Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012899.t1 | XP_013461757.1 | 98.5 | 326 | 5 | 0 | 1 | 326 | 1 | 326 | 5.20E-188 | 666.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012899.t1 | Q10170 | 32.9 | 334 | 201 | 8 | 6 | 318 | 21 | 352 | 6.7e-51 | 202.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012899.t1 | G8A2A3 | 98.5 | 326 | 5 | 0 | 1 | 326 | 1 | 326 | 3.8e-188 | 666.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88624 | MS.gene012899 | PPI |
| MS.gene012899 | MS.gene33297 | PPI |
| MS.gene012899 | MS.gene91142 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012899.t1 | MTR_3g102800 | 98.466 | 326 | 5 | 0 | 1 | 326 | 1 | 326 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012899.t1 | AT5G65860 | 75.466 | 322 | 77 | 1 | 4 | 323 | 25 | 346 | 0.0 | 528 |
| MS.gene012899.t1 | AT5G65860 | 75.466 | 322 | 77 | 1 | 4 | 323 | 5 | 326 | 0.0 | 528 |
| MS.gene012899.t1 | AT5G65860 | 75.466 | 322 | 77 | 1 | 4 | 323 | 5 | 326 | 0.0 | 528 |
Find 100 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCTTGAGCTTGAGAATT+TGG | 0.148087 | 3.4:+90475379 | MS.gene012899:CDS |
| TGATTCCGGTTATGATTATT+TGG | 0.213704 | 3.4:+90474031 | MS.gene012899:CDS |
| CATGTACTCAATATTGGATT+TGG | 0.261666 | 3.4:+90474173 | MS.gene012899:CDS |
| TCTCTTGAGCTTGAGAATTT+GGG | 0.285212 | 3.4:+90475380 | MS.gene012899:CDS |
| ATTGCCTGTTAAGGATTGTT+TGG | 0.285893 | 3.4:+90475424 | MS.gene012899:CDS |
| TTGCCTGTTAAGGATTGTTT+GGG | 0.287460 | 3.4:+90475425 | MS.gene012899:CDS |
| CTATGCGAGGCGGCGATTAA+AGG | 0.287831 | 3.4:+90473471 | MS.gene012899:CDS |
| GAAGAAGCTCATAAGCTTCT+TGG | 0.296988 | 3.4:-90473695 | None:intergenic |
| GTTATGATTATTTGGAAGAT+AGG | 0.317017 | 3.4:+90474039 | MS.gene012899:CDS |
| TTCTCTCCGCCGGTGCTCCT+TGG | 0.327627 | 3.4:+90473616 | MS.gene012899:CDS |
| ACGTATGCTTCGCACGGGTT+GGG | 0.340731 | 3.4:+90474277 | MS.gene012899:CDS |
| TCTTTCTTCAATGGCCTTTG+TGG | 0.351869 | 3.4:+90475317 | MS.gene012899:CDS |
| ATTAATTCCATTGCCTGTTA+AGG | 0.360892 | 3.4:+90475415 | MS.gene012899:CDS |
| CATGCTAAAGCTGTTTGTTC+AGG | 0.364371 | 3.4:+90474143 | MS.gene012899:CDS |
| GGTGGTCATGTACTCAATAT+TGG | 0.375114 | 3.4:+90474167 | MS.gene012899:CDS |
| CTCAATATTGGATTTGGAAT+GGG | 0.395612 | 3.4:+90474179 | MS.gene012899:CDS |
| GGAATATACTCTTTCTTCAA+TGG | 0.395895 | 3.4:+90475308 | MS.gene012899:CDS |
| TCATCTGCAGACTGACAAAC+AGG | 0.396199 | 3.4:-90475506 | None:intergenic |
