Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012350.t1 | XP_003610060.1 | 97.2 | 391 | 11 | 0 | 1 | 391 | 4 | 394 | 3.30E-221 | 777.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012350.t1 | Q9SW00 | 54.7 | 380 | 163 | 4 | 11 | 389 | 10 | 381 | 3.0e-114 | 413.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012350.t1 | G7JUB2 | 97.2 | 391 | 11 | 0 | 1 | 391 | 6 | 396 | 2.4e-221 | 777.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012350 | MS.gene49595 | PPI |
| MS.gene032779 | MS.gene012350 | PPI |
| MS.gene066288 | MS.gene012350 | PPI |
| MS.gene99026 | MS.gene012350 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012350.t1 | MTR_4g127490 | 97.187 | 391 | 11 | 0 | 1 | 391 | 6 | 396 | 0.0 | 786 |
| MS.gene012350.t1 | MTR_4g127490 | 97.187 | 391 | 11 | 0 | 1 | 391 | 4 | 394 | 0.0 | 785 |
| MS.gene012350.t1 | MTR_2g037790 | 69.351 | 385 | 112 | 3 | 6 | 390 | 5 | 383 | 0.0 | 545 |
| MS.gene012350.t1 | MTR_2g037790 | 69.351 | 385 | 112 | 3 | 6 | 390 | 8 | 386 | 0.0 | 545 |
| MS.gene012350.t1 | MTR_2g037770 | 67.632 | 380 | 118 | 3 | 11 | 390 | 7 | 381 | 0.0 | 520 |
| MS.gene012350.t1 | MTR_4g127510 | 61.518 | 382 | 140 | 5 | 11 | 390 | 5 | 381 | 3.61e-167 | 473 |
| MS.gene012350.t1 | MTR_2g037770 | 71.622 | 296 | 81 | 2 | 11 | 306 | 7 | 299 | 7.81e-150 | 427 |
| MS.gene012350.t1 | MTR_2g037770 | 71.622 | 296 | 81 | 2 | 11 | 306 | 8 | 300 | 9.96e-150 | 426 |
| MS.gene012350.t1 | MTR_2g037770 | 71.970 | 264 | 71 | 2 | 11 | 274 | 7 | 267 | 3.92e-133 | 382 |
| MS.gene012350.t1 | MTR_4g064110 | 24.925 | 333 | 219 | 11 | 50 | 362 | 79 | 400 | 9.47e-17 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012350.t1 | AT4G25850 | 54.103 | 390 | 169 | 5 | 1 | 389 | 1 | 381 | 4.91e-145 | 417 |
| MS.gene012350.t1 | AT5G57240 | 53.525 | 383 | 167 | 5 | 11 | 391 | 5 | 378 | 1.79e-144 | 415 |
| MS.gene012350.t1 | AT5G57240 | 53.525 | 383 | 167 | 5 | 11 | 391 | 5 | 378 | 1.79e-144 | 415 |
| MS.gene012350.t1 | AT5G57240 | 53.525 | 383 | 167 | 5 | 11 | 391 | 5 | 378 | 1.79e-144 | 415 |
| MS.gene012350.t1 | AT4G25850 | 54.737 | 380 | 163 | 4 | 11 | 389 | 112 | 483 | 3.62e-143 | 416 |
| MS.gene012350.t1 | AT4G25860 | 52.051 | 390 | 178 | 4 | 1 | 389 | 1 | 382 | 3.04e-140 | 405 |
| MS.gene012350.t1 | AT5G57240 | 50.245 | 408 | 167 | 6 | 11 | 391 | 5 | 403 | 1.93e-138 | 401 |
| MS.gene012350.t1 | AT5G57240 | 50.245 | 408 | 167 | 6 | 11 | 391 | 5 | 403 | 1.93e-138 | 401 |
| MS.gene012350.t1 | AT4G25860 | 52.368 | 380 | 172 | 4 | 11 | 389 | 5 | 376 | 3.50e-138 | 399 |
| MS.gene012350.t1 | AT4G25850 | 56.934 | 274 | 109 | 5 | 1 | 272 | 1 | 267 | 2.16e-102 | 304 |
| MS.gene012350.t1 | AT5G59420 | 24.179 | 335 | 219 | 11 | 50 | 362 | 78 | 399 | 8.90e-14 | 73.2 |
| MS.gene012350.t1 | AT5G02100 | 23.724 | 333 | 223 | 11 | 50 | 362 | 51 | 372 | 1.33e-13 | 72.4 |
| MS.gene012350.t1 | AT5G02100 | 23.724 | 333 | 223 | 11 | 50 | 362 | 78 | 399 | 1.85e-13 | 72.0 |
| MS.gene012350.t1 | AT5G02100 | 29.586 | 169 | 110 | 5 | 50 | 216 | 78 | 239 | 7.30e-13 | 69.3 |
Find 107 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTGAATCAGCTCTTATT+TGG | 0.134175 | 8.3:-3693433 | MS.gene012350:CDS |
| TAGCATTGAAGCTGTGATTT+TGG | 0.181358 | 8.3:+3694797 | None:intergenic |
| TGGCTTTGTCAGAACAATTA+TGG | 0.224454 | 8.3:+3695217 | None:intergenic |
| CTCCCAGTCATTGCTAATAA+TGG | 0.230830 | 8.3:+3693394 | None:intergenic |
| ACCACACGTCCTACATCTTT+TGG | 0.266880 | 8.3:-3694665 | MS.gene012350:CDS |
| AACTGAATCAGCTCTTATTT+GGG | 0.293352 | 8.3:-3693432 | MS.gene012350:CDS |
