 2.82e-12 67.4
MS.gene70271.t1 AT2G21390 24.809 262 162 7 17 267 50 287 3.60e-12 68.2
MS.gene70271.t1 AT5G52820 31.250 128 85 1 2 129 347 471 3.85e-12 67.4
MS.gene70271.t1 AT1G49040 24.242 264 173 10 11 256 836 1090 7.61e-12 67.4
MS.gene70271.t1 AT1G71840 26.636 214 144 7 11 214 190 400 9.18e-12 66.2
MS.gene70271.t1 AT5G60940 23.003 313 201 10 2 278 15 323 1.24e-11 65.5
MS.gene70271.t1 AT5G13480 23.577 246 141 5 13 255 171 372 1.27e-11 66.2
MS.gene70271.t1 AT5G13480 23.577 246 141 5 13 255 148 349 1.56e-11 65.9
MS.gene70271.t1 AT2G47410 24.476 143 105 1 9 148 227 369 1.56e-11 66.2
MS.gene70271.t1 AT2G47410 24.476 143 105 1 9 148 227 369 1.57e-11 66.2
MS.gene70271.t1 AT5G60940 23.003 313 201 10 2 278 107 415 1.57e-11 65.5
MS.gene70271.t1 AT2G47410 24.476 143 105 1 9 148 226 368 1.61e-11 66.2
MS.gene70271.t1 AT5G13480 23.577 246 141 5 13 255 148 349 1.61e-11 65.9
MS.gene70271.t1 AT2G47410 24.476 143 105 1 9 148 45 187 1.67e-11 66.2
MS.gene70271.t1 AT2G47410 24.476 143 105 1 9 148 45 187 1.81e-11 66.2
MS.gene70271.t1 AT2G47410 24.476 143 105 1 9 148 45 187 1.81e-11 66.2
MS.gene70271.t1 AT5G13480 23.577 246 141 5 13 255 160 361 1.92e-11 65.9
MS.gene70271.t1 AT4G18905 28.700 223 124 9 75 271 281 494 4.39e-11 64.3
MS.gene70271.t1 AT1G73720 26.496 117 86 0 17 133 262 378 4.84e-11 64.3
MS.gene70271.t1 AT4G18905 28.700 223 124 9 75 271 291 504 5.84e-11 63.9
MS.gene70271.t1 AT1G62020 23.664 262 165 7 17 267 50 287 6.11e-11 64.3

Find 90 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATGGCTTCGTCTATTTC+TGG 0.109330 4.1:+8940981 MS.gene70271:CDS
GAGATAGACAGGTTTATTAT+TGG 0.252769 4.1:+8938163 MS.gene70271:CDS
TTATCCTCAGTCTTACAAAT+TGG 0.260371 4.1:+8940913 MS.gene70271:intron
AGACTCTACCGTGCGTCTTC+TGG 0.264022 4.1:+8940370 MS.gene70271:CDS
GTAACTGCTAATTGCATTGA+TGG 0.288709 4.1:-8941564 None:intergenic
TGGAACTGTTCTAACCTTAT+TGG 0.295053 4.1:-8940511 None:intergenic
TTCACGGCCATGGGATTTAT+AGG 0.300704 4.1:-8937874 None:intergenic
TAATTTGTTCTGCAGGTAAA+TGG 0.308071 4.1:+8939836 MS.gene70271:intron
TTTCCACACGTGCCATTCAT+AGG 0.308304 4.1:+8941846 MS.gene70271:CDS
CATCTGTAGATGGCACTATT+CGG 0.329739 4.1:+8941778 MS.gene70271:intron
AGATAGACAGGTTTATTATT+GGG 0.345686 4.1:+8938164 MS.gene70271:CDS
TTTATGAAATCAACCTGAAT+TGG 0.354438 4.1:-8939950 None:intergenic
CCATAGCACTGAGCCAATTC+AGG 0.359655 4.1:+8939937 MS.gene70271:CDS
AATACGGATGCTCATGTAAC+TGG 0.400972 4.1:+8940950 MS.gene70271:CDS
GGATGGCTTCGTCTATTTCT+GGG 0.412680 4.1:+8940982 MS.gene70271:CDS
AGAGAAATATCCGATAGCTT+AGG 0.427243 4.1:+8940287 MS.gene70271:intron
GAACTATTACAAGAATATAA+AGG 0.441015 4.1:+8940483 MS.gene70271:CDS
ATGATCAATCATTGCGTGCT+TGG 0.443572 4.1:+8939903 MS.gene70271:CDS
TATTATTGGGATGTTGCAAC+TGG 0.445931 4.1:+8938177 MS.gene70271:CDS
ATATAAAGGACACACCAATA+AGG 0.447715 4.1:+8940497 MS.gene70271:CDS
ATTATCGGAGGAAGTGTTGA+TGG 0.455667 4.1:+8940141 MS.gene70271:CDS
GGATTGCTGCCTTACCAATA+CGG 0.459984 4.1:+8940934 MS.gene70271:CDS
CCTGAATTGGCTCAGTGCTA+TGG 0.460757 4.1:-8939937 None:intergenic
TGATCAATCATTGCGTGCTT+GGG 0.463363 4.1:+8939904 MS.gene70271:CDS
ATCTGTAGATGGCACTATTC+GGG 0.463365 4.1:+8941779 MS.gene70271:intron
TAGGGCAATACAAATCAGTA+TGG 0.468878 4.1:+8941865 MS.gene70271:CDS
GACATTGATATACAGTTGAC+AGG 0.474237 4.1:-8940314 None:intergenic
GAGAAATATCCGATAGCTTA+GGG 0.483127 4.1:+8940288 MS.gene70271:intron
CTGAATTGGCTCAGTGCTAT+GGG 0.484928 4.1:-8939936 None:intergenic
CACGGTAGAGTCTAAGCAAC+CGG 0.486339 4.1:-8940360 None:intergenic
ATAACATGTTCAATTGCAAT+TGG 0.486973 4.1:+8941893 MS.gene70271:CDS
TTCCTGTGGTGGAGATAGAC+AGG 0.490646 4.1:+8938152 MS.gene70271:CDS
TCCACCACAGGAACATAACT+TGG 0.495520 4.1:-8938142 None:intergenic
CTACCGTGCGTCTTCTGGAT+AGG 0.506884 4.1:+8940375 MS.gene70271:CDS
AGAAAATTCCGTGGCCATGA+TGG 0.509380 4.1:+8938210 MS.gene70271:CDS
GATTTGTATTGCCCTATGAA+TGG 0.514200 4.1:-8941858 None:intergenic
TGTATATCAATGTCAAATGA+TGG 0.516600 4.1:+8940323 MS.gene70271:CDS
CATCGCGGACTTCACGGCCA+TGG 0.523799 4.1:-8937884 None:intergenic
TCATCAGTTGTAGTCTCAGC+AGG 0.525593 4.1:+8939878 MS.gene70271:CDS
TTCCACACGTGCCATTCATA+GGG 0.526906 4.1:+8941847 MS.gene70271:CDS
GTAACTGGTGGCTCTGAGGA+TGG 0.527745 4.1:+8940965 MS.gene70271:CDS
CGTGGACATCGCGGACTTCA+CGG 0.528997 4.1:-8937890 None:intergenic
ATCGCGGACTTCACGGCCAT+GGG 0.534189 4.1:-8937883 None:intergenic
TTCTTGTAATAGTTCTCCTG+TGG 0.536142 4.1:-8940475 None:intergenic
GACAGGTTGCCCTAAGCTAT+CGG 0.542218 4.1:-8940297 None:intergenic
GAAGGAGGTGAACGTGCTCA+AGG 0.544763 4.1:+8937734 MS.gene70271:CDS
