AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012800.t1 MTR_4g134780 98.934 563 6 0 1 563 17 579 0.0 1152
MS.gene012800.t1 MTR_1g054965 31.504 565 320 21 17 550 42 570 8.28e-63 217
MS.gene012800.t1 MTR_1g054965 33.803 355 216 12 203 550 72 414 9.49e-51 181
MS.gene012800.t1 MTR_1g054965 29.681 502 286 21 17 488 42 506 2.17e-42 159
MS.gene012800.t1 MTR_1g054965 31.164 292 182 12 203 488 30 308 1.17e-30 122
MS.gene012800.t1 MTR_8g077580 23.966 580 334 25 24 534 4 545 3.60e-14 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012800.t1 AT1G57770 80.952 525 100 0 39 563 50 574 0.0 901
MS.gene012800.t1 AT1G06820 31.758 529 310 16 39 550 75 569 1.55e-65 224
MS.gene012800.t1 AT1G06820 31.758 529 310 16 39 550 75 569 2.27e-65 224
MS.gene012800.t1 AT1G06820 34.181 354 216 9 203 550 108 450 3.45e-53 188
MS.gene012800.t1 AT1G06820 29.501 461 276 15 39 483 75 502 1.37e-44 166
MS.gene012800.t1 AT5G49555 22.460 561 352 23 31 534 3 537 8.10e-14 74.7

Find 146 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCAAAGAGTCAAGTATT+TGG 0.236602 8.1:+137238 None:intergenic
ATTGCTCACAACAGCCTTCT+TGG 0.241353 8.1:+136488 None:intergenic
TGCTCAAGTTCTTGATGCTT+TGG 0.242947 8.1:-137586 MS.gene012800:CDS
TCAAGAATGGCAGAAGCTTT+TGG 0.272982 8.1:-137436 MS.gene012800:CDS
TTACTTTCTTTCTTGCTTGC+TGG 0.273947 8.1:-137183 MS.gene012800:CDS
TGCCATTCTTGAACAGCTTC+AGG 0.275584 8.1:+137447 None:intergenic
GAGTCAAGTATTTGGGAAAA+AGG 0.286218 8.1:+137246 None:intergenic
GCTCAAGTTCTTGATGCTTT+GGG 0.288521 8.1:-137585 MS.gene012800:CDS
TTCCAAAGTCTTACTCAAAT+AGG 0.312564 8.1:-136422 MS.gene012800:CDS
ATCATATAGTTGTAAATGAT+TGG 0.312848 8.1:-136235 MS.gene012800:CDS
AACTCAAATGGTTCAGTTCC+TGG 0.320765 8.1:+136107 None:intergenic
ATCTTTCATGCATCTCCATT+TGG 0.323021 8.1:-136376 MS.gene012800:CDS
GTCATAGTAATGGGAGGATT+AGG 0.323662 8.1:-137866 MS.gene012800:CDS
CTGAGGACCCATTTGGAAAA+AGG 0.326579 8.1:+137299 None:intergenic
GCTGGTACAGATACCTTTCC+TGG 0.338263 8.1:-135800 MS.gene012800:CDS
TTGCAAAGAGTCAAGTATTT+GGG 0.338675 8.1:+137239 None:intergenic
AGCTTTAAGATTTCTGTATT+CGG 0.338946 8.1:+136058 None:intergenic
CTATCTGTTCGAGGAGATTT+CGG 0.340613 8.1:-137369 MS.gene012800:CDS
GTGTTACATGCTTATCTTCC+AGG 0.349073 8.1:-136125 MS.gene012800:CDS
CAACAATAAAGGTGTGGAAT+TGG 0.355420 8.1:+135767 None:intergenic
TCTTTCATGCATCTCCATTT+GGG 0.358441 8.1:-136375 MS.gene012800:CDS
TCCCAGCTGCTTGATGCAAT+TGG 0.358531 8.1:-135653 MS.gene012800:CDS
CCTGCGCTACTTATGATTCA+TGG 0.371994 8.1:-137551 MS.gene012800:CDS
GATTAGGGAAGGTGGGGTTG+TGG 0.374327 8.1:-137850 MS.gene012800:CDS
TCATAGTAATGGGAGGATTA+GGG 0.375844 8.1:-137865 MS.gene012800:CDS
GAAACAGATGTAATTGTGAT+TGG 0.389065 8.1:-137795 MS.gene012800:CDS
ATCCTATTTGAGTAAGACTT+TGG 0.389095 8.1:+136420 None:intergenic
TGGAGTCTCCACAACAATAA+AGG 0.393345 8.1:+135756 None:intergenic
AGAATCCTTTCATACGCAAT+TGG 0.397759 8.1:-137212 MS.gene012800:CDS
ACTCCTAATCTGGCACCTAC+TGG 0.397996 8.1:-136155 MS.gene012800:CDS
TTCCAATTGCATCAAGCAGC+TGG 0.400845 8.1:+135651 None:intergenic
CATTTCTCCCTGCTGAATCC+TGG 0.401568 8.1:+135905 None:intergenic
TCATATAGTTGTAAATGATT+GGG 0.417919 8.1:-136234 MS.gene012800:CDS
TAGTGTACTTACTCCTAATC+TGG 0.419014 8.1:-136165 MS.gene012800:CDS
AACTGAACCATTTGAGTTGT+GGG 0.419173 8.1:-136102 MS.gene012800:CDS
CAGGGTATACGCAGCGATCT+AGG 0.420176 8.1:-136263 MS.gene012800:CDS
TCCGGTCCATCATTATTCTC+TGG 0.421373 8.1:-137642 MS.gene012800:CDS
ATTGTGATTGGGAGTGGTAT+TGG 0.424946 8.1:-137783 MS.gene012800:CDS
