Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012800.t1 | KEH32763.1 | 98.6 | 563 | 8 | 0 | 1 | 563 | 17 | 579 | 0.00E+00 | 1122.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012800.t1 | Q9M9Y8 | 31.3 | 550 | 324 | 17 | 30 | 559 | 66 | 581 | 9.8e-58 | 226.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012800.t1 | A0A072UUM0 | 98.6 | 563 | 8 | 0 | 1 | 563 | 17 | 579 | 0.0e+00 | 1122.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene012800 | MS.gene39233 | PPI |
MS.gene034659 | MS.gene012800 | PPI |
MS.gene46506 | MS.gene012800 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012800.t1 | MTR_4g134780 | 98.934 | 563 | 6 | 0 | 1 | 563 | 17 | 579 | 0.0 | 1152 |
MS.gene012800.t1 | MTR_1g054965 | 31.504 | 565 | 320 | 21 | 17 | 550 | 42 | 570 | 8.28e-63 | 217 |
MS.gene012800.t1 | MTR_1g054965 | 33.803 | 355 | 216 | 12 | 203 | 550 | 72 | 414 | 9.49e-51 | 181 |
MS.gene012800.t1 | MTR_1g054965 | 29.681 | 502 | 286 | 21 | 17 | 488 | 42 | 506 | 2.17e-42 | 159 |
MS.gene012800.t1 | MTR_1g054965 | 31.164 | 292 | 182 | 12 | 203 | 488 | 30 | 308 | 1.17e-30 | 122 |
MS.gene012800.t1 | MTR_8g077580 | 23.966 | 580 | 334 | 25 | 24 | 534 | 4 | 545 | 3.60e-14 | 75.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012800.t1 | AT1G57770 | 80.952 | 525 | 100 | 0 | 39 | 563 | 50 | 574 | 0.0 | 901 |
MS.gene012800.t1 | AT1G06820 | 31.758 | 529 | 310 | 16 | 39 | 550 | 75 | 569 | 1.55e-65 | 224 |
MS.gene012800.t1 | AT1G06820 | 31.758 | 529 | 310 | 16 | 39 | 550 | 75 | 569 | 2.27e-65 | 224 |
MS.gene012800.t1 | AT1G06820 | 34.181 | 354 | 216 | 9 | 203 | 550 | 108 | 450 | 3.45e-53 | 188 |
MS.gene012800.t1 | AT1G06820 | 29.501 | 461 | 276 | 15 | 39 | 483 | 75 | 502 | 1.37e-44 | 166 |
MS.gene012800.t1 | AT5G49555 | 22.460 | 561 | 352 | 23 | 31 | 534 | 3 | 537 | 8.10e-14 | 74.7 |
Find 146 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGCAAAGAGTCAAGTATT+TGG | 0.236602 | 8.1:+137238 | None:intergenic |
ATTGCTCACAACAGCCTTCT+TGG | 0.241353 | 8.1:+136488 | None:intergenic |
TGCTCAAGTTCTTGATGCTT+TGG | 0.242947 | 8.1:-137586 | MS.gene012800:CDS |
TCAAGAATGGCAGAAGCTTT+TGG | 0.272982 | 8.1:-137436 | MS.gene012800:CDS |
TTACTTTCTTTCTTGCTTGC+TGG | 0.273947 | 8.1:-137183 | MS.gene012800:CDS |
TGCCATTCTTGAACAGCTTC+AGG | 0.275584 | 8.1:+137447 | None:intergenic |
GAGTCAAGTATTTGGGAAAA+AGG | 0.286218 | 8.1:+137246 | None:intergenic |
GCTCAAGTTCTTGATGCTTT+GGG | 0.288521 | 8.1:-137585 | MS.gene012800:CDS |
TTCCAAAGTCTTACTCAAAT+AGG | 0.312564 | 8.1:-136422 | MS.gene012800:CDS |
ATCATATAGTTGTAAATGAT+TGG | 0.312848 | 8.1:-136235 | MS.gene012800:CDS |
AACTCAAATGGTTCAGTTCC+TGG | 0.320765 | 8.1:+136107 | None:intergenic |
ATCTTTCATGCATCTCCATT+TGG | 0.323021 | 8.1:-136376 | MS.gene012800:CDS |
GTCATAGTAATGGGAGGATT+AGG | 0.323662 | 8.1:-137866 | MS.gene012800:CDS |
CTGAGGACCCATTTGGAAAA+AGG | 0.326579 | 8.1:+137299 | None:intergenic |
GCTGGTACAGATACCTTTCC+TGG | 0.338263 | 8.1:-135800 | MS.gene012800:CDS |
TTGCAAAGAGTCAAGTATTT+GGG | 0.338675 | 8.1:+137239 | None:intergenic |
AGCTTTAAGATTTCTGTATT+CGG | 0.338946 | 8.1:+136058 | None:intergenic |
CTATCTGTTCGAGGAGATTT+CGG | 0.340613 | 8.1:-137369 | MS.gene012800:CDS |
GTGTTACATGCTTATCTTCC+AGG | 0.349073 | 8.1:-136125 | MS.gene012800:CDS |
CAACAATAAAGGTGTGGAAT+TGG | 0.355420 | 8.1:+135767 | None:intergenic |
TCTTTCATGCATCTCCATTT+GGG | 0.358441 | 8.1:-136375 | MS.gene012800:CDS |
TCCCAGCTGCTTGATGCAAT+TGG | 0.358531 | 8.1:-135653 | MS.gene012800:CDS |
CCTGCGCTACTTATGATTCA+TGG | 0.371994 | 8.1:-137551 | MS.gene012800:CDS |
GATTAGGGAAGGTGGGGTTG+TGG | 0.374327 | 8.1:-137850 | MS.gene012800:CDS |
