Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012871.t1 | XP_013461789.1 | 98.6 | 441 | 6 | 0 | 1 | 441 | 1 | 441 | 6.70E-255 | 889.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012871.t1 | Q93ZG3 | 65.5 | 449 | 144 | 2 | 4 | 441 | 2 | 450 | 2.0e-175 | 616.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012871.t1 | A0A072V1E5 | 98.6 | 441 | 6 | 0 | 1 | 441 | 1 | 441 | 4.8e-255 | 889.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012871 | MS.gene89575 | PPI |
| MS.gene012871 | MS.gene37481 | PPI |
| MS.gene038078 | MS.gene012871 | PPI |
| MS.gene012871 | MS.gene23970 | PPI |
| MS.gene012871 | MS.gene32874 | PPI |
| MS.gene012871 | MS.gene036055 | PPI |
| MS.gene012871 | MS.gene015076 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012871.t1 | MTR_3g103170 | 98.639 | 441 | 6 | 0 | 1 | 441 | 1 | 441 | 0.0 | 910 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012871.t1 | AT1G27840 | 65.479 | 449 | 144 | 2 | 4 | 441 | 2 | 450 | 0.0 | 634 |
| MS.gene012871.t1 | AT1G27840 | 65.333 | 450 | 144 | 3 | 4 | 441 | 2 | 451 | 0.0 | 629 |
| MS.gene012871.t1 | AT1G19750 | 65.854 | 451 | 139 | 4 | 4 | 441 | 2 | 450 | 0.0 | 624 |
| MS.gene012871.t1 | AT1G27840 | 56.347 | 449 | 128 | 4 | 4 | 441 | 2 | 393 | 4.96e-180 | 508 |
| MS.gene012871.t1 | AT1G19750 | 65.672 | 335 | 100 | 4 | 120 | 441 | 1 | 333 | 3.91e-158 | 450 |
| MS.gene012871.t1 | AT2G16780 | 28.421 | 190 | 115 | 7 | 60 | 245 | 183 | 355 | 4.54e-11 | 64.7 |
| MS.gene012871.t1 | AT5G23430 | 27.481 | 131 | 92 | 2 | 99 | 229 | 10 | 137 | 7.06e-11 | 65.1 |
| MS.gene012871.t1 | AT5G23430 | 27.481 | 131 | 92 | 2 | 99 | 229 | 10 | 137 | 7.18e-11 | 65.1 |
| MS.gene012871.t1 | AT5G23430 | 27.481 | 131 | 92 | 2 | 99 | 229 | 10 | 137 | 7.18e-11 | 65.1 |
Find 94 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCGATTAGCGAAGGAATT+TGG | 0.195129 | 3.3:+85213950 | None:intergenic |
| ATGCTGTATCTTCAGCTATT+TGG | 0.204367 | 3.3:-85213682 | MS.gene012871:CDS |
| CAGCATATTTATGAGCTAAT+TGG | 0.265136 | 3.3:+85213699 | None:intergenic |
| ATGATCATCATGTTAATGTT+TGG | 0.280560 | 3.3:-85213622 | MS.gene012871:CDS |
| AACTGGCAGGCTATCATCTA+AGG | 0.289330 | 3.3:-85212021 | MS.gene012871:CDS |
| CGTCTTTGTGATATTGCTTC+TGG | 0.295957 | 3.3:-85213141 | MS.gene012871:CDS |
| GGATGTAATTTCTGCTTCAT+TGG | 0.303704 | 3.3:+85211996 | None:intergenic |
| TGATCATCATGTTAATGTTT+GGG | 0.326481 | 3.3:-85213621 | MS.gene012871:CDS |
| GCAGTCTTATACACCTTTCC+AGG | 0.331614 | 3.3:+85213225 | None:intergenic |
| ATTTGGTATCCCATTGATAC+TGG | 0.339602 | 3.3:-85213665 | MS.gene012871:CDS |
| TCATCGGCAATTGACCTTGC+AGG | 0.342730 | 3.3:+85208554 | None:intergenic |
| AGTGAATGGGTCTTGATTAC+CGG | 0.350685 | 3.3:-85212363 | MS.gene012871:CDS |
| GCATTTGCTCATACTTTGTC+TGG | 0.353584 | 3.3:-85213117 | MS.gene012871:CDS |
| GATCGTGCAACTGCTCATTA+TGG | 0.366149 | 3.3:-85211954 | MS.gene012871:CDS |
| TCTGAGATTGATTTAAAACT+TGG | 0.377456 | 3.3:+85212289 | None:intergenic |
| CAGGCATTTGATATGTGGTC+TGG | 0.378935 | 3.3:-85209702 | MS.gene012871:CDS |
| TGAGTTGTAGCTAATTGAAT+AGG | 0.379923 | 3.3:+85210005 | None:intergenic |
| TCCTGAGTAGAAATCATTCC+TGG | 0.383793 | 3.3:+85211975 | None:intergenic |
| GATGAATAAACCAGTATCAA+TGG | 0.420168 | 3.3:+85213655 | None:intergenic |
| CTTCTGTTAAATCAATTTGA+AGG | 0.421628 | 3.3:+85213849 | None:intergenic |
| CTCAGTTACTCCAGCTATCC+TGG | 0.425023 | 3.3:+85208417 | None:intergenic |
| TTGGCAACTTTCTTCTGTCC+AGG | 0.433328 | 3.3:+85212068 | None:intergenic |
| AACATCAAAGACAGAGAATC+CGG | 0.439433 | 3.3:-85213983 | MS.gene012871:CDS |
| CTGATTCAAGATTGAGATTG+TGG | 0.440434 | 3.3:-85210091 | MS.gene012871:CDS |
| CAAACGTTCCGTGCTAACTA+AGG | 0.443106 | 3.3:-85212238 | MS.gene012871:intron |
| ATCCCGACGACCAGGATAGC+TGG | 0.447196 | 3.3:-85208427 | MS.gene012871:CDS |
| AATGGTCTGCTTCAAGTGAA+TGG | 0.451347 | 3.3:-85212377 | MS.gene012871:CDS |
| GATACTGGTTTATTCATCAC+TGG | 0.452740 | 3.3:-85213650 | MS.gene012871:CDS |
| GGCAGTGGACATCTGCCAAC+TGG | 0.453300 | 3.3:-85212038 | MS.gene012871:CDS |
| CTGGTTTAATCAACAAGATC+AGG | 0.457234 | 3.3:-85209631 | MS.gene012871:intron |
| TTATTCAGGCATTTGATATG+TGG | 0.464525 | 3.3:-85209707 | MS.gene012871:intron |
| CTCCAGCTATCCTGGTCGTC+GGG | 0.468697 | 3.3:+85208425 | None:intergenic |
| TAGCGGTTTACGACGTTCAC+CGG | 0.471610 | 3.3:-85213790 | MS.gene012871:CDS |
| ACGATAGACAAATTCTTGTA+TGG | 0.472177 | 3.3:-85208580 | MS.gene012871:CDS |
| ATGAATAAACCAGTATCAAT+GGG | 0.473954 | 3.3:+85213656 | None:intergenic |
| CTTCAAATTGATTTAACAGA+AGG | 0.481429 | 3.3:-85213848 | MS.gene012871:CDS |
| CTCCGTCGAAATCGCTCGGC+CGG | 0.482142 | 3.3:+85213771 | None:intergenic |
| TTCTGTTAAATCAATTTGAA+GGG | 0.489653 | 3.3:+85213850 | None:intergenic |
| AAGAAAGTTGCCAATGGAAG+TGG | 0.491768 | 3.3:-85212059 | MS.gene012871:CDS |
| TCTCATACGCTTATTGCTGC+TGG | 0.491892 | 3.3:-85213183 | MS.gene012871:CDS |
| GTTGCCAATGGAAGTGGCAG+TGG | 0.492604 | 3.3:-85212053 | MS.gene012871:CDS |
| CAAAGAGTGCACCATTTCAT+CGG | 0.496860 | 3.3:+85208538 | None:intergenic |
| AATCAATCTCAGACGCAGCT+TGG | 0.504418 | 3.3:-85212279 | MS.gene012871:CDS |
| CCGAGCGATTTCGACGGAGA+TGG | 0.504812 | 3.3:-85213767 | MS.gene012871:CDS |
| GCTCATTATGGTGCTGTGAC+AGG | 0.504885 | 3.3:-85211942 | MS.gene012871:CDS |
| AATTAATTGCGCCTTTGTGA+GGG | 0.509005 | 3.3:+85213873 | None:intergenic |
| CGAAGGAGATCCCGACGACC+AGG | 0.513845 | 3.3:-85208435 | MS.gene012871:CDS |