CATGAGCATCCGTATTGGTA+AGG 0.548846 4.1:-8940943 None:intergenic
AGTTACATGAGCATCCGTAT+TGG 0.550077 4.1:-8940948 None:intergenic
CTTTCTTGTGACAGAACCAC+AGG 0.550660 4.1:+8940459 MS.gene70271:intron
TGTTCAATTGCAATTGGTGT+TGG 0.556358 4.1:+8941899 MS.gene70271:CDS
TAGATGGCACTATTCGGGTA+TGG 0.558909 4.1:+8941784 MS.gene70271:intron
ATCAAAACCTATAAATCCCA+TGG 0.559964 4.1:+8937867 MS.gene70271:CDS
CGAACATTTGATATGCGTAT+CGG 0.561442 4.1:+8940171 MS.gene70271:CDS
GATGGTAACTGCATCCTAGC+CGG 0.565898 4.1:+8940341 MS.gene70271:CDS
AGCACGTTCACCTCCTTCCG+AGG 0.566985 4.1:-8937729 None:intergenic
GTGCTCAAGGGTCACGAAGG+TGG 0.568115 4.1:+8937747 MS.gene70271:CDS
AAGACCGTACCATACGCCTC+TGG 0.569874 4.1:+8937823 MS.gene70271:CDS
AACCTGTCTATCTCCACCAC+AGG 0.576021 4.1:-8938154 None:intergenic
TGCCCTATGAATGGCACGTG+TGG 0.586643 4.1:-8941849 None:intergenic
GATTCCAGAGGCGTATGGTA+CGG 0.592188 4.1:-8937827 None:intergenic
CATTTGATATGCGTATCGGA+AGG 0.593068 4.1:+8940175 MS.gene70271:CDS
GTGAGGATTCCAGAGGCGTA+TGG 0.596579 4.1:-8937832 None:intergenic
TGTGGAAGATCTTCCTCGGA+AGG 0.601091 4.1:+8937716 MS.gene70271:CDS
GCCGCGAGGTTCAACTCCGA+CGG 0.603996 4.1:+8937777 MS.gene70271:CDS
AACTCCAAGTTATGTTCCTG+TGG 0.606172 4.1:+8938138 MS.gene70271:CDS
AAGGAGGTGAACGTGCTCAA+GGG 0.607897 4.1:+8937735 MS.gene70271:CDS
GGCAATTATATCCTCAGTTG+CGG 0.609854 4.1:+8937798 MS.gene70271:CDS
TCCAAGTTATGTTCCTGTGG+TGG 0.613893 4.1:+8938141 MS.gene70271:CDS
TGAGTGTGGAAGATCTTCCT+CGG 0.617239 4.1:+8937712 MS.gene70271:CDS
AGTGAGTATACGTGGTGACG+TGG 0.627059 4.1:-8937908 None:intergenic
ATTCCGTGGCCATGATGGTG+AGG 0.629879 4.1:+8938215 MS.gene70271:CDS
TTGATATGAATTCCACGGTG+AGG 0.633573 4.1:-8937849 None:intergenic
GTACCTCACCATCATGGCCA+CGG 0.640124 4.1:-8938218 None:intergenic
TAGAGTCTAAGCAACCGGCT+AGG 0.640486 4.1:-8940355 None:intergenic
ACGGATGCTCATGTAACTGG+TGG 0.640929 4.1:+8940953 MS.gene70271:CDS
TCTGAACACTTCAAGTAACA+TGG 0.651880 4.1:-8941928 None:intergenic
TCATGTAACTGGTGGCTCTG+AGG 0.656331 4.1:+8940961 MS.gene70271:CDS
CGTGTTATTAGAAAATTCCG+TGG 0.660612 4.1:+8938201 MS.gene70271:CDS
GGAAGATCTTCCTCGGAAGG+AGG 0.664923 4.1:+8937719 MS.gene70271:CDS
ACTGAGGATATAATTGCCGT+CGG 0.667947 4.1:-8937793 None:intergenic
TACGGTCTTTACCGCAACTG+AGG 0.672796 4.1:-8937809 None:intergenic
AGACGTAGAAGCTATGAGTG+TGG 0.679614 4.1:+8937698 None:intergenic
ATACCTATCCAGAAGACGCA+CGG 0.683413 4.1:-8940378 None:intergenic
AACGTGCTCAAGGGTCACGA+AGG 0.685668 4.1:+8937744 MS.gene70271:CDS
ACGTGGTGACGTGGACATCG+CGG 0.701401 4.1:-8937899 None:intergenic
ATTCAGAGCTCACACCTCAG+TGG 0.708054 4.1:+8941033 MS.gene70271:CDS
TTCCACGGTGAGGATTCCAG+AGG 0.719060 4.1:-8937839 None:intergenic
AAGGTGGCGTGCTTGCCGCG+AGG 0.723647 4.1:+8937763 MS.gene70271:CDS
CGCCTCTGGAATCCTCACCG+TGG 0.727086 4.1:+8937837 MS.gene70271:CDS
GCCGTCGGAGTTGAACCTCG+CGG 0.741011 4.1:-8937778 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAATAAAATCAGA+TGG - chr4.1:8939465-8939484 None:intergenic 10.0%
!! ATGTAAAATTTAAACAAAAT+TGG + chr4.1:8938406-8938425 MS.gene70271:intron 10.0%
!! TTTAATAATTTATTCATTCT+AGG + chr4.1:8941068-8941087 MS.gene70271:intron 10.0%
!! ATATTTACTAGTTATATCAT+CGG - chr4.1:8938576-8938595 None:intergenic 15.0%
!! ATCATATATAGATAAAACAT+GGG - chr4.1:8939171-8939190 None:intergenic 15.0%
!! CAATAAAATAAATTGACATA+AGG - chr4.1:8938605-8938624 None:intergenic 15.0%
!! TATCATATATAGATAAAACA+TGG - chr4.1:8939172-8939191 None:intergenic 15.0%
!! TTAACAAAAACAGAAATTAT+CGG + chr4.1:8940126-8940145 MS.gene70271:CDS 15.0%
!!! AATTAGTATATAATTTTTGG+CGG + chr4.1:8941266-8941285 MS.gene70271:intron 15.0%
!!! TTTTGTTTTGTTTACTATTA+GGG + chr4.1:8938113-8938132 MS.gene70271:intron 15.0%
!!! TTTTTTTTTAACAAGCTATT+TGG + chr4.1:8940715-8940734 MS.gene70271:intron 15.0%
!! AAGTAGATCTAAAGAAAAAT+GGG + chr4.1:8938649-8938668 MS.gene70271:intron 20.0%
!! GAACTATTACAAGAATATAA+AGG + chr4.1:8940483-8940502 MS.gene70271:CDS 20.0%
!! GTGAAAATTGCAATAAAATA+CGG + chr4.1:8939621-8939640 MS.gene70271:intron 20.0%
!! TAAAATAAATTGACATAAGG+AGG - chr4.1:8938602-8938621 None:intergenic 20.0%
!! TATTTATTACGAAGAATTTG+AGG + chr4.1:8938305-8938324 MS.gene70271:intron 20.0%
!! TTAATACTGTAGTTAATATG+TGG + chr4.1:8939318-8939337 MS.gene70271:intron 20.0%
!!! AAGAAACTATGGATTAAATA+TGG - chr4.1:8939503-8939522 None:intergenic 20.0%
!!! ACGATACATTTTGAATATAA+AGG - chr4.1:8937961-8937980 None:intergenic 20.0%
!!! AGGTTTGTTACTATATTTAT+AGG + chr4.1:8940195-8940214 MS.gene70271:intron 20.0%
!!! ATTAGTATATAATTTTTGGC+GGG + chr4.1:8941267-8941286 MS.gene70271:intron 20.0%