TCATAGTAATGGGAGGATTA+GGG | 0.375844 | 8.1:-137865 | MS.gene012800:CDS |
GAAACAGATGTAATTGTGAT+TGG | 0.389065 | 8.1:-137795 | MS.gene012800:CDS |
ATCCTATTTGAGTAAGACTT+TGG | 0.389095 | 8.1:+136420 | None:intergenic |
TGGAGTCTCCACAACAATAA+AGG | 0.393345 | 8.1:+135756 | None:intergenic |
AGAATCCTTTCATACGCAAT+TGG | 0.397759 | 8.1:-137212 | MS.gene012800:CDS |
ACTCCTAATCTGGCACCTAC+TGG | 0.397996 | 8.1:-136155 | MS.gene012800:CDS |
TTCCAATTGCATCAAGCAGC+TGG | 0.400845 | 8.1:+135651 | None:intergenic |
CATTTCTCCCTGCTGAATCC+TGG | 0.401568 | 8.1:+135905 | None:intergenic |
TCATATAGTTGTAAATGATT+GGG | 0.417919 | 8.1:-136234 | MS.gene012800:CDS |
TAGTGTACTTACTCCTAATC+TGG | 0.419014 | 8.1:-136165 | MS.gene012800:CDS |
AACTGAACCATTTGAGTTGT+GGG | 0.419173 | 8.1:-136102 | MS.gene012800:CDS |
CAGGGTATACGCAGCGATCT+AGG | 0.420176 | 8.1:-136263 | MS.gene012800:CDS |
TCCGGTCCATCATTATTCTC+TGG | 0.421373 | 8.1:-137642 | MS.gene012800:CDS |
ATTGTGATTGGGAGTGGTAT+TGG | 0.424946 | 8.1:-137783 | MS.gene012800:CDS |
GTTGTAAATGATTGGGAAAG+AGG | 0.432129 | 8.1:-136227 | MS.gene012800:CDS |
GAGCAGCCTGAGGACCCATT+TGG | 0.432543 | 8.1:+137292 | None:intergenic |
TCACACATCAAAGGTTTCTT+CGG | 0.434054 | 8.1:-135856 | MS.gene012800:CDS |
GTACGAGGACTAGAGAAGTT+TGG | 0.436491 | 8.1:-136677 | MS.gene012800:CDS |
ATCATCATAGTCATAGTAAT+GGG | 0.437707 | 8.1:-137875 | MS.gene012800:CDS |
CGTGACAAGAAATCAGCTTC+AGG | 0.438051 | 8.1:+137516 | None:intergenic |
AAATCTCCTCGAACAGATAG+AGG | 0.446661 | 8.1:+137372 | None:intergenic |
ACTGCAGGGACGCCAATGCC+AGG | 0.458440 | 8.1:+135728 | None:intergenic |
AAATGTGAAGTGAAGTTAGT+TGG | 0.458953 | 8.1:-135887 | MS.gene012800:CDS |
ACTTTGGAACAACTTCTTGA+GGG | 0.464503 | 8.1:+136436 | None:intergenic |
GCACCACTGGCAGCAACTGC+AGG | 0.466053 | 8.1:+135713 | None:intergenic |
AATGGGAGGATTAGGGAAGG+TGG | 0.469524 | 8.1:-137858 | MS.gene012800:CDS |
TCTGTACCAGCTTGTATAGC+TGG | 0.473355 | 8.1:+135812 | None:intergenic |
CAGTGGGACCAGGATTCAGC+AGG | 0.478022 | 8.1:-135913 | MS.gene012800:CDS |
AGGTTTACATGTTTGCAGAA+TGG | 0.481167 | 8.1:-136763 | MS.gene012800:CDS |
AAAGGCTATAAGTTTGATTC+CGG | 0.484501 | 8.1:-137660 | MS.gene012800:CDS |
ATTCCACACCTTTATTGTTG+TGG | 0.492890 | 8.1:-135764 | MS.gene012800:CDS |
AAACAGATGTAATTGTGATT+GGG | 0.492966 | 8.1:-137794 | MS.gene012800:CDS |
CATCATCATAGTCATAGTAA+TGG | 0.495952 | 8.1:-137876 | MS.gene012800:CDS |
GTGGAGAGAGCAGTGGGACC+AGG | 0.499060 | 8.1:-135923 | MS.gene012800:CDS |
ATGGGAGGATTAGGGAAGGT+GGG | 0.499467 | 8.1:-137857 | MS.gene012800:CDS |
CAGCACCTCCAGCATGGTCG+TGG | 0.499748 | 8.1:+137700 | None:intergenic |
CGGAGGAACAGAGGAACATA+TGG | 0.499814 | 8.1:-135836 | MS.gene012800:CDS |
AGTCCTTCCCACAACTCAAA+TGG | 0.501774 | 8.1:+136095 | None:intergenic |
CAATACCTGCAGCTCCATCA+AGG | 0.503593 | 8.1:+136711 | None:intergenic |
TCCCTTGTCTACAGCTGCAA+TGG | 0.505505 | 8.1:-137403 | MS.gene012800:CDS |
AGAAATCAGCTTCAGGTACA+TGG | 0.506854 | 8.1:+137523 | None:intergenic |
CTCCTAATCTGGCACCTACT+GGG | 0.508705 | 8.1:-136154 | MS.gene012800:CDS |
GCTTCTCAGCTTCACTCCAA+TGG | 0.509152 | 8.1:+136598 | None:intergenic |
CCTCAGCATCAAATCCCAAA+TGG | 0.511011 | 8.1:+136361 | None:intergenic |
CCATGAATCATAAGTAGCGC+AGG | 0.513899 | 8.1:+137551 | None:intergenic |
GACGCCAATGCCAGGAAAAG+TGG | 0.514468 | 8.1:+135736 | None:intergenic |
TGGGAGGATTAGGGAAGGTG+GGG | 0.517140 | 8.1:-137856 | MS.gene012800:CDS |
TAGTATATTGTCTGCAGAGA+TGG | 0.518916 | 8.1:-137148 | MS.gene012800:intron |
TTCCCAGTAGGTGCCAGATT+AGG | 0.527245 | 8.1:+136152 | None:intergenic |
ACCAGAGAATAATGATGGAC+CGG | 0.531175 | 8.1:+137641 | None:intergenic |
GAACTGAACCATTTGAGTTG+TGG | 0.531241 | 8.1:-136103 | MS.gene012800:CDS |