| ATGGTCTGCTTCAAGTGAAT+GGG | 0.514760 | 3.3:-85212376 | MS.gene012871:CDS |
| AGGCATTTGATATGTGGTCT+GGG | 0.514949 | 3.3:-85209701 | MS.gene012871:CDS |
| AGATTGTGGGATGTTGAGTC+AGG | 0.515425 | 3.3:-85210077 | MS.gene012871:CDS |
| GTGGTGAATTTCAAAATGCC+TGG | 0.516745 | 3.3:-85213243 | MS.gene012871:CDS |
| AAGGTCAATTGCCGATGAAA+TGG | 0.525899 | 3.3:-85208549 | MS.gene012871:intron |
| GTGGACATCTGCCAACTGGC+AGG | 0.526487 | 3.3:-85212034 | MS.gene012871:CDS |
| GAATTAATTGCGCCTTTGTG+AGG | 0.526750 | 3.3:+85213872 | None:intergenic |
| ATCTTGTTGATTAAACCAGC+AGG | 0.528118 | 3.3:+85209635 | None:intergenic |
| TCCAGGAATGATTTCTACTC+AGG | 0.535159 | 3.3:-85211976 | MS.gene012871:CDS |
| ATGAATCTATAAACTCCTGC+TGG | 0.535705 | 3.3:-85209650 | MS.gene012871:CDS |
| ATGTCCACTGCCACTTCCAT+TGG | 0.540411 | 3.3:+85212049 | None:intergenic |
| GTGAATGGGTCTTGATTACC+GGG | 0.543515 | 3.3:-85212362 | MS.gene012871:CDS |
| ACTTTCACAACCCTCATGCA+TGG | 0.546812 | 3.3:+85209960 | None:intergenic |
| GGCATGTATCTCTTAAGTGC+AGG | 0.549168 | 3.3:-85211900 | MS.gene012871:intron |
| AGCACGGAACGTTTGAGTAG+AGG | 0.550967 | 3.3:+85212246 | None:intergenic |
| ACTCCAGCTATCCTGGTCGT+CGG | 0.569326 | 3.3:+85208424 | None:intergenic |
| TTCTTGTATGGTCACCTGCA+AGG | 0.573554 | 3.3:-85208568 | MS.gene012871:CDS |
| TGATTCAAGATTGAGATTGT+GGG | 0.573902 | 3.3:-85210090 | MS.gene012871:CDS |
| TAGGTTTGCTTGTTTGCAAG+CGG | 0.575957 | 3.3:+85210024 | None:intergenic |
| CCATCTCCGTCGAAATCGCT+CGG | 0.578915 | 3.3:+85213767 | None:intergenic |
| TGTGATAAACTGCAGGGCGA+AGG | 0.586427 | 3.3:-85208452 | MS.gene012871:intron |
| ATGAAGCAGAAATTACATCC+AGG | 0.589532 | 3.3:-85211993 | MS.gene012871:CDS |
| ACGGAACGTTTGAGTAGAGG+TGG | 0.594941 | 3.3:+85212249 | None:intergenic |
| TTGCCACAGGAGTTGTACAC+AGG | 0.597998 | 3.3:-85208608 | MS.gene012871:intron |
| GGATTGAAAGTAACAGAGGA+TGG | 0.605564 | 3.3:-85211921 | MS.gene012871:CDS |
| GCTTATTGCTGCTGGAACTG+AGG | 0.609754 | 3.3:-85213175 | MS.gene012871:CDS |
| ATTAATTGCGCCTTTGTGAG+GGG | 0.611011 | 3.3:+85213874 | None:intergenic |
| GGACAGAAGAAAGTTGCCAA+TGG | 0.611679 | 3.3:-85212065 | MS.gene012871:CDS |
| ATGGTGTAATGACTGTTGAA+TGG | 0.628070 | 3.3:-85212395 | MS.gene012871:CDS |
| ACTGGCAGGCTATCATCTAA+GGG | 0.630654 | 3.3:-85212020 | MS.gene012871:CDS |
| CACCGGCCGAGCGATTTCGA+CGG | 0.632724 | 3.3:-85213773 | MS.gene012871:CDS |
| GTGAACGTCGTAAACCGCTA+CGG | 0.633953 | 3.3:+85213793 | None:intergenic |
| CCACAGGAGTTGTACACAGG+TGG | 0.635650 | 3.3:-85208605 | MS.gene012871:intron |
| GAATTTCAAAATGCCTGGAA+AGG | 0.640053 | 3.3:-85213238 | MS.gene012871:CDS |
| TTAGATGATAGCCTGCCAGT+TGG | 0.643193 | 3.3:+85212023 | None:intergenic |
| GAATGGGTCTTGATTACCGG+GGG | 0.646184 | 3.3:-85212360 | MS.gene012871:CDS |
| TTGGGACACTAACACCACTC+AGG | 0.656420 | 3.3:-85213603 | MS.gene012871:intron |
| CATACTTTGTCTGGTCATCG+TGG | 0.668716 | 3.3:-85213108 | MS.gene012871:intron |
| CGGAACGTTTGAGTAGAGGT+GGG | 0.672074 | 3.3:+85212250 | None:intergenic |
| GACAGGATTGAAAGTAACAG+AGG | 0.681612 | 3.3:-85211925 | MS.gene012871:CDS |
| TGCGTCAGATGCATCCGTAG+CGG | 0.693318 | 3.3:-85213807 | MS.gene012871:CDS |
| ATGCTCCGAATATGGATACG+TGG | 0.705582 | 3.3:-85214009 | None:intergenic |
| GAACTCGTTTCCCCTCACAA+AGG | 0.708363 | 3.3:-85213884 | MS.gene012871:CDS |
| AACGCACGTACGATACTACG+TGG | 0.751494 | 3.3:-85209678 | MS.gene012871:CDS |
| TGAATGGGTCTTGATTACCG+GGG | 0.757650 | 3.3:-85212361 | MS.gene012871:CDS |
| AAGATTGAATAGAACCTGAG+TGG | 0.761909 | 3.3:+85213589 | None:intergenic |
| AATGGGTCTTGATTACCGGG+GGG | 0.785902 | 3.3:-85212359 | MS.gene012871:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATTAATTTACAGTTA+AGG | + | chr3.3:85211860-85211879 | None:intergenic | 10.0% |
| !! | ATTTAAATTAGAATCAATTA+CGG | + | chr3.3:85208955-85208974 | None:intergenic | 10.0% |
| !!! | AACTAAATTTTACAATAAAA+AGG | - | chr3.3:85213221-85213240 | MS.gene012871:CDS | 10.0% |
| !!! | TTTTTTTTTTATATCTCATT+TGG | + | chr3.3:85211491-85211510 | None:intergenic | 10.0% |
| !! | AAGGAAAAAAAAAAAAATAG+TGG | - | chr3.3:85209468-85209487 | MS.gene012871:intron | 15.0% |
| !! | AGGAAAAAAAAAAAAATAGT+GGG | - | chr3.3:85209469-85209488 | MS.gene012871:intron | 15.0% |
| !! | AGGTTAAATCATATTTATAT+AGG | + | chr3.3:85211582-85211601 | None:intergenic | 15.0% |
| !! | GGTTAAATCATATTTATATA+GGG | + | chr3.3:85211581-85211600 | None:intergenic | 15.0% |
| !! | TAACTTAAATTCAAGTATTT+AGG | - | chr3.3:85210271-85210290 | MS.gene012871:intron | 15.0% |
| !! | TATTATATTTAACAAAAGCT+TGG | - | chr3.3:85211603-85211622 | MS.gene012871:intron | 15.0% |
| !!! | ACTGTAAATTAATATTTTGA+CGG | - | chr3.3:85211862-85211881 | MS.gene012871:intron | 15.0% |
| !!! | ATACTATTCTAAAAACTTTA+GGG | + | chr3.3:85209561-85209580 | None:intergenic | 15.0% |
| !!! | ATTTTAGTTAGAATCAATAT+TGG | - | chr3.3:85209033-85209052 | MS.gene012871:intron | 15.0% |
| !!! | GCTTTTGTTAAATATAATAT+AGG | + | chr3.3:85211602-85211621 | None:intergenic | 15.0% |
| !!! | TAAAGGTTTTTTTTTAACAA+CGG | + | chr3.3:85212526-85212545 | None:intergenic | 15.0% |
| !!! | TATACTATTCTAAAAACTTT+AGG | + | chr3.3:85209562-85209581 | None:intergenic | 15.0% |
| !!! | TCTATAAACATTTTTAATGA+TGG | - | chr3.3:85213198-85213217 | MS.gene012871:CDS | 15.0% |
| !! | AAAAAAGTAGAAGCAATTTA+TGG | - | chr3.3:85213254-85213273 | MS.gene012871:intron | 20.0% |