GTTGTAAATGATTGGGAAAG+AGG 0.432129 8.1:-136227 MS.gene012800:CDS
GAGCAGCCTGAGGACCCATT+TGG 0.432543 8.1:+137292 None:intergenic
TCACACATCAAAGGTTTCTT+CGG 0.434054 8.1:-135856 MS.gene012800:CDS
GTACGAGGACTAGAGAAGTT+TGG 0.436491 8.1:-136677 MS.gene012800:CDS
ATCATCATAGTCATAGTAAT+GGG 0.437707 8.1:-137875 MS.gene012800:CDS
CGTGACAAGAAATCAGCTTC+AGG 0.438051 8.1:+137516 None:intergenic
AAATCTCCTCGAACAGATAG+AGG 0.446661 8.1:+137372 None:intergenic
ACTGCAGGGACGCCAATGCC+AGG 0.458440 8.1:+135728 None:intergenic
AAATGTGAAGTGAAGTTAGT+TGG 0.458953 8.1:-135887 MS.gene012800:CDS
ACTTTGGAACAACTTCTTGA+GGG 0.464503 8.1:+136436 None:intergenic
GCACCACTGGCAGCAACTGC+AGG 0.466053 8.1:+135713 None:intergenic
AATGGGAGGATTAGGGAAGG+TGG 0.469524 8.1:-137858 MS.gene012800:CDS
TCTGTACCAGCTTGTATAGC+TGG 0.473355 8.1:+135812 None:intergenic
CAGTGGGACCAGGATTCAGC+AGG 0.478022 8.1:-135913 MS.gene012800:CDS
AGGTTTACATGTTTGCAGAA+TGG 0.481167 8.1:-136763 MS.gene012800:CDS
AAAGGCTATAAGTTTGATTC+CGG 0.484501 8.1:-137660 MS.gene012800:CDS
ATTCCACACCTTTATTGTTG+TGG 0.492890 8.1:-135764 MS.gene012800:CDS
AAACAGATGTAATTGTGATT+GGG 0.492966 8.1:-137794 MS.gene012800:CDS
CATCATCATAGTCATAGTAA+TGG 0.495952 8.1:-137876 MS.gene012800:CDS
GTGGAGAGAGCAGTGGGACC+AGG 0.499060 8.1:-135923 MS.gene012800:CDS
ATGGGAGGATTAGGGAAGGT+GGG 0.499467 8.1:-137857 MS.gene012800:CDS
CAGCACCTCCAGCATGGTCG+TGG 0.499748 8.1:+137700 None:intergenic
CGGAGGAACAGAGGAACATA+TGG 0.499814 8.1:-135836 MS.gene012800:CDS
AGTCCTTCCCACAACTCAAA+TGG 0.501774 8.1:+136095 None:intergenic
CAATACCTGCAGCTCCATCA+AGG 0.503593 8.1:+136711 None:intergenic
TCCCTTGTCTACAGCTGCAA+TGG 0.505505 8.1:-137403 MS.gene012800:CDS
AGAAATCAGCTTCAGGTACA+TGG 0.506854 8.1:+137523 None:intergenic
CTCCTAATCTGGCACCTACT+GGG 0.508705 8.1:-136154 MS.gene012800:CDS
GCTTCTCAGCTTCACTCCAA+TGG 0.509152 8.1:+136598 None:intergenic
CCTCAGCATCAAATCCCAAA+TGG 0.511011 8.1:+136361 None:intergenic
CCATGAATCATAAGTAGCGC+AGG 0.513899 8.1:+137551 None:intergenic
GACGCCAATGCCAGGAAAAG+TGG 0.514468 8.1:+135736 None:intergenic
TGGGAGGATTAGGGAAGGTG+GGG 0.517140 8.1:-137856 MS.gene012800:CDS
TAGTATATTGTCTGCAGAGA+TGG 0.518916 8.1:-137148 MS.gene012800:intron
TTCCCAGTAGGTGCCAGATT+AGG 0.527245 8.1:+136152 None:intergenic
ACCAGAGAATAATGATGGAC+CGG 0.531175 8.1:+137641 None:intergenic
GAACTGAACCATTTGAGTTG+TGG 0.531241 8.1:-136103 MS.gene012800:CDS
ATTAGCTACAATTGCACCAC+TGG 0.535074 8.1:+135700 None:intergenic
GACTTTGGAACAACTTCTTG+AGG 0.536940 8.1:+136435 None:intergenic
GTCCTGAAGCTGTTCAAGAA+TGG 0.537122 8.1:-137449 MS.gene012800:CDS
TCAATCCAATTGCGTATGAA+AGG 0.537955 8.1:+137207 None:intergenic
TGCAAACCAGAGAATAATGA+TGG 0.543994 8.1:+137636 None:intergenic
TTCGAAAGCCACGACCATGC+TGG 0.544052 8.1:-137708 MS.gene012800:CDS
TTCTCTGGTTTGCAGTCAAG+AGG 0.544317 8.1:-137627 MS.gene012800:CDS
AAGGACCTTCACAACTATGC+AGG 0.545742 8.1:-137471 MS.gene012800:CDS
CGCTACTTATGATTCATGGA+TGG 0.556127 8.1:-137547 MS.gene012800:CDS
GTCCCTGCAGTTGCTGCCAG+TGG 0.557851 8.1:-135716 MS.gene012800:CDS
AGCCATTGCAGCTGTAGACA+AGG 0.561564 8.1:+137401 None:intergenic
AATACCTGCAGCTCCATCAA+GGG 0.564396 8.1:+136712 None:intergenic
TCCAATTGCATCAAGCAGCT+GGG 0.566641 8.1:+135652 None:intergenic
GTGATTGGGAGTGGTATTGG+TGG 0.570399 8.1:-137780 MS.gene012800:CDS
GCATCAAGAACTTGAGCAAG+AGG 0.572179 8.1:+137591 None:intergenic
GTTGAAAATGACAGAGCCAT+TGG 0.574831 8.1:-136614 MS.gene012800:CDS
CCATTTGGGATTTGATGCTG+AGG 0.576837 8.1:-136361 MS.gene012800:intron
