AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012454

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012454.t1 MTR_4g129335 95.109 184 6 3 1 183 1 182 7.62e-98 281
MS.gene012454.t1 MTR_4g129370 95.109 184 6 3 1 183 1 182 7.62e-98 281
MS.gene012454.t1 MTR_3g078120 33.099 142 82 4 29 159 1 140 7.64e-17 73.9
MS.gene012454.t1 MTR_6g007680 32.432 148 87 6 31 177 1 136 3.49e-14 67.0
MS.gene012454.t1 MTR_3g114500 37.607 117 64 5 33 147 5 114 2.86e-13 63.9
MS.gene012454.t1 MTR_2g041200 31.148 122 73 3 39 149 33 154 6.72e-13 63.9
MS.gene012454.t1 MTR_8g009190 34.307 137 72 4 26 149 19 150 6.84e-13 65.9
MS.gene012454.t1 MTR_4g063070 32.331 133 65 6 37 146 248 378 1.20e-12 65.5
MS.gene012454.t1 MTR_7g076250 34.667 75 48 1 81 154 66 140 1.56e-12 63.2
MS.gene012454.t1 MTR_6g007670 38.462 91 49 2 64 153 137 221 4.49e-12 63.2
MS.gene012454.t1 MTR_2g055790 35.772 123 68 4 36 153 33 149 4.83e-12 62.0
MS.gene012454.t1 MTR_5g064980 30.469 128 72 3 31 146 57 179 5.53e-12 63.5
MS.gene012454.t1 MTR_3g078470 40.845 71 40 1 84 152 82 152 8.34e-12 62.0
MS.gene012454.t1 MTR_4g106680 29.936 157 93 5 26 165 40 196 1.12e-11 62.4
MS.gene012454.t1 MTR_5g076990 31.613 155 95 5 3 151 4 153 1.17e-11 62.4
MS.gene012454.t1 MTR_4g108830 42.424 66 37 1 84 149 155 219 1.19e-11 61.2
MS.gene012454.t1 MTR_7g096690 29.870 154 89 4 14 154 3 150 1.29e-11 62.4
MS.gene012454.t1 MTR_1g026070 34.783 115 68 4 33 146 5 113 1.37e-11 59.7
MS.gene012454.t1 MTR_5g064990 28.369 141 88 3 31 163 67 202 1.53e-11 62.4
MS.gene012454.t1 MTR_4g108830 42.424 66 37 1 84 149 127 191 1.55e-11 60.5
MS.gene012454.t1 MTR_8g066740 31.206 141 84 5 29 159 22 159 1.81e-11 61.6
MS.gene012454.t1 MTR_7g116200 34.568 81 52 1 84 164 74 153 1.91e-11 60.1
MS.gene012454.t1 MTR_7g073200 35.065 77 50 0 82 158 85 161 1.91e-11 60.1
MS.gene012454.t1 MTR_8g073120 30.579 121 78 3 34 148 22 142 2.41e-11 60.5
MS.gene012454.t1 MTR_3g110190 30.769 130 85 3 27 152 12 140 2.69e-11 61.6
MS.gene012454.t1 MTR_1g492830 26.241 141 100 1 21 157 1 141 3.25e-11 60.1
MS.gene012454.t1 MTR_4g120270 41.772 79 42 2 84 162 86 160 3.78e-11 60.5
MS.gene012454.t1 MTR_4g030070 34.940 83 54 0 74 156 80 162 4.97e-11 59.7
MS.gene012454.t1 MTR_2g436100 39.394 99 57 2 84 179 99 197 5.19e-11 60.5
MS.gene012454.t1 MTR_2g090905 36.585 82 46 1 81 156 42 123 5.71e-11 57.8