| !! | AAAATGTAAACAGGAAAAAA+GGG | + | chr3.3:85213004-85213023 | None:intergenic | 20.0% |
| !! | AACTAATTATATTCAGCAAA+AGG | + | chr3.3:85211184-85211203 | None:intergenic | 20.0% |
| !! | ACCATAAATTCTATTCTTAT+TGG | + | chr3.3:85213481-85213500 | None:intergenic | 20.0% |
| !! | AGAAATGATTATGACATATT+TGG | - | chr3.3:85208901-85208920 | MS.gene012871:intron | 20.0% |
| !! | CTGTTTAATAGAAAAGAAAA+TGG | - | chr3.3:85213044-85213063 | MS.gene012871:intron | 20.0% |
| !! | GGAATAAATTATGAGTTTAA+TGG | + | chr3.3:85213604-85213623 | None:intergenic | 20.0% |
| !! | GTTTACAAAACAAAAAACTA+CGG | + | chr3.3:85209406-85209425 | None:intergenic | 20.0% |
| !! | TAAAATGTAAACAGGAAAAA+AGG | + | chr3.3:85213005-85213024 | None:intergenic | 20.0% |
| !! | TCATTATCTCATATTATTAC+CGG | - | chr3.3:85210994-85211013 | MS.gene012871:intron | 20.0% |
| !! | TCCAATAAGAATAGAATTTA+TGG | - | chr3.3:85213477-85213496 | MS.gene012871:intron | 20.0% |
| !! | TTAAACTCATAATTTATTCC+AGG | - | chr3.3:85213604-85213623 | MS.gene012871:CDS | 20.0% |
| !! | TTCTGTTAAATCAATTTGAA+GGG | + | chr3.3:85208569-85208588 | None:intergenic | 20.0% |
| !!! | ATTACATGCATGTATATTTT+TGG | - | chr3.3:85209833-85209852 | MS.gene012871:intron | 20.0% |
| !!! | ATTGATAATGAATGATTTCT+CGG | + | chr3.3:85213360-85213379 | None:intergenic | 20.0% |
| !!! | CTGTAAATTAATATTTTGAC+GGG | - | chr3.3:85211863-85211882 | MS.gene012871:intron | 20.0% |
| !!! | GAGATTATTTTATATATGCA+TGG | - | chr3.3:85213913-85213932 | MS.gene012871:CDS | 20.0% |
| !!! | TAATTTCTAAGAATACAATG+AGG | - | chr3.3:85212665-85212684 | MS.gene012871:intron | 20.0% |
| !!! | TACTATTCTAAAAACTTTAG+GGG | + | chr3.3:85209560-85209579 | None:intergenic | 20.0% |
| !!! | TCAATTAGTTTATTTCCAAT+TGG | - | chr3.3:85211304-85211323 | MS.gene012871:intron | 20.0% |
| !!! | TTATGGTAGTTATTTTGAAA+AGG | - | chr3.3:85213494-85213513 | MS.gene012871:intron | 20.0% |
| !!! | TTGAATTTAAGTTAAGTACT+TGG | + | chr3.3:85210265-85210284 | None:intergenic | 20.0% |
| !!! | TTTCCAGGTTAAAATTTTTA+GGG | + | chr3.3:85211263-85211282 | None:intergenic | 20.0% |
| ! | AAAAAAAACCTTAGTTAGCA+CGG | + | chr3.3:85210189-85210208 | None:intergenic | 25.0% |
| ! | AAATTGCTATAGGTAATCAA+GGG | - | chr3.3:85210895-85210914 | MS.gene012871:intron | 25.0% |
| ! | AACAGTGAAATTAGAATAAG+AGG | + | chr3.3:85213029-85213048 | None:intergenic | 25.0% |
| ! | ACATAAAAGAAATCATGTGA+TGG | + | chr3.3:85209998-85210017 | None:intergenic | 25.0% |
| ! | ACATCAAAATATTTCCTCAT+AGG | + | chr3.3:85213445-85213464 | None:intergenic | 25.0% |
| ! | ACCTACAATCAATTTACAAT+AGG | + | chr3.3:85209152-85209171 | None:intergenic | 25.0% |
| ! | ACCTCAATTATATTACCAAT+TGG | + | chr3.3:85211322-85211341 | None:intergenic | 25.0% |
| ! | AGAATAGAATTATGACATAC+TGG | - | chr3.3:85209903-85209922 | MS.gene012871:intron | 25.0% |
| ! | ATAATATGTTCAGTATTAGC+AGG | + | chr3.3:85210806-85210825 | None:intergenic | 25.0% |
| ! | ATGAATAAACCAGTATCAAT+GGG | + | chr3.3:85208763-85208782 | None:intergenic | 25.0% |
| ! | ATGATCATCATGTTAATGTT+TGG | - | chr3.3:85208794-85208813 | MS.gene012871:intron | 25.0% |
| ! | CAGGCATATCTTATATTTAA+CGG | - | chr3.3:85211061-85211080 | MS.gene012871:intron | 25.0% |
| ! | CATCAAAATATTTCCTCATA+GGG | + | chr3.3:85213444-85213463 | None:intergenic | 25.0% |
| ! | CTTAGAAATTAGTTACTTAG+CGG | + | chr3.3:85212656-85212675 | None:intergenic | 25.0% |
| ! | CTTCTACTATGTTTATTTCA+CGG | + | chr3.3:85211781-85211800 | None:intergenic | 25.0% |
| ! | CTTCTGTTAAATCAATTTGA+AGG | + | chr3.3:85208570-85208589 | None:intergenic | 25.0% |
| ! | GAATAGAATTATGACATACT+GGG | - | chr3.3:85209904-85209923 | MS.gene012871:intron | 25.0% |
| ! | TAAATATAAGATATGCCTGA+AGG | + | chr3.3:85211060-85211079 | None:intergenic | 25.0% |
| ! | TAAGAGGATAAAATGTAAAC+AGG | + | chr3.3:85213013-85213032 | None:intergenic | 25.0% |
| ! | TAAGATTAGAGACTTTAATG+AGG | - | chr3.3:85213155-85213174 | MS.gene012871:CDS | 25.0% |
| ! | TATAGGGATATACATCTATA+AGG | + | chr3.3:85211565-85211584 | None:intergenic | 25.0% |
| ! | TATCTGTTTAATCTTAGACA+CGG | + | chr3.3:85209449-85209468 | None:intergenic | 25.0% |
| ! | TATTGTAAATTGATTGTAGG+TGG | - | chr3.3:85209151-85209170 | MS.gene012871:intron | 25.0% |
| ! | TCCTATTGTAAATTGATTGT+AGG | - | chr3.3:85209148-85209167 | MS.gene012871:intron | 25.0% |
| ! | TGAAAAGGCAGTTATAAAAT+AGG | - | chr3.3:85213509-85213528 | MS.gene012871:intron | 25.0% |
| ! | TGATCATCATGTTAATGTTT+GGG | - | chr3.3:85208795-85208814 | MS.gene012871:intron | 25.0% |
| ! | TTGAATGTAATAACATGTGT+CGG | + | chr3.3:85210969-85210988 | None:intergenic | 25.0% |
| ! | TTGCACAAGGAAAAAAATAA+AGG | + | chr3.3:85209688-85209707 | None:intergenic | 25.0% |
| ! | TTTCCTCAACTGTAAATTAA+GGG | - | chr3.3:85211741-85211760 | MS.gene012871:intron | 25.0% |
| !! | AAATATAAAGAAGTGCACAA+GGG | - | chr3.3:85212604-85212623 | MS.gene012871:intron | 25.0% |
| !! | AAGTATCTTTTGTATTTGTG+CGG | + | chr3.3:85212556-85212575 | None:intergenic | 25.0% |
| !! | ACTATTCTAAAAACTTTAGG+GGG | + | chr3.3:85209559-85209578 | None:intergenic | 25.0% |
| !! | AGTCCTTTTTCTTCTTTAAT+CGG | - | chr3.3:85213118-85213137 | MS.gene012871:CDS | 25.0% |
| !! | ATGATTTCTTTTATGTCAGA+TGG | - | chr3.3:85210002-85210021 | MS.gene012871:CDS | 25.0% |
| !! | ATTAAAAAGTGCATGAGATA+CGG | + | chr3.3:85213778-85213797 | None:intergenic | 25.0% |
| !! | CGTCATACTGATAATATTTT+TGG | - | chr3.3:85208855-85208874 | MS.gene012871:intron | 25.0% |