TTTGCAGTCAAGAGGTCCAC+AGG 0.577098 8.1:-137619 MS.gene012800:CDS
CACATCAAAGGTTTCTTCGG+AGG 0.578196 8.1:-135853 MS.gene012800:CDS
CAGGACCTGCATAGTTGTGA+AGG 0.579792 8.1:+137466 None:intergenic
AGAGCAGTGGAGAGAGCAGT+GGG 0.579813 8.1:-135929 MS.gene012800:CDS
GAAGTCCACTCACACATCAA+AGG 0.579934 8.1:-135865 MS.gene012800:CDS
GCAGTTCGTACATGCCAAGA+AGG 0.580617 8.1:-136502 MS.gene012800:intron
GAGAGCAGTGGAGAGAGCAG+TGG 0.581460 8.1:-135930 MS.gene012800:CDS
ATCATAAGTAGCGCAGGGGA+CGG 0.583077 8.1:+137557 None:intergenic
ACTGAGTTGTGCAGCACTGT+TGG 0.584888 8.1:-137757 MS.gene012800:CDS
GCCATTGCAGCTGTAGACAA+GGG 0.590322 8.1:+137402 None:intergenic
CGAGGACTAGAGAAGTTTGG+TGG 0.591605 8.1:-136674 MS.gene012800:CDS
CAAACAACAAATAGATAATG+TGG 0.592493 8.1:-135952 MS.gene012800:intron
GATGTAATTGTGATTGGGAG+TGG 0.593011 8.1:-137789 MS.gene012800:CDS
AATCTCCTCGAACAGATAGA+GGG 0.593766 8.1:+137373 None:intergenic
AGATTAGGAGTAAGTACACT+AGG 0.595451 8.1:+136167 None:intergenic
GCTGATTTCTTGTCACGCAT+AGG 0.597690 8.1:-137510 MS.gene012800:CDS
CACCACTGGCAGCAACTGCA+GGG 0.605933 8.1:+135714 None:intergenic
TGGAGTTGAATGTCCAGGAA+AGG 0.606615 8.1:+135787 None:intergenic
CATGAATCATAAGTAGCGCA+GGG 0.607675 8.1:+137552 None:intergenic
GAACCATTTGAGTTGTGGGA+AGG 0.609081 8.1:-136098 MS.gene012800:CDS
TTTGCAGAATGGTACAAACC+AGG 0.612324 8.1:-136752 MS.gene012800:CDS
TATGGACCAGCTATACAAGC+TGG 0.613740 8.1:-135818 MS.gene012800:CDS
TTGCAGAATGGTACAAACCA+GGG 0.620272 8.1:-136751 MS.gene012800:CDS
ATAGATAATGTGGAGAGCAG+TGG 0.622582 8.1:-135942 MS.gene012800:intron
GGAATTGGAGTTGAATGTCC+AGG 0.624562 8.1:+135782 None:intergenic
AGGTTTCTTCGGAGGAACAG+AGG 0.626999 8.1:-135845 MS.gene012800:CDS
GACTAGAGAAGTTTGGTGGG+CGG 0.629357 8.1:-136670 MS.gene012800:CDS
ATTGTTGATGCTCTTGTACG+AGG 0.629566 8.1:-136692 MS.gene012800:CDS
CATCAAGAACTTGAGCAAGA+GGG 0.633604 8.1:+137592 None:intergenic
ATTGGAGTGAAGCTGAGAAG+CGG 0.638801 8.1:-136596 MS.gene012800:CDS
AATGAGCAGCACCTCCAGCA+TGG 0.642493 8.1:+137694 None:intergenic
ATACCTGCAGCTCCATCAAG+GGG 0.643456 8.1:+136713 None:intergenic
TCTTAAAGCTCAAAGATCAG+AGG 0.643901 8.1:-136045 MS.gene012800:intron
TGCAGAATGGTACAAACCAG+GGG 0.644445 8.1:-136750 MS.gene012800:CDS
ATCTCCTCGAACAGATAGAG+GGG 0.646167 8.1:+137374 None:intergenic
ATCATAGTCATAGTAATGGG+AGG 0.651087 8.1:-137872 MS.gene012800:CDS
AAAAGGTGAGAGAAGTTGTG+TGG 0.652152 8.1:+137263 None:intergenic
TGTAACACATGTTTCCCAGT+AGG 0.652977 8.1:+136140 None:intergenic
TGAGCAAGAGGGTTAGCCTG+TGG 0.654171 8.1:+137603 None:intergenic
GATTTCTCTTCAAAGTCACG+TGG 0.656256 8.1:-136648 MS.gene012800:CDS
GAGGACTAGAGAAGTTTGGT+GGG 0.661720 8.1:-136673 MS.gene012800:CDS
TCTCCACAACAATAAAGGTG+TGG 0.665845 8.1:+135761 None:intergenic
AGAAACCTTTGATGTGTGAG+TGG 0.673422 8.1:+135860 None:intergenic
AGGTGCATATCTAGCAGCAG+CGG 0.676346 8.1:+137335 None:intergenic
GAAAGCCACGACCATGCTGG+AGG 0.682926 8.1:-137705 MS.gene012800:CDS
AGTGGGACCAGGATTCAGCA+GGG 0.693423 8.1:-135912 MS.gene012800:CDS
TGTGAGCAATGCATCAATGT+GGG 0.699079 8.1:-136475 MS.gene012800:CDS
TTGTGAGCAATGCATCAATG+TGG 0.700183 8.1:-136476 MS.gene012800:CDS
TCTCCTCGAACAGATAGAGG+GGG 0.703760 8.1:+137375 None:intergenic
AGTAATGGGAGGATTAGGGA+AGG 0.709466 8.1:-137861 MS.gene012800:CDS
GTGGAACGAAGAGCAGCCTG+AGG 0.714071 8.1:+137282 None:intergenic
ATGAATCATAAGTAGCGCAG+GGG 0.721253 8.1:+137553 None:intergenic
GCAGAATGGTACAAACCAGG+GGG 0.746992 8.1:-136749 MS.gene012800:CDS