MS.gene012454.t1 MTR_7g116220 38.806 67 38 1 84 147 76 142 6.13e-11 58.9
MS.gene012454.t1 MTR_5g022920 30.702 114 58 2 54 146 118 231 6.80e-11 59.7
MS.gene012454.t1 MTR_2g035800 40.000 80 48 0 82 161 80 159 7.41e-11 58.2
MS.gene012454.t1 MTR_5g092750 46.939 49 26 0 101 149 182 230 7.44e-11 59.3
MS.gene012454.t1 MTR_8g089880 36.250 80 51 0 84 163 133 212 7.61e-11 59.7
MS.gene012454.t1 MTR_3g464780 40.278 72 42 1 99 170 127 197 8.07e-11 59.7
MS.gene012454.t1 MTR_3g099650 32.283 127 67 5 30 146 61 178 8.95e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012454.t1 AT2G18670 40.252 159 82 3 16 173 24 170 3.74e-31 111
MS.gene012454.t1 AT4G30370 39.231 130 78 1 20 149 32 160 9.78e-26 97.8
MS.gene012454.t1 AT4G09100 31.707 123 65 4 39 149 15 130 5.60e-14 65.9
MS.gene012454.t1 AT2G42360 32.886 149 93 4 18 160 21 168 1.29e-13 67.0
MS.gene012454.t1 AT2G17450 31.447 159 92 6 2 152 4 153 2.80e-13 65.1
MS.gene012454.t1 AT3G10910 38.095 84 51 1 82 165 92 174 4.04e-13 64.7
MS.gene012454.t1 AT3G20395 41.096 73 41 1 84 156 153 223 5.63e-13 65.1
MS.gene012454.t1 AT2G27940 35.227 88 49 2 84 164 121 207 1.04e-12 64.7
MS.gene012454.t1 AT3G62690 41.333 75 43 1 81 155 90 163 1.91e-12 64.3
MS.gene012454.t1 AT3G61460 31.973 147 82 4 42 178 23 161 2.75e-12 62.4
MS.gene012454.t1 AT5G42200 30.303 132 77 3 29 152 28 152 2.80e-12 62.0
MS.gene012454.t1 AT5G27420 28.313 166 111 4 1 164 24 183 3.56e-12 63.9
MS.gene012454.t1 AT5G01880 34.091 88 56 1 61 146 60 147 5.05e-12 61.2
MS.gene012454.t1 AT5G05280 44.828 58 32 0 102 159 111 168 7.56e-12 61.2
MS.gene012454.t1 AT4G10150 36.709 79 50 0 68 146 75 153 1.59e-11 61.2
MS.gene012454.t1 AT4G10160 35.443 79 51 0 68 146 61 139 1.90e-11 60.8
MS.gene012454.t1 AT3G05200 28.485 165 100 5 6 162 30 184 2.51e-11 61.6
MS.gene012454.t1 AT1G63840 34.884 129 67 6 32 147 10 134 3.25e-11 59.3
MS.gene012454.t1 AT5G66070 33.036 112 54 2 54 146 109 218 6.09e-11 59.7
MS.gene012454.t1 AT5G66070 33.036 112 54 2 54 146 109 218 6.09e-11 59.7
MS.gene012454.t1 AT2G17730 31.818 132 65 3 43 149 110 241 6.18e-11 59.7
MS.gene012454.t1 AT5G10380 42.424 66 38 0 84 149 115 180 9.54e-11 59.7

Find 77 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAGGTTCTTCACGATTT+TGG 0.131959 8.3:+2110251 MS.gene012454:CDS
AGGAGATTAGGGTTTGATTT+TGG 0.234485 8.3:-2109803 None:intergenic
GGAAAAGGGAGAGGAGATTA+GGG 0.247255 8.3:-2109814 None:intergenic
AGGAAAAGGGAGAGGAGATT+AGG 0.279449 8.3:-2109815 None:intergenic
TTCAGGATCGCCATGGTGTT+GGG 0.309331 8.3:-2109774 None:intergenic
TTCTCGTTGTGCTGTTTGTT+TGG 0.334977 8.3:+2110063 MS.gene012454:CDS
TATTGATACCTGGCTTCTTA+AGG 0.367630 8.3:+2110153 MS.gene012454:CDS
TCCCTCTTCTTTCTCTTCCT+CGG 0.367925 8.3:+2109866 MS.gene012454:CDS
CGCTCAACCTTCACAAGGTT+CGG 0.370509 8.3:+2110216 MS.gene012454:CDS
TGATGATGGGTTTGAGGAAA+AGG 0.391533 8.3:-2109829 None:intergenic
TCAACAACCTCCCCAACTTC+AGG 0.402288 8.3:+2110011 MS.gene012454:CDS
TCACAAGCTATTATTACAAA+AGG 0.402643 8.3:-2110303 None:intergenic
ACAAACAGCACAACGAGAAT+CGG 0.409644 8.3:-2110059 None:intergenic
GACGGAAACGGAGGCGGTGG+AGG 0.416739 8.3:-2109934 None:intergenic
ACCTTTGGTGATCCTGAAGT+TGG 0.427443 8.3:-2110023 None:intergenic
CCTTTGGTGATCCTGAAGTT+GGG 0.434550 8.3:-2110022 None:intergenic
TAGGACGGAAACGGAGGCGG+TGG 0.438475 8.3:-2109937 None:intergenic
CGTTGTGCTGTTTGTTTGGA+CGG 0.442179 8.3:+2110067 MS.gene012454:CDS
GAAGAGGTTGAGGAGGAGAA+AGG 0.454979 8.3:-2109897 None:intergenic
GGGTTCAGAAACGGAACCTT+TGG 0.469591 8.3:-2110038 None:intergenic
ACGGAGGCGGTGGAGGGCGC+CGG 0.472988 8.3:-2109927 None:intergenic
CGGCTAAGAGGAAGAGGTTG+AGG 0.481229 8.3:-2109907 None:intergenic
ACGAGAATCGGGTTCAGAAA+CGG 0.482086 8.3:-2110047 None:intergenic
GTTCAGGATCGCCATGGTGT+TGG 0.482441 8.3:-2109775 None:intergenic
GAAGCATGATGATGGGTTTG+AGG 0.492199 8.3:-2109835 None:intergenic
ACCTTGTGAAGGTTGAGCGT+TGG 0.493031 8.3:-2110212 None:intergenic
TGTGAGGAGAAGCATGATGA+TGG 0.495135 8.3:-2109843 None:intergenic
CAAACAGCACAACGAGAATC+GGG 0.497987 8.3:-2110058 None:intergenic
GGTGGAGGGCGCCGGCTAAG+AGG 0.499890 8.3:-2109919 None:intergenic
GGTTGAGCGTTGGACCGAAC+CGG 0.501540 8.3:-2110202 None:intergenic
CTCAACCTCTTCCTCTTAGC+CGG 0.507892 8.3:+2109908 MS.gene012454:CDS
GATGATGGGTTTGAGGAAAA+GGG 0.516706 8.3:-2109828 None:intergenic
AGAGAAAGAAGAGGGATGTG+AGG 0.517778 8.3:-2109859 None:intergenic
CACAAGCTATTATTACAAAA+GGG 0.519132 8.3:-2110302 None:intergenic
ATCGGAGATGTATTGATACC+TGG 0.519657 8.3:+2110143 MS.gene012454:CDS
ACGGAAACGGAGGCGGTGGA+GGG 0.523526 8.3:-2109933 None:intergenic
TGGGTTTGAGGAAAAGGGAG+AGG 0.528031 8.3:-2109823 None:intergenic
CTACTTGCCGTACACCGGTT+CGG 0.530310 8.3:+2110188 MS.gene012454:CDS
GAGTAGGACGGAAACGGAGG+CGG 0.531377 8.3:-2109940 None:intergenic
GGGCGCCGGCTAAGAGGAAG+AGG 0.535078 8.3:-2109913 None:intergenic
GGAGAAAGGCGGCGAAACCG+AGG 0.539177 8.3:-2109883 None:intergenic
GGTGAGGGATTGAAGACGGC+GGG 0.544512 8.3:-2109966 None:intergenic
TGAAGACGGCGGGTTGGAGT+AGG 0.545882 8.3:-2109956 None:intergenic
CGTTGGACCGAACCGGTGTA+CGG 0.546340 8.3:-2110195 None:intergenic
CTTTGGTGATCCTGAAGTTG+GGG 0.553407 8.3:-2110021 None:intergenic
AGGGATTGAAGACGGCGGGT+TGG 0.557895 8.3:-2109962 None:intergenic
GGGAGGTTGTTGATTTCGCG+AGG 0.564332 8.3:-2110001 None:intergenic
AGGGAGGAAAGCGTCGGTGA+GGG 0.565102 8.3:-2109981 None:intergenic
CCATGGTGTTGGGGATGAGA+AGG 0.567157 8.3:-2109764 None:intergenic
GGGTTGGAGTAGGACGGAAA+CGG 0.569430 8.3:-2109946 None:intergenic
TCGGTTGTAGAACAAGATGA+AGG 0.570752 8.3:+2110235 MS.gene012454:CDS
CGAACCGGTGTACGGCAAGT+AGG 0.574174 8.3:-2110187 None:intergenic
TGGTGATCCTGAAGTTGGGG+AGG 0.587257 8.3:-2110018 None:intergenic
CGTGGCAACCTTAAGAAGCC+AGG 0.587413 8.3:-2110161 None:intergenic
GGTTGTTGATTTCGCGAGGG+AGG 0.591963 8.3:-2109997 None:intergenic
CTAAGAGGAAGAGGTTGAGG+AGG 0.593800 8.3:-2109904 None:intergenic
GTGTCCTACTTGCCGTACAC+CGG 0.602666 8.3:+2110183 MS.gene012454:CDS
GTTGTTGTTCAGGATCGCCA+TGG 0.605538 8.3:-2109781 None:intergenic
GTGAGGAGAAGCATGATGAT+GGG 0.607789 8.3:-2109842 None:intergenic
ACCGAGGAAGAGAAAGAAGA+GGG 0.608693 8.3:-2109867 None:intergenic
AACCGAGGAAGAGAAAGAAG+AGG 0.612058 8.3:-2109868 None:intergenic
TCAGGATCGCCATGGTGTTG+GGG 0.615546 8.3:-2109773 None:intergenic
CGTCGGTGAGGGATTGAAGA+CGG 0.626086 8.3:-2109970 None:intergenic
CCCAACTTCAGGATCACCAA+AGG 0.637688 8.3:+2110022 MS.gene012454:CDS
GTGTTGGGGATGAGAAGGCA+TGG 0.640252 8.3:-2109759 None:intergenic
GAGGGAGGAAAGCGTCGGTG+AGG 0.640961 8.3:-2109982 None:intergenic
TCTACAACCGAACCTTGTGA+AGG 0.648198 8.3:-2110223 None:intergenic
TTGGAGTAGGACGGAAACGG+AGG 0.653534 8.3:-2109943 None:intergenic
GAGGTTGAGGAGGAGAAAGG+CGG 0.653553 8.3:-2109894 None:intergenic
CCTTCTCATCCCCAACACCA+TGG 0.654904 8.3:+2109764 MS.gene012454:CDS
GGAGGTTGTTGATTTCGCGA+GGG 0.655842 8.3:-2110000 None:intergenic
CGGTGAGGGATTGAAGACGG+CGG 0.657153 8.3:-2109967 None:intergenic
TTCGCGAGGGAGGAAAGCGT+CGG 0.671242 8.3:-2109987 None:intergenic
TGTAGAAATCTCGCTGCCTG+TGG 0.675543 8.3:+2110109 MS.gene012454:CDS
GACGGCGGGTTGGAGTAGGA+CGG 0.677108 8.3:-2109952 None:intergenic
TCCAACGCTCAACCTTCACA+AGG 0.693145 8.3:+2110211 MS.gene012454:CDS