!!! GATTATGTAGATTTTTGTTT+TGG - chr4.1:8938433-8938452 None:intergenic 20.0%
!!! GTTTTGTTTTGTTTACTATT+AGG + chr4.1:8938112-8938131 MS.gene70271:intron 20.0%
! AGATAGACAGGTTTATTATT+GGG + chr4.1:8938164-8938183 MS.gene70271:CDS 25.0%
! AGTAGATCTAAAGAAAAATG+GGG + chr4.1:8938650-8938669 MS.gene70271:intron 25.0%
! ATAACATGTTCAATTGCAAT+TGG + chr4.1:8941893-8941912 MS.gene70271:CDS 25.0%
! ATAGGTATGTTTACTACATT+TGG + chr4.1:8940393-8940412 MS.gene70271:intron 25.0%
! ATGAGTAATGCTATATATGA+TGG - chr4.1:8940534-8940553 None:intergenic 25.0%
! ATTGATATATGCAAAAGAAG+TGG - chr4.1:8941311-8941330 None:intergenic 25.0%
! ATTTATGAATAACTCAAGCA+CGG - chr4.1:8939229-8939248 None:intergenic 25.0%
! CAAGTAGATCTAAAGAAAAA+TGG + chr4.1:8938648-8938667 MS.gene70271:intron 25.0%
! TAGGTATGTTTACTACATTT+GGG + chr4.1:8940394-8940413 MS.gene70271:intron 25.0%
! TATAAAGGAATGATTGAAGA+AGG - chr4.1:8937946-8937965 None:intergenic 25.0%
! TGTATATCAATGTCAAATGA+TGG + chr4.1:8940323-8940342 MS.gene70271:CDS 25.0%
! TTGAAAACAAAATATGTTCC+CGG - chr4.1:8941172-8941191 None:intergenic 25.0%
! TTGTTAAAAGTAGAAGCAAT+AGG - chr4.1:8939380-8939399 None:intergenic 25.0%
! TTTATGAAATCAACCTGAAT+TGG - chr4.1:8939953-8939972 None:intergenic 25.0%
! TTTCATTGCATAAGAAACTA+TGG - chr4.1:8939514-8939533 None:intergenic 25.0%
!! AAAAAAACATTTTACCACTG+AGG - chr4.1:8941050-8941069 None:intergenic 25.0%
!! TACCTATCTCAAAAAAGTAT+TGG + chr4.1:8938519-8938538 MS.gene70271:intron 25.0%
!!! AAAGAATGAGTTATTTTGTC+AGG + chr4.1:8941710-8941729 MS.gene70271:intron 25.0%
!!! AACCAATACTTTTTTGAGAT+AGG - chr4.1:8938524-8938543 None:intergenic 25.0%
!!! CACTTATTTTCTCATCAATT+AGG + chr4.1:8939989-8940008 MS.gene70271:intron 25.0%
!!! TTAGTATATAATTTTTGGCG+GGG + chr4.1:8941268-8941287 MS.gene70271:intron 25.0%
AAATCCTTTCTAATTGCACA+TGG + chr4.1:8938696-8938715 MS.gene70271:intron 30.0%
AAATGGGGGTTGTATTATAT+TGG + chr4.1:8938665-8938684 MS.gene70271:intron 30.0%
ACAAAAACAGAAATTATCGG+AGG + chr4.1:8940129-8940148 MS.gene70271:CDS 30.0%
AGACTATATATGTTTCCTTG+TGG - chr4.1:8938740-8938759 None:intergenic 30.0%
AGGTATGTTTACTACATTTG+GGG + chr4.1:8940395-8940414 MS.gene70271:intron 30.0%
ATAGCACTACTTACCAATTA+AGG + chr4.1:8940651-8940670 MS.gene70271:intron 30.0%
ATATAAAGGACACACCAATA+AGG + chr4.1:8940497-8940516 MS.gene70271:CDS 30.0%
ATCAAAACCTATAAATCCCA+TGG + chr4.1:8937867-8937886 MS.gene70271:CDS 30.0%
ATGAGAAAATAAGTGAGACA+AGG - chr4.1:8939984-8940003 None:intergenic 30.0%
ATGATAACATCATCTGTAGA+TGG + chr4.1:8941768-8941787 MS.gene70271:intron 30.0%
CATTAACATATCTGCATCTA+TGG + chr4.1:8940759-8940778 MS.gene70271:intron 30.0%
CGAGATGAAATTCTCATATA+CGG + chr4.1:8938474-8938493 MS.gene70271:intron 30.0%
CTTGAACTAATACTTTCACA+CGG + chr4.1:8941136-8941155 MS.gene70271:intron 30.0%
GAGATAGACAGGTTTATTAT+TGG + chr4.1:8938163-8938182 MS.gene70271:CDS 30.0%
GGAAAGAGTAAAGATAAAAG+TGG - chr4.1:8939409-8939428 None:intergenic 30.0%
GTAGATCTAAAGAAAAATGG+GGG + chr4.1:8938651-8938670 MS.gene70271:intron 30.0%
TAAAACTTTATTGCCTGTTC+TGG - chr4.1:8939804-8939823 None:intergenic 30.0%
TATGAGAATTTCATCTCGTA+CGG - chr4.1:8938472-8938491 None:intergenic 30.0%
TGAGAAAATAAGTGAGACAA+GGG - chr4.1:8939983-8940002 None:intergenic 30.0%
TGATTGTGAATTTGTGACAT+AGG - chr4.1:8938848-8938867 None:intergenic 30.0%
TTATCCTCAGTCTTACAAAT+TGG + chr4.1:8940913-8940932 MS.gene70271:intron 30.0%
TTCAGTTACACTACAAACTA+AGG - chr4.1:8938082-8938101 None:intergenic 30.0%
TTGAAGCTTCAACAAAATTG+AGG - chr4.1:8941496-8941515 None:intergenic 30.0%
TTTCATCATATAAAGTTGCG+AGG - chr4.1:8938359-8938378 None:intergenic 30.0%
! AATTAACCCGAAAGTACAAA+TGG - chr4.1:8939148-8939167 None:intergenic 30.0%
! AGAACAGGCAATAAAGTTTT+AGG + chr4.1:8939803-8939822 MS.gene70271:intron 30.0%
! GGTAAGGATTATTTTCATAC+TGG - chr4.1:8941352-8941371 None:intergenic 30.0%
! TATACTTTTGCTAAACTCTG+TGG + chr4.1:8941517-8941536 MS.gene70271:intron 30.0%
! TTTTTGTTGAATGTGCACAT+TGG - chr4.1:8939433-8939452 None:intergenic 30.0%
!! AGGTTTTGATATGAATTCCA+CGG - chr4.1:8937857-8937876 None:intergenic 30.0%
!! TAATTTGTTCTGCAGGTAAA+TGG + chr4.1:8939836-8939855 MS.gene70271:intron 30.0%
!!! ATAAAGTTTTAGGTTCTGAC+AGG + chr4.1:8939813-8939832 MS.gene70271:intron 30.0%
!!! ATGGTGTTTGTTTTTTTTGG+GGG + chr4.1:8938991-8939010 MS.gene70271:intron 30.0%
!!! GATGGTGTTTGTTTTTTTTG+GGG + chr4.1:8938990-8939009 MS.gene70271:intron 30.0%
!!! GGATGGTGTTTGTTTTTTTT+GGG + chr4.1:8938989-8939008 MS.gene70271:intron 30.0%
!!! TTTTGAGATAGGTAAACCAA+AGG - chr4.1:8938513-8938532 None:intergenic 30.0%