| !! | CTTCAAATTGATTTAACAGA+AGG | - | chr3.3:85208568-85208587 | MS.gene012871:CDS | 25.0% |
| !! | GTTTCCAGGTTAAAATTTTT+AGG | + | chr3.3:85211264-85211283 | None:intergenic | 25.0% |
| !! | TCCAATTGGTAATATAATTG+AGG | - | chr3.3:85211318-85211337 | MS.gene012871:intron | 25.0% |
| !! | TCTGAGATTGATTTAAAACT+TGG | + | chr3.3:85210130-85210149 | None:intergenic | 25.0% |
| !! | TGCTTTCAAATATTTTCACA+AGG | - | chr3.3:85210833-85210852 | MS.gene012871:intron | 25.0% |
| !! | TGTCTAAGATTAAACAGATA+AGG | - | chr3.3:85209449-85209468 | MS.gene012871:intron | 25.0% |
| !!! | ATGTCTAACTTTTTTGGATA+TGG | + | chr3.3:85210673-85210692 | None:intergenic | 25.0% |
| !!! | CTACTATCATGTTTATTTTG+TGG | + | chr3.3:85211812-85211831 | None:intergenic | 25.0% |
| !!! | GATTGGTTTTGAGAATTTAT+TGG | + | chr3.3:85211130-85211149 | None:intergenic | 25.0% |
| !!! | TTATTTTTTATCCTTGCACA+AGG | + | chr3.3:85209701-85209720 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTTCCTTGTGCA+AGG | - | chr3.3:85209687-85209706 | MS.gene012871:CDS | 25.0% |
| !!! | TTTGTTTTCACCAGAATTAA+GGG | + | chr3.3:85209754-85209773 | None:intergenic | 25.0% |
| AAAATTGAATGAACCCTATG+AGG | - | chr3.3:85213428-85213447 | MS.gene012871:intron | 30.0% | |
| AAACAGATTCTACCATTTGA+CGG | + | chr3.3:85212864-85212883 | None:intergenic | 30.0% | |
| AAAGAAAATGGAAGAGATAC+AGG | - | chr3.3:85213056-85213075 | MS.gene012871:intron | 30.0% | |
| AACTAATCGTCTTACTATGT+AGG | + | chr3.3:85213535-85213554 | None:intergenic | 30.0% | |
| AATTGCTATAGGTAATCAAG+GGG | - | chr3.3:85210896-85210915 | MS.gene012871:intron | 30.0% | |
| ACATCCAATGCTTAACATAA+CGG | - | chr3.3:85209794-85209813 | MS.gene012871:intron | 30.0% | |
| ACGATAGACAAATTCTTGTA+TGG | - | chr3.3:85213836-85213855 | MS.gene012871:CDS | 30.0% | |
| AGAAAAATAGAACACAGTAG+AGG | - | chr3.3:85211438-85211457 | MS.gene012871:intron | 30.0% | |
| AGAAGAGAAGAAATACATCA+GGG | - | chr3.3:85211391-85211410 | MS.gene012871:intron | 30.0% | |
| AGACATATACAGCAAAAGAT+TGG | + | chr3.3:85211933-85211952 | None:intergenic | 30.0% | |
| AGATGCAAAAATAGTAACTC+CGG | + | chr3.3:85209665-85209684 | None:intergenic | 30.0% | |
| AGTCCGATTAAAGAAGAAAA+AGG | + | chr3.3:85213124-85213143 | None:intergenic | 30.0% | |
| ATACTTCAATCCAATAGAGT+TGG | + | chr3.3:85213718-85213737 | None:intergenic | 30.0% | |
| ATATCATTCTCCAACTCTAT+TGG | - | chr3.3:85213705-85213724 | MS.gene012871:CDS | 30.0% | |
| ATGTCGATGATATAAAGCAA+AGG | + | chr3.3:85210925-85210944 | None:intergenic | 30.0% | |
| CAAATTGCTATAGGTAATCA+AGG | - | chr3.3:85210894-85210913 | MS.gene012871:intron | 30.0% | |
| CAATGCATTCAAATTGCTAT+AGG | - | chr3.3:85210885-85210904 | MS.gene012871:intron | 30.0% | |
| CAGCATATTTATGAGCTAAT+TGG | + | chr3.3:85208720-85208739 | None:intergenic | 30.0% | |
| CTTAATTCTGGTGAAAACAA+AGG | - | chr3.3:85209753-85209772 | MS.gene012871:intron | 30.0% | |
| CTTTCCTCAACTGTAAATTA+AGG | - | chr3.3:85211740-85211759 | MS.gene012871:intron | 30.0% | |
| GAATATTCATTGTACAGAAG+CGG | + | chr3.3:85211101-85211120 | None:intergenic | 30.0% | |
| GATAGTAGAAGACAAATCAT+CGG | - | chr3.3:85211711-85211730 | MS.gene012871:intron | 30.0% | |
| GATAGTAGAAGACAAATCAT+TGG | - | chr3.3:85211711-85211730 | MS.gene012871:intron | 30.0% | |
| GATGAATAAACCAGTATCAA+TGG | + | chr3.3:85208764-85208783 | None:intergenic | 30.0% | |
| TAAATTGAGATCCATATCCA+AGG | + | chr3.3:85213660-85213679 | None:intergenic | 30.0% | |
| TAACTGTAAAATGAACATCC+CGG | + | chr3.3:85212920-85212939 | None:intergenic | 30.0% | |
| TAGAAGAGAAGAAATACATC+AGG | - | chr3.3:85211390-85211409 | MS.gene012871:intron | 30.0% | |
| TAGTTAGAATCAATATTGGC+AGG | - | chr3.3:85209037-85209056 | MS.gene012871:intron | 30.0% | |
| TGAGTTGTAGCTAATTGAAT+AGG | + | chr3.3:85212414-85212433 | None:intergenic | 30.0% | |
| TGATGTTATGTATTGTCGAA+AGG | - | chr3.3:85209964-85209983 | MS.gene012871:CDS | 30.0% | |
| TGATTCAAGATTGAGATTGT+GGG | - | chr3.3:85212326-85212345 | MS.gene012871:CDS | 30.0% | |
| TTGATGCATTACAAGAAAAC+AGG | + | chr3.3:85212244-85212263 | None:intergenic | 30.0% | |
| TTTGATTCCTGTGAGTAATA+AGG | + | chr3.3:85210315-85210334 | None:intergenic | 30.0% | |
| TTTGGTCATAAACATTCACA+AGG | + | chr3.3:85211956-85211975 | None:intergenic | 30.0% | |
| ! | AAAAGATTGGCTATTGCTAT+AGG | + | chr3.3:85211920-85211939 | None:intergenic | 30.0% |
| ! | ATTTGTGCGGCTAATTTTAA+AGG | + | chr3.3:85212543-85212562 | None:intergenic | 30.0% |
| ! | CAAATATAAAGAAGTGCACA+AGG | - | chr3.3:85212603-85212622 | MS.gene012871:intron | 30.0% |
| ! | GTAAGACGATTAGTTCTTAT+TGG | - | chr3.3:85213540-85213559 | MS.gene012871:intron | 30.0% |
| ! | TTAAAAAGTGCATGAGATAC+GGG | + | chr3.3:85213777-85213796 | None:intergenic | 30.0% |
| ! | TTGTTTTCACCAGAATTAAG+GGG | + | chr3.3:85209753-85209772 | None:intergenic | 30.0% |
| !! | TAATTGAGGTTCTGAAAAGT+TGG | - | chr3.3:85211332-85211351 | MS.gene012871:intron | 30.0% |
| !! | TATCATACATTGATTCCTGA+CGG | - | chr3.3:85211649-85211668 | MS.gene012871:intron | 30.0% |
| !! | TTATGTTAAGCATTGGATGT+TGG | + | chr3.3:85209794-85209813 | None:intergenic | 30.0% |
| !! | TTGTCTAGTTGGTATTCTTT+TGG | - | chr3.3:85213403-85213422 | MS.gene012871:intron | 30.0% |
| !!! | AATGATTTTGTTATTGCCAC+AGG | - | chr3.3:85213795-85213814 | MS.gene012871:CDS | 30.0% |
| !!! | CTCGTAATGTCTAACTTTTT+TGG | + | chr3.3:85210679-85210698 | None:intergenic | 30.0% |