TACCTGCAGCTCCATCAAGG+GGG 0.749948 8.1:+136714 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAATTAATATACTTACT+TGG + chr8.1:136991-137010 None:intergenic 15.0%
!!! TGATTTTTAAGAAATGAAAT+TGG + chr8.1:136662-136681 None:intergenic 15.0%
!! ATAACACATAAATCTCTAAA+GGG - chr8.1:136579-136598 MS.gene012800:intron 20.0%
!! ATCATATAGTTGTAAATGAT+TGG - chr8.1:137326-137345 MS.gene012800:CDS 20.0%
!! TCATATAGTTGTAAATGATT+GGG - chr8.1:137327-137346 MS.gene012800:CDS 20.0%
! AAACAGATGTAATTGTGATT+GGG - chr8.1:135767-135786 MS.gene012800:CDS 25.0%
! ATCATCATAGTCATAGTAAT+GGG - chr8.1:135686-135705 MS.gene012800:CDS 25.0%
! CAAACAACAAATAGATAATG+TGG - chr8.1:137609-137628 MS.gene012800:CDS 25.0%
! CATAACACATAAATCTCTAA+AGG - chr8.1:136578-136597 MS.gene012800:intron 25.0%
!! TTCAATACCTTTTTCCAAAT+GGG - chr8.1:136255-136274 MS.gene012800:CDS 25.0%
!! TTTCAATACCTTTTTCCAAA+TGG - chr8.1:136254-136273 MS.gene012800:CDS 25.0%
!!! AAAAAGGTATTGAAAAGAGA+AGG + chr8.1:136249-136268 None:intergenic 25.0%
!!! AGCTTTAAGATTTCTGTATT+CGG + chr8.1:137506-137525 None:intergenic 25.0%
AAAGGCTATAAGTTTGATTC+CGG - chr8.1:135901-135920 MS.gene012800:CDS 30.0%
AAATGTGAAGTGAAGTTAGT+TGG - chr8.1:137674-137693 MS.gene012800:CDS 30.0%
AGGATAGAAACTAGTTATTG+TGG + chr8.1:136520-136539 None:intergenic 30.0%
ATCCTATTTGAGTAAGACTT+TGG + chr8.1:137144-137163 None:intergenic 30.0%
CATCATCATAGTCATAGTAA+TGG - chr8.1:135685-135704 MS.gene012800:CDS 30.0%
GAAACAGATGTAATTGTGAT+TGG - chr8.1:135766-135785 MS.gene012800:CDS 30.0%
TTCCAAAGTCTTACTCAAAT+AGG - chr8.1:137139-137158 MS.gene012800:intron 30.0%
TTGCAAAGAGTCAAGTATTT+GGG + chr8.1:136325-136344 None:intergenic 30.0%
ACCTAAAAGCAGCAGTTAAA+TGG - chr8.1:136681-136700 MS.gene012800:CDS 35.0%
ACTGTCTCTAAGTAAACAAC+AGG + chr8.1:136625-136644 None:intergenic 35.0%
AGAATCCTTTCATACGCAAT+TGG - chr8.1:136349-136368 MS.gene012800:intron 35.0%
AGATTAGGAGTAAGTACACT+AGG + chr8.1:137397-137416 None:intergenic 35.0%
AGGTTTACATGTTTGCAGAA+TGG - chr8.1:136798-136817 MS.gene012800:intron 35.0%
ATCTTTCATGCATCTCCATT+TGG - chr8.1:137185-137204 MS.gene012800:CDS 35.0%
ATTCCACACCTTTATTGTTG+TGG - chr8.1:137797-137816 MS.gene012800:CDS 35.0%
GAAAACTAACGAAATAGTGC+TGG - chr8.1:136707-136726 MS.gene012800:CDS 35.0%
GAATACTTCAAACAGATGCA+TGG + chr8.1:137265-137284 None:intergenic 35.0%
GAGTCAAGTATTTGGGAAAA+AGG + chr8.1:136318-136337 None:intergenic 35.0%
GTTGCAAAGAGTCAAGTATT+TGG + chr8.1:136326-136345 None:intergenic 35.0%
GTTGTAAATGATTGGGAAAG+AGG - chr8.1:137334-137353 MS.gene012800:CDS 35.0%
TAGTATATTGTCTGCAGAGA+TGG - chr8.1:136413-136432 MS.gene012800:CDS 35.0%
TAGTGTACTTACTCCTAATC+TGG - chr8.1:137396-137415 MS.gene012800:CDS 35.0%
TCAATCCAATTGCGTATGAA+AGG + chr8.1:136357-136376 None:intergenic 35.0%
TCACACATCAAAGGTTTCTT+CGG - chr8.1:137705-137724 MS.gene012800:CDS 35.0%
TCTGCACAAAAAAATGAGAG+AGG + chr8.1:136540-136559 None:intergenic 35.0%
TCTTAAAGCTCAAAGATCAG+AGG - chr8.1:137516-137535 MS.gene012800:CDS 35.0%
TCTTTCATGCATCTCCATTT+GGG - chr8.1:137186-137205 MS.gene012800:CDS 35.0%
TGCAAACCAGAGAATAATGA+TGG + chr8.1:135928-135947 None:intergenic 35.0%
TTACTTTCTTTCTTGCTTGC+TGG - chr8.1:136378-136397 MS.gene012800:CDS 35.0%
! AGGTCCTACTGAGTTTTTAA+AGG - chr8.1:136071-136090 MS.gene012800:CDS 35.0%
! AGGTCCTTTAAAAACTCAGT+AGG + chr8.1:136078-136097 None:intergenic 35.0%
! ATCATAGTCATAGTAATGGG+AGG - chr8.1:135689-135708 MS.gene012800:CDS 35.0%
! CAACAATAAAGGTGTGGAAT+TGG + chr8.1:137797-137816 None:intergenic 35.0%
! GCTCATTCTTTTGATGTCAA+AGG - chr8.1:135883-135902 MS.gene012800:CDS 35.0%
