AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012180.t1 MTR_4g124790 97.297 222 5 1 1 222 1 221 9.86e-157 433
MS.gene012180.t1 MTR_7g105830 30.052 193 113 6 51 222 38 229 3.76e-15 72.8
MS.gene012180.t1 MTR_1g105090 31.410 156 95 4 78 222 77 231 9.49e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012180.t1 AT3G26060 78.771 179 35 1 43 221 40 215 1.45e-99 288
MS.gene012180.t1 AT3G26060 78.333 180 35 2 43 221 40 216 1.14e-97 283
MS.gene012180.t1 AT3G26060 85.135 148 22 0 74 221 6 153 1.58e-94 273
MS.gene012180.t1 AT5G06290 34.177 158 88 5 78 222 83 237 4.04e-18 80.5
MS.gene012180.t1 AT5G06290 35.256 156 89 4 78 222 83 237 5.58e-18 80.5
MS.gene012180.t1 AT3G11630 33.974 156 91 4 78 222 76 230 6.64e-17 77.4

Find 57 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCACTCAACAAGGTAAA+TGG 0.285138 8.1:+7265419 None:intergenic
CACAGGTTTCCCTTTGTACT+TGG 0.303836 8.1:+7266931 None:intergenic
GGAGTGCCTGGCGATTTCTT+TGG 0.309530 8.1:-7265371 MS.gene012180:CDS
AAATGGAAGCTTGTACTTCT+TGG 0.312396 8.1:+7265436 None:intergenic
TACGGAAGCATTAAAGGCTT+TGG 0.346601 8.1:+7265237 None:intergenic
GATTTCTTTGGATCATTGCC+TGG 0.346798 8.1:-7265359 MS.gene012180:CDS
AATTGGTAGGGAGAGTGATC+AGG 0.347523 8.1:+7267264 None:intergenic
GCAGAGGTTGTTGGGATAAG+TGG 0.361226 8.1:-7265558 MS.gene012180:CDS
CTCTTCATCTTCCATGGCTA+AGG 0.389484 8.1:-7267291 MS.gene012180:CDS
GACTCACTGTCTTGCCATCC+TGG 0.400499 8.1:+7266957 None:intergenic
CTTACCTGTTTGGTACAGCC+AGG 0.410343 8.1:+7266878 None:intergenic
AAGCAGGAGCAGAGGTTGTT+GGG 0.412350 8.1:-7265566 MS.gene012180:CDS
AGGTGTAGAAGAAGTGGTTT+TGG 0.413165 8.1:+7267139 None:intergenic
CAGCCAGGGGTCTCATCAGC+AGG 0.442678 8.1:+7266893 None:intergenic
AAGGCTTTGGAGTAGTTTCA+AGG 0.453537 8.1:+7265250 None:intergenic
ACTTTGCTCTTCATCTTCCA+TGG 0.463410 8.1:-7267297 MS.gene012180:CDS
AATAAATGTGGGGAAAGAAT+TGG 0.464668 8.1:+7267247 None:intergenic
AGGAAAGAGTGGGGAGTGCC+TGG 0.465381 8.1:-7265383 MS.gene012180:CDS
AAAGCAGGAGCAGAGGTTGT+TGG 0.469493 8.1:-7265567 MS.gene012180:CDS
TACCCTGCTGATGAGACCCC+TGG 0.472668 8.1:-7266896 MS.gene012180:CDS
ATTGGTAGGGAGAGTGATCA+GGG 0.476674 8.1:+7267265 None:intergenic
ACACCTTCTTCATTCAAAAG+AGG 0.479717 8.1:-7267122 MS.gene012180:CDS
GACCCCTGGCTGTACCAAAC+AGG 0.480415 8.1:-7266882 MS.gene012180:intron
TTACCTGTTTGGTACAGCCA+GGG 0.504190 8.1:+7266879 None:intergenic
TATGAGAAGTTCAAGAAAGC+AGG 0.505377 8.1:-7265582 MS.gene012180:CDS
TGAGTCTCTCCAAGTACAAA+GGG 0.527088 8.1:-7266940 MS.gene012180:CDS