| !!! | CTTTGTTTTCACCAGAATTA+AGG | + | chr3.3:85209755-85209774 | None:intergenic | 30.0% |
| !!! | GTGACTACTAATTGTTGTTT+TGG | + | chr3.3:85211974-85211993 | None:intergenic | 30.0% |
| AAAAGCTTGGACATCACATA+TGG | - | chr3.3:85211616-85211635 | MS.gene012871:intron | 35.0% | |
| AAAGTCATTGCTTGTCTAGT+TGG | - | chr3.3:85213392-85213411 | MS.gene012871:intron | 35.0% | |
| AACATCAAAGACAGAGAATC+CGG | - | chr3.3:85208433-85208452 | MS.gene012871:CDS | 35.0% | |
| AAGAATCAACCCCTTAATTC+TGG | - | chr3.3:85209741-85209760 | MS.gene012871:intron | 35.0% | |
| AAGATTGAATAGAACCTGAG+TGG | + | chr3.3:85208830-85208849 | None:intergenic | 35.0% | |
| AATTAATTGCGCCTTTGTGA+GGG | + | chr3.3:85208546-85208565 | None:intergenic | 35.0% | |
| AATTAGTTACTTAGCGGTTG+AGG | + | chr3.3:85212650-85212669 | None:intergenic | 35.0% | |
| ACAATTAGTAGTCACTCAAG+AGG | - | chr3.3:85211979-85211998 | MS.gene012871:CDS | 35.0% | |
| AGTCATAGGCAGACTTTATT+TGG | - | chr3.3:85211236-85211255 | MS.gene012871:intron | 35.0% | |
| AGTGCTAATCATTATGCTGA+AGG | + | chr3.3:85209612-85209631 | None:intergenic | 35.0% | |
| ATCAACTTGAAACCGATCAA+TGG | - | chr3.3:85213282-85213301 | MS.gene012871:intron | 35.0% | |
| ATGAAGCAGAAATTACATCC+AGG | - | chr3.3:85210423-85210442 | MS.gene012871:intron | 35.0% | |
| ATGAATCTATAAACTCCTGC+TGG | - | chr3.3:85212766-85212785 | MS.gene012871:intron | 35.0% | |
| ATGCTGTATCTTCAGCTATT+TGG | - | chr3.3:85208734-85208753 | MS.gene012871:intron | 35.0% | |
| ATGGTGTAATGACTGTTGAA+TGG | - | chr3.3:85210021-85210040 | MS.gene012871:CDS | 35.0% | |
| ATTAGTTACTTAGCGGTTGA+GGG | + | chr3.3:85212649-85212668 | None:intergenic | 35.0% | |
| ATTTGGTATCCCATTGATAC+TGG | - | chr3.3:85208751-85208770 | MS.gene012871:intron | 35.0% | |
| CAACCCTTAATTTACAGTTG+AGG | + | chr3.3:85211747-85211766 | None:intergenic | 35.0% | |
| CAATCACTAGACATAAAGCA+TGG | - | chr3.3:85211145-85211164 | MS.gene012871:intron | 35.0% | |
| CATGCAGATACATTCATCAA+AGG | + | chr3.3:85208993-85209012 | None:intergenic | 35.0% | |
| CATGCTTTATGTCTAGTGAT+TGG | + | chr3.3:85211147-85211166 | None:intergenic | 35.0% | |
| CCTTCTCTAATCAACTCATA+CGG | - | chr3.3:85212954-85212973 | MS.gene012871:intron | 35.0% | |
| CTGATTCAAGATTGAGATTG+TGG | - | chr3.3:85212325-85212344 | MS.gene012871:CDS | 35.0% | |
| CTGGTTTAATCAACAAGATC+AGG | - | chr3.3:85212785-85212804 | MS.gene012871:intron | 35.0% | |
| GAAAAAAGGGAAGGAAAGTA+AGG | + | chr3.3:85212991-85213010 | None:intergenic | 35.0% | |
| GAATTTCAAAATGCCTGGAA+AGG | - | chr3.3:85209178-85209197 | MS.gene012871:intron | 35.0% | |
| GATTTCTCGGTAAAATCAGT+AGG | + | chr3.3:85213347-85213366 | None:intergenic | 35.0% | |
| GGATGTAATTTCTGCTTCAT+TGG | + | chr3.3:85210423-85210442 | None:intergenic | 35.0% | |
| GTAAAATCAGTAGGTTGTTG+TGG | + | chr3.3:85213338-85213357 | None:intergenic | 35.0% | |
| GTCAAATGGTAGAATCTGTT+TGG | - | chr3.3:85212863-85212882 | MS.gene012871:intron | 35.0% | |
| GTGCTAATCATTATGCTGAA+GGG | + | chr3.3:85209611-85209630 | None:intergenic | 35.0% | |
| TATCACAAGGTCAGACATAT+TGG | + | chr3.3:85213951-85213970 | None:intergenic | 35.0% | |
| TCAAATACAAAAATGCGTCC+TGG | - | chr3.3:85210330-85210349 | MS.gene012871:intron | 35.0% | |
| TGTAAACAGGAAAAAAGGGA+AGG | + | chr3.3:85213000-85213019 | None:intergenic | 35.0% | |
| TGTAAATTGATTGTAGGTGG+TGG | - | chr3.3:85209154-85209173 | MS.gene012871:intron | 35.0% | |
| TGTTATGTATTGTCGAAAGG+AGG | - | chr3.3:85209967-85209986 | MS.gene012871:CDS | 35.0% | |
| TTAGACATTACGAGTTCAAG+CGG | - | chr3.3:85210685-85210704 | MS.gene012871:intron | 35.0% | |
| TTATGACATACTGGGAACTT+AGG | - | chr3.3:85209912-85209931 | MS.gene012871:intron | 35.0% | |
| TTCCAACATACTCATTTGTG+TGG | - | chr3.3:85209359-85209378 | MS.gene012871:intron | 35.0% | |
| ! | ATCTCTTCTCTGAAAGTCAT+AGG | - | chr3.3:85211222-85211241 | MS.gene012871:intron | 35.0% |
| ! | ATCTTGTTGATTAAACCAGC+AGG | + | chr3.3:85212784-85212803 | None:intergenic | 35.0% |
| ! | ATTCTAAAAACTTTAGGGGG+TGG | + | chr3.3:85209556-85209575 | None:intergenic | 35.0% |
| ! | GCAAAACTATTTTACACCGT+TGG | - | chr3.3:85213571-85213590 | MS.gene012871:intron | 35.0% |
| ! | GGTCTTTACTAGTCTAAACT+TGG | + | chr3.3:85209428-85209447 | None:intergenic | 35.0% |
| ! | TGATTTTATGCGATTAGCGA+AGG | + | chr3.3:85208476-85208495 | None:intergenic | 35.0% |
| ! | TTTTCCTGCTCTGTTATAAG+TGG | - | chr3.3:85212837-85212856 | MS.gene012871:intron | 35.0% |
| !! | ATCATACATTGATTCCTGAC+GGG | - | chr3.3:85211650-85211669 | MS.gene012871:intron | 35.0% |
| !! | CGTATGAGTTGATTAGAGAA+GGG | + | chr3.3:85212956-85212975 | None:intergenic | 35.0% |
| !! | GATACTGGTTTATTCATCAC+TGG | - | chr3.3:85208766-85208785 | MS.gene012871:intron | 35.0% |
| !! | GGACCCTAAAAATTTTAACC+TGG | - | chr3.3:85211257-85211276 | MS.gene012871:intron | 35.0% |
| !! | TACTGGTTGTTATTTCATCC+TGG | + | chr3.3:85213625-85213644 | None:intergenic | 35.0% |
| !! | TGATGGTGCAATACGTTTTT+GGG | - | chr3.3:85210082-85210101 | MS.gene012871:CDS | 35.0% |
| !! | TGTCTCTAACACTAGTTCTA+CGG | + | chr3.3:85209091-85209110 | None:intergenic | 35.0% |
| !!! | CAATACGTTTTTGGGACATA+AGG | - | chr3.3:85210090-85210109 | MS.gene012871:CDS | 35.0% |
| AAATCAGTAGGTTGTTGTGG+CGG | + | chr3.3:85213335-85213354 | None:intergenic | 40.0% | |
| AAGAAAGTTGCCAATGGAAG+TGG | - | chr3.3:85210357-85210376 | MS.gene012871:intron | 40.0% | |