! TCATAGTAATGGGAGGATTA+GGG - chr8.1:135696-135715 MS.gene012800:CDS 35.0%
!! AACTGAACCATTTGAGTTGT+GGG - chr8.1:137459-137478 MS.gene012800:CDS 35.0%
!! ACTTTGGAACAACTTCTTGA+GGG + chr8.1:137128-137147 None:intergenic 35.0%
!!! TCCATTTAACTGCTGCTTTT+AGG + chr8.1:136685-136704 None:intergenic 35.0%
AAAAGGTGAGAGAAGTTGTG+TGG + chr8.1:136301-136320 None:intergenic 40.0%
AAACATGTAAACCTGAGGGA+AGG + chr8.1:136792-136811 None:intergenic 40.0%
AAATCTCCTCGAACAGATAG+AGG + chr8.1:136192-136211 None:intergenic 40.0%
AACATGTAAACCTGAGGGAA+GGG + chr8.1:136791-136810 None:intergenic 40.0%
AACTCAAATGGTTCAGTTCC+TGG + chr8.1:137457-137476 None:intergenic 40.0%
AATCTCCTCGAACAGATAGA+GGG + chr8.1:136191-136210 None:intergenic 40.0%
AGAAACCTTTGATGTGTGAG+TGG + chr8.1:137704-137723 None:intergenic 40.0%
AGAAATCAGCTTCAGGTACA+TGG + chr8.1:136041-136060 None:intergenic 40.0%
ATAGATAATGTGGAGAGCAG+TGG - chr8.1:137619-137638 MS.gene012800:CDS 40.0%
ATGAATCATAAGTAGCGCAG+GGG + chr8.1:136011-136030 None:intergenic 40.0%
ATTAGCTACAATTGCACCAC+TGG + chr8.1:137864-137883 None:intergenic 40.0%
ATTGTGATTGGGAGTGGTAT+TGG - chr8.1:135778-135797 MS.gene012800:CDS 40.0%
ATTGTTGATGCTCTTGTACG+AGG - chr8.1:136869-136888 MS.gene012800:intron 40.0%
CATCAAGAACTTGAGCAAGA+GGG + chr8.1:135972-135991 None:intergenic 40.0%
CATGAATCATAAGTAGCGCA+GGG + chr8.1:136012-136031 None:intergenic 40.0%
CGCTACTTATGATTCATGGA+TGG - chr8.1:136014-136033 MS.gene012800:intron 40.0%
CTATCTGTTCGAGGAGATTT+CGG - chr8.1:136192-136211 MS.gene012800:CDS 40.0%
CTGCAAACATGTAAACCTGA+GGG + chr8.1:136796-136815 None:intergenic 40.0%
GATGTAATTGTGATTGGGAG+TGG - chr8.1:135772-135791 MS.gene012800:CDS 40.0%
GATTTCTCTTCAAAGTCACG+TGG - chr8.1:136913-136932 MS.gene012800:intron 40.0%
GCTCAAGTTCTTGATGCTTT+GGG - chr8.1:135976-135995 MS.gene012800:intron 40.0%
GTGTTACATGCTTATCTTCC+AGG - chr8.1:137436-137455 MS.gene012800:CDS 40.0%
GTTGAAAATGACAGAGCCAT+TGG - chr8.1:136947-136966 MS.gene012800:intron 40.0%
TATTCAACATCGAGTGAGCA+GGG - chr8.1:137280-137299 MS.gene012800:CDS 40.0%
TCTCCACAACAATAAAGGTG+TGG + chr8.1:137803-137822 None:intergenic 40.0%
TCTGCAAACATGTAAACCTG+AGG + chr8.1:136797-136816 None:intergenic 40.0%
TGCTCAAGTTCTTGATGCTT+TGG - chr8.1:135975-135994 MS.gene012800:intron 40.0%
TGGAGTCTCCACAACAATAA+AGG + chr8.1:137808-137827 None:intergenic 40.0%
TGTAACACATGTTTCCCAGT+AGG + chr8.1:137424-137443 None:intergenic 40.0%
TGTGAGCAATGCATCAATGT+GGG - chr8.1:137086-137105 MS.gene012800:intron 40.0%
TTGCAGAATGGTACAAACCA+GGG - chr8.1:136810-136829 MS.gene012800:intron 40.0%
TTGTGAGCAATGCATCAATG+TGG - chr8.1:137085-137104 MS.gene012800:intron 40.0%
TTTGCAGAATGGTACAAACC+AGG - chr8.1:136809-136828 MS.gene012800:intron 40.0%
! AATGATTGCACGTTGATGAG+TGG + chr8.1:136471-136490 None:intergenic 40.0%
! GTCATAGTAATGGGAGGATT+AGG - chr8.1:135695-135714 MS.gene012800:CDS 40.0%
! TCAAGAATGGCAGAAGCTTT+TGG - chr8.1:136125-136144 MS.gene012800:CDS 40.0%
!! ACCAGAGAATAATGATGGAC+CGG + chr8.1:135923-135942 None:intergenic 40.0%
!! GAACTGAACCATTTGAGTTG+TGG - chr8.1:137458-137477 MS.gene012800:CDS 40.0%
!! GACTTTGGAACAACTTCTTG+AGG + chr8.1:137129-137148 None:intergenic 40.0%
!! TGATGAGTGGTAATGGCAAT+TGG + chr8.1:136458-136477 None:intergenic 40.0%
AAGGACCTTCACAACTATGC+AGG - chr8.1:136090-136109 MS.gene012800:CDS 45.0%
AATACCTGCAGCTCCATCAA+GGG + chr8.1:136852-136871 None:intergenic 45.0%
AGTCCTTCCCACAACTCAAA+TGG + chr8.1:137469-137488 None:intergenic 45.0%