| GCTCCTTATAATCCCATTCT+TGG | 0.296392 | 8.3:-3694638 | MS.gene012350:CDS |
| GATGCAAAAGAAGTCATTTC+AGG | 0.299497 | 8.3:-3693615 | MS.gene012350:CDS |
| GGGAATAGTAAGTTGATTAA+AGG | 0.299802 | 8.3:-3693922 | MS.gene012350:CDS |
| CTGTTGTTGATCAGGGTGTT+TGG | 0.313493 | 8.3:-3693457 | MS.gene012350:intron |
| ATTAGAATTCTTCCAGTTCC+AGG | 0.322110 | 8.3:-3694042 | MS.gene012350:CDS |
| GGGTTGGGATTGTTAATATA+CGG | 0.332141 | 8.3:-3694011 | MS.gene012350:CDS |
| GAAACTTTGGAACAGCTTGC+TGG | 0.333697 | 8.3:+3694495 | None:intergenic |
| AGCAGGTACCCATGTATTAA+TGG | 0.333978 | 8.3:+3693229 | None:intergenic |
| GGCTTTGTCAGAACAATTAT+GGG | 0.356535 | 8.3:+3695218 | None:intergenic |
| TTCCAGGAGTTAGTTGGGTT+GGG | 0.357671 | 8.3:-3694026 | MS.gene012350:CDS |
| TCTCCAAGAATGGGATTATA+AGG | 0.360041 | 8.3:+3694635 | None:intergenic |
| AGGAAAACATTGAAATGATA+TGG | 0.367856 | 8.3:-3694520 | MS.gene012350:CDS |
| AGCAGATCTCACTAACTTAC+AGG | 0.386865 | 8.3:-3695093 | MS.gene012350:intron |
| TCCAGTTCCAGGAGTTAGTT+GGG | 0.392005 | 8.3:-3694031 | MS.gene012350:CDS |
| AAGCTGAAGTTCATGGCAAA+AGG | 0.393826 | 8.3:-3694122 | MS.gene012350:CDS |
| GTTCTAAAACTCAGAAATCA+TGG | 0.418453 | 8.3:-3694099 | MS.gene012350:CDS |
| GGAATAGTAAGTTGATTAAA+GGG | 0.418791 | 8.3:-3693921 | MS.gene012350:CDS |
| AGCATTGAAGCTGAAGTTCA+TGG | 0.426779 | 8.3:-3694129 | MS.gene012350:CDS |
| TTTGAGATACCGCGAAACTT+TGG | 0.430109 | 8.3:+3694482 | None:intergenic |
| TTCCAGTTCCAGGAGTTAGT+TGG | 0.435182 | 8.3:-3694032 | MS.gene012350:CDS |
| ACCTCTGCATCCTTGACAAT+GGG | 0.436791 | 8.3:+3693582 | None:intergenic |
| GTTCCAGGAGTTAGTTGGGT+TGG | 0.438089 | 8.3:-3694027 | MS.gene012350:CDS |
| GATTCAACTTCCAATGAGAA+TGG | 0.439825 | 8.3:+3695197 | None:intergenic |
| CTTGTCATCTGTTGCGTGGA+GGG | 0.441844 | 8.3:+3694541 | None:intergenic |
| TATATGACATTGATGGTCAA+TGG | 0.448483 | 8.3:-3693867 | MS.gene012350:CDS |
| GCAGGTACCCATGTATTAAT+GGG | 0.452463 | 8.3:+3693230 | None:intergenic |
| TCTGACAAAGCCATTCTCAT+TGG | 0.453093 | 8.3:-3695207 | MS.gene012350:CDS |
| ACCCAACTAACTCCTGGAAC+TGG | 0.454137 | 8.3:+3694030 | None:intergenic |
| GGCAGATACCGGAGGATTGG+TGG | 0.462672 | 8.3:+3694562 | None:intergenic |
| AATGTACTATATGACATTGA+TGG | 0.462851 | 8.3:-3693874 | MS.gene012350:CDS |
| AAGCCATTATTAGCAATGAC+TGG | 0.469518 | 8.3:-3693397 | MS.gene012350:CDS |
| ATCCCAACCCAACTAACTCC+TGG | 0.481594 | 8.3:+3694024 | None:intergenic |
| CCTGCTCGAGTAGGACGTTA+AGG | 0.481699 | 8.3:+3694588 | None:intergenic |
| AATATACGGTGCAAAGAGAC+TGG | 0.484332 | 8.3:-3693997 | MS.gene012350:CDS |
| GACGTATAAGATTAGGTGTT+CGG | 0.487641 | 8.3:+3695150 | None:intergenic |
| ATGGTGTGTCTCTCCAAGAA+TGG | 0.490659 | 8.3:+3694625 | None:intergenic |
| ATATGACATTGATGGTCAAT+GGG | 0.491161 | 8.3:-3693866 | MS.gene012350:CDS |
| TCCAAGTCCAAGAAAAGAAT+AGG | 0.500631 | 8.3:+3693945 | None:intergenic |
| GAGGGCAGATACCGGAGGAT+TGG | 0.501864 | 8.3:+3694559 | None:intergenic |
| TGGTGTGTCTCTCCAAGAAT+GGG | 0.506010 | 8.3:+3694626 | None:intergenic |
| ATGCAAAAGAAGTCATTTCA+GGG | 0.510894 | 8.3:-3693614 | MS.gene012350:CDS |
| ATTGTTCACCCATTAATACA+TGG | 0.517678 | 8.3:-3693238 | MS.gene012350:CDS |
| TCAGATTCAGAACCGAGTTA+CGG | 0.519174 | 8.3:-3695176 | MS.gene012350:CDS |
| AGGAGTCCAACGTTCCCCTC+TGG | 0.519515 | 8.3:+3693307 | None:intergenic |
| AGCTGAAGTTCATGGCAAAA+GGG | 0.523135 | 8.3:-3694121 | MS.gene012350:CDS |
| CAAGCTGTTCCAAAGTTTCG+CGG | 0.524100 | 8.3:-3694491 | MS.gene012350:intron |
| GTTGCGTGGAGGGCAGATAC+CGG | 0.524211 | 8.3:+3694551 | None:intergenic |