| AAGGTCAATTGCCGATGAAA+TGG | - | chr3.3:85213867-85213886 | MS.gene012871:CDS | 40.0% | |
| AATGGTCTGCTTCAAGTGAA+TGG | - | chr3.3:85210039-85210058 | MS.gene012871:CDS | 40.0% | |
| ACAAGGTCAGACATATTGGA+AGG | + | chr3.3:85213947-85213966 | None:intergenic | 40.0% | |
| ACAGAGGGCAGATAAGTATT+AGG | - | chr3.3:85211892-85211911 | MS.gene012871:intron | 40.0% | |
| AGAAGAAATACATCAGGGTG+AGG | - | chr3.3:85211396-85211415 | MS.gene012871:intron | 40.0% | |
| AGACTCGCAAATTACGAACA+AGG | + | chr3.3:85210225-85210244 | None:intergenic | 40.0% | |
| AGCTTGACATATTTCACGAG+TGG | + | chr3.3:85209860-85209879 | None:intergenic | 40.0% | |
| AGTGAATGGGTCTTGATTAC+CGG | - | chr3.3:85210053-85210072 | MS.gene012871:CDS | 40.0% | |
| ATGAGACACTGTGCTAACAT+GGG | + | chr3.3:85210577-85210596 | None:intergenic | 40.0% | |
| ATGAGGGTTGTGAAAGTAAG+TGG | - | chr3.3:85212462-85212481 | MS.gene012871:intron | 40.0% | |
| ATGCATTGCAGATTGACAGA+AGG | + | chr3.3:85210873-85210892 | None:intergenic | 40.0% | |
| ATGCGATTAGCGAAGGAATT+TGG | + | chr3.3:85208469-85208488 | None:intergenic | 40.0% | |
| ATGGTCTGCTTCAAGTGAAT+GGG | - | chr3.3:85210040-85210059 | MS.gene012871:CDS | 40.0% | |
| ATTAATTGCGCCTTTGTGAG+GGG | + | chr3.3:85208545-85208564 | None:intergenic | 40.0% | |
| CATGCATGGAACAAAAACGA+CGG | + | chr3.3:85212445-85212464 | None:intergenic | 40.0% | |
| CCTGTGAGTAATAAGGCTTT+AGG | + | chr3.3:85210308-85210327 | None:intergenic | 40.0% | |
| CGTCTTTGTGATATTGCTTC+TGG | - | chr3.3:85209275-85209294 | MS.gene012871:intron | 40.0% | |
| CTAGACATAAAGCATGGTCT+TGG | - | chr3.3:85211151-85211170 | MS.gene012871:intron | 40.0% | |
| GAATTAATTGCGCCTTTGTG+AGG | + | chr3.3:85208547-85208566 | None:intergenic | 40.0% | |
| GACAGGATTGAAAGTAACAG+AGG | - | chr3.3:85210491-85210510 | MS.gene012871:intron | 40.0% | |
| GACCACACAAATGAGTATGT+TGG | + | chr3.3:85209364-85209383 | None:intergenic | 40.0% | |
| GACGATTCACTGTGTCTATA+CGG | + | chr3.3:85211286-85211305 | None:intergenic | 40.0% | |
| GCAGATACATTCATCAAAGG+TGG | + | chr3.3:85208990-85209009 | None:intergenic | 40.0% | |
| GCATTTGCTCATACTTTGTC+TGG | - | chr3.3:85209299-85209318 | MS.gene012871:intron | 40.0% | |
| GCTTGACATATTTCACGAGT+GGG | + | chr3.3:85209859-85209878 | None:intergenic | 40.0% | |
| GGATTGAAAGTAACAGAGGA+TGG | - | chr3.3:85210495-85210514 | MS.gene012871:intron | 40.0% | |
| GTAGAATCTGTTTGGTTGTC+AGG | - | chr3.3:85212871-85212890 | MS.gene012871:intron | 40.0% | |
| GTGAAACTGTGTTTCGTAAG+TGG | - | chr3.3:85209502-85209521 | MS.gene012871:intron | 40.0% | |
| GTGGTGAATTTCAAAATGCC+TGG | - | chr3.3:85209173-85209192 | MS.gene012871:intron | 40.0% | |
| GTTATAAGTGGTCCGTCAAA+TGG | - | chr3.3:85212849-85212868 | MS.gene012871:intron | 40.0% | |
| GTTTAATGGCTATGCACCAA+CGG | + | chr3.3:85213590-85213609 | None:intergenic | 40.0% | |
| TAATCAACTCATACGGCGTA+TGG | - | chr3.3:85212961-85212980 | MS.gene012871:intron | 40.0% | |
| TATACGAACCAGCAACATGT+AGG | - | chr3.3:85209631-85209650 | MS.gene012871:intron | 40.0% | |
| TATGAGACACTGTGCTAACA+TGG | + | chr3.3:85210578-85210597 | None:intergenic | 40.0% | |
| TCCAGGAATGATTTCTACTC+AGG | - | chr3.3:85210440-85210459 | MS.gene012871:intron | 40.0% | |
| TCCTGAGTAGAAATCATTCC+TGG | + | chr3.3:85210444-85210463 | None:intergenic | 40.0% | |
| TCTATCTAGTCACCTATCAG+TGG | + | chr3.3:85209886-85209905 | None:intergenic | 40.0% | |
| TGACCTTGTGATAAACTGCA+GGG | - | chr3.3:85213958-85213977 | MS.gene012871:CDS | 40.0% | |
| TGATGTTCTGTCTGATGACA+GGG | - | chr3.3:85212301-85212320 | MS.gene012871:CDS | 40.0% | |
| TGGAAATCGTCCTTAGAACT+GGG | - | chr3.3:85209522-85209541 | MS.gene012871:intron | 40.0% | |
| TTAGCACAGTGTCTCATACA+AGG | - | chr3.3:85210580-85210599 | MS.gene012871:intron | 40.0% | |
| TTAGTTACTTAGCGGTTGAG+GGG | + | chr3.3:85212648-85212667 | None:intergenic | 40.0% | |
| TTGATGTTCTGTCTGATGAC+AGG | - | chr3.3:85212300-85212319 | MS.gene012871:CDS | 40.0% | |
| ! | CAAAGAGTGCACCATTTCAT+CGG | + | chr3.3:85213881-85213900 | None:intergenic | 40.0% |
| ! | CATGGGTCTATTGACTAGTA+TGG | + | chr3.3:85210560-85210579 | None:intergenic | 40.0% |
| ! | CGTTTTTGTTCCATGCATGA+GGG | - | chr3.3:85212446-85212465 | MS.gene012871:intron | 40.0% |
| ! | GGAATTTGGACGCAATTTTC+CGG | + | chr3.3:85208455-85208474 | None:intergenic | 40.0% |
| ! | TAGGTTTGCTTGTTTGCAAG+CGG | + | chr3.3:85212395-85212414 | None:intergenic | 40.0% |
| !! | ATTATTACCGGTGTCATGTC+CGG | - | chr3.3:85211006-85211025 | MS.gene012871:intron | 40.0% |
| !! | CCGTATGAGTTGATTAGAGA+AGG | + | chr3.3:85212957-85212976 | None:intergenic | 40.0% |
| !! | CCTAAAGCCTTATTACTCAC+AGG | - | chr3.3:85210305-85210324 | MS.gene012871:intron | 40.0% |
| !! | GTGATGGTGCAATACGTTTT+TGG | - | chr3.3:85210081-85210100 | MS.gene012871:CDS | 40.0% |
| !! | TCATACATTGATTCCTGACG+GGG | - | chr3.3:85211651-85211670 | MS.gene012871:intron | 40.0% |
| !! | TCGTTTTTGTTCCATGCATG+AGG | - | chr3.3:85212445-85212464 | MS.gene012871:intron | 40.0% |
| AACTGGCAGGCTATCATCTA+AGG | - | chr3.3:85210395-85210414 | MS.gene012871:intron | 45.0% | |
| AATCAATCTCAGACGCAGCT+TGG | - | chr3.3:85210137-85210156 | MS.gene012871:intron | 45.0% | |
| ACTGGCAGGCTATCATCTAA+GGG | - | chr3.3:85210396-85210415 | MS.gene012871:intron | 45.0% | |
| ACTGTGTCTATACGGTTTCC+AGG | + | chr3.3:85211278-85211297 | None:intergenic | 45.0% | |
| ACTTTCACAACCCTCATGCA+TGG | + | chr3.3:85212459-85212478 | None:intergenic | 45.0% | |