ATCTCCTCGAACAGATAGAG+GGG + chr8.1:136190-136209 None:intergenic 45.0%
ATTGCTCACAACAGCCTTCT+TGG + chr8.1:137076-137095 None:intergenic 45.0%
ATTGGAGTGAAGCTGAGAAG+CGG - chr8.1:136965-136984 MS.gene012800:intron 45.0%
CACATCAAAGGTTTCTTCGG+AGG - chr8.1:137708-137727 MS.gene012800:CDS 45.0%
CCATGAATCATAAGTAGCGC+AGG + chr8.1:136013-136032 None:intergenic 45.0%
CCTCAGCATCAAATCCCAAA+TGG + chr8.1:137203-137222 None:intergenic 45.0%
CCTGCGCTACTTATGATTCA+TGG - chr8.1:136010-136029 MS.gene012800:intron 45.0%
CGTGACAAGAAATCAGCTTC+AGG + chr8.1:136048-136067 None:intergenic 45.0%
CTGAGGACCCATTTGGAAAA+AGG + chr8.1:136265-136284 None:intergenic 45.0%
GAAGTCCACTCACACATCAA+AGG - chr8.1:137696-137715 MS.gene012800:CDS 45.0%
GAGGACTAGAGAAGTTTGGT+GGG - chr8.1:136888-136907 MS.gene012800:intron 45.0%
GCATCAAGAACTTGAGCAAG+AGG + chr8.1:135973-135992 None:intergenic 45.0%
GGAATTGGAGTTGAATGTCC+AGG + chr8.1:137782-137801 None:intergenic 45.0%
GTACGAGGACTAGAGAAGTT+TGG - chr8.1:136884-136903 MS.gene012800:intron 45.0%
GTATTCAACATCGAGTGAGC+AGG - chr8.1:137279-137298 MS.gene012800:CDS 45.0%
GTCCTGAAGCTGTTCAAGAA+TGG - chr8.1:136112-136131 MS.gene012800:CDS 45.0%
TATGGACCAGCTATACAAGC+TGG - chr8.1:137743-137762 MS.gene012800:CDS 45.0%
TCCAATTGCATCAAGCAGCT+GGG + chr8.1:137912-137931 None:intergenic 45.0%
TCCGGTCCATCATTATTCTC+TGG - chr8.1:135919-135938 MS.gene012800:CDS 45.0%
TCTGTACCAGCTTGTATAGC+TGG + chr8.1:137752-137771 None:intergenic 45.0%
TGCAGAATGGTACAAACCAG+GGG - chr8.1:136811-136830 MS.gene012800:intron 45.0%
TGCCATTCTTGAACAGCTTC+AGG + chr8.1:136117-136136 None:intergenic 45.0%
TGGAGTTGAATGTCCAGGAA+AGG + chr8.1:137777-137796 None:intergenic 45.0%
TTCCAATTGCATCAAGCAGC+TGG + chr8.1:137913-137932 None:intergenic 45.0%
! AGTAATGGGAGGATTAGGGA+AGG - chr8.1:135700-135719 MS.gene012800:CDS 45.0%
! CCATTTGGGATTTGATGCTG+AGG - chr8.1:137200-137219 MS.gene012800:CDS 45.0%
! CTTTTTCCAAATGGGTCCTC+AGG - chr8.1:136263-136282 MS.gene012800:CDS 45.0%
! GCTGATTTCTTGTCACGCAT+AGG - chr8.1:136051-136070 MS.gene012800:CDS 45.0%
! TGCACGTTGATGAGTGGTAA+TGG + chr8.1:136465-136484 None:intergenic 45.0%
! TTCTCTGGTTTGCAGTCAAG+AGG - chr8.1:135934-135953 MS.gene012800:CDS 45.0%
! TTGATGCTGAGGTGAGGTTT+TGG - chr8.1:137211-137230 MS.gene012800:CDS 45.0%
!! GAACCATTTGAGTTGTGGGA+AGG - chr8.1:137463-137482 MS.gene012800:CDS 45.0%
AATGGGAGGATTAGGGAAGG+TGG - chr8.1:135703-135722 MS.gene012800:CDS 50.0%
ACTCCTAATCTGGCACCTAC+TGG - chr8.1:137406-137425 MS.gene012800:CDS 50.0%
ACTGAGTTGTGCAGCACTGT+TGG - chr8.1:135804-135823 MS.gene012800:CDS 50.0%
AGCCATTGCAGCTGTAGACA+AGG + chr8.1:136163-136182 None:intergenic 50.0%
AGGTGCATATCTAGCAGCAG+CGG + chr8.1:136229-136248 None:intergenic 50.0%
AGGTTTCTTCGGAGGAACAG+AGG - chr8.1:137716-137735 MS.gene012800:CDS 50.0%
ATACCTGCAGCTCCATCAAG+GGG + chr8.1:136851-136870 None:intergenic 50.0%
ATCATAAGTAGCGCAGGGGA+CGG + chr8.1:136007-136026 None:intergenic 50.0%
ATGGGAGGATTAGGGAAGGT+GGG - chr8.1:135704-135723 MS.gene012800:CDS 50.0%
CAATACCTGCAGCTCCATCA+AGG + chr8.1:136853-136872 None:intergenic 50.0%
CAGGACCTGCATAGTTGTGA+AGG + chr8.1:136098-136117 None:intergenic 50.0%
CATTTCTCCCTGCTGAATCC+TGG + chr8.1:137659-137678 None:intergenic 50.0%
CGAGGACTAGAGAAGTTTGG+TGG - chr8.1:136887-136906 MS.gene012800:intron 50.0%
CGGAGGAACAGAGGAACATA+TGG - chr8.1:137725-137744 MS.gene012800:CDS 50.0%
CTCCTAATCTGGCACCTACT+GGG - chr8.1:137407-137426 MS.gene012800:CDS 50.0%