AAAGGACAGTGAATCTAACA+GGG - chr4.1:8940443-8940462 None:intergenic 35.0%
ACATATATAGTCTCACCACT+AGG + chr4.1:8938747-8938766 MS.gene70271:intron 35.0%
AGAACCATGTGCAATTAGAA+AGG - chr4.1:8938703-8938722 None:intergenic 35.0%
AGAGAAATATCCGATAGCTT+AGG + chr4.1:8940287-8940306 MS.gene70271:intron 35.0%
AGTGAGTTTGACAAAAATCC+CGG + chr4.1:8941465-8941484 MS.gene70271:intron 35.0%
ATTCTCATATACGGTTCTCA+AGG + chr4.1:8938483-8938502 MS.gene70271:intron 35.0%
CAACATCTAAGTGCATGTTT+GGG + chr4.1:8941437-8941456 MS.gene70271:intron 35.0%
CAATCCAATTTGTAAGACTG+AGG - chr4.1:8940920-8940939 None:intergenic 35.0%
CACTCAAGAACTAAACAAGT+TGG - chr4.1:8938281-8938300 None:intergenic 35.0%
CATCTGCAATCTTCCTTAAT+TGG - chr4.1:8940667-8940686 None:intergenic 35.0%
CATTTGGGGAACATTTACTT+TGG + chr4.1:8940409-8940428 MS.gene70271:intron 35.0%
CGAACATTTGATATGCGTAT+CGG + chr4.1:8940171-8940190 MS.gene70271:CDS 35.0%
CTACAAACTAAGGCTATGTT+TGG - chr4.1:8938072-8938091 None:intergenic 35.0%
CTATATATGTTTCCTTGTGG+TGG - chr4.1:8938737-8938756 None:intergenic 35.0%
CTTTCCTCTACTGTTGTTAT+TGG + chr4.1:8939354-8939373 MS.gene70271:intron 35.0%
GACATTGATATACAGTTGAC+AGG - chr4.1:8940317-8940336 None:intergenic 35.0%
GAGAAAATAAGTGAGACAAG+GGG - chr4.1:8939982-8940001 None:intergenic 35.0%
GAGAAATATCCGATAGCTTA+GGG + chr4.1:8940288-8940307 MS.gene70271:intron 35.0%
GATTTGTATTGCCCTATGAA+TGG - chr4.1:8941861-8941880 None:intergenic 35.0%
GGAATGATTGAAGAAGGTAA+AGG - chr4.1:8937940-8937959 None:intergenic 35.0%
GTAACTGCTAATTGCATTGA+TGG - chr4.1:8941567-8941586 None:intergenic 35.0%
GTTATCATGCAGTTATCCTT+GGG - chr4.1:8941756-8941775 None:intergenic 35.0%
TAGGGCAATACAAATCAGTA+TGG + chr4.1:8941865-8941884 MS.gene70271:CDS 35.0%
TATTATTGGGATGTTGCAAC+TGG + chr4.1:8938177-8938196 MS.gene70271:CDS 35.0%
TGGAACTGTTCTAACCTTAT+TGG - chr4.1:8940514-8940533 None:intergenic 35.0%
TGTTATCATGCAGTTATCCT+TGG - chr4.1:8941757-8941776 None:intergenic 35.0%
TGTTCAATTGCAATTGGTGT+TGG + chr4.1:8941899-8941918 MS.gene70271:CDS 35.0%
TTATCATGCAGTTATCCTTG+GGG - chr4.1:8941755-8941774 None:intergenic 35.0%
TTCTCATATACGGTTCTCAA+GGG + chr4.1:8938484-8938503 MS.gene70271:intron 35.0%
TTCTTGTAATAGTTCTCCTG+TGG - chr4.1:8940478-8940497 None:intergenic 35.0%
TTTCTAATTGCACATGGTTC+TGG + chr4.1:8938702-8938721 MS.gene70271:intron 35.0%
! CGTGTTATTAGAAAATTCCG+TGG + chr4.1:8938201-8938220 MS.gene70271:CDS 35.0%
! GTTTTCAATTCCCTCTTGAT+GGG + chr4.1:8941184-8941203 MS.gene70271:intron 35.0%
! TATTGCCTGTTCTGGATTTA+AGG - chr4.1:8939796-8939815 None:intergenic 35.0%
! TGTTTTCAATTCCCTCTTGA+TGG + chr4.1:8941183-8941202 MS.gene70271:intron 35.0%
! TTCACACGGATTTTCAATTC+CGG + chr4.1:8941150-8941169 MS.gene70271:intron 35.0%
! TTCATTCTAGGAAAAAGCTG+TGG + chr4.1:8941080-8941099 MS.gene70271:intron 35.0%
! TTTTCAATTCCCTCTTGATG+GGG + chr4.1:8941185-8941204 MS.gene70271:intron 35.0%
!! TAAAAAGTACCTCACCATCA+TGG - chr4.1:8938227-8938246 None:intergenic 35.0%
!!! GGGATGGTGTTTGTTTTTTT+TGG + chr4.1:8938988-8939007 MS.gene70271:intron 35.0%
!!! GTTTTTTGTTTGTCCTTCTC+CGG + chr4.1:8939120-8939139 MS.gene70271:intron 35.0%
AACTCCAAGTTATGTTCCTG+TGG + chr4.1:8938138-8938157 MS.gene70271:CDS 40.0%
AAGTGTAAGTTATCACCCCA+AGG + chr4.1:8941737-8941756 MS.gene70271:intron 40.0%
AATACGGATGCTCATGTAAC+TGG + chr4.1:8940950-8940969 MS.gene70271:CDS 40.0%
ACAGAAGAAAAACGTGCTTC+AGG - chr4.1:8940818-8940837 None:intergenic 40.0%
ACTGAGGATATAATTGCCGT+CGG - chr4.1:8937796-8937815 None:intergenic 40.0%
ACTGTCAAGTGTTTGTGGTA+AGG - chr4.1:8941368-8941387 None:intergenic 40.0%
AGTTACATGAGCATCCGTAT+TGG - chr4.1:8940951-8940970 None:intergenic 40.0%
ATAAGCCAGCAGAGAGAAAT+TGG - chr4.1:8940032-8940051 None:intergenic 40.0%
ATCAAAAACCTTGACAGCAC+TGG + chr4.1:8939686-8939705 MS.gene70271:intron 40.0%
ATCTGTAGATGGCACTATTC+GGG + chr4.1:8941779-8941798 MS.gene70271:intron 40.0%
ATGATCAATCATTGCGTGCT+TGG + chr4.1:8939903-8939922 MS.gene70271:CDS 40.0%
CATCTGTAGATGGCACTATT+CGG + chr4.1:8941778-8941797 MS.gene70271:intron 40.0%
CATTTGATATGCGTATCGGA+AGG + chr4.1:8940175-8940194 MS.gene70271:CDS 40.0%
CTGGCTTATTAATCAGGAGT+TGG + chr4.1:8940043-8940062 MS.gene70271:intron 40.0%
CTTCAGGAATTGGTCATTGT+AGG - chr4.1:8940802-8940821 None:intergenic 40.0%
GAAAAACGTGCTTCAGGAAT+TGG - chr4.1:8940812-8940831 None:intergenic 40.0%
GAAAGGACAGTGAATCTAAC+AGG - chr4.1:8940444-8940463 None:intergenic 40.0%
GCAACATCTAAGTGCATGTT+TGG + chr4.1:8941436-8941455 MS.gene70271:intron 40.0%
GGCAATTATATCCTCAGTTG+CGG + chr4.1:8937798-8937817 MS.gene70271:CDS 40.0%
TAAGCCAGCAGAGAGAAATT+GGG - chr4.1:8940031-8940050 None:intergenic 40.0%