| AGATTGTGGGATGTTGAGTC+AGG | - | chr3.3:85212339-85212358 | MS.gene012871:CDS | 45.0% | |
| AGCGCCGTTATGTTAAGCAT+TGG | + | chr3.3:85209801-85209820 | None:intergenic | 45.0% | |
| AGGAACACTGATCTCACTTC+TGG | - | chr3.3:85212685-85212704 | MS.gene012871:intron | 45.0% | |
| AGTCTTGCACTCAATGGAAC+TGG | - | chr3.3:85211523-85211542 | MS.gene012871:intron | 45.0% | |
| ATCTAGTCACCTATCAGTGG+TGG | + | chr3.3:85209883-85209902 | None:intergenic | 45.0% | |
| ATCTGTTTGGTTGTCAGGTC+TGG | - | chr3.3:85212876-85212895 | MS.gene012871:intron | 45.0% | |
| CAAACGTTCCGTGCTAACTA+AGG | - | chr3.3:85210178-85210197 | MS.gene012871:intron | 45.0% | |
| CAACATGTAGGTTTGAGTGC+CGG | - | chr3.3:85209643-85209662 | MS.gene012871:CDS | 45.0% | |
| CACAACAGTCTTGCACTCAA+TGG | - | chr3.3:85211517-85211536 | MS.gene012871:intron | 45.0% | |
| CACTCAAACCTACATGTTGC+TGG | + | chr3.3:85209642-85209661 | None:intergenic | 45.0% | |
| CATACTTTGTCTGGTCATCG+TGG | - | chr3.3:85209308-85209327 | MS.gene012871:intron | 45.0% | |
| CTGACCTTGTGATAAACTGC+AGG | - | chr3.3:85213957-85213976 | MS.gene012871:CDS | 45.0% | |
| GAAATCGTCCTTAGAACTGG+GGG | - | chr3.3:85209524-85209543 | MS.gene012871:intron | 45.0% | |
| GATCAGGTATGTTCAACAGC+TGG | - | chr3.3:85212801-85212820 | MS.gene012871:intron | 45.0% | |
| GATCGTGCAACTGCTCATTA+TGG | - | chr3.3:85210462-85210481 | MS.gene012871:intron | 45.0% | |
| GCTCATCTCAGACCATTGAT+CGG | + | chr3.3:85213297-85213316 | None:intergenic | 45.0% | |
| GGAAATCGTCCTTAGAACTG+GGG | - | chr3.3:85209523-85209542 | MS.gene012871:intron | 45.0% | |
| GGACAGAAGAAAGTTGCCAA+TGG | - | chr3.3:85210351-85210370 | MS.gene012871:intron | 45.0% | |
| GGCATGTATCTCTTAAGTGC+AGG | - | chr3.3:85210516-85210535 | MS.gene012871:intron | 45.0% | |
| GTGAATGGGTCTTGATTACC+GGG | - | chr3.3:85210054-85210073 | MS.gene012871:CDS | 45.0% | |
| GTGGAAATCGTCCTTAGAAC+TGG | - | chr3.3:85209521-85209540 | MS.gene012871:intron | 45.0% | |
| TCTCATACGCTTATTGCTGC+TGG | - | chr3.3:85209233-85209252 | MS.gene012871:intron | 45.0% | |
| TGAATGGGTCTTGATTACCG+GGG | - | chr3.3:85210055-85210074 | MS.gene012871:CDS | 45.0% | |
| TTAGATGATAGCCTGCCAGT+TGG | + | chr3.3:85210396-85210415 | None:intergenic | 45.0% | |
| TTCTTGTATGGTCACCTGCA+AGG | - | chr3.3:85213848-85213867 | MS.gene012871:CDS | 45.0% | |
| TTGGCAACTTTCTTCTGTCC+AGG | + | chr3.3:85210351-85210370 | None:intergenic | 45.0% | |
| ! | CAGTAAAGCAGCATTAGCCT+TGG | - | chr3.3:85213640-85213659 | MS.gene012871:CDS | 45.0% |
| ! | GCAGTCTTATACACCTTTCC+AGG | + | chr3.3:85209194-85209213 | None:intergenic | 45.0% |
| !! | AACATGTGTCGGTGTTGTGT+CGG | + | chr3.3:85210958-85210977 | None:intergenic | 45.0% |
| !! | AGCAGCATTAGCCTTGGATA+TGG | - | chr3.3:85213646-85213665 | MS.gene012871:CDS | 45.0% |
| !! | ATACATTGATTCCTGACGGG+GGG | - | chr3.3:85211653-85211672 | MS.gene012871:intron | 45.0% |
| !! | CAAGGCTAATGCTGCTTTAC+TGG | + | chr3.3:85213642-85213661 | None:intergenic | 45.0% |
| !! | CATACATTGATTCCTGACGG+GGG | - | chr3.3:85211652-85211671 | MS.gene012871:intron | 45.0% |
| !! | TATTATACAATAATATATTA+TGG | - | chr3.3:85212173-85212192 | MS.gene012871:intron | 5.0% |
| AACGCACGTACGATACTACG+TGG | - | chr3.3:85212738-85212757 | MS.gene012871:intron | 50.0% | |
| AATGGGTCTTGATTACCGGG+GGG | - | chr3.3:85210057-85210076 | MS.gene012871:CDS | 50.0% | |
| ACAAACACCGGACATGACAC+CGG | + | chr3.3:85211016-85211035 | None:intergenic | 50.0% | |
| ACGGAACGTTTGAGTAGAGG+TGG | + | chr3.3:85210170-85210189 | None:intergenic | 50.0% | |
| AGCACGGAACGTTTGAGTAG+AGG | + | chr3.3:85210173-85210192 | None:intergenic | 50.0% | |
| ATCAGGGTGAGGTAGAGAAG+TGG | - | chr3.3:85211407-85211426 | MS.gene012871:intron | 50.0% | |
| CAGTGCTTCATAGTGCCTTC+AGG | - | chr3.3:85211042-85211061 | MS.gene012871:intron | 50.0% | |
| CGGAACGTTTGAGTAGAGGT+GGG | + | chr3.3:85210169-85210188 | None:intergenic | 50.0% | |
| CGGACCACTTATAACAGAGC+AGG | + | chr3.3:85212844-85212863 | None:intergenic | 50.0% | |
| GAACTCGTTTCCCCTCACAA+AGG | - | chr3.3:85208532-85208551 | MS.gene012871:intron | 50.0% | |
| GAATGGGTCTTGATTACCGG+GGG | - | chr3.3:85210056-85210075 | MS.gene012871:CDS | 50.0% | |
| GCACTCAATGGAACTGGCTA+AGG | - | chr3.3:85211529-85211548 | MS.gene012871:intron | 50.0% | |
| GCTTATTGCTGCTGGAACTG+AGG | - | chr3.3:85209241-85209260 | MS.gene012871:intron | 50.0% | |
| GTGAACGTCGTAAACCGCTA+CGG | + | chr3.3:85208626-85208645 | None:intergenic | 50.0% | |
| TAGCGGTTTACGACGTTCAC+CGG | - | chr3.3:85208626-85208645 | MS.gene012871:intron | 50.0% | |
| TCATCGGCAATTGACCTTGC+AGG | + | chr3.3:85213865-85213884 | None:intergenic | 50.0% | |
| TCGCCCTGCAGTTTATCACA+AGG | + | chr3.3:85213964-85213983 | None:intergenic | 50.0% | |
| TGTCAAGCTCCACCACTGAT+AGG | - | chr3.3:85209871-85209890 | MS.gene012871:intron | 50.0% | |
| TGTGATAAACTGCAGGGCGA+AGG | - | chr3.3:85213964-85213983 | MS.gene012871:CDS | 50.0% | |
| TTGCCACAGGAGTTGTACAC+AGG | - | chr3.3:85213808-85213827 | MS.gene012871:CDS | 50.0% | |
| TTGGGACACTAACACCACTC+AGG | - | chr3.3:85208813-85208832 | MS.gene012871:intron | 50.0% | |
| TTTGACGGGACTGCAACAGA+GGG | - | chr3.3:85211877-85211896 | MS.gene012871:intron | 50.0% | |
| ! | AGCATTGGATGTTGGCACAG+TGG | + | chr3.3:85209786-85209805 | None:intergenic | 50.0% |
| ! | ATGTCCACTGCCACTTCCAT+TGG | + | chr3.3:85210370-85210389 | None:intergenic | 50.0% |