TTTACCTTGTTGAGTGATGA+GGG 0.533791 8.1:-7265416 MS.gene012180:CDS
ATTTACCTTGTTGAGTGATG+AGG 0.534596 8.1:-7265417 MS.gene012180:CDS
TGAAGAAGGTGTAGAAGAAG+TGG 0.541255 8.1:+7267133 None:intergenic
AATGATCCAAAGAAATCGCC+AGG 0.551351 8.1:+7265365 None:intergenic
GCAAATGAGCAGGTGAGTAA+AGG 0.552307 8.1:-7267010 MS.gene012180:intron
ATTTCTTTGGATCATTGCCT+GGG 0.553738 8.1:-7265358 MS.gene012180:CDS
TGGTCTTTCAACGTGAAAGC+CGG 0.553851 8.1:+7266977 None:intergenic
TAACAAGGTAAGGAAAGAGT+GGG 0.554128 8.1:-7265393 MS.gene012180:CDS
GGCTTTCACGTTGAAAGACC+AGG 0.554297 8.1:-7266975 MS.gene012180:CDS
GTTCAAGAAAGCAGGAGCAG+AGG 0.567377 8.1:-7265574 MS.gene012180:CDS
ATATGAATCCCTAAAAGCGC+AGG 0.567632 8.1:+7265602 None:intergenic
GTGATGAGGGTAACAAGGTA+AGG 0.567983 8.1:-7265403 MS.gene012180:CDS
ATGTGGGGAAAGAATTGGTA+GGG 0.570965 8.1:+7267252 None:intergenic
TACCTGTTTGGTACAGCCAG+GGG 0.571231 8.1:+7266880 None:intergenic
GAGTAAAGGTTCAAAGCCAC+CGG 0.580619 8.1:-7266996 MS.gene012180:CDS
TCTTTCAACGTGAAAGCCGG+TGG 0.591762 8.1:+7266980 None:intergenic
GTAACAAGGTAAGGAAAGAG+TGG 0.594096 8.1:-7265394 MS.gene012180:CDS
GTGAGTCTCTCCAAGTACAA+AGG 0.604417 8.1:-7266941 MS.gene012180:CDS
GGGTAGAAATAAACAACCAC+AGG 0.604779 8.1:+7266914 None:intergenic
GATCAGGGAAACCTTAGCCA+TGG 0.605970 8.1:+7267280 None:intergenic
AGAACATAAGTCTCTCTCCC+AGG 0.610669 8.1:+7265341 None:intergenic
TGGAAGAATGGGATAACTTG+AGG 0.612538 8.1:+7267165 None:intergenic
AATGTGGGGAAAGAATTGGT+AGG 0.616864 8.1:+7267251 None:intergenic
GTTGAGTGATGAGGGTAACA+AGG 0.618582 8.1:-7265408 MS.gene012180:CDS
AACAAGGTAAGGAAAGAGTG+GGG 0.648925 8.1:-7265392 MS.gene012180:CDS
AGACGATTCTTCCTCTCACA+AGG 0.659575 8.1:-7265535 MS.gene012180:intron
AGCCAGGGGTCTCATCAGCA+GGG 0.668167 8.1:+7266894 None:intergenic
GTTACCCTCATCACTCAACA+AGG 0.674521 8.1:+7265412 None:intergenic
TTCACGTTGAAAGACCAGGA+TGG 0.687451 8.1:-7266971 MS.gene012180:CDS
CAAGTACAAAGGGAAACCTG+TGG 0.709350 8.1:-7266930 MS.gene012180:CDS
TTTGAGGGTGAATAAATGTG+GGG 0.731556 8.1:+7267237 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTGTTTACCTAAAT+AGG - chr8.1:7266481-7266500 MS.gene012180:intron 15.0%
!! AATAATCAGTAGATAAATAT+TGG + chr8.1:7266776-7266795 None:intergenic 15.0%
!! TAAAGTTTATAATCCATAAA+TGG - chr8.1:7265738-7265757 MS.gene012180:intron 15.0%
!!! TTTTATGAATTTATTATTGC+AGG - chr8.1:7266927-7266946 MS.gene012180:CDS 15.0%
!!! TCATAACTACTTTTTGTAAT+AGG - chr8.1:7266053-7266072 MS.gene012180:intron 20.0%
!!! TGATATAATTGATTCCAATA+TGG - chr8.1:7266843-7266862 MS.gene012180:intron 20.0%