TAGGCCAATAACAACAGTAG+AGG - chr4.1:8939361-8939380 None:intergenic 40.0%
TATGAATAACTCAAGCACGG+AGG - chr4.1:8939226-8939245 None:intergenic 40.0%
TCATTGAGAGCTAAAGACCA+AGG - chr4.1:8939744-8939763 None:intergenic 40.0%
TCCGGTTCCATTTGTACTTT+CGG + chr4.1:8939138-8939157 MS.gene70271:intron 40.0%
TCTCAACTGTCAAGTGTTTG+TGG - chr4.1:8941373-8941392 None:intergenic 40.0%
TCTCATATACGGTTCTCAAG+GGG + chr4.1:8938485-8938504 MS.gene70271:intron 40.0%
TGATCAATCATTGCGTGCTT+GGG + chr4.1:8939904-8939923 MS.gene70271:CDS 40.0%
TTATACTGCGTCTGCAATTG+TGG + chr4.1:8939565-8939584 MS.gene70271:intron 40.0%
TTGATATGAATTCCACGGTG+AGG - chr4.1:8937852-8937871 None:intergenic 40.0%
TTGTTGAATGTGCACATTGG+AGG - chr4.1:8939430-8939449 None:intergenic 40.0%
TTTCAATTCCCTCTTGATGG+GGG + chr4.1:8941186-8941205 MS.gene70271:intron 40.0%
TTTCATCTACACTCCCACTA+AGG - chr4.1:8938799-8938818 None:intergenic 40.0%
! CCTGTTCTGGATTTAAGGTT+GGG - chr4.1:8939791-8939810 None:intergenic 40.0%
! TCACACGGATTTTCAATTCC+GGG + chr4.1:8941151-8941170 MS.gene70271:intron 40.0%
! TTCTAGGAAAAAGCTGTGGA+AGG + chr4.1:8941084-8941103 MS.gene70271:intron 40.0%
!! ATTATCGGAGGAAGTGTTGA+TGG + chr4.1:8940141-8940160 MS.gene70271:CDS 40.0%
!! CATAAGAGCACCACAAAAAC+CGG - chr4.1:8939017-8939036 None:intergenic 40.0%
!! TCTCTGCTGGCTTATTAATC+AGG + chr4.1:8940037-8940056 MS.gene70271:intron 40.0%
!! TGACAGGTAATTTGTTCTGC+AGG + chr4.1:8939829-8939848 MS.gene70271:intron 40.0%
!!! GTATATAATTTTTGGCGGGG+TGG + chr4.1:8941271-8941290 MS.gene70271:intron 40.0%
!!! TGTTTGTTTTTTTTGGGGGC+CGG + chr4.1:8938995-8939014 MS.gene70271:intron 40.0%
AAAGACCAAGGTCGCGAAAA+AGG - chr4.1:8939732-8939751 None:intergenic 45.0%
AAGACCAAGGTCGCGAAAAA+GGG - chr4.1:8939731-8939750 None:intergenic 45.0%
AGAAAATTCCGTGGCCATGA+TGG + chr4.1:8938210-8938229 MS.gene70271:CDS 45.0%
AGAGAAGCAGTGAACCTTAG+TGG + chr4.1:8938782-8938801 MS.gene70271:intron 45.0%
AGGATGGCTTCGTCTATTTC+TGG + chr4.1:8940981-8941000 MS.gene70271:CDS 45.0%
AGTACAAATGGAACCGGAGA+AGG - chr4.1:8939136-8939155 None:intergenic 45.0%
AGTCAATACTGTGAAGTCCG+CGG - chr4.1:8941216-8941235 None:intergenic 45.0%
ATACCTATCCAGAAGACGCA+CGG - chr4.1:8940381-8940400 None:intergenic 45.0%
CCACAATTGCAGTCATGCTA+CGG + chr4.1:8939653-8939672 MS.gene70271:intron 45.0%
CCCAACCTTAAATCCAGAAC+AGG + chr4.1:8939788-8939807 MS.gene70271:intron 45.0%
CCGGTTCCATTTGTACTTTC+GGG + chr4.1:8939139-8939158 MS.gene70271:intron 45.0%
CGAAGAACGTCTTGAGATTC+AGG + chr4.1:8938544-8938563 MS.gene70271:intron 45.0%
CTCATATACGGTTCTCAAGG+GGG + chr4.1:8938486-8938505 MS.gene70271:intron 45.0%
CTTTCTTGTGACAGAACCAC+AGG + chr4.1:8940459-8940478 MS.gene70271:intron 45.0%
GAGAAGCAGTGAACCTTAGT+GGG + chr4.1:8938783-8938802 MS.gene70271:intron 45.0%
GAGTTTGACAAAAATCCCGG+TGG + chr4.1:8941468-8941487 MS.gene70271:intron 45.0%
GCTAAACTCTGTGGTGTACT+AGG + chr4.1:8941526-8941545 MS.gene70271:intron 45.0%
GGATTGCTGCCTTACCAATA+CGG + chr4.1:8940934-8940953 MS.gene70271:CDS 45.0%
GTCACAAATCCTCACTCTCA+TGG - chr4.1:8939297-8939316 None:intergenic 45.0%
GTGCAAGGGATACAGGAAAA+AGG - chr4.1:8939088-8939107 None:intergenic 45.0%
TAGATGGCACTATTCGGGTA+TGG + chr4.1:8941784-8941803 MS.gene70271:intron 45.0%
TAGTCTCACCACTAGGAAGT+AGG + chr4.1:8938754-8938773 MS.gene70271:intron 45.0%
TCATCAGTTGTAGTCTCAGC+AGG + chr4.1:8939878-8939897 MS.gene70271:CDS 45.0%
TCCAAGTTATGTTCCTGTGG+TGG + chr4.1:8938141-8938160 MS.gene70271:CDS 45.0%
TCCACCACAGGAACATAACT+TGG - chr4.1:8938145-8938164 None:intergenic 45.0%
TGAGTGTGGAAGATCTTCCT+CGG + chr4.1:8937712-8937731 MS.gene70271:CDS 45.0%
TTCACGGCCATGGGATTTAT+AGG - chr4.1:8937877-8937896 None:intergenic 45.0%
! AACAAAATTGAGGTGCCACC+GGG - chr4.1:8941486-8941505 None:intergenic 45.0%
! ATGCAGTTTTTGTCTGCTGC+GGG + chr4.1:8941602-8941621 MS.gene70271:CDS 45.0%
! CAACAAAATTGAGGTGCCAC+CGG - chr4.1:8941487-8941506 None:intergenic 45.0%
! CATGAGCATCCGTATTGGTA+AGG - chr4.1:8940946-8940965 None:intergenic 45.0%
! CCCGAAAGTACAAATGGAAC+CGG - chr4.1:8939142-8939161 None:intergenic 45.0%
! CGGTTTTTGTGGTGCTCTTA+TGG + chr4.1:8939015-8939034 MS.gene70271:intron 45.0%
! CTGAATTGGCTCAGTGCTAT+GGG - chr4.1:8939939-8939958 None:intergenic 45.0%
! CTGTGGTTCTGTCACAAGAA+AGG - chr4.1:8940461-8940480 None:intergenic 45.0%
! GATGCAGTTTTTGTCTGCTG+CGG + chr4.1:8941601-8941620 MS.gene70271:CDS 45.0%
! GCCTGTTCTGGATTTAAGGT+TGG - chr4.1:8939792-8939811 None:intergenic 45.0%
! GGATGGCTTCGTCTATTTCT+GGG + chr4.1:8940982-8941001 MS.gene70271:CDS 45.0%