TGTACGGCAAGTAGGACACG+TGG 0.730422 8.3:-2110179 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTTGGTTGTTGTTC+AGG - chr8.3:2109794-2109813 None:intergenic 30.0%
TATTGATACCTGGCTTCTTA+AGG + chr8.3:2110153-2110172 MS.gene012454:CDS 35.0%
! ATGAAGGTTCTTCACGATTT+TGG + chr8.3:2110251-2110270 MS.gene012454:CDS 35.0%
!! AGGAGATTAGGGTTTGATTT+TGG - chr8.3:2109806-2109825 None:intergenic 35.0%
ACAAACAGCACAACGAGAAT+CGG - chr8.3:2110062-2110081 None:intergenic 40.0%
TCGGTTGTAGAACAAGATGA+AGG + chr8.3:2110235-2110254 MS.gene012454:CDS 40.0%
! ACGGTTTTCGTAATGGTCAA+TGG + chr8.3:2110086-2110105 MS.gene012454:CDS 40.0%
! ATCGGAGATGTATTGATACC+TGG + chr8.3:2110143-2110162 MS.gene012454:CDS 40.0%
! CCTGTGGTCATGTTTTTCAT+CGG + chr8.3:2110125-2110144 MS.gene012454:CDS 40.0%
! TGTTTGGACGGTTTTCGTAA+TGG + chr8.3:2110079-2110098 MS.gene012454:CDS 40.0%
!! GATGATGGGTTTGAGGAAAA+GGG - chr8.3:2109831-2109850 None:intergenic 40.0%
!! TGATGATGGGTTTGAGGAAA+AGG - chr8.3:2109832-2109851 None:intergenic 40.0%
!! TTCTCGTTGTGCTGTTTGTT+TGG + chr8.3:2110063-2110082 MS.gene012454:CDS 40.0%
AACCGAGGAAGAGAAAGAAG+AGG - chr8.3:2109871-2109890 None:intergenic 45.0%
ACCGAGGAAGAGAAAGAAGA+GGG - chr8.3:2109870-2109889 None:intergenic 45.0%
ACGAGAATCGGGTTCAGAAA+CGG - chr8.3:2110050-2110069 None:intergenic 45.0%
AGAGAAAGAAGAGGGATGTG+AGG - chr8.3:2109862-2109881 None:intergenic 45.0%
AGGAAAAGGGAGAGGAGATT+AGG - chr8.3:2109818-2109837 None:intergenic 45.0%
CAAACAGCACAACGAGAATC+GGG - chr8.3:2110061-2110080 None:intergenic 45.0%
CCGATGAAAAACATGACCAC+AGG - chr8.3:2110128-2110147 None:intergenic 45.0%
GGAAAAGGGAGAGGAGATTA+GGG - chr8.3:2109817-2109836 None:intergenic 45.0%
TCCCTCTTCTTTCTCTTCCT+CGG + chr8.3:2109866-2109885 MS.gene012454:CDS 45.0%
TCTACAACCGAACCTTGTGA+AGG - chr8.3:2110226-2110245 None:intergenic 45.0%
! ACCTTTGGTGATCCTGAAGT+TGG - chr8.3:2110026-2110045 None:intergenic 45.0%
! CCTTTGGTGATCCTGAAGTT+GGG - chr8.3:2110025-2110044 None:intergenic 45.0%
! CTTTGGTGATCCTGAAGTTG+GGG - chr8.3:2110024-2110043 None:intergenic 45.0%
! GTGAGGAGAAGCATGATGAT+GGG - chr8.3:2109845-2109864 None:intergenic 45.0%
! TGTGAGGAGAAGCATGATGA+TGG - chr8.3:2109846-2109865 None:intergenic 45.0%
!! CGTTGTGCTGTTTGTTTGGA+CGG + chr8.3:2110067-2110086 MS.gene012454:CDS 45.0%
!! GAAGCATGATGATGGGTTTG+AGG - chr8.3:2109838-2109857 None:intergenic 45.0%
ACCTTGTGAAGGTTGAGCGT+TGG - chr8.3:2110215-2110234 None:intergenic 50.0%
CCCAACTTCAGGATCACCAA+AGG + chr8.3:2110022-2110041 MS.gene012454:CDS 50.0%
CGCTCAACCTTCACAAGGTT+CGG + chr8.3:2110216-2110235 MS.gene012454:CDS 50.0%
CTAAGAGGAAGAGGTTGAGG+AGG - chr8.3:2109907-2109926 None:intergenic 50.0%
CTCAACCTCTTCCTCTTAGC+CGG + chr8.3:2109908-2109927 MS.gene012454:CDS 50.0%
GAAGAGGTTGAGGAGGAGAA+AGG - chr8.3:2109900-2109919 None:intergenic 50.0%
GGGTTCAGAAACGGAACCTT+TGG - chr8.3:2110041-2110060 None:intergenic 50.0%
TCAACAACCTCCCCAACTTC+AGG + chr8.3:2110011-2110030 MS.gene012454:CDS 50.0%
TCCAACGCTCAACCTTCACA+AGG + chr8.3:2110211-2110230 MS.gene012454:CDS 50.0%
TGGGTTTGAGGAAAAGGGAG+AGG - chr8.3:2109826-2109845 None:intergenic 50.0%
TGTAGAAATCTCGCTGCCTG+TGG + chr8.3:2110109-2110128 MS.gene012454:CDS 50.0%
TTCAGGATCGCCATGGTGTT+GGG - chr8.3:2109777-2109796 None:intergenic 50.0%
! GTTGTTGTTCAGGATCGCCA+TGG - chr8.3:2109784-2109803 None:intergenic 50.0%
!! GGAGGTTGTTGATTTCGCGA+GGG - chr8.3:2110003-2110022 None:intergenic 50.0%
CCTTCTCATCCCCAACACCA+TGG + chr8.3:2109764-2109783 MS.gene012454:CDS 55.0%
CGGCTAAGAGGAAGAGGTTG+AGG - chr8.3:2109910-2109929 None:intergenic 55.0%
CGTCGGTGAGGGATTGAAGA+CGG - chr8.3:2109973-2109992 None:intergenic 55.0%
CGTGGCAACCTTAAGAAGCC+AGG - chr8.3:2110164-2110183 None:intergenic 55.0%
GAGGTTGAGGAGGAGAAAGG+CGG - chr8.3:2109897-2109916 None:intergenic 55.0%
GGGTTGGAGTAGGACGGAAA+CGG - chr8.3:2109949-2109968 None:intergenic 55.0%
GTGTCCTACTTGCCGTACAC+CGG + chr8.3:2110183-2110202 MS.gene012454:CDS 55.0%
GTTCAGGATCGCCATGGTGT+TGG - chr8.3:2109778-2109797 None:intergenic 55.0%
TGGTGATCCTGAAGTTGGGG+AGG - chr8.3:2110021-2110040 None:intergenic 55.0%
TGTACGGCAAGTAGGACACG+TGG - chr8.3:2110182-2110201 None:intergenic 55.0%
TTGGAGTAGGACGGAAACGG+AGG - chr8.3:2109946-2109965 None:intergenic 55.0%
! CCATGGTGTTGGGGATGAGA+AGG - chr8.3:2109767-2109786 None:intergenic 55.0%
! CTACTTGCCGTACACCGGTT+CGG + chr8.3:2110188-2110207 MS.gene012454:CDS 55.0%
! TCAGGATCGCCATGGTGTTG+GGG - chr8.3:2109776-2109795 None:intergenic 55.0%
!! GGGAGGTTGTTGATTTCGCG+AGG - chr8.3:2110004-2110023 None:intergenic 55.0%
!! GGTTGTTGATTTCGCGAGGG+AGG - chr8.3:2110000-2110019 None:intergenic 55.0%
AGGGATTGAAGACGGCGGGT+TGG - chr8.3:2109965-2109984 None:intergenic 60.0%
CGAACCGGTGTACGGCAAGT+AGG - chr8.3:2110190-2110209 None:intergenic 60.0%
CGGTGAGGGATTGAAGACGG+CGG - chr8.3:2109970-2109989 None:intergenic 60.0%
CGTTGGACCGAACCGGTGTA+CGG - chr8.3:2110198-2110217 None:intergenic 60.0%
GAGTAGGACGGAAACGGAGG+CGG - chr8.3:2109943-2109962 None:intergenic 60.0%
GGTGAGGGATTGAAGACGGC+GGG - chr8.3:2109969-2109988 None:intergenic 60.0%
! TTCGCGAGGGAGGAAAGCGT+CGG - chr8.3:2109990-2110009 None:intergenic 60.0%
!! AGGGAGGAAAGCGTCGGTGA+GGG - chr8.3:2109984-2110003 None:intergenic 60.0%
!! GGTTGAGCGTTGGACCGAAC+CGG - chr8.3:2110205-2110224 None:intergenic 60.0%
!! TGAAGACGGCGGGTTGGAGT+AGG - chr8.3:2109959-2109978 None:intergenic 60.0%
ACGGAAACGGAGGCGGTGGA+GGG - chr8.3:2109936-2109955 None:intergenic 65.0%
GGAGAAAGGCGGCGAAACCG+AGG - chr8.3:2109886-2109905 None:intergenic 65.0%
TAGGACGGAAACGGAGGCGG+TGG - chr8.3:2109940-2109959 None:intergenic 65.0%
!! GACGGCGGGTTGGAGTAGGA+CGG - chr8.3:2109955-2109974 None:intergenic 65.0%
!! GAGGGAGGAAAGCGTCGGTG+AGG - chr8.3:2109985-2110004 None:intergenic 65.0%
GACGGAAACGGAGGCGGTGG+AGG - chr8.3:2109937-2109956 None:intergenic 70.0%
!! GGGCGCCGGCTAAGAGGAAG+AGG - chr8.3:2109916-2109935 None:intergenic 70.0%
!! GGTGGAGGGCGCCGGCTAAG+AGG - chr8.3:2109922-2109941 None:intergenic 75.0%
!! ACGGAGGCGGTGGAGGGCGC+CGG - chr8.3:2109930-2109949 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 2109761 2110312 2109761 ID=MS.gene012454
chr8.3 mRNA 2109761 2110312 2109761 ID=MS.gene012454.t1;Parent=MS.gene012454
chr8.3 exon 2109761 2110312 2109761 ID=MS.gene012454.t1.exon1;Parent=MS.gene012454.t1
chr8.3 CDS 2109761 2110312 2109761 ID=cds.MS.gene012454.t1;Parent=MS.gene012454.t1
Gene Sequence

>MS.gene012454

ATGCCTTCTCATCCCCAACACCATGGCGATCCTGAACAACAACCAAAATCAAACCCTAATCTCCTCTCCCTTTTCCTCAAACCCATCATCATGCTTCTCCTCACATCCCTCTTCTTTCTCTTCCTCGGTTTCGCCGCCTTTCTCCTCCTCAACCTCTTCCTCTTAGCCGGCGCCCTCCACCGCCTCCGTTTCCGTCCTACTCCAACCCGCCGTCTTCAATCCCTCACCGACGCTTTCCTCCCTCGCGAAATCAACAACCTCCCCAACTTCAGGATCACCAAAGGTTCCGTTTCTGAACCCGATTCTCGTTGTGCTGTTTGTTTGGACGGTTTTCGTAATGGTCAATGGTGTAGAAATCTCGCTGCCTGTGGTCATGTTTTTCATCGGAGATGTATTGATACCTGGCTTCTTAAGGTTGCCACGTGTCCTACTTGCCGTACACCGGTTCGGTCCAACGCTCAACCTTCACAAGGTTCGGTTGTAGAACAAGATGAAGGTTCTTCACGATTTTGGAATTGCTCTAATAACAACAATCGTTTCACCCTTTTGTAA
Protein sequence

>MS.gene012454.t1

MPSHPQHHGDPEQQPKSNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLAGALHRLRFRPTPTRRLQSLTDAFLPREINNLPNFRITKGSVSEPDSRCAVCLDGFRNGQWCRNLAACGHVFHRRCIDTWLLKVATCPTCRTPVRSNAQPSQGSVVEQDEGSSRFWNCSNNNNRFTLL