| CAACAATGAGCAGAGTCCAC+TGG | 0.527579 | 8.3:-3694723 | MS.gene012350:CDS |
| AACAAGCGACGTATAAGATT+AGG | 0.528065 | 8.3:+3695143 | None:intergenic |
| TTCTAAAACTCAGAAATCAT+GGG | 0.532310 | 8.3:-3694098 | MS.gene012350:CDS |
| GCAGGTTTCCACCAATCCTC+CGG | 0.534023 | 8.3:-3694570 | MS.gene012350:CDS |
| CCTTAACGTCCTACTCGAGC+AGG | 0.539340 | 8.3:-3694588 | MS.gene012350:CDS |
| CCTTGTCATCTGTTGCGTGG+AGG | 0.541491 | 8.3:+3694540 | None:intergenic |
| TAGGACGTTAAGGTTACCCT+TGG | 0.541780 | 8.3:+3694598 | None:intergenic |
| GGGGATATGATAGGTGCAGC+AGG | 0.547965 | 8.3:+3693212 | None:intergenic |
| TAAGGTTACCCTTGGAAACA+TGG | 0.549476 | 8.3:+3694606 | None:intergenic |
| ACATTGATGGTCAATGGGAT+AGG | 0.553890 | 8.3:-3693861 | MS.gene012350:intron |
| GTGTCTTACAGTAATGAAAG+TGG | 0.561785 | 8.3:-3693272 | MS.gene012350:CDS |
| AGAGACACACCATGTTTCCA+AGG | 0.568528 | 8.3:-3694615 | MS.gene012350:CDS |
| GGAGCAACTCCAAAAGATGT+AGG | 0.569955 | 8.3:+3694656 | None:intergenic |
| CTATTACTAAAGGCAACTGA+AGG | 0.580730 | 8.3:-3695251 | MS.gene012350:intron |
| TTACAGTAATGAAAGTGGGT+TGG | 0.581773 | 8.3:-3693267 | MS.gene012350:CDS |
| CATATGAAATGAATTGTCCT+CGG | 0.582471 | 8.3:-3694071 | MS.gene012350:CDS |
| TACCTCTGCATCCTTGACAA+TGG | 0.586448 | 8.3:+3693581 | None:intergenic |
| ATGAGCAGAGTCCACTGGAA+AGG | 0.592131 | 8.3:-3694718 | MS.gene012350:CDS |
| AAATCACAGCTTCAATGCTA+CGG | 0.596960 | 8.3:-3694794 | MS.gene012350:CDS |
| AAAGCAAAAGAAGCAAAGCA+AGG | 0.598716 | 8.3:-3693371 | MS.gene012350:CDS |
| AAAAGAATAGGATGATTCGT+AGG | 0.600634 | 8.3:+3693957 | None:intergenic |
| TTGTTCACCCATTAATACAT+GGG | 0.606408 | 8.3:-3693237 | MS.gene012350:CDS |
| GGTTCACATCTGTGGTAGCG+TGG | 0.606610 | 8.3:-3694697 | MS.gene012350:CDS |
| ACTGGAAAGGTTCACATCTG+TGG | 0.609418 | 8.3:-3694705 | MS.gene012350:CDS |
| GGTGTTCGGTAACCGTAACT+CGG | 0.609776 | 8.3:+3695164 | None:intergenic |
| GAGACACCAGAGGGGAACGT+TGG | 0.611769 | 8.3:-3693313 | MS.gene012350:CDS |
| TTGAAAGAAAGAGACACCAG+AGG | 0.616272 | 8.3:-3693323 | MS.gene012350:CDS |
| TTTGGGAAATAAAATAGAGG+CGG | 0.617018 | 8.3:+3694815 | None:intergenic |
| TATTACTAAAGGCAACTGAA+GGG | 0.617355 | 8.3:-3695250 | MS.gene012350:intron |
| TCCCATTGTCAAGGATGCAG+AGG | 0.618765 | 8.3:-3693583 | MS.gene012350:intron |
| CCTCCACGCAACAGATGACA+AGG | 0.623006 | 8.3:-3694540 | MS.gene012350:CDS |
| AGCCATTATTAGCAATGACT+GGG | 0.623574 | 8.3:-3693396 | MS.gene012350:CDS |
| ACTGAATCAGCTCTTATTTG+GGG | 0.624865 | 8.3:-3693431 | MS.gene012350:CDS |
| AAAAGAAGCAAAGCAAGGCG+TGG | 0.625738 | 8.3:-3693366 | MS.gene012350:CDS |
| GCTCAAAGCTCCCATTGTCA+AGG | 0.627873 | 8.3:-3693592 | MS.gene012350:CDS |
| TGGTGGAAACCTGCTCGAGT+AGG | 0.629646 | 8.3:+3694579 | None:intergenic |
| AGAAGCAAAGCAAGGCGTGG+AGG | 0.633160 | 8.3:-3693363 | MS.gene012350:CDS |
| TCCAAAAGATGTAGGACGTG+TGG | 0.636254 | 8.3:+3694664 | None:intergenic |
| TGAAAGAAAGAGACACCAGA+GGG | 0.638284 | 8.3:-3693322 | MS.gene012350:CDS |
| ATATAGTACATTGAATGATG+AGG | 0.640551 | 8.3:+3693885 | None:intergenic |
| AAGTTAGTGAGATCTGCTCC+CGG | 0.643787 | 8.3:+3695098 | None:intergenic |
| CGTAGGATAACTCAGCCACA+AGG | 0.646570 | 8.3:+3693974 | None:intergenic |
| TTTCCTTGTCATCTGTTGCG+TGG | 0.647389 | 8.3:+3694537 | None:intergenic |
| AGAATTCTAATTGAGAGCCG+AGG | 0.648326 | 8.3:+3694054 | None:intergenic |
| TCTAAAACTCAGAAATCATG+GGG | 0.654639 | 8.3:-3694097 | MS.gene012350:CDS |
| TTACAGGACTGTTAACGTGA+AGG | 0.654814 | 8.3:-3693670 | MS.gene012350:intron |
| ACGTGAAGGATACAAACAGT+GGG | 0.656469 | 8.3:-3693656 | MS.gene012350:CDS |