| ! | GCACTGGCATACACAAACAC+CGG | + | chr3.3:85211028-85211047 | None:intergenic | 50.0% |
| ! | TTTTGACGGGACTGCAACAG+AGG | - | chr3.3:85211876-85211895 | MS.gene012871:intron | 50.0% |
| !! | CTGAAGGCACTATGAAGCAC+TGG | + | chr3.3:85211044-85211063 | None:intergenic | 50.0% |
| !! | CTGTTTGGTTTGTCAGGTCC+GGG | - | chr3.3:85212899-85212918 | MS.gene012871:intron | 50.0% |
| !! | GCTCATTATGGTGCTGTGAC+AGG | - | chr3.3:85210474-85210493 | MS.gene012871:intron | 50.0% |
| !! | GCTGTTTGGTTTGTCAGGTC+CGG | - | chr3.3:85212898-85212917 | MS.gene012871:intron | 50.0% |
| !! | GTCTGGCTGTTTGGTTTGTC+AGG | - | chr3.3:85212893-85212912 | MS.gene012871:intron | 50.0% |
| !! | TACATTGATTCCTGACGGGG+GGG | - | chr3.3:85211654-85211673 | MS.gene012871:intron | 50.0% |
| !!! | TTTTGGGACATAAGGCGTGC+TGG | - | chr3.3:85210098-85210117 | MS.gene012871:intron | 50.0% |
| ACTCCAGCTATCCTGGTCGT+CGG | + | chr3.3:85213995-85214014 | None:intergenic | 55.0% | |
| AGCGGTTGAGGGGTGGAATT+GGG | + | chr3.3:85212638-85212657 | None:intergenic | 55.0% | |
| CCACAGGAGTTGTACACAGG+TGG | - | chr3.3:85213811-85213830 | MS.gene012871:CDS | 55.0% | |
| CCACCTGTGTACAACTCCTG+TGG | + | chr3.3:85213814-85213833 | None:intergenic | 55.0% | |
| CCATCTCCGTCGAAATCGCT+CGG | + | chr3.3:85208652-85208671 | None:intergenic | 55.0% | |
| GGTTGTCAGGTCTGGCTGTT+TGG | - | chr3.3:85212884-85212903 | MS.gene012871:intron | 55.0% | |
| GTTACTTAGCGGTTGAGGGG+TGG | + | chr3.3:85212645-85212664 | None:intergenic | 55.0% | |
| GTTGCCAATGGAAGTGGCAG+TGG | - | chr3.3:85210363-85210382 | MS.gene012871:intron | 55.0% | |
| TAGCGGTTGAGGGGTGGAAT+TGG | + | chr3.3:85212639-85212658 | None:intergenic | 55.0% | |
| TAGGTTGTTGTGGCGGTGGT+GGG | + | chr3.3:85213328-85213347 | None:intergenic | 55.0% | |
| TATTGCACCATCACACCCCC+CGG | + | chr3.3:85210075-85210094 | None:intergenic | 55.0% | |
| TCAGTAGGTTGTTGTGGCGG+TGG | + | chr3.3:85213332-85213351 | None:intergenic | 55.0% | |
| TGCGTCAGATGCATCCGTAG+CGG | - | chr3.3:85208609-85208628 | MS.gene012871:intron | 55.0% | |
| ! | AAGAGGCAGCGAGCTTTGAC+TGG | - | chr3.3:85211996-85212015 | MS.gene012871:CDS | 55.0% |
| ! | TTGATTACCGGGGGGTGTGA+TGG | - | chr3.3:85210065-85210084 | MS.gene012871:CDS | 55.0% |
| AGGTTGTTGTGGCGGTGGTG+GGG | + | chr3.3:85213327-85213346 | None:intergenic | 60.0% | |
| ATCCCGACGACCAGGATAGC+TGG | - | chr3.3:85213989-85214008 | MS.gene012871:CDS | 60.0% | |
| CCGAGCGATTTCGACGGAGA+TGG | - | chr3.3:85208649-85208668 | MS.gene012871:intron | 60.0% | |
| CTCCAGCTATCCTGGTCGTC+GGG | + | chr3.3:85213994-85214013 | None:intergenic | 60.0% | |
| GGCAGTGGACATCTGCCAAC+TGG | - | chr3.3:85210378-85210397 | MS.gene012871:intron | 60.0% | |
| GGCATGCACCCCCAGTTCTA+AGG | + | chr3.3:85209535-85209554 | None:intergenic | 60.0% | |
| GTAGGTTGTTGTGGCGGTGG+TGG | + | chr3.3:85213329-85213348 | None:intergenic | 60.0% | |
| GTGGACATCTGCCAACTGGC+AGG | - | chr3.3:85210382-85210401 | MS.gene012871:intron | 60.0% | |
| TGATTCCTGACGGGGGGGAA+GGG | - | chr3.3:85211659-85211678 | MS.gene012871:intron | 60.0% | |
| TTGATTCCTGACGGGGGGGA+AGG | - | chr3.3:85211658-85211677 | MS.gene012871:intron | 60.0% | |
| CACCGGCCGAGCGATTTCGA+CGG | - | chr3.3:85208643-85208662 | MS.gene012871:intron | 65.0% | |
| CGAAGGAGATCCCGACGACC+AGG | - | chr3.3:85213981-85214000 | MS.gene012871:CDS | 65.0% | |
| CTCCGTCGAAATCGCTCGGC+CGG | + | chr3.3:85208648-85208667 | None:intergenic | 65.0% | |
| TTCAACCCTTCCCCCCCGTC+AGG | + | chr3.3:85211667-85211686 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 85208418 | 85214020 | 85208418 | ID=MS.gene012871 |
| chr3.3 | mRNA | 85208418 | 85214020 | 85208418 | ID=MS.gene012871.t1;Parent=MS.gene012871 |
| chr3.3 | exon | 85213604 | 85214020 | 85213604 | ID=MS.gene012871.t1.exon1;Parent=MS.gene012871.t1 |
| chr3.3 | CDS | 85213604 | 85214020 | 85213604 | ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1 |
| chr3.3 | exon | 85213109 | 85213268 | 85213109 | ID=MS.gene012871.t1.exon2;Parent=MS.gene012871.t1 |
| chr3.3 | CDS | 85213109 | 85213268 | 85213109 | ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1 |
| chr3.3 | exon | 85212239 | 85212417 | 85212239 | ID=MS.gene012871.t1.exon3;Parent=MS.gene012871.t1 |
| chr3.3 | CDS | 85212239 | 85212417 | 85212239 | ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1 |
| chr3.3 | exon | 85211901 | 85212111 | 85211901 | ID=MS.gene012871.t1.exon4;Parent=MS.gene012871.t1 |
| chr3.3 | CDS | 85211901 | 85212111 | 85211901 | ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1 |
| chr3.3 | exon | 85209962 | 85210116 | 85209962 | ID=MS.gene012871.t1.exon5;Parent=MS.gene012871.t1 |
| chr3.3 | CDS | 85209962 | 85210116 | 85209962 | ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1 |
| chr3.3 | exon | 85209632 | 85209721 | 85209632 | ID=MS.gene012871.t1.exon6;Parent=MS.gene012871.t1 |
| chr3.3 | CDS | 85209632 | 85209721 | 85209632 | ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1 |
| chr3.3 | exon | 85208550 | 85208621 | 85208550 | ID=MS.gene012871.t1.exon7;Parent=MS.gene012871.t1 |
| chr3.3 | CDS | 85208550 | 85208621 | 85208550 | ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1 |
| chr3.3 | exon | 85208418 | 85208459 | 85208418 | ID=MS.gene012871.t1.exon8;Parent=MS.gene012871.t1 |
| chr3.3 | CDS | 85208418 | 85208459 | 85208418 | ID=cds.MS.gene012871.t1;Parent=MS.gene012871.t1 |
| Gene Sequence |
| Protein sequence |