ATTAGCTACAATTGCACCAC+TGG | 0.535074 | 8.1:+135700 | None:intergenic |
GACTTTGGAACAACTTCTTG+AGG | 0.536940 | 8.1:+136435 | None:intergenic |
GTCCTGAAGCTGTTCAAGAA+TGG | 0.537122 | 8.1:-137449 | MS.gene012800:CDS |
TCAATCCAATTGCGTATGAA+AGG | 0.537955 | 8.1:+137207 | None:intergenic |
TGCAAACCAGAGAATAATGA+TGG | 0.543994 | 8.1:+137636 | None:intergenic |
TTCGAAAGCCACGACCATGC+TGG | 0.544052 | 8.1:-137708 | MS.gene012800:CDS |
TTCTCTGGTTTGCAGTCAAG+AGG | 0.544317 | 8.1:-137627 | MS.gene012800:CDS |
AAGGACCTTCACAACTATGC+AGG | 0.545742 | 8.1:-137471 | MS.gene012800:CDS |
CGCTACTTATGATTCATGGA+TGG | 0.556127 | 8.1:-137547 | MS.gene012800:CDS |
GTCCCTGCAGTTGCTGCCAG+TGG | 0.557851 | 8.1:-135716 | MS.gene012800:CDS |
AGCCATTGCAGCTGTAGACA+AGG | 0.561564 | 8.1:+137401 | None:intergenic |
AATACCTGCAGCTCCATCAA+GGG | 0.564396 | 8.1:+136712 | None:intergenic |
TCCAATTGCATCAAGCAGCT+GGG | 0.566641 | 8.1:+135652 | None:intergenic |
GTGATTGGGAGTGGTATTGG+TGG | 0.570399 | 8.1:-137780 | MS.gene012800:CDS |
GCATCAAGAACTTGAGCAAG+AGG | 0.572179 | 8.1:+137591 | None:intergenic |
GTTGAAAATGACAGAGCCAT+TGG | 0.574831 | 8.1:-136614 | MS.gene012800:CDS |
CCATTTGGGATTTGATGCTG+AGG | 0.576837 | 8.1:-136361 | MS.gene012800:intron |
TTTGCAGTCAAGAGGTCCAC+AGG | 0.577098 | 8.1:-137619 | MS.gene012800:CDS |
CACATCAAAGGTTTCTTCGG+AGG | 0.578196 | 8.1:-135853 | MS.gene012800:CDS |
CAGGACCTGCATAGTTGTGA+AGG | 0.579792 | 8.1:+137466 | None:intergenic |
AGAGCAGTGGAGAGAGCAGT+GGG | 0.579813 | 8.1:-135929 | MS.gene012800:CDS |
GAAGTCCACTCACACATCAA+AGG | 0.579934 | 8.1:-135865 | MS.gene012800:CDS |
GCAGTTCGTACATGCCAAGA+AGG | 0.580617 | 8.1:-136502 | MS.gene012800:intron |
GAGAGCAGTGGAGAGAGCAG+TGG | 0.581460 | 8.1:-135930 | MS.gene012800:CDS |
ATCATAAGTAGCGCAGGGGA+CGG | 0.583077 | 8.1:+137557 | None:intergenic |
ACTGAGTTGTGCAGCACTGT+TGG | 0.584888 | 8.1:-137757 | MS.gene012800:CDS |
GCCATTGCAGCTGTAGACAA+GGG | 0.590322 | 8.1:+137402 | None:intergenic |
CGAGGACTAGAGAAGTTTGG+TGG | 0.591605 | 8.1:-136674 | MS.gene012800:CDS |
CAAACAACAAATAGATAATG+TGG | 0.592493 | 8.1:-135952 | MS.gene012800:intron |
GATGTAATTGTGATTGGGAG+TGG | 0.593011 | 8.1:-137789 | MS.gene012800:CDS |
AATCTCCTCGAACAGATAGA+GGG | 0.593766 | 8.1:+137373 | None:intergenic |
AGATTAGGAGTAAGTACACT+AGG | 0.595451 | 8.1:+136167 | None:intergenic |
GCTGATTTCTTGTCACGCAT+AGG | 0.597690 | 8.1:-137510 | MS.gene012800:CDS |
CACCACTGGCAGCAACTGCA+GGG | 0.605933 | 8.1:+135714 | None:intergenic |
TGGAGTTGAATGTCCAGGAA+AGG | 0.606615 | 8.1:+135787 | None:intergenic |
CATGAATCATAAGTAGCGCA+GGG | 0.607675 | 8.1:+137552 | None:intergenic |
GAACCATTTGAGTTGTGGGA+AGG | 0.609081 | 8.1:-136098 | MS.gene012800:CDS |
TTTGCAGAATGGTACAAACC+AGG | 0.612324 | 8.1:-136752 | MS.gene012800:CDS |
TATGGACCAGCTATACAAGC+TGG | 0.613740 | 8.1:-135818 | MS.gene012800:CDS |
TTGCAGAATGGTACAAACCA+GGG | 0.620272 | 8.1:-136751 | MS.gene012800:CDS |
ATAGATAATGTGGAGAGCAG+TGG | 0.622582 | 8.1:-135942 | MS.gene012800:intron |
GGAATTGGAGTTGAATGTCC+AGG | 0.624562 | 8.1:+135782 | None:intergenic |
AGGTTTCTTCGGAGGAACAG+AGG | 0.626999 | 8.1:-135845 | MS.gene012800:CDS |
GACTAGAGAAGTTTGGTGGG+CGG | 0.629357 | 8.1:-136670 | MS.gene012800:CDS |
ATTGTTGATGCTCTTGTACG+AGG | 0.629566 | 8.1:-136692 | MS.gene012800:CDS |
CATCAAGAACTTGAGCAAGA+GGG | 0.633604 | 8.1:+137592 | None:intergenic |
ATTGGAGTGAAGCTGAGAAG+CGG | 0.638801 | 8.1:-136596 | MS.gene012800:CDS |
AATGAGCAGCACCTCCAGCA+TGG | 0.642493 | 8.1:+137694 | None:intergenic |
ATACCTGCAGCTCCATCAAG+GGG | 0.643456 | 8.1:+136713 | None:intergenic |
TCTTAAAGCTCAAAGATCAG+AGG | 0.643901 | 8.1:-136045 | MS.gene012800:intron |
