Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012351.t1 | RHN64698.1 | 94.5 | 325 | 18 | 0 | 1 | 325 | 14 | 338 | 7.80E-184 | 652.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012351.t1 | Q9LVD4 | 51.2 | 324 | 154 | 4 | 1 | 322 | 54 | 375 | 9.9e-95 | 348.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012351.t1 | G7JUB4 | 94.5 | 325 | 18 | 0 | 1 | 325 | 58 | 382 | 5.6e-184 | 652.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99026 | MS.gene012351 | PPI |
| MS.gene012351 | MS.gene49595 | PPI |
| MS.gene032779 | MS.gene012351 | PPI |
| MS.gene066288 | MS.gene012351 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012351.t1 | MTR_4g127510 | 94.462 | 325 | 18 | 0 | 1 | 325 | 58 | 382 | 0.0 | 641 |
| MS.gene012351.t1 | MTR_2g037770 | 70.462 | 325 | 94 | 2 | 1 | 325 | 60 | 382 | 1.50e-167 | 471 |
| MS.gene012351.t1 | MTR_2g037790 | 65.337 | 326 | 110 | 3 | 1 | 325 | 64 | 387 | 3.31e-155 | 440 |
| MS.gene012351.t1 | MTR_2g037790 | 65.337 | 326 | 110 | 3 | 1 | 325 | 61 | 384 | 4.82e-155 | 439 |
| MS.gene012351.t1 | MTR_4g127490 | 64.832 | 327 | 108 | 5 | 1 | 322 | 69 | 393 | 4.36e-149 | 425 |
| MS.gene012351.t1 | MTR_4g127490 | 64.832 | 327 | 108 | 5 | 1 | 322 | 67 | 391 | 4.64e-149 | 425 |
| MS.gene012351.t1 | MTR_2g037770 | 70.248 | 242 | 70 | 2 | 1 | 242 | 61 | 300 | 7.39e-120 | 348 |
| MS.gene012351.t1 | MTR_2g037770 | 70.248 | 242 | 70 | 2 | 1 | 242 | 60 | 299 | 8.41e-120 | 348 |
| MS.gene012351.t1 | MTR_2g037770 | 69.524 | 210 | 63 | 1 | 1 | 210 | 60 | 268 | 2.37e-103 | 304 |
| MS.gene012351.t1 | MTR_4g064110 | 26.300 | 327 | 196 | 12 | 2 | 301 | 95 | 403 | 2.49e-18 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012351.t1 | AT5G57240 | 51.235 | 324 | 154 | 4 | 1 | 322 | 54 | 375 | 8.94e-116 | 340 |
| MS.gene012351.t1 | AT5G57240 | 51.235 | 324 | 154 | 4 | 1 | 322 | 54 | 375 | 8.94e-116 | 340 |
| MS.gene012351.t1 | AT5G57240 | 51.235 | 324 | 154 | 4 | 1 | 322 | 54 | 375 | 8.94e-116 | 340 |
| MS.gene012351.t1 | AT4G25850 | 52.308 | 325 | 151 | 4 | 1 | 323 | 59 | 381 | 1.35e-113 | 334 |
| MS.gene012351.t1 | AT4G25850 | 52.308 | 325 | 151 | 4 | 1 | 323 | 161 | 483 | 6.53e-112 | 333 |
| MS.gene012351.t1 | AT5G57240 | 47.564 | 349 | 154 | 5 | 1 | 322 | 54 | 400 | 5.57e-110 | 326 |
| MS.gene012351.t1 | AT5G57240 | 47.564 | 349 | 154 | 5 | 1 | 322 | 54 | 400 | 5.57e-110 | 326 |
| MS.gene012351.t1 | AT4G25860 | 50.462 | 325 | 157 | 4 | 1 | 323 | 60 | 382 | 5.55e-109 | 323 |
| MS.gene012351.t1 | AT4G25860 | 50.462 | 325 | 157 | 4 | 1 | 323 | 54 | 376 | 6.01e-109 | 322 |
| MS.gene012351.t1 | AT4G25850 | 54.327 | 208 | 93 | 2 | 1 | 206 | 59 | 266 | 1.11e-71 | 223 |
| MS.gene012351.t1 | AT3G09300 | 26.606 | 327 | 195 | 12 | 2 | 301 | 99 | 407 | 2.21e-18 | 85.9 |
| MS.gene012351.t1 | AT5G02100 | 25.382 | 327 | 199 | 12 | 2 | 301 | 67 | 375 | 1.54e-16 | 80.5 |
| MS.gene012351.t1 | AT5G02100 | 25.382 | 327 | 199 | 12 | 2 | 301 | 94 | 402 | 2.11e-16 | 80.1 |
| MS.gene012351.t1 | AT5G59420 | 25.672 | 335 | 190 | 13 | 2 | 302 | 94 | 403 | 2.66e-15 | 76.6 |
| MS.gene012351.t1 | AT5G02100 | 27.386 | 241 | 148 | 10 | 2 | 231 | 94 | 318 | 4.89e-14 | 72.0 |
Find 94 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACAATCTTTCTTTGGATT+TGG | 0.214403 | 8.3:-3685134 | MS.gene012351:CDS |