! TCTGAAGTCCTACTTCCTAG+TGG - chr4.1:8938765-8938784 None:intergenic 45.0%
! TTCCACACGTGCCATTCATA+GGG + chr4.1:8941847-8941866 MS.gene70271:CDS 45.0%
! TTTCCACACGTGCCATTCAT+AGG + chr4.1:8941846-8941865 MS.gene70271:CDS 45.0%
!! CGGACTTCACAGTATTGACT+TGG + chr4.1:8941216-8941235 MS.gene70271:intron 45.0%
!!! ATAATTTTTGGCGGGGTGGA+TGG + chr4.1:8941275-8941294 MS.gene70271:intron 45.0%
!!! TTAAATTAGTATATAATTTT+TGG + chr4.1:8941263-8941282 MS.gene70271:intron 5.0%
!!! TTTTTTTTTTTTTTTTTGAA+TGG - chr4.1:8939202-8939221 None:intergenic 5.0%
AACCTGTCTATCTCCACCAC+AGG - chr4.1:8938157-8938176 None:intergenic 50.0%
AAGGAGGTGAACGTGCTCAA+GGG + chr4.1:8937735-8937754 MS.gene70271:CDS 50.0%
ACCAGTAGTGCAAGGGATAC+AGG - chr4.1:8939095-8939114 None:intergenic 50.0%
ACCGATACCAGACTCAAGCA+CGG - chr4.1:8938875-8938894 None:intergenic 50.0%
ACGGATGCTCATGTAACTGG+TGG + chr4.1:8940953-8940972 MS.gene70271:CDS 50.0%
ATACCAGACTCAAGCACGGA+GGG - chr4.1:8938871-8938890 None:intergenic 50.0%
ATGTTTCCTTGTGGTGGCAC+TGG - chr4.1:8938731-8938750 None:intergenic 50.0%
ATTCAGAGCTCACACCTCAG+TGG + chr4.1:8941033-8941052 MS.gene70271:CDS 50.0%
CAATTGTGCCAGTGCTGTCA+AGG - chr4.1:8939697-8939716 None:intergenic 50.0%
CACGGTAGAGTCTAAGCAAC+CGG - chr4.1:8940363-8940382 None:intergenic 50.0%
CAGCAAGGAAACAAGCTGTC+AGG - chr4.1:8938965-8938984 None:intergenic 50.0%
CCGTAGCATGACTGCAATTG+TGG - chr4.1:8939656-8939675 None:intergenic 50.0%
GACAGGTTGCCCTAAGCTAT+CGG - chr4.1:8940300-8940319 None:intergenic 50.0%
GATGGTAACTGCATCCTAGC+CGG + chr4.1:8940341-8940360 MS.gene70271:CDS 50.0%
GGAATTGCAAGCTCGTGTTG+CGG - chr4.1:8938827-8938846 None:intergenic 50.0%
GGTGAGAGAGTGAGTATACG+TGG - chr4.1:8937919-8937938 None:intergenic 50.0%
TACGGTCTTTACCGCAACTG+AGG - chr4.1:8937812-8937831 None:intergenic 50.0%
TAGAGTCTAAGCAACCGGCT+AGG - chr4.1:8940358-8940377 None:intergenic 50.0%
TCCGTGCTTGAGTCTGGTAT+CGG + chr4.1:8938871-8938890 MS.gene70271:intron 50.0%
TCCTGTATCCCTTGCACTAC+TGG + chr4.1:8939091-8939110 MS.gene70271:intron 50.0%
TGCACCCAATTTCTCTCTGC+TGG + chr4.1:8940024-8940043 MS.gene70271:intron 50.0%
TGTGGAAGATCTTCCTCGGA+AGG + chr4.1:8937716-8937735 MS.gene70271:CDS 50.0%
TTGCAGTCATGCTACGGTCT+TGG + chr4.1:8939659-8939678 MS.gene70271:intron 50.0%
! ACAGCTTGTTTCCTTGCTGG+AGG + chr4.1:8938966-8938985 MS.gene70271:intron 50.0%
! AGCTTGTTTCCTTGCTGGAG+GGG + chr4.1:8938968-8938987 MS.gene70271:intron 50.0%
! AGTGAGTATACGTGGTGACG+TGG - chr4.1:8937911-8937930 None:intergenic 50.0%
! CAGCTTGTTTCCTTGCTGGA+GGG + chr4.1:8938967-8938986 MS.gene70271:intron 50.0%
! CCATAGCACTGAGCCAATTC+AGG + chr4.1:8939937-8939956 MS.gene70271:CDS 50.0%
! CCTGAATTGGCTCAGTGCTA+TGG - chr4.1:8939940-8939959 None:intergenic 50.0%
! CTGACAGCTTGTTTCCTTGC+TGG + chr4.1:8938963-8938982 MS.gene70271:intron 50.0%
! GATTCCAGAGGCGTATGGTA+CGG - chr4.1:8937830-8937849 None:intergenic 50.0%
! TCATGTAACTGGTGGCTCTG+AGG + chr4.1:8940961-8940980 MS.gene70271:CDS 50.0%
! TTCCTGTGGTGGAGATAGAC+AGG + chr4.1:8938152-8938171 MS.gene70271:CDS 50.0%
!! AGATCCCTTTTTCGCGACCT+TGG + chr4.1:8939724-8939743 MS.gene70271:intron 50.0%
!! GCTTGAGTCTGGTATCGGTA+GGG + chr4.1:8938876-8938895 MS.gene70271:intron 50.0%
!! TCTCTGAGACCATGAGAGTG+AGG + chr4.1:8939285-8939304 MS.gene70271:intron 50.0%
!! TGACAGCACTGGCACAATTG+TGG + chr4.1:8939697-8939716 MS.gene70271:intron 50.0%
!! TGCTTGAGTCTGGTATCGGT+AGG + chr4.1:8938875-8938894 MS.gene70271:intron 50.0%
!! TTTTTGGGGGCCGGTTTTTG+TGG + chr4.1:8939004-8939023 MS.gene70271:intron 50.0%
AAACACCATCCCCTCCAGCA+AGG - chr4.1:8938980-8938999 None:intergenic 55.0%
AACCCAGCACCAGTAGTGCA+AGG - chr4.1:8939103-8939122 None:intergenic 55.0%
AACGTGCTCAAGGGTCACGA+AGG + chr4.1:8937744-8937763 MS.gene70271:CDS 55.0%
AAGACCGTACCATACGCCTC+TGG + chr4.1:8937823-8937842 MS.gene70271:CDS 55.0%
ACCCAGCACCAGTAGTGCAA+GGG - chr4.1:8939102-8939121 None:intergenic 55.0%
AGACTCTACCGTGCGTCTTC+TGG + chr4.1:8940370-8940389 MS.gene70271:CDS 55.0%
ATCCCTTGCACTACTGGTGC+TGG + chr4.1:8939097-8939116 MS.gene70271:intron 55.0%
ATTGCAAGCTCGTGTTGCGG+TGG - chr4.1:8938824-8938843 None:intergenic 55.0%
CTACCGTGCGTCTTCTGGAT+AGG + chr4.1:8940375-8940394 MS.gene70271:CDS 55.0%
CTCTTGATGGGGGATAACCG+CGG + chr4.1:8941196-8941215 MS.gene70271:intron 55.0%
GAAGGAGGTGAACGTGCTCA+AGG + chr4.1:8937734-8937753 MS.gene70271:CDS 55.0%
GATACCAGACTCAAGCACGG+AGG - chr4.1:8938872-8938891 None:intergenic 55.0%
GCGAGGCACATCACACAACA+TGG - chr4.1:8938342-8938361 None:intergenic 55.0%
GCGGTTATCCCCCATCAAGA+GGG - chr4.1:8941197-8941216 None:intergenic 55.0%