! AAACAATGCATATCCATTTA+TGG + chr8.1:7265754-7265773 None:intergenic 25.0%
! ACTTATGTTCTTGACAAAAA+TGG - chr8.1:7267223-7267242 MS.gene012180:CDS 25.0%
! ATGAATCAATAGATCATAGT+TGG - chr8.1:7266381-7266400 MS.gene012180:intron 25.0%
! ATTGTTTGTTCTAGTGAAAA+GGG - chr8.1:7265767-7265786 MS.gene012180:intron 25.0%
! CCAAAAAATAGAGAATTGAA+TGG + chr8.1:7265367-7265386 None:intergenic 25.0%
! CTAACTAATTAACTTCCAAA+AGG + chr8.1:7265982-7266001 None:intergenic 25.0%
! GCAAATACTTGATATAGTTA+AGG - chr8.1:7266898-7266917 MS.gene012180:CDS 25.0%
! TAAAACACCCTGTTTAAAAA+CGG + chr8.1:7266534-7266553 None:intergenic 25.0%
! TATGTTAGATTGTTAGAGTT+TGG - chr8.1:7265812-7265831 MS.gene012180:intron 25.0%
!! AAAATTAAGTCAGTGCTATT+AGG - chr8.1:7266336-7266355 MS.gene012180:intron 25.0%
!! AAATTAAGTCAGTGCTATTA+GGG - chr8.1:7266337-7266356 MS.gene012180:intron 25.0%
!! AATTGATTCCAATATGGTAA+AGG - chr8.1:7266849-7266868 MS.gene012180:intron 25.0%
!! ATCATAGTTGGTATATATGT+TGG - chr8.1:7266393-7266412 MS.gene012180:intron 25.0%
!!! AATTTGTTGGTTAAGTTAGT+CGG - chr8.1:7266010-7266029 MS.gene012180:intron 25.0%
!!! CAATGCATTGGTTAATTAAT+TGG + chr8.1:7267077-7267096 None:intergenic 25.0%
!!! CCATTCAATTCTCTATTTTT+TGG - chr8.1:7265364-7265383 MS.gene012180:CDS 25.0%
!!! CTTTTGGAAGTTAATTAGTT+AGG - chr8.1:7265980-7265999 MS.gene012180:intron 25.0%
!!! TAAAGCAATTCTAAAATGTG+TGG + chr8.1:7266710-7266729 None:intergenic 25.0%
AAAACACCCTGTTTAAAAAC+GGG + chr8.1:7266533-7266552 None:intergenic 30.0%
AAGACTAATATTCTGGGTAA+TGG + chr8.1:7266238-7266257 None:intergenic 30.0%
AATAAATGTGGGGAAAGAAT+TGG + chr8.1:7265308-7265327 None:intergenic 30.0%
AATATTCATTGTCATTGCAC+CGG + chr8.1:7266444-7266463 None:intergenic 30.0%
ACATATGTACAAGACTTTCA+AGG + chr8.1:7266184-7266203 None:intergenic 30.0%
AGATAGCAAGACTAATATTC+TGG + chr8.1:7266245-7266264 None:intergenic 30.0%
AGTTTGGTTAGTATTTGGAA+TGG - chr8.1:7265828-7265847 MS.gene012180:intron 30.0%
ATTGTTTACCTAAATAGGAC+AGG - chr8.1:7266486-7266505 MS.gene012180:intron 30.0%
CAACCATGCAACAATAATTT+GGG - chr8.1:7266265-7266284 MS.gene012180:intron 30.0%
CAATAAATTCAAAATGCAGG+TGG + chr8.1:7265522-7265541 None:intergenic 30.0%
CATTGTTTGTTCTAGTGAAA+AGG - chr8.1:7265766-7265785 MS.gene012180:intron 30.0%
CTAACAGTAGTTGTTTATGA+AGG - chr8.1:7266816-7266835 MS.gene012180:intron 30.0%
CTTCATAAACAACTACTGTT+AGG + chr8.1:7266818-7266837 None:intergenic 30.0%
GAGAAATGAAATATTGCAGA+AGG + chr8.1:7266688-7266707 None:intergenic 30.0%