GCAGAATGGTACAAACCAGG+GGG - chr8.1:136812-136831 MS.gene012800:intron 50.0%
GCAGTTCGTACATGCCAAGA+AGG - chr8.1:137059-137078 MS.gene012800:intron 50.0%
GCCATTGCAGCTGTAGACAA+GGG + chr8.1:136162-136181 None:intergenic 50.0%
GCTGGTACAGATACCTTTCC+TGG - chr8.1:137761-137780 MS.gene012800:CDS 50.0%
GCTTCTCAGCTTCACTCCAA+TGG + chr8.1:136966-136985 None:intergenic 50.0%
TCCCAGCTGCTTGATGCAAT+TGG - chr8.1:137908-137927 MS.gene012800:CDS 50.0%
TCCCTTGTCTACAGCTGCAA+TGG - chr8.1:136158-136177 MS.gene012800:CDS 50.0%
TCTCCTCGAACAGATAGAGG+GGG + chr8.1:136189-136208 None:intergenic 50.0%
TGGGATTTGATGCTGAGGTG+AGG - chr8.1:137205-137224 MS.gene012800:CDS 50.0%
TGTCTTGAGTACCCCCTTGA+TGG - chr8.1:136836-136855 MS.gene012800:intron 50.0%
TTCCCAGTAGGTGCCAGATT+AGG + chr8.1:137412-137431 None:intergenic 50.0%
TTTGCAGTCAAGAGGTCCAC+AGG - chr8.1:135942-135961 MS.gene012800:intron 50.0%
! GACTAGAGAAGTTTGGTGGG+CGG - chr8.1:136891-136910 MS.gene012800:intron 50.0%
! GTGATTGGGAGTGGTATTGG+TGG - chr8.1:135781-135800 MS.gene012800:CDS 50.0%
!! GACTCCACTTTTCCTGGCAT+TGG - chr8.1:137821-137840 MS.gene012800:CDS 50.0%
!! TGTGGAGACTCCACTTTTCC+TGG - chr8.1:137815-137834 MS.gene012800:CDS 50.0%
AATGAGCAGCACCTCCAGCA+TGG + chr8.1:135870-135889 None:intergenic 55.0%
AGAGCAGTGGAGAGAGCAGT+GGG - chr8.1:137632-137651 MS.gene012800:CDS 55.0%
AGTGGGACCAGGATTCAGCA+GGG - chr8.1:137649-137668 MS.gene012800:CDS 55.0%
CAGGGTATACGCAGCGATCT+AGG - chr8.1:137298-137317 MS.gene012800:CDS 55.0%
CTTCCCCCTCTATCTGTTCG+AGG - chr8.1:136183-136202 MS.gene012800:CDS 55.0%
GACGCCAATGCCAGGAAAAG+TGG + chr8.1:137828-137847 None:intergenic 55.0%
GATTAGGGAAGGTGGGGTTG+TGG - chr8.1:135711-135730 MS.gene012800:CDS 55.0%
TACCTGCAGCTCCATCAAGG+GGG + chr8.1:136850-136869 None:intergenic 55.0%
TGGGAGGATTAGGGAAGGTG+GGG - chr8.1:135705-135724 MS.gene012800:CDS 55.0%
TTCGAAAGCCACGACCATGC+TGG - chr8.1:135853-135872 MS.gene012800:CDS 55.0%
!! TGAGCAAGAGGGTTAGCCTG+TGG + chr8.1:135961-135980 None:intergenic 55.0%
CACCACTGGCAGCAACTGCA+GGG + chr8.1:137850-137869 None:intergenic 60.0%
CAGTGGGACCAGGATTCAGC+AGG - chr8.1:137648-137667 MS.gene012800:CDS 60.0%
CAGTTGCTCTCCCTTCCCTC+AGG - chr8.1:136778-136797 MS.gene012800:intron 60.0%
GAAAGCCACGACCATGCTGG+AGG - chr8.1:135856-135875 MS.gene012800:CDS 60.0%
GAGAGCAGTGGAGAGAGCAG+TGG - chr8.1:137631-137650 MS.gene012800:CDS 60.0%
GAGCAGCCTGAGGACCCATT+TGG + chr8.1:136272-136291 None:intergenic 60.0%
GTGGAACGAAGAGCAGCCTG+AGG + chr8.1:136282-136301 None:intergenic 60.0%
TACCCCCTTGATGGAGCTGC+AGG - chr8.1:136845-136864 MS.gene012800:intron 60.0%
ACTGCAGGGACGCCAATGCC+AGG + chr8.1:137836-137855 None:intergenic 65.0%
CAGCACCTCCAGCATGGTCG+TGG + chr8.1:135864-135883 None:intergenic 65.0%
GCACCACTGGCAGCAACTGC+AGG + chr8.1:137851-137870 None:intergenic 65.0%
GGGTACTCAAGACAGCCCCC+TGG + chr8.1:136830-136849 None:intergenic 65.0%
GTCCCTGCAGTTGCTGCCAG+TGG - chr8.1:137845-137864 MS.gene012800:CDS 65.0%
GTGGAGAGAGCAGTGGGACC+AGG - chr8.1:137638-137657 MS.gene012800:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 135646 137937 135646 ID=MS.gene012800
chr8.1 mRNA 135646 137937 135646 ID=MS.gene012800.t1;Parent=MS.gene012800
chr8.1 exon 137149 137937 137149 ID=MS.gene012800.t1.exon1;Parent=MS.gene012800.t1
chr8.1 CDS 137149 137937 137149 ID=cds.MS.gene012800.t1;Parent=MS.gene012800.t1
chr8.1 exon 136592 136783 136592 ID=MS.gene012800.t1.exon2;Parent=MS.gene012800.t1
chr8.1 CDS 136592 136783 136592 ID=cds.MS.gene012800.t1;Parent=MS.gene012800.t1