TGCAGAATGGTACAAACCAG+GGG | 0.644445 | 8.1:-136750 | MS.gene012800:CDS |
ATCTCCTCGAACAGATAGAG+GGG | 0.646167 | 8.1:+137374 | None:intergenic |
ATCATAGTCATAGTAATGGG+AGG | 0.651087 | 8.1:-137872 | MS.gene012800:CDS |
AAAAGGTGAGAGAAGTTGTG+TGG | 0.652152 | 8.1:+137263 | None:intergenic |
TGTAACACATGTTTCCCAGT+AGG | 0.652977 | 8.1:+136140 | None:intergenic |
TGAGCAAGAGGGTTAGCCTG+TGG | 0.654171 | 8.1:+137603 | None:intergenic |
GATTTCTCTTCAAAGTCACG+TGG | 0.656256 | 8.1:-136648 | MS.gene012800:CDS |
GAGGACTAGAGAAGTTTGGT+GGG | 0.661720 | 8.1:-136673 | MS.gene012800:CDS |
TCTCCACAACAATAAAGGTG+TGG | 0.665845 | 8.1:+135761 | None:intergenic |
AGAAACCTTTGATGTGTGAG+TGG | 0.673422 | 8.1:+135860 | None:intergenic |
AGGTGCATATCTAGCAGCAG+CGG | 0.676346 | 8.1:+137335 | None:intergenic |
GAAAGCCACGACCATGCTGG+AGG | 0.682926 | 8.1:-137705 | MS.gene012800:CDS |
AGTGGGACCAGGATTCAGCA+GGG | 0.693423 | 8.1:-135912 | MS.gene012800:CDS |
TGTGAGCAATGCATCAATGT+GGG | 0.699079 | 8.1:-136475 | MS.gene012800:CDS |
TTGTGAGCAATGCATCAATG+TGG | 0.700183 | 8.1:-136476 | MS.gene012800:CDS |
TCTCCTCGAACAGATAGAGG+GGG | 0.703760 | 8.1:+137375 | None:intergenic |
AGTAATGGGAGGATTAGGGA+AGG | 0.709466 | 8.1:-137861 | MS.gene012800:CDS |
GTGGAACGAAGAGCAGCCTG+AGG | 0.714071 | 8.1:+137282 | None:intergenic |
ATGAATCATAAGTAGCGCAG+GGG | 0.721253 | 8.1:+137553 | None:intergenic |
GCAGAATGGTACAAACCAGG+GGG | 0.746992 | 8.1:-136749 | MS.gene012800:CDS |
TACCTGCAGCTCCATCAAGG+GGG | 0.749948 | 8.1:+136714 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCAAAATTAATATACTTACT+TGG | + | chr8.1:136991-137010 | None:intergenic | 15.0% |
!!! | TGATTTTTAAGAAATGAAAT+TGG | + | chr8.1:136662-136681 | None:intergenic | 15.0% |
!! | ATAACACATAAATCTCTAAA+GGG | - | chr8.1:136579-136598 | MS.gene012800:intron | 20.0% |
!! | ATCATATAGTTGTAAATGAT+TGG | - | chr8.1:137326-137345 | MS.gene012800:CDS | 20.0% |
!! | TCATATAGTTGTAAATGATT+GGG | - | chr8.1:137327-137346 | MS.gene012800:CDS | 20.0% |
! | AAACAGATGTAATTGTGATT+GGG | - | chr8.1:135767-135786 | MS.gene012800:CDS | 25.0% |
! | ATCATCATAGTCATAGTAAT+GGG | - | chr8.1:135686-135705 | MS.gene012800:CDS | 25.0% |
! | CAAACAACAAATAGATAATG+TGG | - | chr8.1:137609-137628 | MS.gene012800:CDS | 25.0% |
! | CATAACACATAAATCTCTAA+AGG | - | chr8.1:136578-136597 | MS.gene012800:intron | 25.0% |
!! | TTCAATACCTTTTTCCAAAT+GGG | - | chr8.1:136255-136274 | MS.gene012800:CDS | 25.0% |
!! | TTTCAATACCTTTTTCCAAA+TGG | - | chr8.1:136254-136273 | MS.gene012800:CDS | 25.0% |
!!! | AAAAAGGTATTGAAAAGAGA+AGG | + | chr8.1:136249-136268 | None:intergenic | 25.0% |
!!! | AGCTTTAAGATTTCTGTATT+CGG | + | chr8.1:137506-137525 | None:intergenic | 25.0% |
AAAGGCTATAAGTTTGATTC+CGG | - | chr8.1:135901-135920 | MS.gene012800:CDS | 30.0% | |
AAATGTGAAGTGAAGTTAGT+TGG | - | chr8.1:137674-137693 | MS.gene012800:CDS | 30.0% | |
AGGATAGAAACTAGTTATTG+TGG | + | chr8.1:136520-136539 | None:intergenic | 30.0% | |
ATCCTATTTGAGTAAGACTT+TGG | + | chr8.1:137144-137163 | None:intergenic | 30.0% | |
CATCATCATAGTCATAGTAA+TGG | - | chr8.1:135685-135704 | MS.gene012800:CDS | 30.0% | |
GAAACAGATGTAATTGTGAT+TGG | - | chr8.1:135766-135785 | MS.gene012800:CDS | 30.0% | |
TTCCAAAGTCTTACTCAAAT+AGG | - | chr8.1:137139-137158 | MS.gene012800:intron | 30.0% | |
TTGCAAAGAGTCAAGTATTT+GGG | + | chr8.1:136325-136344 | None:intergenic | 30.0% | |
ACCTAAAAGCAGCAGTTAAA+TGG | - | chr8.1:136681-136700 | MS.gene012800:CDS | 35.0% | |
ACTGTCTCTAAGTAAACAAC+AGG | + | chr8.1:136625-136644 | None:intergenic | 35.0% | |
AGAATCCTTTCATACGCAAT+TGG | - | chr8.1:136349-136368 | MS.gene012800:intron | 35.0% | |