| GATGCAAAAGAAGTTCTTTC+AGG | 0.216977 | 8.3:-3684827 | MS.gene012351:CDS |
| AGAAATCTGAATAAGAAATT+TGG | 0.242852 | 8.3:+3685239 | None:intergenic |
| GAAAATCGAAGACGCATAAA+AGG | 0.247755 | 8.3:-3685107 | MS.gene012351:CDS |
| CTGCCACCAGGCCTGTTTCT+AGG | 0.260032 | 8.3:+3685171 | None:intergenic |
| TTCCAATTCCTGGTATTGAT+TGG | 0.273123 | 8.3:-3685217 | MS.gene012351:CDS |
| GACAATCTTTCTTTGGATTT+GGG | 0.281255 | 8.3:-3685133 | MS.gene012351:CDS |
| TACATTAGACAATCTTTCTT+TGG | 0.291802 | 8.3:-3685140 | MS.gene012351:CDS |
| CAACAGAATCAGCTCTTGTT+TGG | 0.292875 | 8.3:-3684630 | MS.gene012351:CDS |
| TTCAGATTTCTTCCAATTCC+TGG | 0.299189 | 8.3:-3685227 | MS.gene012351:CDS |
| AATGTTCTTTATAAAGTTGA+TGG | 0.305358 | 8.3:-3685059 | MS.gene012351:CDS |
| AACAGAATCAGCTCTTGTTT+GGG | 0.307712 | 8.3:-3684629 | MS.gene012351:CDS |
| ACTACACGACCACAAAGTTT+TGG | 0.313131 | 8.3:-3687309 | MS.gene012351:CDS |
| CCTGTTCAAGCAAGATATTA+AGG | 0.331166 | 8.3:+3687232 | None:intergenic |
| AGGGTGGCAATAGGGGCATT+TGG | 0.339692 | 8.3:+3684415 | None:intergenic |
| AATAATTATAGGGTGGCAAT+AGG | 0.343917 | 8.3:+3684406 | None:intergenic |
| TCCAATTCCTGGTATTGATT+GGG | 0.344320 | 8.3:-3685216 | MS.gene012351:CDS |
| CAAGATATTAAGGTTTCCTT+TGG | 0.344554 | 8.3:+3687242 | None:intergenic |
| GATCCTTAACAAAAGGAGTA+TGG | 0.365025 | 8.3:+3684801 | None:intergenic |
| CATCCACATAAATAATTATA+GGG | 0.369840 | 8.3:+3684396 | None:intergenic |
| ACCATTGGATAGATTTATAT+CGG | 0.370049 | 8.3:-3687352 | MS.gene012351:CDS |
| AAGCAATCATAAGCAACAAT+TGG | 0.370621 | 8.3:-3684594 | MS.gene012351:CDS |
| AATTGTTGCTTATGATTGCT+TGG | 0.374240 | 8.3:+3684596 | None:intergenic |
| GGGTGGCAATAGGGGCATTT+GGG | 0.383257 | 8.3:+3684416 | None:intergenic |
| TTTATAAAGTTGATGGTCAC+TGG | 0.383419 | 8.3:-3685052 | MS.gene012351:CDS |
| ACCCAATCAATACCAGGAAT+TGG | 0.388589 | 8.3:+3685215 | None:intergenic |
| ATAATTATAGGGTGGCAATA+GGG | 0.390685 | 8.3:+3684407 | None:intergenic |
| TTAGTCACTATGAAGTGTTT+AGG | 0.390721 | 8.3:+3684484 | None:intergenic |
| CCTTAATATCTTGCTTGAAC+AGG | 0.396457 | 8.3:-3687232 | MS.gene012351:intron |
| CTTCTGATCAGTGGCATGTA+AGG | 0.421033 | 8.3:+3685559 | None:intergenic |
| ACTATCCGGTGCCTAGAAAC+AGG | 0.426852 | 8.3:-3685182 | MS.gene012351:CDS |
| AGCAATCATAAGCAACAATT+GGG | 0.430292 | 8.3:-3684593 | MS.gene012351:CDS |
| CAGCTAATAATGCAGAAGTA+AGG | 0.433495 | 8.3:-3684859 | MS.gene012351:CDS |
| ATGATGAGTTTCAGCAAGAA+TGG | 0.436394 | 8.3:+3687269 | None:intergenic |
| AGCTGCATCCTTCAATGTTA+CGG | 0.442705 | 8.3:+3684877 | None:intergenic |
| TCTCCACTGCCAAAGTTTGT+TGG | 0.444382 | 8.3:-3685509 | MS.gene012351:intron |
| TACCATTGAAGCTGTGATCT+AGG | 0.452326 | 8.3:+3687435 | None:intergenic |
| GAGAGTCAAAAGGAGAAACT+TGG | 0.458259 | 8.3:-3684510 | MS.gene012351:CDS |
| ATGCAAAAGAAGTTCTTTCA+GGG | 0.464921 | 8.3:-3684826 | MS.gene012351:CDS |
| ACCTCTGGATCCTTAACAAA+AGG | 0.474417 | 8.3:+3684794 | None:intergenic |
| TTCAGCAAGAATGGGATTGT+AGG | 0.474989 | 8.3:+3687278 | None:intergenic |
| AAGTTGATGGTCACTGGGAC+AGG | 0.477793 | 8.3:-3685046 | MS.gene012351:intron |
| GCAGGTTTCACACCATCCTC+AGG | 0.478451 | 8.3:-3685588 | MS.gene012351:intron |
| TTGCAGCACCGTAACATTGA+AGG | 0.485137 | 8.3:-3684885 | MS.gene012351:intron |
| TGATGAGTTTCAGCAAGAAT+GGG | 0.485345 | 8.3:+3687270 | None:intergenic |