GATAGCAAGACTAATATTCT+GGG + chr8.1:7266244-7266263 None:intergenic 30.0%
GTTAGAGTTTGGTTAGTATT+TGG - chr8.1:7265823-7265842 MS.gene012180:intron 30.0%
TCAACCATGCAACAATAATT+TGG - chr8.1:7266264-7266283 MS.gene012180:intron 30.0%
TGCCAATAAATTCAAAATGC+AGG + chr8.1:7265525-7265544 None:intergenic 30.0%
TTGTTTACCTAAATAGGACA+GGG - chr8.1:7266487-7266506 MS.gene012180:intron 30.0%
! AAACCTCTTTTGAATGAAGA+AGG + chr8.1:7265436-7265455 None:intergenic 30.0%
! ATTGTGTGAATAAAGTACCT+TGG + chr8.1:7265467-7265486 None:intergenic 30.0%
! CACCTGCATTTTGAATTTAT+TGG - chr8.1:7265520-7265539 MS.gene012180:intron 30.0%
!! AGTGATGATGATATGTTTTG+AGG + chr8.1:7265334-7265353 None:intergenic 30.0%
!! GTGATGATGATATGTTTTGA+GGG + chr8.1:7265333-7265352 None:intergenic 30.0%
!! TGGTATATATGTTGGTTTAG+AGG - chr8.1:7266401-7266420 MS.gene012180:intron 30.0%
!! TTTTGAGGGTGAATAAATGT+GGG + chr8.1:7265319-7265338 None:intergenic 30.0%
AAATGGAAGCTTGTACTTCT+TGG + chr8.1:7267119-7267138 None:intergenic 35.0%
ACACCTTCTTCATTCAAAAG+AGG - chr8.1:7265430-7265449 MS.gene012180:CDS 35.0%
ATTCCAATATGGTAAAGGCA+TGG - chr8.1:7266854-7266873 MS.gene012180:intron 35.0%
ATTCCATGCCTTTACCATAT+TGG + chr8.1:7266860-7266879 None:intergenic 35.0%
ATTTACCTTGTTGAGTGATG+AGG - chr8.1:7267135-7267154 MS.gene012180:CDS 35.0%
ATTTCTTTGGATCATTGCCT+GGG - chr8.1:7267194-7267213 MS.gene012180:CDS 35.0%
ATTTGAGAACTCTTCTCATG+TGG + chr8.1:7266748-7266767 None:intergenic 35.0%
CAACTACTGTTAGGAATTAG+AGG + chr8.1:7266809-7266828 None:intergenic 35.0%
CAATGCATTGCATGAAATGT+AGG - chr8.1:7267087-7267106 MS.gene012180:intron 35.0%
CACTCTTTCATCTCTTTACA+AGG + chr8.1:7266100-7266119 None:intergenic 35.0%
CTACATTTCATGCAATGCAT+TGG + chr8.1:7267089-7267108 None:intergenic 35.0%
GAAAAGGCTTCAAGCATTAT+CGG + chr8.1:7266564-7266583 None:intergenic 35.0%
GAATTTATTGGCAAATGAGC+AGG - chr8.1:7265532-7265551 MS.gene012180:intron 35.0%
GCATTACTGCTAAGATATTG+TGG + chr8.1:7266314-7266333 None:intergenic 35.0%
GTTCCCAAATTATTGTTGCA+TGG + chr8.1:7266271-7266290 None:intergenic 35.0%
TAACAAGGTAAGGAAAGAGT+GGG - chr8.1:7267159-7267178 MS.gene012180:CDS 35.0%
TATGAGAAGTTCAAGAAAGC+AGG - chr8.1:7266970-7266989 MS.gene012180:CDS 35.0%
TCATCACTCAACAAGGTAAA+TGG + chr8.1:7267136-7267155 None:intergenic 35.0%
TGTACAAGACTTTCAAGGAA+AGG + chr8.1:7266179-7266198 None:intergenic 35.0%
TTTACCTTGTTGAGTGATGA+GGG - chr8.1:7267136-7267155 MS.gene012180:CDS 35.0%
TTTGAGGGTGAATAAATGTG+GGG + chr8.1:7265318-7265337 None:intergenic 35.0%
! ATAATGCTTGAAGCCTTTTC+AGG - chr8.1:7266564-7266583 MS.gene012180:intron 35.0%
! TGGTTAGTATTTGGAATGGA+TGG - chr8.1:7265832-7265851 MS.gene012180:intron 35.0%
!! AAGAGGTTTCATTTTTGCCA+AGG - chr8.1:7265447-7265466 MS.gene012180:intron 35.0%
!! TTAGAGCCCGTTTTTAAACA+GGG - chr8.1:7266524-7266543 MS.gene012180:intron 35.0%
!! TTTAGAGCCCGTTTTTAAAC+AGG - chr8.1:7266523-7266542 MS.gene012180:intron 35.0%
!!! AGAAGAAGTGGTTTTGGAAA+TGG + chr8.1:7265410-7265429 None:intergenic 35.0%
!!! CCTGTTTTTACAGCTTTGTA+GGG - chr8.1:7266595-7266614 MS.gene012180:intron 35.0%
!!! CTTTTTTCTCCTTACCTGTT+TGG + chr8.1:7265687-7265706 None:intergenic 35.0%
!!! GGTTTTGGAAATGGAAGAAT+GGG + chr8.1:7265401-7265420 None:intergenic 35.0%
!!! GTTTTGAGGGTGAATAAATG+TGG + chr8.1:7265320-7265339 None:intergenic 35.0%
!!! TGGTTTTGGAAATGGAAGAA+TGG + chr8.1:7265402-7265421 None:intergenic 35.0%
AACAAGGTAAGGAAAGAGTG+GGG - chr8.1:7267160-7267179 MS.gene012180:CDS 40.0%
AACTTGATGTGCAGTTACTG+TGG - chr8.1:7266288-7266307 MS.gene012180:intron 40.0%
AATGATCCAAAGAAATCGCC+AGG + chr8.1:7267190-7267209 None:intergenic 40.0%
AATGTGGGGAAAGAATTGGT+AGG + chr8.1:7265304-7265323 None:intergenic 40.0%
ACTTTGCTCTTCATCTTCCA+TGG - chr8.1:7265255-7265274 MS.gene012180:CDS 40.0%
ATGTGGGGAAAGAATTGGTA+GGG + chr8.1:7265303-7265322 None:intergenic 40.0%
CCCTACAAAGCTGTAAAAAC+AGG + chr8.1:7266598-7266617 None:intergenic 40.0%
GATTTCTTTGGATCATTGCC+TGG - chr8.1:7267193-7267212 MS.gene012180:CDS 40.0%
GGGTAGAAATAAACAACCAC+AGG + chr8.1:7265641-7265660 None:intergenic 40.0%
GTAACAAGGTAAGGAAAGAG+TGG - chr8.1:7267158-7267177 MS.gene012180:CDS 40.0%
GTTAGGTCTCGTCAATTTGT+TGG - chr8.1:7265997-7266016 MS.gene012180:intron 40.0%
TACTTCCCTTGTGTTAGTTC+TGG - chr8.1:7265952-7265971 MS.gene012180:intron 40.0%
TCCTCTCACAAGGTAAAACT+TGG - chr8.1:7267027-7267046 MS.gene012180:intron 40.0%
TGAGTCTCTCCAAGTACAAA+GGG - chr8.1:7265612-7265631 MS.gene012180:intron 40.0%
TGGAAGAATGGGATAACTTG+AGG + chr8.1:7265390-7265409 None:intergenic 40.0%
TGTTCTAGTGAAAAGGGAAG+AGG - chr8.1:7265773-7265792 MS.gene012180:intron 40.0%
! AGGTGTAGAAGAAGTGGTTT+TGG + chr8.1:7265416-7265435 None:intergenic 40.0%
! ATATGAATCCCTAAAAGCGC+AGG + chr8.1:7266953-7266972 None:intergenic 40.0%
! GTCTCATCGATATGCTTTTC+AGG + chr8.1:7267283-7267302 None:intergenic 40.0%
! TCCAAGTTTTACCTTGTGAG+AGG + chr8.1:7267031-7267050 None:intergenic 40.0%
! TGAAGAAGGTGTAGAAGAAG+TGG + chr8.1:7265422-7265441 None:intergenic 40.0%
! TGGGTAATGGCTGTTTGTTA+GGG + chr8.1:7266225-7266244 None:intergenic 40.0%
!! AAGGCTTTGGAGTAGTTTCA+AGG + chr8.1:7267305-7267324 None:intergenic 40.0%
!!! CATCGATATGCTTTTCAGGT+TGG + chr8.1:7267279-7267298 None:intergenic 40.0%
!!! GCCTGTTTTTACAGCTTTGT+AGG - chr8.1:7266594-7266613 MS.gene012180:intron 40.0%
AATTGGTAGGGAGAGTGATC+AGG + chr8.1:7265291-7265310 None:intergenic 45.0%
ACACGATCCCTGTCCTATTT+AGG + chr8.1:7266497-7266516 None:intergenic 45.0%
AGAACATAAGTCTCTCTCCC+AGG + chr8.1:7267214-7267233 None:intergenic 45.0%
AGACGATTCTTCCTCTCACA+AGG - chr8.1:7267017-7267036 MS.gene012180:intron 45.0%
AGCTGTAAAAACAGGCTACC+CGG + chr8.1:7266590-7266609 None:intergenic 45.0%
AGGCTTCAAGCATTATCGGA+CGG + chr8.1:7266560-7266579 None:intergenic 45.0%
ATTGGTAGGGAGAGTGATCA+GGG + chr8.1:7265290-7265309 None:intergenic 45.0%
CAAGTACAAAGGGAAACCTG+TGG - chr8.1:7265622-7265641 MS.gene012180:intron 45.0%
CACAGGTTTCCCTTTGTACT+TGG + chr8.1:7265624-7265643 None:intergenic 45.0%
CTCTTCATCTTCCATGGCTA+AGG - chr8.1:7265261-7265280 MS.gene012180:CDS 45.0%
GAGTAAAGGTTCAAAGCCAC+CGG - chr8.1:7265556-7265575 MS.gene012180:CDS 45.0%
GCAAATGAGCAGGTGAGTAA+AGG - chr8.1:7265542-7265561 MS.gene012180:CDS 45.0%
GTCTGCCAGAACTAACACAA+GGG + chr8.1:7265960-7265979 None:intergenic 45.0%
GTGAAAAGGGAAGAGGTGAA+TGG - chr8.1:7265780-7265799 MS.gene012180:intron 45.0%
GTGAGTCTCTCCAAGTACAA+AGG - chr8.1:7265611-7265630 MS.gene012180:intron 45.0%
GTGATGAGGGTAACAAGGTA+AGG - chr8.1:7267149-7267168 MS.gene012180:CDS 45.0%
GTTACCCTCATCACTCAACA+AGG + chr8.1:7267143-7267162 None:intergenic 45.0%
GTTGAGTGATGAGGGTAACA+AGG - chr8.1:7267144-7267163 MS.gene012180:CDS 45.0%
TGGTCTTTCAACGTGAAAGC+CGG + chr8.1:7265578-7265597 None:intergenic 45.0%
TTACCTGTTTGGTACAGCCA+GGG + chr8.1:7265676-7265695 None:intergenic 45.0%
TTCACGTTGAAAGACCAGGA+TGG - chr8.1:7265581-7265600 MS.gene012180:CDS 45.0%
! CTGGGTAATGGCTGTTTGTT+AGG + chr8.1:7266226-7266245 None:intergenic 45.0%
! TAGAGGCACAAGAGTCAATG+TGG - chr8.1:7266418-7266437 MS.gene012180:intron 45.0%
!!! GTTAGTTCTGGCAGACCTTT+TGG - chr8.1:7265964-7265983 MS.gene012180:intron 45.0%
AAAGCAGGAGCAGAGGTTGT+TGG - chr8.1:7266985-7267004 MS.gene012180:CDS 50.0%
AAGCAGGAGCAGAGGTTGTT+GGG - chr8.1:7266986-7267005 MS.gene012180:CDS 50.0%
CTGGCTGTACCAAACAGGTA+AGG - chr8.1:7265675-7265694 MS.gene012180:intron 50.0%
CTTACCTGTTTGGTACAGCC+AGG + chr8.1:7265677-7265696 None:intergenic 50.0%
GATCAGGGAAACCTTAGCCA+TGG + chr8.1:7265275-7265294 None:intergenic 50.0%
GATCTTCTACATCCTCACCG+AGG + chr8.1:7266625-7266644 None:intergenic 50.0%
GCAGAGGTTGTTGGGATAAG+TGG - chr8.1:7266994-7267013 MS.gene012180:CDS 50.0%
GCTTCAAGCATTATCGGACG+GGG + chr8.1:7266558-7266577 None:intergenic 50.0%
GGCTTCAAGCATTATCGGAC+GGG + chr8.1:7266559-7266578 None:intergenic 50.0%
GGCTTTCACGTTGAAAGACC+AGG - chr8.1:7265577-7265596 MS.gene012180:CDS 50.0%
GGTCTGCCAGAACTAACACA+AGG + chr8.1:7265961-7265980 None:intergenic 50.0%
GTTCAAGAAAGCAGGAGCAG+AGG - chr8.1:7266978-7266997 MS.gene012180:CDS 50.0%
TACCTGTTTGGTACAGCCAG+GGG + chr8.1:7265675-7265694 None:intergenic 50.0%
TCTTTCAACGTGAAAGCCGG+TGG + chr8.1:7265575-7265594 None:intergenic 50.0%
! ATTGCAGGCCTGCGCTTTTA+GGG - chr8.1:7266942-7266961 MS.gene012180:CDS 50.0%
! CAGCTTTGTAGGGTCAACCT+CGG - chr8.1:7266605-7266624 MS.gene012180:intron 50.0%
! TATTGCAGGCCTGCGCTTTT+AGG - chr8.1:7266941-7266960 MS.gene012180:CDS 50.0%
!! TGCTTGAAGCCTTTTCAGGC+CGG - chr8.1:7266568-7266587 MS.gene012180:intron 50.0%
GACTCACTGTCTTGCCATCC+TGG + chr8.1:7265598-7265617 None:intergenic 55.0%
GGCACAAGAGTCAATGTGGC+CGG - chr8.1:7266422-7266441 MS.gene012180:intron 55.0%
TTGTAGGGTCAACCTCGGTG+AGG - chr8.1:7266610-7266629 MS.gene012180:intron 55.0%
! GGAGTGCCTGGCGATTTCTT+TGG - chr8.1:7267181-7267200 MS.gene012180:CDS 55.0%
!! GCTTGAAGCCTTTTCAGGCC+GGG - chr8.1:7266569-7266588 MS.gene012180:intron 55.0%
ACAGGCTACCCGGCCTGAAA+AGG + chr8.1:7266580-7266599 None:intergenic 60.0%
AGCCAGGGGTCTCATCAGCA+GGG + chr8.1:7265661-7265680 None:intergenic 60.0%
GACCCCTGGCTGTACCAAAC+AGG - chr8.1:7265670-7265689 MS.gene012180:intron 60.0%
TACCCTGCTGATGAGACCCC+TGG - chr8.1:7265656-7265675 MS.gene012180:intron 60.0%
!! AGGAAAGAGTGGGGAGTGCC+TGG - chr8.1:7267169-7267188 MS.gene012180:CDS 60.0%
CAGCCAGGGGTCTCATCAGC+AGG + chr8.1:7265662-7265681 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 7265247 7267327 7265247 ID=MS.gene012180
chr8.1 mRNA 7265247 7267327 7265247 ID=MS.gene012180.t1;Parent=MS.gene012180
chr8.1 exon 7267106 7267327 7267106 ID=MS.gene012180.t1.exon1;Parent=MS.gene012180.t1
chr8.1 CDS 7267106 7267327 7267106 ID=cds.MS.gene012180.t1;Parent=MS.gene012180.t1
chr8.1 exon 7266883 7267020 7266883 ID=MS.gene012180.t1.exon2;Parent=MS.gene012180.t1
chr8.1 CDS 7266883 7267020 7266883 ID=cds.MS.gene012180.t1;Parent=MS.gene012180.t1
chr8.1 exon 7265536 7265625 7265536 ID=MS.gene012180.t1.exon3;Parent=MS.gene012180.t1
chr8.1 CDS 7265536 7265625 7265536 ID=cds.MS.gene012180.t1;Parent=MS.gene012180.t1
chr8.1 exon 7265247 7265465 7265247 ID=MS.gene012180.t1.exon4;Parent=MS.gene012180.t1
chr8.1 CDS 7265247 7265465 7265247 ID=cds.MS.gene012180.t1;Parent=MS.gene012180.t1
Gene Sequence

>MS.gene012180

ATGTTATCACTTTGCTCTTCATCTTCCATGGCTAAGGTTTCCCTGATCACTCTCCCTACCAATTCTTTCCCCACATTTATTCACCCTCAAAACATATCATCATCACTTACTTCTACTCCATTCAATTCTCTATTTTTTGGCCTCAAGTTATCCCATTCTTCCATTTCCAAAACCACTTCTTCTACACCTTCTTCATTCAAAAGAGGTTTCATTTTTGCCAAGGTACTTTATTCACACAATATACTTTTTTTCTCTGTCTTACATGTTACAATCCACCTGCATTTTGAATTTATTGGCAAATGAGCAGGTGAGTAAAGGTTCAAAGCCACCGGCTTTCACGTTGAAAGACCAGGATGGCAAGACAGTGAGTCTCTCCAAGTACAAAGGGAAACCTGTGGTTGTTTATTTCTACCCTGCTGATGAGACCCCTGGCTGTACCAAACAGGTAAGGAGAAAAAAGCATGTATTCTAGTGTTATATATTCTAATGTCTAAAGTTTATAATCCATAAATGGATATGCATTGTTTGTTCTAGTGAAAAGGGAAGAGGTGAATGGTGTACATGTTATGTTAGATTGTTAGAGTTTGGTTAGTATTTGGAATGGATGGATAGTTAGTTGCTTTATATATATATAGAGCACACTGTAGCTTTCAATATTAGTTATTTAAGTGTCGTTAGTAATTCTGATGCGACTATAGTGTGTAGTACTTCCCTTGTGTTAGTTCTGGCAGACCTTTTGGAAGTTAATTAGTTAGGTCTCGTCAATTTGTTGGTTAAGTTAGTCGGTGAATCAGTTATAACTAACTTCATAACTACTTTTTGTAATAGGATAGTATAGAAACTGATATATCCTTGTAAAGAGATGAAAGAGTGACATTTTCATTGAATCGTTGATCATGAGAGAAAATTGCGTGCTCAAGTGAAATTTTCCTTTCCTTGAAAGTCTTGTACATATGTTGCGTTCAACTTTCAATACCCTAACAAACAGCCATTACCCAGAATATTAGTCTTGCTATCTCAACCATGCAACAATAATTTGGGAACTTGATGTGCAGTTACTGTGGCCACAATATCTTAGCAGTAATGCATAAAATTAAGTCAGTGCTATTAGGGAAAAGAAAAAACATTGAATACATGAATCAATAGATCATAGTTGGTATATATGTTGGTTTAGAGGCACAAGAGTCAATGTGGCCGGTGCAATGACAATGAATATTTTTGTTCGTGTTATAAAAAAAAATTGTTTACCTAAATAGGACAGGGATCGTGTAGTATTTTTAGAGCCCGTTTTTAAACAGGGTGTTTTAGCCCCGTCCGATAATGCTTGAAGCCTTTTCAGGCCGGGTAGCCTGTTTTTACAGCTTTGTAGGGTCAACCTCGGTGAGGATGTAGAAGATCAATCTCTGAACTTCGATAAATCTTGTGTGTTAATTCTTTACCTTCTGCAATATTTCATTTCTCCACACATTTTAGAATTGCTTTATCTTGTCTGTTCAATCCACATGAGAAGAGTTCTCAAATTTTGTCCAATATTTATCTACTGATTATTAGCACGTTGTCCTCTAATTCCTAACAGTAGTTGTTTATGAAGGATCATGATATAATTGATTCCAATATGGTAAAGGCATGGAATTAGATTATGCAGAGTAGAGCAAATACTTGATATAGTTAAGGAGACAATTTTATGAATTTATTATTGCAGGCCTGCGCTTTTAGGGATTCATATGAGAAGTTCAAGAAAGCAGGAGCAGAGGTTGTTGGGATAAGTGGAGACGATTCTTCCTCTCACAAGGTAAAACTTGGAATTTTCACTGCATAATTTTTGTGCCAATTAATTAACCAATGCATTGCATGAAATGTAGGCATTTGCCAAGAAGTACAAGCTTCCATTTACCTTGTTGAGTGATGAGGGTAACAAGGTAAGGAAAGAGTGGGGAGTGCCTGGCGATTTCTTTGGATCATTGCCTGGGAGAGAGACTTATGTTCTTGACAAAAATGGTGTCGTTCAGCTTGTATACAACAATCAGTTCCAACCTGAAAAGCATATCGATGAGACCTTGAAACTACTCCAAAGCCTTTAA
Protein sequence

>MS.gene012180.t1

MLSLCSSSSMAKVSLITLPTNSFPTFIHPQNISSSLTSTPFNSLFFGLKLSHSSISKTTSSTPSSFKRGFIFAKVSKGSKPPAFTLKDQDGKTVSLSKYKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVVGISGDDSSSHKAFAKKYKLPFTLLSDEGNKVRKEWGVPGDFFGSLPGRETYVLDKNGVVQLVYNNQFQPEKHIDETLKLLQSL