AGATTAGGAGTAAGTACACT+AGG | + | chr8.1:137397-137416 | None:intergenic | 35.0% | |
AGGTTTACATGTTTGCAGAA+TGG | - | chr8.1:136798-136817 | MS.gene012800:intron | 35.0% | |
ATCTTTCATGCATCTCCATT+TGG | - | chr8.1:137185-137204 | MS.gene012800:CDS | 35.0% | |
ATTCCACACCTTTATTGTTG+TGG | - | chr8.1:137797-137816 | MS.gene012800:CDS | 35.0% | |
GAAAACTAACGAAATAGTGC+TGG | - | chr8.1:136707-136726 | MS.gene012800:CDS | 35.0% | |
GAATACTTCAAACAGATGCA+TGG | + | chr8.1:137265-137284 | None:intergenic | 35.0% | |
GAGTCAAGTATTTGGGAAAA+AGG | + | chr8.1:136318-136337 | None:intergenic | 35.0% | |
GTTGCAAAGAGTCAAGTATT+TGG | + | chr8.1:136326-136345 | None:intergenic | 35.0% | |
GTTGTAAATGATTGGGAAAG+AGG | - | chr8.1:137334-137353 | MS.gene012800:CDS | 35.0% | |
TAGTATATTGTCTGCAGAGA+TGG | - | chr8.1:136413-136432 | MS.gene012800:CDS | 35.0% | |
TAGTGTACTTACTCCTAATC+TGG | - | chr8.1:137396-137415 | MS.gene012800:CDS | 35.0% | |
TCAATCCAATTGCGTATGAA+AGG | + | chr8.1:136357-136376 | None:intergenic | 35.0% | |
TCACACATCAAAGGTTTCTT+CGG | - | chr8.1:137705-137724 | MS.gene012800:CDS | 35.0% | |
TCTGCACAAAAAAATGAGAG+AGG | + | chr8.1:136540-136559 | None:intergenic | 35.0% | |
TCTTAAAGCTCAAAGATCAG+AGG | - | chr8.1:137516-137535 | MS.gene012800:CDS | 35.0% | |
TCTTTCATGCATCTCCATTT+GGG | - | chr8.1:137186-137205 | MS.gene012800:CDS | 35.0% | |
TGCAAACCAGAGAATAATGA+TGG | + | chr8.1:135928-135947 | None:intergenic | 35.0% | |
TTACTTTCTTTCTTGCTTGC+TGG | - | chr8.1:136378-136397 | MS.gene012800:CDS | 35.0% | |
! | AGGTCCTACTGAGTTTTTAA+AGG | - | chr8.1:136071-136090 | MS.gene012800:CDS | 35.0% |
! | AGGTCCTTTAAAAACTCAGT+AGG | + | chr8.1:136078-136097 | None:intergenic | 35.0% |
! | ATCATAGTCATAGTAATGGG+AGG | - | chr8.1:135689-135708 | MS.gene012800:CDS | 35.0% |
! | CAACAATAAAGGTGTGGAAT+TGG | + | chr8.1:137797-137816 | None:intergenic | 35.0% |
! | GCTCATTCTTTTGATGTCAA+AGG | - | chr8.1:135883-135902 | MS.gene012800:CDS | 35.0% |
! | TCATAGTAATGGGAGGATTA+GGG | - | chr8.1:135696-135715 | MS.gene012800:CDS | 35.0% |
!! | AACTGAACCATTTGAGTTGT+GGG | - | chr8.1:137459-137478 | MS.gene012800:CDS | 35.0% |
!! | ACTTTGGAACAACTTCTTGA+GGG | + | chr8.1:137128-137147 | None:intergenic | 35.0% |
!!! | TCCATTTAACTGCTGCTTTT+AGG | + | chr8.1:136685-136704 | None:intergenic | 35.0% |
AAAAGGTGAGAGAAGTTGTG+TGG | + | chr8.1:136301-136320 | None:intergenic | 40.0% | |
AAACATGTAAACCTGAGGGA+AGG | + | chr8.1:136792-136811 | None:intergenic | 40.0% | |
AAATCTCCTCGAACAGATAG+AGG | + | chr8.1:136192-136211 | None:intergenic | 40.0% | |
AACATGTAAACCTGAGGGAA+GGG | + | chr8.1:136791-136810 | None:intergenic | 40.0% | |
AACTCAAATGGTTCAGTTCC+TGG | + | chr8.1:137457-137476 | None:intergenic | 40.0% | |
AATCTCCTCGAACAGATAGA+GGG | + | chr8.1:136191-136210 | None:intergenic | 40.0% | |
AGAAACCTTTGATGTGTGAG+TGG | + | chr8.1:137704-137723 | None:intergenic | 40.0% | |
AGAAATCAGCTTCAGGTACA+TGG | + | chr8.1:136041-136060 | None:intergenic | 40.0% | |
ATAGATAATGTGGAGAGCAG+TGG | - | chr8.1:137619-137638 | MS.gene012800:CDS | 40.0% | |
ATGAATCATAAGTAGCGCAG+GGG | + | chr8.1:136011-136030 | None:intergenic | 40.0% | |
ATTAGCTACAATTGCACCAC+TGG | + | chr8.1:137864-137883 | None:intergenic | 40.0% | |
ATTGTGATTGGGAGTGGTAT+TGG | - | chr8.1:135778-135797 | MS.gene012800:CDS | 40.0% | |
ATTGTTGATGCTCTTGTACG+AGG | - | chr8.1:136869-136888 | MS.gene012800:intron | 40.0% | |
CATCAAGAACTTGAGCAAGA+GGG | + | chr8.1:135972-135991 | None:intergenic | 40.0% | |
CATGAATCATAAGTAGCGCA+GGG | + | chr8.1:136012-136031 | None:intergenic | 40.0% | |
CGCTACTTATGATTCATGGA+TGG | - | chr8.1:136014-136033 | MS.gene012800:intron | 40.0% | |