| ATCTTTCTTTGGATTTGGGT+CGG | 0.489778 | 8.3:-3685129 | MS.gene012351:CDS |
| CTTAGAGAAAGAGAGTCAAA+AGG | 0.495468 | 8.3:-3684520 | MS.gene012351:CDS |
| CTAATAGCAAAGAAGATGGC+TGG | 0.497615 | 8.3:-3684465 | MS.gene012351:CDS |
| AAAATCGAAGACGCATAAAA+GGG | 0.501498 | 8.3:-3685106 | MS.gene012351:CDS |
| TATGTTTCCCTTCTGATCAG+TGG | 0.503129 | 8.3:+3685550 | None:intergenic |
| AAACTGCATCTCCACAATCA+TGG | 0.507914 | 8.3:-3685284 | MS.gene012351:CDS |
| GTTTGTTTACCAACAAACTT+TGG | 0.511367 | 8.3:+3685500 | None:intergenic |
| TCAGCAAGAATGGGATTGTA+GGG | 0.515658 | 8.3:+3687279 | None:intergenic |
| CAACAATGGGAAAACACCAT+TGG | 0.516688 | 8.3:-3687367 | MS.gene012351:CDS |
| GATTTATATCGGTAGTTGCA+TGG | 0.516808 | 8.3:-3687341 | MS.gene012351:CDS |
| TGATAAATAGCATCAACAAT+GGG | 0.517605 | 8.3:-3687380 | MS.gene012351:CDS |
| GGAACAACTCCAAAACTTTG+TGG | 0.523014 | 8.3:+3687300 | None:intergenic |
| TGCCTAGATCACAGCTTCAA+TGG | 0.526396 | 8.3:-3687437 | MS.gene012351:CDS |
| TAATTATAGGGTGGCAATAG+GGG | 0.530263 | 8.3:+3684408 | None:intergenic |
| AGATCACAGCTTCAATGGTA+TGG | 0.534057 | 8.3:-3687432 | MS.gene012351:CDS |
| GGGTTGGCAATGTCACTATC+CGG | 0.534777 | 8.3:-3685196 | MS.gene012351:CDS |
| ACTGTTCACCAATTCAAAAG+TGG | 0.544922 | 8.3:-3684441 | MS.gene012351:CDS |
| TTACCAACAAACTTTGGCAG+TGG | 0.549257 | 8.3:+3685506 | None:intergenic |
| CATATGTCTCTCCATGATTG+TGG | 0.550271 | 8.3:+3685273 | None:intergenic |
| ATTCCTGGTATTGATTGGGT+TGG | 0.551107 | 8.3:-3685212 | MS.gene012351:CDS |
| CCAGGCCTGTTTCTAGGCAC+CGG | 0.553914 | 8.3:+3685177 | None:intergenic |
| TTATAAAGTTGATGGTCACT+GGG | 0.556534 | 8.3:-3685051 | MS.gene012351:CDS |
| CTTACATGCCACTGATCAGA+AGG | 0.558760 | 8.3:-3685558 | MS.gene012351:CDS |
| GTGACTAATAGCAAAGAAGA+TGG | 0.559067 | 8.3:-3684469 | MS.gene012351:CDS |
| AGCTAATAATGCAGAAGTAA+GGG | 0.564631 | 8.3:-3684858 | MS.gene012351:CDS |
| AGAGTCAAAAGGAGAAACTT+GGG | 0.577131 | 8.3:-3684509 | MS.gene012351:CDS |
| TTGATAAATAGCATCAACAA+TGG | 0.581542 | 8.3:-3687381 | MS.gene012351:CDS |
| GGTGAATGTGTATATTCCAC+AGG | 0.587207 | 8.3:-3687411 | MS.gene012351:CDS |
| GAAACTCATCATGTCTCCAA+AGG | 0.590812 | 8.3:-3687258 | MS.gene012351:CDS |
| CAAACTTTGGCAGTGGAGAG+TGG | 0.591312 | 8.3:+3685513 | None:intergenic |
| ACCGATATAAATCTATCCAA+TGG | 0.599610 | 8.3:+3687351 | None:intergenic |
| TGTAGCTCAATTCTGCCACC+AGG | 0.601790 | 8.3:+3685159 | None:intergenic |
| CAATTGGGGAAAAGCAAGAG+AGG | 0.602952 | 8.3:-3684578 | MS.gene012351:CDS |
| CCGGTGCCTAGAAACAGGCC+TGG | 0.605855 | 8.3:-3685177 | MS.gene012351:CDS |
| ACAGAATCAGCTCTTGTTTG+GGG | 0.607067 | 8.3:-3684628 | MS.gene012351:CDS |
| CAAACAAGAGCTGATTCTGT+TGG | 0.613139 | 8.3:+3684631 | None:intergenic |
| CTGTTCACCAATTCAAAAGT+GGG | 0.616115 | 8.3:-3684440 | MS.gene012351:CDS |
| GGAGTAGAAGTTGACATGCA+TGG | 0.620677 | 8.3:-3685314 | MS.gene012351:CDS |
| ATTTATCAAGTCTACACCTG+TGG | 0.632528 | 8.3:+3687395 | None:intergenic |
| TTGCCAACCCAATCAATACC+AGG | 0.642684 | 8.3:+3685209 | None:intergenic |
| CCACATAAATAATTATAGGG+TGG | 0.649669 | 8.3:+3684399 | None:intergenic |
| GTGCCTAGAAACAGGCCTGG+TGG | 0.653867 | 8.3:-3685174 | MS.gene012351:CDS |
| GTAAGGCAGATACCTGAGGA+TGG | 0.662691 | 8.3:+3685576 | None:intergenic |