GGAAGATCTTCCTCGGAAGG+AGG + chr4.1:8937719-8937738 MS.gene70271:CDS 55.0%
GTACCTCACCATCATGGCCA+CGG - chr4.1:8938221-8938240 None:intergenic 55.0%
TCCCTTGCACTACTGGTGCT+GGG + chr4.1:8939098-8939117 MS.gene70271:intron 55.0%
TGCCCTATGAATGGCACGTG+TGG - chr4.1:8941852-8941871 None:intergenic 55.0%
TGTTTCCTTGCTGGAGGGGA+TGG + chr4.1:8938972-8938991 MS.gene70271:intron 55.0%
TTCCACGGTGAGGATTCCAG+AGG - chr4.1:8937842-8937861 None:intergenic 55.0%
TTTAGCTGGTGGCCTCTGCT+CGG + chr4.1:8938933-8938952 MS.gene70271:intron 55.0%
! ATTCCGTGGCCATGATGGTG+AGG + chr4.1:8938215-8938234 MS.gene70271:CDS 55.0%
! GTGAGGATTCCAGAGGCGTA+TGG - chr4.1:8937835-8937854 None:intergenic 55.0%
!! CAGCACTGGCACAATTGTGG+TGG + chr4.1:8939700-8939719 MS.gene70271:intron 55.0%
!! GTAACTGGTGGCTCTGAGGA+TGG + chr4.1:8940965-8940984 MS.gene70271:CDS 55.0%
!! GTAGGGTTTGTTGTGCGAGG+CGG + chr4.1:8938893-8938912 MS.gene70271:intron 55.0%
!! TCGGTAGGGTTTGTTGTGCG+AGG + chr4.1:8938890-8938909 MS.gene70271:intron 55.0%
!!! TTGCGTGGGGGTGTTTTAGC+TGG + chr4.1:8938919-8938938 MS.gene70271:intron 55.0%
AGCACGTTCACCTCCTTCCG+AGG - chr4.1:8937732-8937751 None:intergenic 60.0%
ATCGCGGACTTCACGGCCAT+GGG - chr4.1:8937886-8937905 None:intergenic 60.0%
CGCGGTTATCCCCCATCAAG+AGG - chr4.1:8941198-8941217 None:intergenic 60.0%
CGGTTCTCAAGGGGGTCCTT+TGG + chr4.1:8938494-8938513 MS.gene70271:intron 60.0%
CGTGGACATCGCGGACTTCA+CGG - chr4.1:8937893-8937912 None:intergenic 60.0%
GTGCTCAAGGGTCACGAAGG+TGG + chr4.1:8937747-8937766 MS.gene70271:CDS 60.0%
TCACCCTCCGTGCTTGAGTC+TGG + chr4.1:8938865-8938884 MS.gene70271:intron 60.0%
TGGACTCCAGTGCCACCACA+AGG + chr4.1:8938722-8938741 MS.gene70271:intron 60.0%
! ACGTGGTGACGTGGACATCG+CGG - chr4.1:8937902-8937921 None:intergenic 60.0%
!!! CGTGGGGGTGTTTTAGCTGG+TGG + chr4.1:8938922-8938941 MS.gene70271:intron 60.0%
CATCGCGGACTTCACGGCCA+TGG - chr4.1:8937887-8937906 None:intergenic 65.0%
GCCGCGAGGTTCAACTCCGA+CGG + chr4.1:8937777-8937796 MS.gene70271:CDS 65.0%
GCCGTCGGAGTTGAACCTCG+CGG - chr4.1:8937781-8937800 None:intergenic 65.0%
GTCAGGCAAACGCCGAGCAG+AGG - chr4.1:8938948-8938967 None:intergenic 65.0%
!! CGCCTCTGGAATCCTCACCG+TGG + chr4.1:8937837-8937856 MS.gene70271:CDS 65.0%
!! GGGTTTGTTGTGCGAGGCGG+TGG + chr4.1:8938896-8938915 MS.gene70271:intron 65.0%
AAGGTGGCGTGCTTGCCGCG+AGG + chr4.1:8937763-8937782 MS.gene70271:CDS 70.0%
GTGCGAGGCGGTGGTTGCGT+GGG + chr4.1:8938905-8938924 MS.gene70271:intron 70.0%
TGCGAGGCGGTGGTTGCGTG+GGG + chr4.1:8938906-8938925 MS.gene70271:intron 70.0%
TGTGCGAGGCGGTGGTTGCG+TGG + chr4.1:8938904-8938923 MS.gene70271:intron 70.0%
GCGAGGCGGTGGTTGCGTGG+GGG + chr4.1:8938907-8938926 MS.gene70271:intron 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 8937711 8941940 8937711 ID=MS.gene70271
chr4.1 mRNA 8937711 8941940 8937711 ID=MS.gene70271.t1;Parent=MS.gene70271
chr4.1 exon 8937711 8937919 8937711 ID=MS.gene70271.t1.exon1;Parent=MS.gene70271.t1
chr4.1 CDS 8937711 8937919 8937711 ID=cds.MS.gene70271.t1;Parent=MS.gene70271.t1
chr4.1 exon 8938134 8938236 8938134 ID=MS.gene70271.t1.exon2;Parent=MS.gene70271.t1
chr4.1 CDS 8938134 8938236 8938134 ID=cds.MS.gene70271.t1;Parent=MS.gene70271.t1
chr4.1 exon 8939851 8939958 8939851 ID=MS.gene70271.t1.exon3;Parent=MS.gene70271.t1
chr4.1 CDS 8939851 8939958 8939851 ID=cds.MS.gene70271.t1;Parent=MS.gene70271.t1
chr4.1 exon 8940087 8940196 8940087 ID=MS.gene70271.t1.exon4;Parent=MS.gene70271.t1
chr4.1 CDS 8940087 8940196 8940087 ID=cds.MS.gene70271.t1;Parent=MS.gene70271.t1
chr4.1 exon 8940289 8940396 8940289 ID=MS.gene70271.t1.exon5;Parent=MS.gene70271.t1
chr4.1 CDS 8940289 8940396 8940289 ID=cds.MS.gene70271.t1;Parent=MS.gene70271.t1
chr4.1 exon 8940473 8940518 8940473 ID=MS.gene70271.t1.exon6;Parent=MS.gene70271.t1
chr4.1 CDS 8940473 8940518 8940473 ID=cds.MS.gene70271.t1;Parent=MS.gene70271.t1
chr4.1 exon 8940923 8941054 8940923 ID=MS.gene70271.t1.exon7;Parent=MS.gene70271.t1
chr4.1 CDS 8940923 8941054 8940923 ID=cds.MS.gene70271.t1;Parent=MS.gene70271.t1
chr4.1 exon 8941548 8941630 8941548 ID=MS.gene70271.t1.exon8;Parent=MS.gene70271.t1
chr4.1 CDS 8941548 8941630 8941548 ID=cds.MS.gene70271.t1;Parent=MS.gene70271.t1
chr4.1 exon 8941787 8941940 8941787 ID=MS.gene70271.t1.exon9;Parent=MS.gene70271.t1
chr4.1 CDS 8941787 8941940 8941787 ID=cds.MS.gene70271.t1;Parent=MS.gene70271.t1
Gene Sequence

>MS.gene70271

ATGAGTGTGGAAGATCTTCCTCGGAAGGAGGTGAACGTGCTCAAGGGTCACGAAGGTGGCGTGCTTGCCGCGAGGTTCAACTCCGACGGCAATTATATCCTCAGTTGCGGTAAAGACCGTACCATACGCCTCTGGAATCCTCACCGTGGAATTCATATCAAAACCTATAAATCCCATGGCCGTGAAGTCCGCGATGTCCACGTCACCACGTATACTCACTCTCTCACCTTTACCTTCTTCAATCATTCCTTTATATTCAAAATGTATCGTAATTTAATTTATGAAAACAGTTTGACTTGTTATAGAAGTTGCTTACATATAAGCACTTTTATGTTAAGTGCTTAGTTAAACTCTTTATCCAAACATAGCCTTAGTTTGTAGTGTAACTGAATTTGTGTGCTGTTTTGTTTTGTTTACTATTAGGGACAACTCCAAGTTATGTTCCTGTGGTGGAGATAGACAGGTTTATTATTGGGATGTTGCAACTGGACGTGTTATTAGAAAATTCCGTGGCCATGATGGTGAGGTACTTTTTATTCTCTTTTTCTTGTACTACTTTGCTAGACACCAACTTGTTTAGTTCTTGAGTGATGCTATTTATTACGAAGAATTTGAGGCACGAAGACGTCCATGTTGTGTGATGTGCCTCGCAACTTTATATGATGAAATGAGTTTTAATTGTTTTAAAATTAAAGATGTAAAATTTAAACAAAATTGGTCCAAAACAAAAATCTACATAATCTTCTCTATGCTTTGAGCCGTACGAGATGAAATTCTCATATACGGTTCTCAAGGGGGTCCTTTGGTTTACCTATCTCAAAAAAGTATTGGTTCGAAGAACGTCTTGAGATTCAGGCGATTGCCGATGATATAACTAGTAAATATGTTCCTCCTTATGTCAATTTATTTTATTGTTTATGATACTATCAGAGTGAAACAAGTAGATCTAAAGAAAAATGGGGGTTGTATTATATTGGTAACAAGTAAATCCTTTCTAATTGCACATGGTTCTGGACTCCAGTGCCACCACAAGGAAACATATATAGTCTCACCACTAGGAAGTAGGACTTCAGAGAAGCAGTGAACCTTAGTGGGAGTGTAGATGAAAGACCACCGCAACACGAGCTTGCAATTCCTATGTCACAAATTCACAATCACCCTCCGTGCTTGAGTCTGGTATCGGTAGGGTTTGTTGTGCGAGGCGGTGGTTGCGTGGGGGTGTTTTAGCTGGTGGCCTCTGCTCGGCGTTTGCCTGACAGCTTGTTTCCTTGCTGGAGGGGATGGTGTTTGTTTTTTTTGGGGGCCGGTTTTTGTGGTGCTCTTATGGTGTTAGCTATGTTTCTTTTTTCTCGTTTTTGCTCGTGTTTTTTTGTGCCTTTTTCCTGTATCCCTTGCACTACTGGTGCTGGGTTTTTTGTTTGTCCTTCTCCGGTTCCATTTGTACTTTCGGGTTAATTCCCATGTTTTATCTATATATGATATATTTTGCCATTCAAAAAAAAAAAAAAAAAACCTCCGTGCTTGAGTTATTCATAAATTTTAACATTATTCTTATTTCTTCTTTTGTCTTGTTTTCTCTGAGACCATGAGAGTGAGGATTTGTGACATTAATACTGTAGTTAATATGTGGTTTTATCTTTACTCTTTCCTCTACTGTTGTTATTGGCCTATTGCTTCTACTTTTAACAAATGATACCACTTTTATCTTTACTCTTTCCTCCAATGTGCACATTCAACAAAAATAAAATGATCCATCTGATTTTATTTTATTTTTCTCAAATACTAGAAACCATATTTAATCCATAGTTTCTTATGCAATGAAAAAAAAATATTAAAACTTAGATATTCAAGAGTTTATACTGCGTCTGCAATTGTGGTTGCATTGATGTTGCGTAGCAGTTTTTGATGTTGTGAAAATTGCAATAAAATACGGCAAATGTAACCACAATTGCAGTCATGCTACGGTCTTGGAGACATCAAAAACCTTGACAGCACTGGCACAATTGTGGTGGCAGATCCCTTTTTCGCGACCTTGGTCTTTAGCTCTCAATGATTGTCATCATTTTGATATATGTTGCCCAACCTTAAATCCAGAACAGGCAATAAAGTTTTAGGTTCTGACAGGTAATTTGTTCTGCAGGTAAATGGTGTAAAATTCAATGAGTATTCATCAGTTGTAGTCTCAGCAGGATATGATCAATCATTGCGTGCTTGGGACTGCAGATCCCATAGCACTGAGCCAATTCAGGTTGATTTCATAAACTCATTCCCCTTGTCTCACTTATTTTCTCATCAATTAGGTATTACATGTGATGCACCCAATTTCTCTCTGCTGGCTTATTAATCAGGAGTTGGAAACTTGTAAATGATGTGCAGATTATTGACACATTCGCAGATAGTGTGATGTCTGTTTGTTTAACAAAAACAGAAATTATCGGAGGAAGTGTTGATGGAACTGTTCGAACATTTGATATGCGTATCGGAAGGTTTGTTACTATATTTATAGGAAACTTCAAGACTTGTATTTTTCATGATTCACGAATTTTTGTTTACTAAGCTTCTCTATTTTGTTCAACAGAGAAATATCCGATAGCTTAGGGCAACCTGTCAACTGTATATCAATGTCAAATGATGGTAACTGCATCCTAGCCGGTTGCTTAGACTCTACCGTGCGTCTTCTGGATAGGTATGTTTACTACATTTGGGGAACATTTACTTTGGTTCTATATCCCTGTTAGATTCACTGTCCTTTCTTGTGACAGAACCACAGGAGAACTATTACAAGAATATAAAGGACACACCAATAAGGTTAGAACAGTTCCATCATATATAGCATTACTCATTGAAGATGTTCGAACAGTATAGCATTACTTAGCATTACATTTAAAAAAGTTACATTTAAAAAGTTGAGAGCATGCATCTGCATCTGCAATCTCATATATAGCACTACTTACCAATTAAGGAAGATTGCAGATGCATTCTCTCAACTTTTTAAATGTAACTTTTTTTTTTTAACAAGCTATTTGGATGCAACTTGATATTCATTGTCATTAACATATCTGCATCTATGGAATACTGTTCTTTGATTCCTACAATGACCAATTCCTGAAGCACGTTTTTCTTCTGTTTGAAGTAACTTCACTATATTCAATTCAAACTTTTTGACTTGAGCATTTTCTGAAATTTTATTGTTTCTATTGAATTATCCTCAGTCTTACAAATTGGATTGCTGCCTTACCAATACGGATGCTCATGTAACTGGTGGCTCTGAGGATGGCTTCGTCTATTTCTGGGATCTTGTAGATGCATCTGTTGTTTCAAAATTCAGAGCTCACACCTCAGTGGTAAAATGTTTTTTTTAATAATTTATTCATTCTAGGAAAAAGCTGTGGAAGGATAATACTGAAAGAACGTTACAGAGCTTTCTTGAACTAATACTTTCACACGGATTTTCAATTCCGGGAACATATTTTGTTTTCAATTCCCTCTTGATGGGGGATAACCGCGGACTTCACAGTATTGACTTGGTTATAAAATCATACTTGTTTTCATTTAAATTAGTATATAATTTTTGGCGGGGTGGATGGTGTTTGAGAGCCACTTCTTTTGCATATATCAATTGATATTGAATATGAATTCCAGTATGAAAATAATCCTTACCACAAACACTTGACAGTTGAGATAGAATGATAATTTAGTTGTAAACAAAGATCTTTCTCTCTTGTGCAACATCTAAGTGCATGTTTGGGTTTAAAGTGAGTTTGACAAAAATCCCGGTGGCACCTCAATTTTGTTGAAGCTTCAAATATACTTTTGCTAAACTCTGTGGTGTACTAGGAATCAGTCAAGCTAACCATCAATGCAATTAGCAGTTACTATTGCTTATCATTGATGCAGTTTTTGTCTGCTGCGGGAACTTTGTTATTGCATTAATTAGTCTATCTTACACTTCATTTTATTATTGTAAAAGTTTAGTCTAGACAATGTCATCATTACCTAAAAGAATGAGTTATTTTGTCAGGTAACAAGTGTAAGTTATCACCCCAAGGATAACTGCATGATAACATCATCTGTAGATGGCACTATTCGGGTATGGAAGACATAAAGAACAACATGCAAACAAGTTTCTCTGCTGTTTCCACACGTGCCATTCATAGGGCAATACAAATCAGTATGGCGATGATAACATGTTCAATTGCAATTGGTGTTGGCACACACCATGTTACTTGA
Protein sequence

>MS.gene70271.t1

MSVEDLPRKEVNVLKGHEGGVLAARFNSDGNYILSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTTDNSKLCSCGGDRQVYYWDVATGRVIRKFRGHDGEVNGVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDTFADSVMSVCLTKTEIIGGSVDGTVRTFDMRIGREISDSLGQPVNCISMSNDGNCILAGCLDSTVRLLDRTTGELLQEYKGHTNKSYKLDCCLTNTDAHVTGGSEDGFVYFWDLVDASVVSKFRAHTSVESVKLTINAISSYYCLSLMQFLSAAGTLWHYSGMEDIKNNMQTSFSAVSTRAIHRAIQISMAMITCSIAIGVGTHHVT