CTATCTGTTCGAGGAGATTT+CGG | - | chr8.1:136192-136211 | MS.gene012800:CDS | 40.0% | |
CTGCAAACATGTAAACCTGA+GGG | + | chr8.1:136796-136815 | None:intergenic | 40.0% | |
GATGTAATTGTGATTGGGAG+TGG | - | chr8.1:135772-135791 | MS.gene012800:CDS | 40.0% | |
GATTTCTCTTCAAAGTCACG+TGG | - | chr8.1:136913-136932 | MS.gene012800:intron | 40.0% | |
GCTCAAGTTCTTGATGCTTT+GGG | - | chr8.1:135976-135995 | MS.gene012800:intron | 40.0% | |
GTGTTACATGCTTATCTTCC+AGG | - | chr8.1:137436-137455 | MS.gene012800:CDS | 40.0% | |
GTTGAAAATGACAGAGCCAT+TGG | - | chr8.1:136947-136966 | MS.gene012800:intron | 40.0% | |
TATTCAACATCGAGTGAGCA+GGG | - | chr8.1:137280-137299 | MS.gene012800:CDS | 40.0% | |
TCTCCACAACAATAAAGGTG+TGG | + | chr8.1:137803-137822 | None:intergenic | 40.0% | |
TCTGCAAACATGTAAACCTG+AGG | + | chr8.1:136797-136816 | None:intergenic | 40.0% | |
TGCTCAAGTTCTTGATGCTT+TGG | - | chr8.1:135975-135994 | MS.gene012800:intron | 40.0% | |
TGGAGTCTCCACAACAATAA+AGG | + | chr8.1:137808-137827 | None:intergenic | 40.0% | |
TGTAACACATGTTTCCCAGT+AGG | + | chr8.1:137424-137443 | None:intergenic | 40.0% | |
TGTGAGCAATGCATCAATGT+GGG | - | chr8.1:137086-137105 | MS.gene012800:intron | 40.0% | |
TTGCAGAATGGTACAAACCA+GGG | - | chr8.1:136810-136829 | MS.gene012800:intron | 40.0% | |
TTGTGAGCAATGCATCAATG+TGG | - | chr8.1:137085-137104 | MS.gene012800:intron | 40.0% | |
TTTGCAGAATGGTACAAACC+AGG | - | chr8.1:136809-136828 | MS.gene012800:intron | 40.0% | |
! | AATGATTGCACGTTGATGAG+TGG | + | chr8.1:136471-136490 | None:intergenic | 40.0% |
! | GTCATAGTAATGGGAGGATT+AGG | - | chr8.1:135695-135714 | MS.gene012800:CDS | 40.0% |
! | TCAAGAATGGCAGAAGCTTT+TGG | - | chr8.1:136125-136144 | MS.gene012800:CDS | 40.0% |
!! | ACCAGAGAATAATGATGGAC+CGG | + | chr8.1:135923-135942 | None:intergenic | 40.0% |
!! | GAACTGAACCATTTGAGTTG+TGG | - | chr8.1:137458-137477 | MS.gene012800:CDS | 40.0% |
!! | GACTTTGGAACAACTTCTTG+AGG | + | chr8.1:137129-137148 | None:intergenic | 40.0% |
!! | TGATGAGTGGTAATGGCAAT+TGG | + | chr8.1:136458-136477 | None:intergenic | 40.0% |
AAGGACCTTCACAACTATGC+AGG | - | chr8.1:136090-136109 | MS.gene012800:CDS | 45.0% | |
AATACCTGCAGCTCCATCAA+GGG | + | chr8.1:136852-136871 | None:intergenic | 45.0% | |
AGTCCTTCCCACAACTCAAA+TGG | + | chr8.1:137469-137488 | None:intergenic | 45.0% | |
ATCTCCTCGAACAGATAGAG+GGG | + | chr8.1:136190-136209 | None:intergenic | 45.0% | |
ATTGCTCACAACAGCCTTCT+TGG | + | chr8.1:137076-137095 | None:intergenic | 45.0% | |
ATTGGAGTGAAGCTGAGAAG+CGG | - | chr8.1:136965-136984 | MS.gene012800:intron | 45.0% | |
CACATCAAAGGTTTCTTCGG+AGG | - | chr8.1:137708-137727 | MS.gene012800:CDS | 45.0% | |
CCATGAATCATAAGTAGCGC+AGG | + | chr8.1:136013-136032 | None:intergenic | 45.0% | |
CCTCAGCATCAAATCCCAAA+TGG | + | chr8.1:137203-137222 | None:intergenic | 45.0% | |
CCTGCGCTACTTATGATTCA+TGG | - | chr8.1:136010-136029 | MS.gene012800:intron | 45.0% | |
CGTGACAAGAAATCAGCTTC+AGG | + | chr8.1:136048-136067 | None:intergenic | 45.0% | |
CTGAGGACCCATTTGGAAAA+AGG | + | chr8.1:136265-136284 | None:intergenic | 45.0% | |
GAAGTCCACTCACACATCAA+AGG | - | chr8.1:137696-137715 | MS.gene012800:CDS | 45.0% | |
GAGGACTAGAGAAGTTTGGT+GGG | - | chr8.1:136888-136907 | MS.gene012800:intron | 45.0% | |
GCATCAAGAACTTGAGCAAG+AGG | + | chr8.1:135973-135992 | None:intergenic | 45.0% | |
GGAATTGGAGTTGAATGTCC+AGG | + | chr8.1:137782-137801 | None:intergenic | 45.0% | |
GTACGAGGACTAGAGAAGTT+TGG | - | chr8.1:136884-136903 | MS.gene012800:intron | 45.0% | |
GTATTCAACATCGAGTGAGC+AGG | - | chr8.1:137279-137298 | MS.gene012800:CDS | 45.0% | |
GTCCTGAAGCTGTTCAAGAA+TGG | - | chr8.1:136112-136131 | MS.gene012800:CDS | 45.0% | |