chr8.1 exon 136362 136520 136362 ID=MS.gene012800.t1.exon3;Parent=MS.gene012800.t1
chr8.1 CDS 136362 136520 136362 ID=cds.MS.gene012800.t1;Parent=MS.gene012800.t1
chr8.1 exon 136046 136282 136046 ID=MS.gene012800.t1.exon4;Parent=MS.gene012800.t1
chr8.1 CDS 136046 136282 136046 ID=cds.MS.gene012800.t1;Parent=MS.gene012800.t1
chr8.1 exon 135646 135960 135646 ID=MS.gene012800.t1.exon5;Parent=MS.gene012800.t1
chr8.1 CDS 135646 135960 135646 ID=cds.MS.gene012800.t1;Parent=MS.gene012800.t1
Gene Sequence

>MS.gene012800

ATGAGAGTGAGAAGATACTGTTCAAGAATTGATGATGATCATCATCATAGTCATAGTAATGGGAGGATTAGGGAAGGTGGGGTTGTGGTGCGAAACAGCAGCAACAAAGTAGATGAAACAGAAACAGATGTAATTGTGATTGGGAGTGGTATTGGTGGACTGAGTTGTGCAGCACTGTTGGCAAGATATGAACAAGATGTTGTCGTTTTCGAAAGCCACGACCATGCTGGAGGTGCTGCTCATTCTTTTGATGTCAAAGGCTATAAGTTTGATTCCGGTCCATCATTATTCTCTGGTTTGCAGTCAAGAGGTCCACAGGCTAACCCTCTTGCTCAAGTTCTTGATGCTTTGGGAGAGTCCGTCCCCTGCGCTACTTATGATTCATGGATGGTCCATGTACCTGAAGCTGATTTCTTGTCACGCATAGGTCCTACTGAGTTTTTAAAGGACCTTCACAACTATGCAGGTCCTGAAGCTGTTCAAGAATGGCAGAAGCTTTTGGATGCTGTACTTCCCTTGTCTACAGCTGCAATGGCTCTTCCCCCTCTATCTGTTCGAGGAGATTTCGGTGTTCTTTACACCGCTGCTGCTAGATATGCACCTTCTCTTTTCAATACCTTTTTCCAAATGGGTCCTCAGGCTGCTCTTCGTTCCACACAACTTCTCTCACCTTTTTCCCAAATACTTGACTCTTTGCAACTAAAGAATCCTTTCATACGCAATTGGATTGACTTACTTTCTTTCTTGCTTGCTGGTGTCAAATCTGATAGTATATTGTCTGCAGAGATGGTACTATATTTCACATATCTCCAATTGCCATTACCACTCATCAACGTGCAATCATTTATTTATATCATTACATTATTTACGACCACAATAACTAGTTTCTATCCTCTCTCATTTTTTTGTGCAGATAGATTATTAACAGTGTGCATAACACATAAATCTCTAAAGGGACTTTTGTTAAATTTTGATTCCTGTTGTTTACTTAGAGACAGTAGTAGACTAATTGACCAATTTCATTTCTTAAAAATCACCTAAAAGCAGCAGTTAAATGGATAGAAAACTAACGAAATAGTGCTGGTTGAAACATTAGTGAAACGTCATTGCTAATATTCTATTGATGACAAAACAGTTGCTCTCCCTTCCCTCAGGTTTACATGTTTGCAGAATGGTACAAACCAGGGGGCTGTCTTGAGTACCCCCTTGATGGAGCTGCAGGTATTGTTGATGCTCTTGTACGAGGACTAGAGAAGTTTGGTGGGCGGATTTCTCTTCAAAGTCACGTGGAAAAGATTGTTGTTGAAAATGACAGAGCCATTGGAGTGAAGCTGAGAAGCGGCCAAGTAAGTATATTAATTTTGAATGAATATTGATAAGAAAATATCGACTTTATCATGTGTTATGCTTGCTGCAGTTCGTACATGCCAAGAAGGCTGTTGTGAGCAATGCATCAATGTGGGATACTTTAAAATTGCTCCCTCAAGAAGTTGTTCCAAAGTCTTACTCAAATAGGATTAACACGACTAGTCAGTGTGAATCTTTCATGCATCTCCATTTGGGATTTGATGCTGAGGTGAGGTTTTGGTGATTAATTTTATTTAGTCTTTCACTTGCCATGCATCTGTTTGAAGTATTCAACATCGAGTGAGCAGGGTATACGCAGCGATCTAGGAATTCATCATATAGTTGTAAATGATTGGGAAAGAGGAGTTGACGCAGATCAGAATGTTGTGTTGATATCAGTTCCTAGTGTACTTACTCCTAATCTGGCACCTACTGGGAAACATGTGTTACATGCTTATCTTCCAGGAACTGAACCATTTGAGTTGTGGGAAGGACTTGATCGTAAGAGTGCCGAATACAGAAATCTTAAAGCTCAAAGATCAGAGGTATATATGAAATTGAATGAATGAATAACAGCAAGCAGCGTATATGCGTTTTTAATTAATGATTATTATTTCAAACAACAAATAGATAATGTGGAGAGCAGTGGAGAGAGCAGTGGGACCAGGATTCAGCAGGGAGAAATGTGAAGTGAAGTTAGTTGGAAGTCCACTCACACATCAAAGGTTTCTTCGGAGGAACAGAGGAACATATGGACCAGCTATACAAGCTGGTACAGATACCTTTCCTGGACATTCAACTCCAATTCCACACCTTTATTGTTGTGGAGACTCCACTTTTCCTGGCATTGGCGTCCCTGCAGTTGCTGCCAGTGGTGCAATTGTAGCTAATTCTCTAGTTTCAGTGTCTCAGCATTCCCAGCTGCTTGATGCAATTGGAATTTGA

Protein sequence

>MS.gene012800.t1

MRVRRYCSRIDDDHHHSHSNGRIREGGVVVRNSSNKVDETETDVIVIGSGIGGLSCAALLARYEQDVVVFESHDHAGGAAHSFDVKGYKFDSGPSLFSGLQSRGPQANPLAQVLDALGESVPCATYDSWMVHVPEADFLSRIGPTEFLKDLHNYAGPEAVQEWQKLLDAVLPLSTAAMALPPLSVRGDFGVLYTAAARYAPSLFNTFFQMGPQAALRSTQLLSPFSQILDSLQLKNPFIRNWIDLLSFLLAGVKSDSILSAEMVYMFAEWYKPGGCLEYPLDGAAGIVDALVRGLEKFGGRISLQSHVEKIVVENDRAIGVKLRSGQFVHAKKAVVSNASMWDTLKLLPQEVVPKSYSNRINTTSQCESFMHLHLGFDAEGIRSDLGIHHIVVNDWERGVDADQNVVLISVPSVLTPNLAPTGKHVLHAYLPGTEPFELWEGLDRKSAEYRNLKAQRSEIMWRAVERAVGPGFSREKCEVKLVGSPLTHQRFLRRNRGTYGPAIQAGTDTFPGHSTPIPHLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSQLLDAIGI