AlfalfaGEDB | MS.gene012871

M. sativa cultivar XinJiangDaYe / MS.gene012871

KEGG: K10570
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00400.35

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012871.t1	XP_013461789.1	98.6	441	6	0	1	441	1	441	6.70E-255	889.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012871.t1	Q93ZG3	65.5	449	144	2	4	441	2	450	2.0e-175	616.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012871.t1	A0A072V1E5	98.6	441	6	0	1	441	1	441	4.8e-255	889.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene012871	MS.gene89575	PPI
MS.gene012871	MS.gene37481	PPI
MS.gene012871	MS.gene23970	PPI
MS.gene012871	MS.gene32874	PPI
MS.gene012871	MS.gene036055	PPI
MS.gene012871	MS.gene015076	PPI
MS.gene038078	MS.gene012871	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012871.t1	MTR_3g103170	98.639	441	6	0	1	441	1	441	0.0	910

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012871.t1	AT1G27840	65.479	449	144	2	4	441	2	450	0.0	634
MS.gene012871.t1	AT1G27840	65.333	450	144	3	4	441	2	451	0.0	629
MS.gene012871.t1	AT1G19750	65.854	451	139	4	4	441	2	450	0.0	624
MS.gene012871.t1	AT1G27840	56.347	449	128	4	4	441	2	393	4.96e-180	508
MS.gene012871.t1	AT1G19750	65.672	335	100	4	120	441	1	333	3.91e-158	450
MS.gene012871.t1	AT2G16780	28.421	190	115	7	60	245	183	355	4.54e-11	64.7
MS.gene012871.t1	AT5G23430	27.481	131	92	2	99	229	10	137	7.06e-11	65.1
MS.gene012871.t1	AT5G23430	27.481	131	92	2	99	229	10	137	7.18e-11	65.1
MS.gene012871.t1	AT5G23430	27.481	131	92	2	99	229	10	137	7.18e-11	65.1

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Find 94 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATCAAAGACAGAGAATC+CGG	0.439433	3.3:-85213983	MS.gene012871:CDS
AACGCACGTACGATACTACG+TGG	0.751494	3.3:-85209678	MS.gene012871:CDS
AACTGGCAGGCTATCATCTA+AGG	0.289330	3.3:-85212021	MS.gene012871:CDS
AAGAAAGTTGCCAATGGAAG+TGG	0.491768	3.3:-85212059	MS.gene012871:CDS
AAGATTGAATAGAACCTGAG+TGG	0.761909	3.3:+85213589	None:intergenic
AAGGTCAATTGCCGATGAAA+TGG	0.525899	3.3:-85208549	MS.gene012871:intron
AATCAATCTCAGACGCAGCT+TGG	0.504418	3.3:-85212279	MS.gene012871:CDS
AATGGGTCTTGATTACCGGG+GGG	0.785902	3.3:-85212359	MS.gene012871:CDS
AATGGTCTGCTTCAAGTGAA+TGG	0.451347	3.3:-85212377	MS.gene012871:CDS
AATTAATTGCGCCTTTGTGA+GGG	0.509005	3.3:+85213873	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGAATGAACCCTATG+AGG	-	chr3.3:85213428-85213447	MS.gene012871:intron	30.0%
AAACAGATTCTACCATTTGA+CGG	+	chr3.3:85212864-85212883	None:intergenic	30.0%
AAAGAAAATGGAAGAGATAC+AGG	-	chr3.3:85213056-85213075	MS.gene012871:intron	30.0%
AACTAATCGTCTTACTATGT+AGG	+	chr3.3:85213535-85213554	None:intergenic	30.0%
AATTGCTATAGGTAATCAAG+GGG	-	chr3.3:85210896-85210915	MS.gene012871:intron	30.0%
ACATCCAATGCTTAACATAA+CGG	-	chr3.3:85209794-85209813	MS.gene012871:intron	30.0%
ACGATAGACAAATTCTTGTA+TGG	-	chr3.3:85213836-85213855	MS.gene012871:CDS	30.0%
AGAAAAATAGAACACAGTAG+AGG	-	chr3.3:85211438-85211457	MS.gene012871:intron	30.0%
AGAAGAGAAGAAATACATCA+GGG	-	chr3.3:85211391-85211410	MS.gene012871:intron	30.0%
AGACATATACAGCAAAAGAT+TGG	+	chr3.3:85211933-85211952	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	85208418	85214020	85208418	ID=MS.gene012871
chr3.3	mRNA	85208418	85214020	85208418	ID=MS.gene012871.t1;Parent=MS.gene012871
chr3.3	exon	85213604	85214020	85213604	ID=MS.gene012871.t1.exon1;Parent=MS.gene012871.t1
chr3.3	CDS	85213604	85214020	85213604	ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1
chr3.3	exon	85213109	85213268	85213109	ID=MS.gene012871.t1.exon2;Parent=MS.gene012871.t1
chr3.3	CDS	85213109	85213268	85213109	ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1
chr3.3	exon	85212239	85212417	85212239	ID=MS.gene012871.t1.exon3;Parent=MS.gene012871.t1
chr3.3	CDS	85212239	85212417	85212239	ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1
chr3.3	exon	85211901	85212111	85211901	ID=MS.gene012871.t1.exon4;Parent=MS.gene012871.t1
chr3.3	CDS	85211901	85212111	85211901	ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1
chr3.3	exon	85209962	85210116	85209962	ID=MS.gene012871.t1.exon5;Parent=MS.gene012871.t1
chr3.3	CDS	85209962	85210116	85209962	ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1
chr3.3	exon	85209632	85209721	85209632	ID=MS.gene012871.t1.exon6;Parent=MS.gene012871.t1
chr3.3	CDS	85209632	85209721	85209632	ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1
chr3.3	exon	85208550	85208621	85208550	ID=MS.gene012871.t1.exon7;Parent=MS.gene012871.t1
chr3.3	CDS	85208550	85208621	85208550	ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1
chr3.3	exon	85208418	85208459	85208418	ID=MS.gene012871.t1.exon8;Parent=MS.gene012871.t1
chr3.3	CDS	85208418	85208459	85208418	ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1

Gene Sequence

>MS.gene012871

ATGGATACGTGGAAGAACATCAAAGACAGAGAATCCGGAAAATTGCGTCCAAATTCCTTCGCTAATCGCATAAAATCAAATCGAATTTCACAACTCGAGTTATCAAATCACAAAGAACTCGTTTCCCCTCACAAAGGCGCAATTAATTCCCTTCAAATTGATTTAACAGAAGGAAGATATCTGTTATCTGCTGCGTCAGATGCATCCGTAGCGGTTTACGACGTTCACCGGCCGAGCGATTTCGACGGAGATGGTTTGATAACGAAACACAATTGTTTATTTGTTGTTGATAAGCAACACCAATTAGCTCATAAATATGCTGTATCTTCAGCTATTTGGTATCCCATTGATACTGGTTTATTCATCACTGGTTCTTATGATCATCATGTTAATGTTTGGGACACTAACACCACTCAGGTTCTATTCAATCTTATCATCGTCATACTGATAATATTTTTGGATTTTGTCGAGTAGAATTGATTTAGAAATGATTATGACATATTTGGATGTTGTCGAGTAGAATTGATTTTGCTTCCGTAATTGATTCTAATTTAAATGTATTAATGAAACCACCTTTGATGAATGTATCTGCATGATTAACTATAAATTTAACTCATTTTAGTTAGAATCAATATTGGCAGGTCAATTCATTCGAAATCAATTTTTATCACCGTAGAACTAGTGTTAGAGACACACTACAGTAATGATTCATTTGACACTCAAATTTAACTCCTATTGTAAATTGATTGTAGGTGGTGGTGAATTTCAAAATGCCTGGAAAGGTGTATAAGACTGCAATGTCTACATTGTCAACATCTCATACGCTTATTGCTGCTGGAACTGAGGATGTACAAGTTCGTCTTTGTGATATTGCTTCTGGTGCATTTGCTCATACTTTGTCTGGTCATCGTGGTATGTCATTTCGATGCTCTCATTTCAACTTCCAACATACTCATTTGTGTGGTCTATTCTATTTGACAAGAGTCCGTAGTTTTTTGTTTTGTAAACCAAGTTTAGACTAGTAAAGACCGTGTCTAAGATTAAACAGATAAGGAAAAAAAAAAAAATAGTGGGAAATAAATGTGTGAAACTGTGTTTCGTAAGTGGAAATCGTCCTTAGAACTGGGGGTGCATGCCACCCCCTAAAGTTTTTAGAATAGTATACGATATGAGTTATAGTATAAAATTTACCCTTCAGCATAATGATTAGCACTATACGAACCAGCAACATGTAGGTTTGAGTGCCGGAGTTACTATTTTTGCATCTCCTTTATTTTTTTCCTTGTGCAAGGATAAAAAATAAGACATCAAAATGCAAAATATAAGAATCAACCCCTTAATTCTGGTGAAAACAAAGGTGCTAAACCACTGTGCCAACATCCAATGCTTAACATAACGGCGCTATAATTTTTTTTATTACATGCATGTATATTTTTGGCCCACTCGTGAAATATGTCAAGCTCCACCACTGATAGGTGACTAGATAGAATAGAATTATGACATACTGGGAACTTAGGTGTCTATGTGTGCGATTGTTCTTATTGCATGATGTTATGTATTGTCGAAAGGAGGTTTTTCCATCACATGATTTCTTTTATGTCAGATGGTGTAATGACTGTTGAATGGTCTGCTTCAAGTGAATGGGTCTTGATTACCGGGGGGTGTGATGGTGCAATACGTTTTTGGGACATAAGGCGTGCTGGTTGTTTCCAAGTTTTAAATCAATCTCAGACGCAGCTTGGACGACGCCCACCTCTACTCAAACGTTCCGTGCTAACTAAGGTTTTTTTTAGTTTAGCTTATTCCTTGTTCGTAATTTGCGAGTCTGAATAGTGATTGTTTCACCAAGTACTTAACTTAAATTCAAGTATTTAGGCTTGTTATAATCCTAAAGCCTTATTACTCACAGGAATCAAATACAAAAATGCGTCCTGGACAGAAGAAAGTTGCCAATGGAAGTGGCAGTGGACATCTGCCAACTGGCAGGCTATCATCTAAGGGTCCAATGAAGCAGAAATTACATCCAGGAATGATTTCTACTCAGGATCGTGCAACTGCTCATTATGGTGCTGTGACAGGATTGAAAGTAACAGAGGATGGCATGTATCTCTTAAGTGCAGGTTGTTTGTTTATTATTTACCATACTAGTCAATAGACCCATGTTAGCACAGTGTCTCATACAAGGCTGCATAAATTTAAAAAACATTTTGTTTTGAAATGTGTAATCATAATTTAAGTTAAGACATTACAAGCCATATCCAAAAAAGTTAGACATTACGAGTTCAAGCGGAAAACTATTATTGTTATTATTATTATTATTATTTTTAAAATGATCTAAATTTTAATCTTTCAAACGTTCTATGTTTTACGAATATAAAAGACACACCTGCTAATACTGAACATATTATGACAAATTGCTTTCAAATATTTTCACAAGGAAATACTTTAACTACCTTCTGTCAATCTGCAATGCATTCAAATTGCTATAGGTAATCAAGGGGATGCCTTTGCTTTATATCATCGACATGTGTCAAACACCGACACAACACCGACACATGTTATTACATTCAAATAATTCATTATCTCATATTATTACCGGTGTCATGTCCGGTGTTTGTGTATGCCAGTGCTTCATAGTGCCTTCAGGCATATCTTATATTTAACGGTCTTCGATTATTTTCCGCTTCTGTACAATGAATATTCTAAAAACCAATAAATTCTCAAAACCAATCACTAGACATAAAGCATGGTCTTGGACAGATTCCTTTTGCTGAATATAATTAGTTTGTACACTGAAAGTTGAAATCTCTTCTCTGAAAGTCATAGGCAGACTTTATTTGGACCCTAAAAATTTTAACCTGGAAACCGTATAGACACAGTGAATCGTCAATTAGTTTATTTCCAATTGGTAATATAATTGAGGTTCTGAAAAGTTGGTTTTATTTTTGAAAAATAATATTATCAATATTAAATAGAAGAGAAGAAATACATCAGGGTGAGGTAGAGAAGTGGTGTATGTGAGAAAAATAGAACACAGTAGAGGCTGAGAAGCTGTATTTGAGAGTGTCATCCAAATGAGATATAAAAAAAAAAAATATGCACAACAGTCTTGCACTCAATGGAACTGGCTAAGGTACAGAATTGCCTTATAGATGTATATCCCTATATAAATATGATTTAACCTATATTATATTTAACAAAAGCTTGGACATCACATATGGAAAAATATATTATCATACATTGATTCCTGACGGGGGGGAAGGGTTGAAGAGAGTAGTCTGCAACATAAACATGATAGTAGAAGACAAATCATTGGTGATTTCTTTCCTCAACTGTAAATTAAGGGTTGAAGAGAGTAGTCCGTGAAATAAACATAGTAGAAGAGAGTAGTCCACAAAATAAACATGATAGTAGAAGACAAATCATCGGTGATGTCTTTCCTTAACTGTAAATTAATATTTTGACGGGACTGCAACAGAGGGCAGATAAGTATTAGGTACCTATAGCAATAGCCAATCTTTTGCTGTATATGTCTCCTTGTGAATGTTTATGACCAAAACAACAATTAGTAGTCACTCAAGAGGCAGCGAGCTTTGACTGGTAACAATACAAAAATGCTAAGAGCAGCTTAGAAGAAATAGTTGTAATTAAAAATTAGATTAGCTAGAAATATAATTTGTATCTTAAATAAAATTTGATTTTTAAAGTGATTCTAATTTTAACTTAATTGAATGCGAATAATCATTTGAAAAAGATATTATACAATAATATATTATGGAATTATTAGAAGCGTCTATGCAATGATAATTTGAAATAGCTGTTACCTGTTTTCTTGTAATGCATCAAAATGTGTTCATATCTAAGTTATTTTACTCTCACTCATTGATGTTCTGTCTGATGACAGGGTCTGATTCAAGATTGAGATTGTGGGATGTTGAGTCAGGCTGCGACACACTTGTGAACTTCGAAACAGTCCGCTTGCAAACAAGCAAACCTATTCAATTAGCTACAACTCAAGACTCGACCGTCGTTTTTGTTCCATGCATGAGGGTTGTGAAAGTAAGTGGTTCGTTTAGTTTATTACAATTTTTAACTTTAAAATTAGCCGTTGTTAAAAAAAAACCTTTAAAATTAGCCGCACAAATACAAAAGATACTTTTCTTTTGAAGCATCAAAAGAGCTAATCAAATATAAAGAAGTGCACAAGGGTACTCAAACCCAATTCCACCCCTCAACCGCTAAGTAACTAATTTCTAAGAATACAATGAGGAACACTGATCTCACTTCTGGATTATTCAGGCATTTGATATGTGGTCTGGGAACGCACGTACGATACTACGTGGACACTATGAATCTATAAACTCCTGCTGGTTTAATCAACAAGATCAGGTATGTTCAACAGCTGGTTATTCATAATTTTTTTCCTGCTCTGTTATAAGTGGTCCGTCAAATGGTAGAATCTGTTTGGTTGTCAGGTCTGGCTGTTTGGTTTGTCAGGTCCGGGATGTTCATTTTACAGTTAAACATATTTTTTTCCCTTCTCTAATCAACTCATACGGCGTATGGATGACCTTACTTTCCTTCCCTTTTTTCCTGTTTACATTTTATCCTCTTATTCTAATTTCACTGTTTAATAGAAAAGAAAATGGAAGAGATACAGGCACAAAGTTCATTATAAATTGTGTGTGCATGTAATCTTCAGTCCTTTTTCTTCTTTAATCGGACTAGTATCATTACTAAGATTAGAGACTTTAATGAGGATTTTCTAAATTATGATCGTTCTATAAACATTTTTAATGATGGAACTAAATTTTACAATAAAAAGGAAAAGAAAAGAAAAAAGTAGAAGCAATTTATGGCATAAATCAACTTGAAACCGATCAATGGTCTGAGATGAGCTTTACTACCCCACCACCGCCACAACAACCTACTGATTTTACCGAGAAATCATTCATTATCAATGCTTGTTCTTTCAAAGTCATTGCTTGTCTAGTTGGTATTCTTTTGGTAAAAATTGAATGAACCCTATGAGGAAATATTTTGATGTCTTATACAGATGTCCAATAAGAATAGAATTTATGGTAGTTATTTTGAAAAGGCAGTTATAAAATAGGCCTACATAGTAAGACGATTAGTTCTTATTGGATGACAGTGCAAAACTATTTTACACCGTTGGTGCATAGCCATTAAACTCATAATTTATTCCAGGATGAAATAACAACCAGTAAAGCAGCATTAGCCTTGGATATGGATCTCAATTTATGACATAAATTTGCTATATATTATGATATCATTCTCCAACTCTATTGGATTGAAGTATTGAACAATGTTTGATACGTAATACTTGCTCAGAAAACCCGTATCTCATGCACTTTTTAATGATTTTGTTATTGCCACAGGAGTTGTACACAGGTGGAAACGATAGACAAATTCTTGTATGGTCACCTGCAAGGTCAATTGCCGATGAAATGGTGCACTCTTTGAAACAATTCATTGAGATTATTTTATATATGCATGGTGAAAGCACCTTCCAATATGTCTGACCTTGTGATAAACTGCAGGGCGAAGGAGATCCCGACGACCAGGATAGCTGGAGTAACTGA

Protein sequence

>MS.gene012871.t1

MDTWKNIKDRESGKLRPNSFANRIKSNRISQLELSNHKELVSPHKGAINSLQIDLTEGRYLLSAASDASVAVYDVHRPSDFDGDGLITKHNCLFVVDKQHQLAHKYAVSSAIWYPIDTGLFITGSYDHHVNVWDTNTTQVVVNFKMPGKVYKTAMSTLSTSHTLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRRAGCFQVLNQSQTQLGRRPPLLKRSVLTKESNTKMRPGQKKVANGSGSGHLPTGRLSSKGPMKQKLHPGMISTQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRLRLWDVESGCDTLVNFETVRLQTSKPIQLATTQDSTVVFVPCMRVVKAFDMWSGNARTILRGHYESINSCWFNQQDQELYTGGNDRQILVWSPARSIADEMGEGDPDDQDSWSN