TATGGACCAGCTATACAAGC+TGG | - | chr8.1:137743-137762 | MS.gene012800:CDS | 45.0% | |
TCCAATTGCATCAAGCAGCT+GGG | + | chr8.1:137912-137931 | None:intergenic | 45.0% | |
TCCGGTCCATCATTATTCTC+TGG | - | chr8.1:135919-135938 | MS.gene012800:CDS | 45.0% | |
TCTGTACCAGCTTGTATAGC+TGG | + | chr8.1:137752-137771 | None:intergenic | 45.0% | |
TGCAGAATGGTACAAACCAG+GGG | - | chr8.1:136811-136830 | MS.gene012800:intron | 45.0% | |
TGCCATTCTTGAACAGCTTC+AGG | + | chr8.1:136117-136136 | None:intergenic | 45.0% | |
TGGAGTTGAATGTCCAGGAA+AGG | + | chr8.1:137777-137796 | None:intergenic | 45.0% | |
TTCCAATTGCATCAAGCAGC+TGG | + | chr8.1:137913-137932 | None:intergenic | 45.0% | |
! | AGTAATGGGAGGATTAGGGA+AGG | - | chr8.1:135700-135719 | MS.gene012800:CDS | 45.0% |
! | CCATTTGGGATTTGATGCTG+AGG | - | chr8.1:137200-137219 | MS.gene012800:CDS | 45.0% |
! | CTTTTTCCAAATGGGTCCTC+AGG | - | chr8.1:136263-136282 | MS.gene012800:CDS | 45.0% |
! | GCTGATTTCTTGTCACGCAT+AGG | - | chr8.1:136051-136070 | MS.gene012800:CDS | 45.0% |
! | TGCACGTTGATGAGTGGTAA+TGG | + | chr8.1:136465-136484 | None:intergenic | 45.0% |
! | TTCTCTGGTTTGCAGTCAAG+AGG | - | chr8.1:135934-135953 | MS.gene012800:CDS | 45.0% |
! | TTGATGCTGAGGTGAGGTTT+TGG | - | chr8.1:137211-137230 | MS.gene012800:CDS | 45.0% |
!! | GAACCATTTGAGTTGTGGGA+AGG | - | chr8.1:137463-137482 | MS.gene012800:CDS | 45.0% |
AATGGGAGGATTAGGGAAGG+TGG | - | chr8.1:135703-135722 | MS.gene012800:CDS | 50.0% | |
ACTCCTAATCTGGCACCTAC+TGG | - | chr8.1:137406-137425 | MS.gene012800:CDS | 50.0% | |
ACTGAGTTGTGCAGCACTGT+TGG | - | chr8.1:135804-135823 | MS.gene012800:CDS | 50.0% | |
AGCCATTGCAGCTGTAGACA+AGG | + | chr8.1:136163-136182 | None:intergenic | 50.0% | |
AGGTGCATATCTAGCAGCAG+CGG | + | chr8.1:136229-136248 | None:intergenic | 50.0% | |
AGGTTTCTTCGGAGGAACAG+AGG | - | chr8.1:137716-137735 | MS.gene012800:CDS | 50.0% | |
ATACCTGCAGCTCCATCAAG+GGG | + | chr8.1:136851-136870 | None:intergenic | 50.0% | |
ATCATAAGTAGCGCAGGGGA+CGG | + | chr8.1:136007-136026 | None:intergenic | 50.0% | |
ATGGGAGGATTAGGGAAGGT+GGG | - | chr8.1:135704-135723 | MS.gene012800:CDS | 50.0% | |
CAATACCTGCAGCTCCATCA+AGG | + | chr8.1:136853-136872 | None:intergenic | 50.0% | |
CAGGACCTGCATAGTTGTGA+AGG | + | chr8.1:136098-136117 | None:intergenic | 50.0% | |
CATTTCTCCCTGCTGAATCC+TGG | + | chr8.1:137659-137678 | None:intergenic | 50.0% | |
CGAGGACTAGAGAAGTTTGG+TGG | - | chr8.1:136887-136906 | MS.gene012800:intron | 50.0% | |
CGGAGGAACAGAGGAACATA+TGG | - | chr8.1:137725-137744 | MS.gene012800:CDS | 50.0% | |
CTCCTAATCTGGCACCTACT+GGG | - | chr8.1:137407-137426 | MS.gene012800:CDS | 50.0% | |
GCAGAATGGTACAAACCAGG+GGG | - | chr8.1:136812-136831 | MS.gene012800:intron | 50.0% | |
GCAGTTCGTACATGCCAAGA+AGG | - | chr8.1:137059-137078 | MS.gene012800:intron | 50.0% | |
GCCATTGCAGCTGTAGACAA+GGG | + | chr8.1:136162-136181 | None:intergenic | 50.0% | |
GCTGGTACAGATACCTTTCC+TGG | - | chr8.1:137761-137780 | MS.gene012800:CDS | 50.0% | |
GCTTCTCAGCTTCACTCCAA+TGG | + | chr8.1:136966-136985 | None:intergenic | 50.0% | |
TCCCAGCTGCTTGATGCAAT+TGG | - | chr8.1:137908-137927 | MS.gene012800:CDS | 50.0% | |
TCCCTTGTCTACAGCTGCAA+TGG | - | chr8.1:136158-136177 | MS.gene012800:CDS | 50.0% | |
TCTCCTCGAACAGATAGAGG+GGG | + | chr8.1:136189-136208 | None:intergenic | 50.0% | |
TGGGATTTGATGCTGAGGTG+AGG | - | chr8.1:137205-137224 | MS.gene012800:CDS | 50.0% | |
TGTCTTGAGTACCCCCTTGA+TGG | - | chr8.1:136836-136855 | MS.gene012800:intron | 50.0% | |
TTCCCAGTAGGTGCCAGATT+AGG | + | chr8.1:137412-137431 | None:intergenic | 50.0% | |
TTTGCAGTCAAGAGGTCCAC+AGG | - | chr8.1:135942-135961 | MS.gene012800:intron | 50.0% | |