| GCAATCATAAGCAACAATTG+GGG | 0.664322 | 8.3:-3684592 | MS.gene012351:CDS |
| AGAGGCAAAGAACACTGTGG+AGG | 0.678761 | 8.3:-3684560 | MS.gene012351:CDS |
| TTACATGCCACTGATCAGAA+GGG | 0.681910 | 8.3:-3685557 | MS.gene012351:CDS |
| GCATGTAAGGCAGATACCTG+AGG | 0.700701 | 8.3:+3685572 | None:intergenic |
| ACACTGTGGAGGAAACTCAG+AGG | 0.752482 | 8.3:-3684549 | MS.gene012351:CDS |
| AAGAGAGGCAAAGAACACTG+TGG | 0.782455 | 8.3:-3684563 | MS.gene012351:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAACACTTAATTATTTAT+TGG | - | chr8.3:3685020-3685039 | MS.gene012351:intron | 10.0% |
| !! | AAATAATAGAGAGAAAAAAA+AGG | + | chr8.3:3685798-3685817 | None:intergenic | 15.0% |
| !! | AATTAAGCAAAATAAGTAAA+AGG | + | chr8.3:3686851-3686870 | None:intergenic | 15.0% |
| !! | ATAAATATTCCTAGATAATT+TGG | - | chr8.3:3685232-3685251 | MS.gene012351:CDS | 15.0% |
| !! | CTATTATTTAGATAATTAGA+TGG | - | chr8.3:3686904-3686923 | MS.gene012351:intron | 15.0% |
| !! | GTCAAAAAATTGTTAAAAAA+TGG | + | chr8.3:3685731-3685750 | None:intergenic | 15.0% |
| !! | TCAAAAAAAATTAGTTAGTA+CGG | + | chr8.3:3685446-3685465 | None:intergenic | 15.0% |
| !! | TGTAAACAATTTAAAAGTAA+TGG | + | chr8.3:3684942-3684961 | None:intergenic | 15.0% |
| !! | TTTCATAAACTCTTTAATAT+AGG | - | chr8.3:3686052-3686071 | MS.gene012351:intron | 15.0% |
| !!! | AGTATTAGTGTTTTTTATTT+TGG | + | chr8.3:3684691-3684710 | None:intergenic | 15.0% |
| !!! | ATTTTATATGATTAGGAATT+AGG | + | chr8.3:3686940-3686959 | None:intergenic | 15.0% |
| !!! | CAACATTATTTTATATGATT+AGG | + | chr8.3:3686947-3686966 | None:intergenic | 15.0% |
| !!! | TTCCATTCATTTTTTTTAAA+GGG | + | chr8.3:3685652-3685671 | None:intergenic | 15.0% |
| !!! | TTGTTATTGCTTTTATAAAT+TGG | + | chr8.3:3685592-3685611 | None:intergenic | 15.0% |
| !!! | TTTCCATTCATTTTTTTTAA+AGG | + | chr8.3:3685653-3685672 | None:intergenic | 15.0% |
| !! | AAACAATTTAAAAGTAATGG+AGG | + | chr8.3:3684939-3684958 | None:intergenic | 20.0% |
| !! | AAACTCTTTAATATAGGTTA+TGG | - | chr8.3:3686058-3686077 | MS.gene012351:intron | 20.0% |
| !! | AAATAACAAAGCATGTATTA+AGG | - | chr8.3:3687084-3687103 | MS.gene012351:intron | 20.0% |
| !! | AATGTTCTTTATAAAGTTGA+TGG | - | chr8.3:3686790-3686809 | MS.gene012351:intron | 20.0% |
| !! | ACCAAAAAATATAAATGTGT+AGG | - | chr8.3:3686508-3686527 | MS.gene012351:intron | 20.0% |
| !! | AGAAATCTGAATAAGAAATT+TGG | + | chr8.3:3686613-3686632 | None:intergenic | 20.0% |
| !! | GATTGAAATGCAATAAATAA+GGG | + | chr8.3:3685412-3685431 | None:intergenic | 20.0% |
| !! | TCACATTAAAAAAATGGAAA+AGG | + | chr8.3:3687123-3687142 | None:intergenic | 20.0% |
| !! | TGATTGAAATGCAATAAATA+AGG | + | chr8.3:3685413-3685432 | None:intergenic | 20.0% |
| !!! | ACCTACACATTTATATTTTT+TGG | + | chr8.3:3686512-3686531 | None:intergenic | 20.0% |
| !!! | CACTACTCAAAATTATTTTA+TGG | - | chr8.3:3685884-3685903 | MS.gene012351:intron | 20.0% |
| !!! | GTCTTATGTGAAATTTTAAT+CGG | + | chr8.3:3684877-3684896 | None:intergenic | 20.0% |
| !!! | TTGTTATTTATTATTACCTC+TGG | + | chr8.3:3687073-3687092 | None:intergenic | 20.0% |
| ! | AAATATAAATGTGTAGGTAC+TGG | - | chr8.3:3686514-3686533 | MS.gene012351:intron | 25.0% |
| ! | ACCATTGGATAGATTTATAT+CGG | - | chr8.3:3684497-3684516 | MS.gene012351:CDS | 25.0% |
| ! | AGGCTTTCACATTAAAAAAA+TGG | + | chr8.3:3687129-3687148 | None:intergenic | 25.0% |
| ! | ATTTAGCACAATAACTGAAA+AGG | + | chr8.3:3684818-3684837 | None:intergenic | 25.0% |
| ! | CACAACATAACATATGAATA+TGG | + | chr8.3:3686379-3686398 | None:intergenic | 25.0% |
| ! | GATAATTTGGACAACAATAA+TGG | - | chr8.3:3685245-3685264 | MS.gene012351:CDS | 25.0% |
| ! | TACATTAGACAATCTTTCTT+TGG | - | chr8.3:3686709-3686728 | MS.gene012351:intron | 25.0% |
| ! | TATATGTATGGTTATATGTG+TGG | + | chr8.3:3684748-3684767 | None:intergenic | 25.0% |
| ! | TATTGTTGTCCAAATTATCT+AGG | + | chr8.3:3685244-3685263 | None:intergenic | 25.0% |
| ! | TGATAAATAGCATCAACAAT+GGG | - | chr8.3:3684469-3684488 | MS.gene012351:CDS | 25.0% |
| ! | TTGATAAATAGCATCAACAA+TGG | - | chr8.3:3684468-3684487 | MS.gene012351:CDS | 25.0% |
| !! | AAAAACAACTACATTTTTGC+AGG | - | chr8.3:3686243-3686262 | MS.gene012351:intron | 25.0% |
| !! | GACCCTTTAAAAAAAATGAA+TGG | - | chr8.3:3685647-3685666 | MS.gene012351:intron | 25.0% |
| !! | TTGATTTTCTCTCATTTGAT+TGG | + | chr8.3:3685825-3685844 | None:intergenic | 25.0% |
| !!! | ATTATTCATTAGTCTTGCTA+AGG | - | chr8.3:3685062-3685081 | MS.gene012351:CDS | 25.0% |
| !!! | TTATGTGAAATTTTAATCGG+TGG | + | chr8.3:3684874-3684893 | None:intergenic | 25.0% |
| !!! | TTATTCATTAGTCTTGCTAA+GGG | - | chr8.3:3685063-3685082 | MS.gene012351:CDS | 25.0% |
| AAAATCGAAGACGCATAAAA+GGG | - | chr8.3:3686743-3686762 | MS.gene012351:intron | 30.0% | |
| AACCGACACTTCAAAATAAA+TGG | - | chr8.3:3685622-3685641 | MS.gene012351:intron | 30.0% | |
| AAGCAATCATAAGCAACAAT+TGG | - | chr8.3:3687255-3687274 | MS.gene012351:CDS | 30.0% | |
| ACCGATATAAATCTATCCAA+TGG | + | chr8.3:3684501-3684520 | None:intergenic | 30.0% | |
| AGACAATCTTTCTTTGGATT+TGG | - | chr8.3:3686715-3686734 | MS.gene012351:intron | 30.0% | |
| AGCAATCATAAGCAACAATT+GGG | - | chr8.3:3687256-3687275 | MS.gene012351:CDS | 30.0% | |
| AGCTAATAATGCAGAAGTAA+GGG | - | chr8.3:3686991-3687010 | MS.gene012351:intron | 30.0% | |
| ATGCAAAAGAAGTTCTTTCA+GGG | - | chr8.3:3687023-3687042 | MS.gene012351:intron | 30.0% | |
| CAAGATATTAAGGTTTCCTT+TGG | + | chr8.3:3684610-3684629 | None:intergenic | 30.0% | |
| GACAATCTTTCTTTGGATTT+GGG | - | chr8.3:3686716-3686735 | MS.gene012351:intron | 30.0% | |
| GACATCTAATATAAGACAGA+AGG | - | chr8.3:3685541-3685560 | MS.gene012351:CDS | 30.0% | |
| GAGTATGTAGTTAACAAACT+TGG | - | chr8.3:3686481-3686500 | MS.gene012351:intron | 30.0% | |
| GTTGTACTGAAATCGAAAAA+GGG | + | chr8.3:3685374-3685393 | None:intergenic | 30.0% | |
| GTTGTTCTTTCAAACAAACA+TGG | - | chr8.3:3686168-3686187 | MS.gene012351:intron | 30.0% | |
| GTTTGTTTACCAACAAACTT+TGG | + | chr8.3:3686352-3686371 | None:intergenic | 30.0% | |
| TGTTGTACTGAAATCGAAAA+AGG | + | chr8.3:3685375-3685394 | None:intergenic | 30.0% | |
| ! | AATTGTTGCTTATGATTGCT+TGG | + | chr8.3:3687256-3687275 | None:intergenic | 30.0% |
| ! | ATGCAATAAATAAGGGTATG+CGG | + | chr8.3:3685405-3685424 | None:intergenic | 30.0% |
| ! | GAGTCTTATGTGAAATTTGA+CGG | + | chr8.3:3684901-3684920 | None:intergenic | 30.0% |
| ! | TTAGTCACTATGAAGTGTTT+AGG | + | chr8.3:3687368-3687387 | None:intergenic | 30.0% |
| !! | TTATAAAGTTGATGGTCACT+GGG | - | chr8.3:3686798-3686817 | MS.gene012351:intron | 30.0% |
| !! | TTTATAAAGTTGATGGTCAC+TGG | - | chr8.3:3686797-3686816 | MS.gene012351:intron | 30.0% |
| !!! | CACCATTTATTTTGAAGTGT+CGG | + | chr8.3:3685627-3685646 | None:intergenic | 30.0% |
| !!! | GTTCACTTTTGAAACAATTG+AGG | + | chr8.3:3686422-3686441 | None:intergenic | 30.0% |
| !!! | TTGTATTGTTTTAGAGTGTG+TGG | - | chr8.3:3687195-3687214 | MS.gene012351:intron | 30.0% |
| ACTGTTCACCAATTCAAAAG+TGG | - | chr8.3:3687408-3687427 | MS.gene012351:CDS | 35.0% | |
| AGAGTCAAAAGGAGAAACTT+GGG | - | chr8.3:3687340-3687359 | MS.gene012351:CDS | 35.0% | |
| ATCAAGATAAACACGTCATG+TGG | - | chr8.3:3685956-3685975 | MS.gene012351:intron | 35.0% | |
| ATCTTTCTTTGGATTTGGGT+CGG | - | chr8.3:3686720-3686739 | MS.gene012351:intron | 35.0% | |
| ATGATGAGTTTCAGCAAGAA+TGG | + | chr8.3:3684583-3684602 | None:intergenic | 35.0% | |
| ATTTATCAAGTCTACACCTG+TGG | + | chr8.3:3684457-3684476 | None:intergenic | 35.0% | |
| CAGCTAATAATGCAGAAGTA+AGG | - | chr8.3:3686990-3687009 | MS.gene012351:intron | 35.0% | |
| CCTGTTCAAGCAAGATATTA+AGG | + | chr8.3:3684620-3684639 | None:intergenic | 35.0% | |
| CCTTAATATCTTGCTTGAAC+AGG | - | chr8.3:3684617-3684636 | MS.gene012351:CDS | 35.0% | |
| CGACACTTCAAAATAAATGG+TGG | - | chr8.3:3685625-3685644 | MS.gene012351:intron | 35.0% | |
| CTGTTCACCAATTCAAAAGT+GGG | - | chr8.3:3687409-3687428 | MS.gene012351:CDS | 35.0% | |
| CTTAGAGAAAGAGAGTCAAA+AGG | - | chr8.3:3687329-3687348 | MS.gene012351:CDS | 35.0% | |
| GAAAATCGAAGACGCATAAA+AGG | - | chr8.3:3686742-3686761 | MS.gene012351:intron | 35.0% | |
| GACACTTAATATGAGATGCA+TGG | + | chr8.3:3685314-3685333 | None:intergenic | 35.0% | |
| GATCCTTAACAAAAGGAGTA+TGG | + | chr8.3:3687051-3687070 | None:intergenic | 35.0% | |
| GATGCAAAAGAAGTTCTTTC+AGG | - | chr8.3:3687022-3687041 | MS.gene012351:intron | 35.0% | |
| GATTTATATCGGTAGTTGCA+TGG | - | chr8.3:3684508-3684527 | MS.gene012351:CDS | 35.0% | |
| GCAATCATAAGCAACAATTG+GGG | - | chr8.3:3687257-3687276 | MS.gene012351:CDS | 35.0% | |
| GTGACTAATAGCAAAGAAGA+TGG | - | chr8.3:3687380-3687399 | MS.gene012351:CDS | 35.0% | |
| TGATGAGTTTCAGCAAGAAT+GGG | + | chr8.3:3684582-3684601 | None:intergenic | 35.0% | |
| TTCAGATTTCTTCCAATTCC+TGG | - | chr8.3:3686622-3686641 | MS.gene012351:intron | 35.0% | |
| ! | AACAGAATCAGCTCTTGTTT+GGG | - | chr8.3:3687220-3687239 | MS.gene012351:intron | 35.0% |
| ! | TTGAACAGGTATTGTTTGGT+GGG | - | chr8.3:3684631-3684650 | MS.gene012351:CDS | 35.0% |
| ! | TTGCTTGAACAGGTATTGTT+TGG | - | chr8.3:3684627-3684646 | MS.gene012351:CDS | 35.0% |
| !! | CTTTTGACTCTCTTTCTCTA+AGG | + | chr8.3:3687331-3687350 | None:intergenic | 35.0% |
| !! | TCCAATTCCTGGTATTGATT+GGG | - | chr8.3:3686633-3686652 | MS.gene012351:intron | 35.0% |
| !! | TTCCAATTCCTGGTATTGAT+TGG | - | chr8.3:3686632-3686651 | MS.gene012351:intron | 35.0% |
| AAACTGCATCTCCACAATCA+TGG | - | chr8.3:3686565-3686584 | MS.gene012351:intron | 40.0% | |
| AAAGCCTAAATGTGCATGCA+TGG | - | chr8.3:3687142-3687161 | MS.gene012351:intron | 40.0% | |
| ACATCCATGCATGCACATTT+AGG | + | chr8.3:3687149-3687168 | None:intergenic | 40.0% | |
| ACCCAATCAATACCAGGAAT+TGG | + | chr8.3:3686637-3686656 | None:intergenic | 40.0% | |
| ACCTCTGGATCCTTAACAAA+AGG | + | chr8.3:3687058-3687077 | None:intergenic | 40.0% | |
| AGATCACAGCTTCAATGGTA+TGG | - | chr8.3:3684417-3684436 | MS.gene012351:CDS | 40.0% | |
| AGCTGCATCCTTCAATGTTA+CGG | + | chr8.3:3686975-3686994 | None:intergenic | 40.0% | |
| ATGGAGGCAGCACTATTTAA+TGG | + | chr8.3:3684923-3684942 | None:intergenic | 40.0% | |
| CAACAATGGGAAAACACCAT+TGG | - | chr8.3:3684482-3684501 | MS.gene012351:CDS | 40.0% | |
| CAACAGAATCAGCTCTTGTT+TGG | - | chr8.3:3687219-3687238 | MS.gene012351:intron | 40.0% | |
| CATATGTCTCTCCATGATTG+TGG | + | chr8.3:3686579-3686598 | None:intergenic | 40.0% | |
| CTAATAGCAAAGAAGATGGC+TGG | - | chr8.3:3687384-3687403 | MS.gene012351:CDS | 40.0% | |
| GAAAATGCTAACTAGTGCAG+CGG | - | chr8.3:3685267-3685286 | MS.gene012351:CDS | 40.0% | |
| GAAACTCATCATGTCTCCAA+AGG | - | chr8.3:3684591-3684610 | MS.gene012351:CDS | 40.0% | |
| GAGAGTCAAAAGGAGAAACT+TGG | - | chr8.3:3687339-3687358 | MS.gene012351:CDS | 40.0% | |
| GGAACAACTCCAAAACTTTG+TGG | + | chr8.3:3684552-3684571 | None:intergenic | 40.0% | |
| GGTGAATGTGTATATTCCAC+AGG | - | chr8.3:3684438-3684457 | MS.gene012351:CDS | 40.0% | |
| TACCATTGAAGCTGTGATCT+AGG | + | chr8.3:3684417-3684436 | None:intergenic | 40.0% | |
| TATGTTTCCCTTCTGATCAG+TGG | + | chr8.3:3686302-3686321 | None:intergenic | 40.0% | |
| TCAGCAAGAATGGGATTGTA+GGG | + | chr8.3:3684573-3684592 | None:intergenic | 40.0% | |
| TGTCTCATTTGAGCTCTACA+CGG | + | chr8.3:3685525-3685544 | None:intergenic | 40.0% | |
| TTACATGCCACTGATCAGAA+GGG | - | chr8.3:3686292-3686311 | MS.gene012351:intron | 40.0% | |
| TTACCAACAAACTTTGGCAG+TGG | + | chr8.3:3686346-3686365 | None:intergenic | 40.0% | |
| TTCAGCAAGAATGGGATTGT+AGG | + | chr8.3:3684574-3684593 | None:intergenic | 40.0% | |
| ! | ACAGAATCAGCTCTTGTTTG+GGG | - | chr8.3:3687221-3687240 | MS.gene012351:intron | 40.0% |
| ! | ACTACACGACCACAAAGTTT+TGG | - | chr8.3:3684540-3684559 | MS.gene012351:CDS | 40.0% |
| ! | ATTTGAGACTCTGAGAGAAC+GGG | + | chr8.3:3686199-3686218 | None:intergenic | 40.0% |
| ! | CAAACAAGAGCTGATTCTGT+TGG | + | chr8.3:3687221-3687240 | None:intergenic | 40.0% |
| ! | CTTGAACAGGTATTGTTTGG+TGG | - | chr8.3:3684630-3684649 | MS.gene012351:CDS | 40.0% |
| ! | GATTTGAGACTCTGAGAGAA+CGG | + | chr8.3:3686200-3686219 | None:intergenic | 40.0% |
| ! | GCTCCATACTCCTTTTGTTA+AGG | - | chr8.3:3687045-3687064 | MS.gene012351:intron | 40.0% |
| ! | TCCTTTTGTTAAGGATCCAG+AGG | - | chr8.3:3687054-3687073 | MS.gene012351:intron | 40.0% |
| ! | TCTAGCTACACGAGCTTTAA+AGG | + | chr8.3:3685915-3685934 | None:intergenic | 40.0% |
| !! | ATTCCTGGTATTGATTGGGT+TGG | - | chr8.3:3686637-3686656 | MS.gene012351:intron | 40.0% |
| !! | TTTGGGACCCACTTTTGAAT+TGG | + | chr8.3:3687419-3687438 | None:intergenic | 40.0% |
| AAGAGAGGCAAAGAACACTG+TGG | - | chr8.3:3687286-3687305 | MS.gene012351:CDS | 45.0% | |
| CAATTGGGGAAAAGCAAGAG+AGG | - | chr8.3:3687271-3687290 | MS.gene012351:CDS | 45.0% | |
| CTTACATGCCACTGATCAGA+AGG | - | chr8.3:3686291-3686310 | MS.gene012351:intron | 45.0% | |
| CTTCTGATCAGTGGCATGTA+AGG | + | chr8.3:3686293-3686312 | None:intergenic | 45.0% | |
| GGAGTAGAAGTTGACATGCA+TGG | - | chr8.3:3686535-3686554 | MS.gene012351:intron | 45.0% | |
| TCTCCACTGCCAAAGTTTGT+TGG | - | chr8.3:3686340-3686359 | MS.gene012351:intron | 45.0% | |
| TGCCTAGATCACAGCTTCAA+TGG | - | chr8.3:3684412-3684431 | MS.gene012351:CDS | 45.0% | |
| TTGCAGCACCGTAACATTGA+AGG | - | chr8.3:3686964-3686983 | MS.gene012351:intron | 45.0% | |
| TTGCCAACCCAATCAATACC+AGG | + | chr8.3:3686643-3686662 | None:intergenic | 45.0% | |
| ! | ACAGGTATTGTTTGGTGGGA+TGG | - | chr8.3:3684635-3684654 | MS.gene012351:CDS | 45.0% |
| !! | AATTAATTAAATTATATGTA+TGG | + | chr8.3:3684760-3684779 | None:intergenic | 5.0% |
| ACACTGTGGAGGAAACTCAG+AGG | - | chr8.3:3687300-3687319 | MS.gene012351:CDS | 50.0% | |
| ACTATCCGGTGCCTAGAAAC+AGG | - | chr8.3:3686667-3686686 | MS.gene012351:intron | 50.0% | |
| AGAGGCAAAGAACACTGTGG+AGG | - | chr8.3:3687289-3687308 | MS.gene012351:CDS | 50.0% | |
| CAAACTTTGGCAGTGGAGAG+TGG | + | chr8.3:3686339-3686358 | None:intergenic | 50.0% | |
| GCATGTAAGGCAGATACCTG+AGG | + | chr8.3:3686280-3686299 | None:intergenic | 50.0% | |
| GTAAGGCAGATACCTGAGGA+TGG | + | chr8.3:3686276-3686295 | None:intergenic | 50.0% | |
| TGTAGCTCAATTCTGCCACC+AGG | + | chr8.3:3686693-3686712 | None:intergenic | 50.0% | |
| ! | GGGTTGGCAATGTCACTATC+CGG | - | chr8.3:3686653-3686672 | MS.gene012351:intron | 50.0% |
| ! | GGTATTGTTTGGTGGGATGG+TGG | - | chr8.3:3684638-3684657 | MS.gene012351:CDS | 50.0% |
| !! | AAGTTGATGGTCACTGGGAC+AGG | - | chr8.3:3686803-3686822 | MS.gene012351:intron | 50.0% |
| !! | TTGTTTGGTGGGATGGTGGA+AGG | - | chr8.3:3684642-3684661 | MS.gene012351:CDS | 50.0% |
| CTAGTGCAGCGGCACTTGTT+AGG | - | chr8.3:3685278-3685297 | MS.gene012351:CDS | 55.0% | |
| GCAGGTTTCACACCATCCTC+AGG | - | chr8.3:3686261-3686280 | MS.gene012351:intron | 55.0% | |
| ! | AGACTCTGAGAGAACGGGCT+TGG | + | chr8.3:3686194-3686213 | None:intergenic | 55.0% |
| !! | AGGGTGGCAATAGGGGCATT+TGG | + | chr8.3:3687437-3687456 | None:intergenic | 55.0% |
| !! | GGGTGGCAATAGGGGCATTT+GGG | + | chr8.3:3687436-3687455 | None:intergenic | 55.0% |
| GTGCCTAGAAACAGGCCTGG+TGG | - | chr8.3:3686675-3686694 | MS.gene012351:intron | 60.0% | |
| ! | CTGCCACCAGGCCTGTTTCT+AGG | + | chr8.3:3686681-3686700 | None:intergenic | 60.0% |
| !! | CCAGGCCTGTTTCTAGGCAC+CGG | + | chr8.3:3686675-3686694 | None:intergenic | 60.0% |
| CCGGTGCCTAGAAACAGGCC+TGG | - | chr8.3:3686672-3686691 | MS.gene012351:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 3684411 | 3687460 | 3684411 | ID=MS.gene012351 |
| chr8.3 | mRNA | 3684411 | 3687460 | 3684411 | ID=MS.gene012351.t1;Parent=MS.gene012351 |
| chr8.3 | exon | 3687233 | 3687460 | 3687233 | ID=MS.gene012351.t1.exon1;Parent=MS.gene012351.t1 |
| chr8.3 | CDS | 3687233 | 3687460 | 3687233 | ID=cds.MS.gene012351.t1;Parent=MS.gene012351.t1 |
| chr8.3 | exon | 3685510 | 3685606 | 3685510 | ID=MS.gene012351.t1.exon2;Parent=MS.gene012351.t1 |
| chr8.3 | CDS | 3685510 | 3685606 | 3685510 | ID=cds.MS.gene012351.t1;Parent=MS.gene012351.t1 |
| chr8.3 | exon | 3685047 | 3685341 | 3685047 | ID=MS.gene012351.t1.exon3;Parent=MS.gene012351.t1 |
| chr8.3 | CDS | 3685047 | 3685341 | 3685047 | ID=cds.MS.gene012351.t1;Parent=MS.gene012351.t1 |
| chr8.3 | exon | 3684796 | 3684901 | 3684796 | ID=MS.gene012351.t1.exon4;Parent=MS.gene012351.t1 |
| chr8.3 | CDS | 3684796 | 3684901 | 3684796 | ID=cds.MS.gene012351.t1;Parent=MS.gene012351.t1 |
| chr8.3 | exon | 3684411 | 3684662 | 3684411 | ID=MS.gene012351.t1.exon5;Parent=MS.gene012351.t1 |
| chr8.3 | CDS | 3684411 | 3684662 | 3684411 | ID=cds.MS.gene012351.t1;Parent=MS.gene012351.t1 |
| Gene Sequence |
| Protein sequence |