| TGTCTTACAGTAATGAAAGT+GGG | 0.672570 | 8.3:-3693271 | MS.gene012350:CDS |
| GCGTGGAGGGCAGATACCGG+AGG | 0.675420 | 8.3:+3694554 | None:intergenic |
| GTGCAAAGAGACTGGCCTTG+TGG | 0.675498 | 8.3:-3693989 | MS.gene012350:CDS |
| GAGACACACCATGTTTCCAA+GGG | 0.680569 | 8.3:-3694614 | MS.gene012350:CDS |
| AACGTGAAGGATACAAACAG+TGG | 0.684966 | 8.3:-3693657 | MS.gene012350:CDS |
| ACAGATGTGAACCTTTCCAG+TGG | 0.686752 | 8.3:+3694707 | None:intergenic |
| GAAAGAAAGAGACACCAGAG+GGG | 0.761071 | 8.3:-3693321 | MS.gene012350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATAATGATATATAATG+AGG | + | chr8.3:3694247-3694266 | None:intergenic | 10.0% |
| !! | AAATTTGATATATGTATTAC+AGG | - | chr8.3:3695001-3695020 | MS.gene012350:intron | 15.0% |
| !! | TATTAGACTCAAATATATAT+TGG | + | chr8.3:3694459-3694478 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAGATGAGAAAC+AGG | + | chr8.3:3693230-3693249 | None:intergenic | 20.0% |
| !! | AAAAAAAAAGATGAGAAACA+GGG | + | chr8.3:3693229-3693248 | None:intergenic | 20.0% |
| !! | AGTTCTTAAAAGAACAATAT+TGG | - | chr8.3:3695147-3695166 | MS.gene012350:CDS | 20.0% |
| !! | TAAAATATACGATGAATTGA+CGG | + | chr8.3:3693744-3693763 | None:intergenic | 20.0% |
| !! | TTCATTACAAAGAAAATGAA+AGG | + | chr8.3:3694888-3694907 | None:intergenic | 20.0% |
| !!! | AGAAAATGAAAGGTATAATA+TGG | + | chr8.3:3694878-3694897 | None:intergenic | 20.0% |
| !!! | AGTAAATTTCAAGTTGTAAA+TGG | - | chr8.3:3694514-3694533 | MS.gene012350:CDS | 20.0% |
| !!! | CATTTTCTTTGTAATGAAAT+CGG | - | chr8.3:3694890-3694909 | MS.gene012350:intron | 20.0% |
| !!! | GTTTTGTTGTTTTAATTAAG+TGG | - | chr8.3:3695175-3695194 | MS.gene012350:CDS | 20.0% |
| !!! | TCTCATCTTTTTTTTTTTCT+TGG | - | chr8.3:3693233-3693252 | MS.gene012350:CDS | 20.0% |
| ! | AATGTACTATATGACATTGA+TGG | - | chr8.3:3694813-3694832 | MS.gene012350:CDS | 25.0% |
| ! | AGGAAAACATTGAAATGATA+TGG | - | chr8.3:3694167-3694186 | MS.gene012350:intron | 25.0% |
| ! | ATATAGTACATTGAATGATG+AGG | + | chr8.3:3694805-3694824 | None:intergenic | 25.0% |
| ! | GACTCAAATATATATTGGAT+AGG | + | chr8.3:3694454-3694473 | None:intergenic | 25.0% |
| ! | TAAGACACCAAAAAATTCTT+AGG | + | chr8.3:3695403-3695422 | None:intergenic | 25.0% |
| ! | TGTAGAAACTAATTTAAGCT+GGG | - | chr8.3:3693391-3693410 | MS.gene012350:CDS | 25.0% |
| ! | TTCTACTCTTTAACCAATTA+CGG | - | chr8.3:3693637-3693656 | MS.gene012350:CDS | 25.0% |
| !! | ACTTGTTTAATGCTCTTTTT+GGG | - | chr8.3:3693323-3693342 | MS.gene012350:CDS | 25.0% |
| !! | CGATAGACTAGATAATTTTT+AGG | + | chr8.3:3693704-3693723 | None:intergenic | 25.0% |
| !! | TACTTGTTTAATGCTCTTTT+TGG | - | chr8.3:3693322-3693341 | MS.gene012350:CDS | 25.0% |
| !!! | AAGTGGCTTGTTAATTTTAT+TGG | - | chr8.3:3695192-3695211 | MS.gene012350:CDS | 25.0% |
| !!! | GATTTTGGGAAATAAAATAG+AGG | + | chr8.3:3693878-3693897 | None:intergenic | 25.0% |
| !!! | GGAATAGTAAGTTGATTAAA+GGG | - | chr8.3:3694766-3694785 | MS.gene012350:CDS | 25.0% |
| !!! | TTCTAAAACTCAGAAATCAT+GGG | - | chr8.3:3694589-3694608 | MS.gene012350:CDS | 25.0% |
| AAAAGAATAGGATGATTCGT+AGG | + | chr8.3:3694733-3694752 | None:intergenic | 30.0% | |
| AAACTGAATCAGCTCTTATT+TGG | - | chr8.3:3695254-3695273 | MS.gene012350:intron | 30.0% | |
| AATGCTTGTACCTAAAGTAA+AGG | + | chr8.3:3694544-3694563 | None:intergenic | 30.0% | |
| AGTTTATGCAAATTGAGTGT+TGG | + | chr8.3:3693360-3693379 | None:intergenic | 30.0% | |
| ATGCAAAAGAAGTCATTTCA+GGG | - | chr8.3:3695073-3695092 | MS.gene012350:intron | 30.0% | |
| ATGCTTGTACCTAAAGTAAA+GGG | + | chr8.3:3694543-3694562 | None:intergenic | 30.0% | |
| ATTGTTCACCCATTAATACA+TGG | - | chr8.3:3695449-3695468 | MS.gene012350:intron | 30.0% | |
| CATATGAAATGAATTGTCCT+CGG | - | chr8.3:3694616-3694635 | MS.gene012350:CDS | 30.0% | |
| CTGTAGAAACTAATTTAAGC+TGG | - | chr8.3:3693390-3693409 | MS.gene012350:CDS | 30.0% | |
| TAAAGAGTAGAAGTGAAAGA+GGG | + | chr8.3:3693629-3693648 | None:intergenic | 30.0% | |
| TATAAAGTAGATATGCCTCA+AGG | + | chr8.3:3694341-3694360 | None:intergenic | 30.0% | |
| TATAATATTGTGCTCACACT+AGG | - | chr8.3:3693762-3693781 | MS.gene012350:intron | 30.0% | |
| TATTACTAAAGGCAACTGAA+GGG | - | chr8.3:3693437-3693456 | MS.gene012350:CDS | 30.0% | |
| TGTCTTACAGTAATGAAAGT+GGG | - | chr8.3:3695416-3695435 | MS.gene012350:intron | 30.0% | |
| TTAAAGAGTAGAAGTGAAAG+AGG | + | chr8.3:3693630-3693649 | None:intergenic | 30.0% | |
| TTGTTCACCCATTAATACAT+GGG | - | chr8.3:3695450-3695469 | MS.gene012350:intron | 30.0% | |
| TTTACTTAAAAATGTGCGAC+CGG | - | chr8.3:3693570-3693589 | MS.gene012350:intron | 30.0% | |
| TTTGGGAAATAAAATAGAGG+CGG | + | chr8.3:3693875-3693894 | None:intergenic | 30.0% | |
| ! | AACTGAATCAGCTCTTATTT+GGG | - | chr8.3:3695255-3695274 | MS.gene012350:intron | 30.0% |
| ! | AAGTACTGTACTACAGTATA+AGG | + | chr8.3:3693307-3693326 | None:intergenic | 30.0% |
| ! | ATATGACATTGATGGTCAAT+GGG | - | chr8.3:3694821-3694840 | MS.gene012350:CDS | 30.0% |
| ! | CAGCTTAAATTAGTTTCTAC+AGG | + | chr8.3:3693392-3693411 | None:intergenic | 30.0% |
| ! | GAATCATCCTATTCTTTTCT+TGG | - | chr8.3:3694735-3694754 | MS.gene012350:CDS | 30.0% |
| ! | TATATGACATTGATGGTCAA+TGG | - | chr8.3:3694820-3694839 | MS.gene012350:CDS | 30.0% |
| ! | TCTAAAACTCAGAAATCATG+GGG | - | chr8.3:3694590-3694609 | MS.gene012350:CDS | 30.0% |
| !! | GGGAATAGTAAGTTGATTAA+AGG | - | chr8.3:3694765-3694784 | MS.gene012350:CDS | 30.0% |
| !! | GTTCTAAAACTCAGAAATCA+TGG | - | chr8.3:3694588-3694607 | MS.gene012350:CDS | 30.0% |
| !!! | TTGGACTCCTAAGAATTTTT+TGG | - | chr8.3:3695393-3695412 | MS.gene012350:intron | 30.0% |
| AAAGCAAAAGAAGCAAAGCA+AGG | - | chr8.3:3695316-3695335 | MS.gene012350:intron | 35.0% | |
| AAATCACAGCTTCAATGCTA+CGG | - | chr8.3:3693893-3693912 | MS.gene012350:CDS | 35.0% | |
| AAATGGTGTCCCTTTACTTT+AGG | - | chr8.3:3694531-3694550 | MS.gene012350:CDS | 35.0% | |
| AACAAGCGACGTATAAGATT+AGG | + | chr8.3:3693547-3693566 | None:intergenic | 35.0% | |
| AAGCCATTATTAGCAATGAC+TGG | - | chr8.3:3695290-3695309 | MS.gene012350:intron | 35.0% | |
| ACTAGCTAATCATTCACTAG+CGG | - | chr8.3:3694933-3694952 | MS.gene012350:intron | 35.0% | |
| AGCCATTATTAGCAATGACT+GGG | - | chr8.3:3695291-3695310 | MS.gene012350:intron | 35.0% | |
| ATTAGAATTCTTCCAGTTCC+AGG | - | chr8.3:3694645-3694664 | MS.gene012350:CDS | 35.0% | |
| CATTAAAAACATTCGCCTTG+AGG | - | chr8.3:3694323-3694342 | MS.gene012350:intron | 35.0% | |
| CTATTACTAAAGGCAACTGA+AGG | - | chr8.3:3693436-3693455 | MS.gene012350:CDS | 35.0% | |
| GACGTATAAGATTAGGTGTT+CGG | + | chr8.3:3693540-3693559 | None:intergenic | 35.0% | |
| GATGCAAAAGAAGTCATTTC+AGG | - | chr8.3:3695072-3695091 | MS.gene012350:intron | 35.0% | |
| GATTCAACTTCCAATGAGAA+TGG | + | chr8.3:3693493-3693512 | None:intergenic | 35.0% | |
| GGGTTGGGATTGTTAATATA+CGG | - | chr8.3:3694676-3694695 | MS.gene012350:CDS | 35.0% | |
| GTCAATTTCATATACGCTGA+CGG | - | chr8.3:3694269-3694288 | MS.gene012350:intron | 35.0% | |
| GTGTCTTACAGTAATGAAAG+TGG | - | chr8.3:3695415-3695434 | MS.gene012350:intron | 35.0% | |
| TCCAAGTCCAAGAAAAGAAT+AGG | + | chr8.3:3694745-3694764 | None:intergenic | 35.0% | |
| TCTCCAAGAATGGGATTATA+AGG | + | chr8.3:3694055-3694074 | None:intergenic | 35.0% | |
| TGAGATTCTGTTGTTGATCA+GGG | - | chr8.3:3695223-3695242 | MS.gene012350:CDS | 35.0% | |
| TGGAAATTAACAAGTGACCT+TGG | - | chr8.3:3693829-3693848 | MS.gene012350:intron | 35.0% | |
| TTACAGTAATGAAAGTGGGT+TGG | - | chr8.3:3695420-3695439 | MS.gene012350:intron | 35.0% | |
| TTACTTAAAAATGTGCGACC+GGG | - | chr8.3:3693571-3693590 | MS.gene012350:intron | 35.0% | |
| TTTAGGCATAAAGCACAGAT+TGG | + | chr8.3:3693687-3693706 | None:intergenic | 35.0% | |
| ! | ACCGTTCTTTATGCTTCTTT+TGG | - | chr8.3:3693263-3693282 | MS.gene012350:CDS | 35.0% |
| ! | ACTGAATCAGCTCTTATTTG+GGG | - | chr8.3:3695256-3695275 | MS.gene012350:intron | 35.0% |
| ! | AGAAGCATAAAGAACGGTAT+TGG | + | chr8.3:3693261-3693280 | None:intergenic | 35.0% |
| ! | ATTCTTTTCTTGGACTTGGA+GGG | - | chr8.3:3694745-3694764 | MS.gene012350:CDS | 35.0% |
| ! | CCCAAAAGAAGCATAAAGAA+CGG | + | chr8.3:3693267-3693286 | None:intergenic | 35.0% |
| ! | CCGTTCTTTATGCTTCTTTT+GGG | - | chr8.3:3693264-3693283 | MS.gene012350:CDS | 35.0% |
| ! | GAAAGGTATAATATGGTGTG+AGG | + | chr8.3:3694871-3694890 | None:intergenic | 35.0% |
| ! | GGCTTTGTCAGAACAATTAT+GGG | + | chr8.3:3693472-3693491 | None:intergenic | 35.0% |
| ! | TATTCTTTTCTTGGACTTGG+AGG | - | chr8.3:3694744-3694763 | MS.gene012350:CDS | 35.0% |
| ! | TCCTATTCTTTTCTTGGACT+TGG | - | chr8.3:3694741-3694760 | MS.gene012350:CDS | 35.0% |
| !! | AGCATTGAAGCTGTGATTTT+GGG | + | chr8.3:3693892-3693911 | None:intergenic | 35.0% |
| !! | TAGCATTGAAGCTGTGATTT+TGG | + | chr8.3:3693893-3693912 | None:intergenic | 35.0% |
| !! | TGGCTTTGTCAGAACAATTA+TGG | + | chr8.3:3693473-3693492 | None:intergenic | 35.0% |
| AAAAGATGAGAAACAGGGAG+AGG | + | chr8.3:3693224-3693243 | None:intergenic | 40.0% | |
| AACGTGAAGGATACAAACAG+TGG | - | chr8.3:3695030-3695049 | MS.gene012350:intron | 40.0% | |
| AAGCTGAAGTTCATGGCAAA+AGG | - | chr8.3:3694565-3694584 | MS.gene012350:CDS | 40.0% | |
| AATATACGGTGCAAAGAGAC+TGG | - | chr8.3:3694690-3694709 | MS.gene012350:CDS | 40.0% | |
| AATATGGTGTGAGGTGATGA+GGG | + | chr8.3:3694862-3694881 | None:intergenic | 40.0% | |
| ACGTGAAGGATACAAACAGT+GGG | - | chr8.3:3695031-3695050 | MS.gene012350:intron | 40.0% | |
| AGAATTCTAATTGAGAGCCG+AGG | + | chr8.3:3694636-3694655 | None:intergenic | 40.0% | |
| AGCAGATCTCACTAACTTAC+AGG | - | chr8.3:3693594-3693613 | MS.gene012350:CDS | 40.0% | |
| AGCAGGTACCCATGTATTAA+TGG | + | chr8.3:3695461-3695480 | None:intergenic | 40.0% | |
| AGCTGAAGTTCATGGCAAAA+GGG | - | chr8.3:3694566-3694585 | MS.gene012350:CDS | 40.0% | |
| CAATGCGTGTATTAGACAGA+CGG | + | chr8.3:3693811-3693830 | None:intergenic | 40.0% | |
| CTCCCAGTCATTGCTAATAA+TGG | + | chr8.3:3695296-3695315 | None:intergenic | 40.0% | |
| CTGAGATTCTGTTGTTGATC+AGG | - | chr8.3:3695222-3695241 | MS.gene012350:CDS | 40.0% | |
| GAGTTTCAACCAAATCACAG+TGG | + | chr8.3:3693665-3693684 | None:intergenic | 40.0% | |
| GCAGGTACCCATGTATTAAT+GGG | + | chr8.3:3695460-3695479 | None:intergenic | 40.0% | |
| GCGGGCTTAACTATTACTAA+AGG | - | chr8.3:3693426-3693445 | MS.gene012350:CDS | 40.0% | |
| GCTCCTTATAATCCCATTCT+TGG | - | chr8.3:3694049-3694068 | MS.gene012350:CDS | 40.0% | |
| TAAGGTTACCCTTGGAAACA+TGG | + | chr8.3:3694084-3694103 | None:intergenic | 40.0% | |
| TAATATGGTGTGAGGTGATG+AGG | + | chr8.3:3694863-3694882 | None:intergenic | 40.0% | |
| TATTGTGCTCACACTAGGAT+AGG | - | chr8.3:3693767-3693786 | MS.gene012350:intron | 40.0% | |
| TCAGATTCAGAACCGAGTTA+CGG | - | chr8.3:3693511-3693530 | MS.gene012350:intron | 40.0% | |
| TCTGACAAAGCCATTCTCAT+TGG | - | chr8.3:3693480-3693499 | MS.gene012350:intron | 40.0% | |
| TGAAAGAAAGAGACACCAGA+GGG | - | chr8.3:3695365-3695384 | MS.gene012350:intron | 40.0% | |
| TTACAGGACTGTTAACGTGA+AGG | - | chr8.3:3695017-3695036 | MS.gene012350:intron | 40.0% | |
| TTGAAAGAAAGAGACACCAG+AGG | - | chr8.3:3695364-3695383 | MS.gene012350:intron | 40.0% | |
| ! | ACATTGATGGTCAATGGGAT+AGG | - | chr8.3:3694826-3694845 | MS.gene012350:intron | 40.0% |
| ! | AGCATTGAAGCTGAAGTTCA+TGG | - | chr8.3:3694558-3694577 | MS.gene012350:CDS | 40.0% |
| ! | TTAAGCTGGGTGTTACATTG+TGG | - | chr8.3:3693404-3693423 | MS.gene012350:CDS | 40.0% |
| ! | TTTGAGATACCGCGAAACTT+TGG | + | chr8.3:3694208-3694227 | None:intergenic | 40.0% |
| AAAAGAAGCAAAGCAAGGCG+TGG | - | chr8.3:3695321-3695340 | MS.gene012350:intron | 45.0% | |
| AAGTTAGTGAGATCTGCTCC+CGG | + | chr8.3:3693592-3693611 | None:intergenic | 45.0% | |
| AATCACAGTGGCACCGTAAT+TGG | + | chr8.3:3693653-3693672 | None:intergenic | 45.0% | |
| ACAGATGTGAACCTTTCCAG+TGG | + | chr8.3:3693983-3694002 | None:intergenic | 45.0% | |
| ACCTCTGCATCCTTGACAAT+GGG | + | chr8.3:3695108-3695127 | None:intergenic | 45.0% | |
| ACTGGAAAGGTTCACATCTG+TGG | - | chr8.3:3693982-3694001 | MS.gene012350:CDS | 45.0% | |
| AGAGACACACCATGTTTCCA+AGG | - | chr8.3:3694072-3694091 | MS.gene012350:CDS | 45.0% | |
| ATGGTGTGTCTCTCCAAGAA+TGG | + | chr8.3:3694065-3694084 | None:intergenic | 45.0% | |
| CAAGCTGTTCCAAAGTTTCG+CGG | - | chr8.3:3694196-3694215 | MS.gene012350:intron | 45.0% | |
| CGTCTGTCTAATACACGCAT+TGG | - | chr8.3:3693809-3693828 | MS.gene012350:intron | 45.0% | |
| GAAAGAAAGAGACACCAGAG+GGG | - | chr8.3:3695366-3695385 | MS.gene012350:intron | 45.0% | |
| GAGACACACCATGTTTCCAA+GGG | - | chr8.3:3694073-3694092 | MS.gene012350:CDS | 45.0% | |
| GGAGCAACTCCAAAAGATGT+AGG | + | chr8.3:3694034-3694053 | None:intergenic | 45.0% | |
| GGATGCAGAGGTAACTAACA+AGG | - | chr8.3:3695116-3695135 | MS.gene012350:CDS | 45.0% | |
| TACCTCTGCATCCTTGACAA+TGG | + | chr8.3:3695109-3695128 | None:intergenic | 45.0% | |
| TAGGACGTTAAGGTTACCCT+TGG | + | chr8.3:3694092-3694111 | None:intergenic | 45.0% | |
| TCCAAAAGATGTAGGACGTG+TGG | + | chr8.3:3694026-3694045 | None:intergenic | 45.0% | |
| TCCAGTTCCAGGAGTTAGTT+GGG | - | chr8.3:3694656-3694675 | MS.gene012350:CDS | 45.0% | |
| TGGTGTGTCTCTCCAAGAAT+GGG | + | chr8.3:3694064-3694083 | None:intergenic | 45.0% | |
| TTCCAGGAGTTAGTTGGGTT+GGG | - | chr8.3:3694661-3694680 | MS.gene012350:CDS | 45.0% | |
| TTCCAGTTCCAGGAGTTAGT+TGG | - | chr8.3:3694655-3694674 | MS.gene012350:CDS | 45.0% | |
| TTTCCTTGTCATCTGTTGCG+TGG | + | chr8.3:3694153-3694172 | None:intergenic | 45.0% | |
| ! | ACCACACGTCCTACATCTTT+TGG | - | chr8.3:3694022-3694041 | MS.gene012350:CDS | 45.0% |
| ! | CTGTTGTTGATCAGGGTGTT+TGG | - | chr8.3:3695230-3695249 | MS.gene012350:CDS | 45.0% |
| !! | ATTACGGTGCCACTGTGATT+TGG | - | chr8.3:3693653-3693672 | MS.gene012350:CDS | 45.0% |
| !! | GAAACTTTGGAACAGCTTGC+TGG | + | chr8.3:3694195-3694214 | None:intergenic | 45.0% |
| ACCCAACTAACTCCTGGAAC+TGG | + | chr8.3:3694660-3694679 | None:intergenic | 50.0% | |
| ATCCCAACCCAACTAACTCC+TGG | + | chr8.3:3694666-3694685 | None:intergenic | 50.0% | |
| ATGAGCAGAGTCCACTGGAA+AGG | - | chr8.3:3693969-3693988 | MS.gene012350:CDS | 50.0% | |
| CAACAATGAGCAGAGTCCAC+TGG | - | chr8.3:3693964-3693983 | MS.gene012350:CDS | 50.0% | |
| CGTAGGATAACTCAGCCACA+AGG | + | chr8.3:3694716-3694735 | None:intergenic | 50.0% | |
| CTGCACACGAATACAAGCCA+AGG | + | chr8.3:3693849-3693868 | None:intergenic | 50.0% | |
| CTTGTCATCTGTTGCGTGGA+GGG | + | chr8.3:3694149-3694168 | None:intergenic | 50.0% | |
| GATGAGAAACAGGGAGAGGA+CGG | + | chr8.3:3693220-3693239 | None:intergenic | 50.0% | |
| GCTCAAAGCTCCCATTGTCA+AGG | - | chr8.3:3695095-3695114 | MS.gene012350:CDS | 50.0% | |
| GGTGTTCGGTAACCGTAACT+CGG | + | chr8.3:3693526-3693545 | None:intergenic | 50.0% | |
| GTTCCAGGAGTTAGTTGGGT+TGG | - | chr8.3:3694660-3694679 | MS.gene012350:CDS | 50.0% | |
| TCCCATTGTCAAGGATGCAG+AGG | - | chr8.3:3695104-3695123 | MS.gene012350:CDS | 50.0% | |
| ! | AGCTGGGTGTTACATTGTGG+CGG | - | chr8.3:3693407-3693426 | MS.gene012350:CDS | 50.0% |
| AGAAGCAAAGCAAGGCGTGG+AGG | - | chr8.3:3695324-3695343 | MS.gene012350:intron | 55.0% | |
| CCTCCACGCAACAGATGACA+AGG | - | chr8.3:3694147-3694166 | MS.gene012350:intron | 55.0% | |
| CCTGCTCGAGTAGGACGTTA+AGG | + | chr8.3:3694102-3694121 | None:intergenic | 55.0% | |
| CCTTAACGTCCTACTCGAGC+AGG | - | chr8.3:3694099-3694118 | MS.gene012350:CDS | 55.0% | |
| CCTTGTCATCTGTTGCGTGG+AGG | + | chr8.3:3694150-3694169 | None:intergenic | 55.0% | |
| GCAGGTTTCCACCAATCCTC+CGG | - | chr8.3:3694117-3694136 | MS.gene012350:CDS | 55.0% | |
| GGGGATATGATAGGTGCAGC+AGG | + | chr8.3:3695478-3695497 | None:intergenic | 55.0% | |
| TGGTGGAAACCTGCTCGAGT+AGG | + | chr8.3:3694111-3694130 | None:intergenic | 55.0% | |
| ! | GCTGGGTGTTACATTGTGGC+GGG | - | chr8.3:3693408-3693427 | MS.gene012350:CDS | 55.0% |
| ! | GGTTCACATCTGTGGTAGCG+TGG | - | chr8.3:3693990-3694009 | MS.gene012350:CDS | 55.0% |
| !! | GTGCAAAGAGACTGGCCTTG+TGG | - | chr8.3:3694698-3694717 | MS.gene012350:CDS | 55.0% |
| AGGAGTCCAACGTTCCCCTC+TGG | + | chr8.3:3695383-3695402 | None:intergenic | 60.0% | |
| GAGACACCAGAGGGGAACGT+TGG | - | chr8.3:3695374-3695393 | MS.gene012350:intron | 60.0% | |
| GAGGGCAGATACCGGAGGAT+TGG | + | chr8.3:3694131-3694150 | None:intergenic | 60.0% | |
| GGCAGATACCGGAGGATTGG+TGG | + | chr8.3:3694128-3694147 | None:intergenic | 60.0% | |
| GTTGCGTGGAGGGCAGATAC+CGG | + | chr8.3:3694139-3694158 | None:intergenic | 60.0% | |
| GCGTGGAGGGCAGATACCGG+AGG | + | chr8.3:3694136-3694155 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 3693208 | 3695501 | 3693208 | ID=MS.gene012350 |
| chr8.3 | mRNA | 3693208 | 3695501 | 3693208 | ID=MS.gene012350.t1;Parent=MS.gene012350 |
| chr8.3 | exon | 3695499 | 3695501 | 3695499 | ID=MS.gene012350.t1.exon1;Parent=MS.gene012350.t1 |
| chr8.3 | CDS | 3695499 | 3695501 | 3695499 | ID=cds.MS.gene012350.t1;Parent=MS.gene012350.t1 |
| chr8.3 | exon | 3695094 | 3695261 | 3695094 | ID=MS.gene012350.t1.exon2;Parent=MS.gene012350.t1 |
| chr8.3 | CDS | 3695094 | 3695261 | 3695094 | ID=cds.MS.gene012350.t1;Parent=MS.gene012350.t1 |
| chr8.3 | exon | 3694492 | 3694840 | 3694492 | ID=MS.gene012350.t1.exon3;Parent=MS.gene012350.t1 |
| chr8.3 | CDS | 3694492 | 3694840 | 3694492 | ID=cds.MS.gene012350.t1;Parent=MS.gene012350.t1 |
| chr8.3 | exon | 3693862 | 3694156 | 3693862 | ID=MS.gene012350.t1.exon4;Parent=MS.gene012350.t1 |
| chr8.3 | CDS | 3693862 | 3694156 | 3693862 | ID=cds.MS.gene012350.t1;Parent=MS.gene012350.t1 |
| chr8.3 | exon | 3693584 | 3693686 | 3693584 | ID=MS.gene012350.t1.exon5;Parent=MS.gene012350.t1 |
| chr8.3 | CDS | 3693584 | 3693686 | 3693584 | ID=cds.MS.gene012350.t1;Parent=MS.gene012350.t1 |
| chr8.3 | exon | 3693208 | 3693465 | 3693208 | ID=MS.gene012350.t1.exon6;Parent=MS.gene012350.t1 |
| chr8.3 | CDS | 3693208 | 3693465 | 3693208 | ID=cds.MS.gene012350.t1;Parent=MS.gene012350.t1 |
| Gene Sequence |
| Protein sequence |