! | GACTAGAGAAGTTTGGTGGG+CGG | - | chr8.1:136891-136910 | MS.gene012800:intron | 50.0% |
! | GTGATTGGGAGTGGTATTGG+TGG | - | chr8.1:135781-135800 | MS.gene012800:CDS | 50.0% |
!! | GACTCCACTTTTCCTGGCAT+TGG | - | chr8.1:137821-137840 | MS.gene012800:CDS | 50.0% |
!! | TGTGGAGACTCCACTTTTCC+TGG | - | chr8.1:137815-137834 | MS.gene012800:CDS | 50.0% |
AATGAGCAGCACCTCCAGCA+TGG | + | chr8.1:135870-135889 | None:intergenic | 55.0% | |
AGAGCAGTGGAGAGAGCAGT+GGG | - | chr8.1:137632-137651 | MS.gene012800:CDS | 55.0% | |
AGTGGGACCAGGATTCAGCA+GGG | - | chr8.1:137649-137668 | MS.gene012800:CDS | 55.0% | |
CAGGGTATACGCAGCGATCT+AGG | - | chr8.1:137298-137317 | MS.gene012800:CDS | 55.0% | |
CTTCCCCCTCTATCTGTTCG+AGG | - | chr8.1:136183-136202 | MS.gene012800:CDS | 55.0% | |
GACGCCAATGCCAGGAAAAG+TGG | + | chr8.1:137828-137847 | None:intergenic | 55.0% | |
GATTAGGGAAGGTGGGGTTG+TGG | - | chr8.1:135711-135730 | MS.gene012800:CDS | 55.0% | |
TACCTGCAGCTCCATCAAGG+GGG | + | chr8.1:136850-136869 | None:intergenic | 55.0% | |
TGGGAGGATTAGGGAAGGTG+GGG | - | chr8.1:135705-135724 | MS.gene012800:CDS | 55.0% | |
TTCGAAAGCCACGACCATGC+TGG | - | chr8.1:135853-135872 | MS.gene012800:CDS | 55.0% | |
!! | TGAGCAAGAGGGTTAGCCTG+TGG | + | chr8.1:135961-135980 | None:intergenic | 55.0% |
CACCACTGGCAGCAACTGCA+GGG | + | chr8.1:137850-137869 | None:intergenic | 60.0% | |
CAGTGGGACCAGGATTCAGC+AGG | - | chr8.1:137648-137667 | MS.gene012800:CDS | 60.0% | |
CAGTTGCTCTCCCTTCCCTC+AGG | - | chr8.1:136778-136797 | MS.gene012800:intron | 60.0% | |
GAAAGCCACGACCATGCTGG+AGG | - | chr8.1:135856-135875 | MS.gene012800:CDS | 60.0% | |
GAGAGCAGTGGAGAGAGCAG+TGG | - | chr8.1:137631-137650 | MS.gene012800:CDS | 60.0% | |
GAGCAGCCTGAGGACCCATT+TGG | + | chr8.1:136272-136291 | None:intergenic | 60.0% | |
GTGGAACGAAGAGCAGCCTG+AGG | + | chr8.1:136282-136301 | None:intergenic | 60.0% | |
TACCCCCTTGATGGAGCTGC+AGG | - | chr8.1:136845-136864 | MS.gene012800:intron | 60.0% | |
ACTGCAGGGACGCCAATGCC+AGG | + | chr8.1:137836-137855 | None:intergenic | 65.0% | |
CAGCACCTCCAGCATGGTCG+TGG | + | chr8.1:135864-135883 | None:intergenic | 65.0% | |
GCACCACTGGCAGCAACTGC+AGG | + | chr8.1:137851-137870 | None:intergenic | 65.0% | |
GGGTACTCAAGACAGCCCCC+TGG | + | chr8.1:136830-136849 | None:intergenic | 65.0% | |
GTCCCTGCAGTTGCTGCCAG+TGG | - | chr8.1:137845-137864 | MS.gene012800:CDS | 65.0% | |
GTGGAGAGAGCAGTGGGACC+AGG | - | chr8.1:137638-137657 | MS.gene012800:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 135646 | 137937 | 135646 | ID=MS.gene012800 |
chr8.1 | mRNA | 135646 | 137937 | 135646 | ID=MS.gene012800.t1;Parent=MS.gene012800 |
chr8.1 | exon | 137149 | 137937 | 137149 | ID=MS.gene012800.t1.exon1;Parent=MS.gene012800.t1 |
chr8.1 | CDS | 137149 | 137937 | 137149 | ID=cds.MS.gene012800.t1;Parent=MS.gene012800.t1 |
chr8.1 | exon | 136592 | 136783 | 136592 | ID=MS.gene012800.t1.exon2;Parent=MS.gene012800.t1 |
chr8.1 | CDS | 136592 | 136783 | 136592 | ID=cds.MS.gene012800.t1;Parent=MS.gene012800.t1 |
chr8.1 | exon | 136362 | 136520 | 136362 | ID=MS.gene012800.t1.exon3;Parent=MS.gene012800.t1 |
chr8.1 | CDS | 136362 | 136520 | 136362 | ID=cds.MS.gene012800.t1;Parent=MS.gene012800.t1 |
chr8.1 | exon | 136046 | 136282 | 136046 | ID=MS.gene012800.t1.exon4;Parent=MS.gene012800.t1 |
chr8.1 | CDS | 136046 | 136282 | 136046 | ID=cds.MS.gene012800.t1;Parent=MS.gene012800.t1 |
chr8.1 | exon | 135646 | 135960 | 135646 | ID=MS.gene012800.t1.exon5;Parent=MS.gene012800.t1 |
chr8.1 | CDS | 135646 | 135960 | 135646 | ID=cds.MS.gene012800.t1;Parent=MS.gene012800.t1 |
Gene Sequence |
Protein sequence |