| AACGTATGCTTCGCACGGGT+TGG | 0.424986 | 3.4:+90474276 | MS.gene012899:CDS |
| TGCTTTGCGGCGAGCATAAG+AGG | 0.429396 | 3.4:-90473567 | None:intergenic |
| ATCTTCCAAATAATCATAAC+CGG | 0.430063 | 3.4:-90474036 | None:intergenic |
| GAAAAGAAAAGCACTGATTC+CGG | 0.430789 | 3.4:+90474017 | MS.gene012899:CDS |
| CCATGTTGTTTACTGCCACT+TGG | 0.440964 | 3.4:+90475355 | MS.gene012899:CDS |
| CGTATGCTTCGCACGGGTTG+GGG | 0.445579 | 3.4:+90474278 | MS.gene012899:CDS |
| GGGATATTCTTTGACACCTA+CGG | 0.456919 | 3.4:+90475224 | MS.gene012899:intron |
| TTAGCATGAGCCTCCATCAA+TGG | 0.470308 | 3.4:-90474128 | None:intergenic |
| GGGTGCATGGCCGTGCTTTG+CGG | 0.480399 | 3.4:-90473580 | None:intergenic |
| ATTCGATCTGAATTAGTGTT+GGG | 0.480443 | 3.4:+90473978 | MS.gene012899:CDS |
| CCACCCGGCTTCAACAATAC+AGG | 0.482020 | 3.4:-90475287 | None:intergenic |
| GGATATTCTTTGACACCTAC+GGG | 0.485801 | 3.4:+90475225 | MS.gene012899:CDS |
| ACTCAATATTGGATTTGGAA+TGG | 0.488555 | 3.4:+90474178 | MS.gene012899:CDS |
| TATGAGCTTCTTCTCAATGC+TGG | 0.492065 | 3.4:+90473705 | MS.gene012899:CDS |
| TTCTTCAATGGCCTTTGTGG+TGG | 0.493941 | 3.4:+90475320 | MS.gene012899:CDS |
| GTTGGGAACAATTGCTAGGA+AGG | 0.504005 | 3.4:+90473995 | MS.gene012899:CDS |
| TTATGATTATTTGGAAGATA+GGG | 0.505378 | 3.4:+90474040 | MS.gene012899:CDS |
| GGAGAGAAGGATGTCGAGGA+TGG | 0.507596 | 3.4:-90473601 | None:intergenic |
| CTCGACATCCTTCTCTCCGC+CGG | 0.511422 | 3.4:+90473606 | MS.gene012899:CDS |
| TCAACAATGGTATGTTTCAC+AGG | 0.511587 | 3.4:-90474233 | None:intergenic |
| AAGGTGTCAAACACAGATAC+TGG | 0.517912 | 3.4:+90475462 | MS.gene012899:CDS |
| TCTCCCTGTATTGTTGAAGC+CGG | 0.518751 | 3.4:+90475283 | MS.gene012899:CDS |
| GGCATGGGAGAAGCCATTGA+TGG | 0.521455 | 3.4:+90474115 | MS.gene012899:CDS |
| TATTCGATCTGAATTAGTGT+TGG | 0.521798 | 3.4:+90473977 | MS.gene012899:CDS |
| CATATGTTTCAAGCTGAGAC+AGG | 0.523440 | 3.4:-90474346 | None:intergenic |
| TCTCCTTCCAACCTTTCCGC+CGG | 0.523539 | 3.4:+90473648 | MS.gene012899:CDS |
| CTCTTGAGCTTGAGAATTTG+GGG | 0.525010 | 3.4:+90475381 | MS.gene012899:CDS |
| AAACAATCCTTAACAGGCAA+TGG | 0.525589 | 3.4:-90475422 | None:intergenic |
| CTCCCTGTATTGTTGAAGCC+GGG | 0.525798 | 3.4:+90475284 | MS.gene012899:CDS |
| GTTACTCATTTCGACGGCGA+TGG | 0.526133 | 3.4:+90473537 | MS.gene012899:CDS |
| AAAGCTGTTTGTTCAGGAGG+TGG | 0.540005 | 3.4:+90474149 | MS.gene012899:CDS |
| AAGGAGCACCGGCGGAGAGA+AGG | 0.543782 | 3.4:-90473614 | None:intergenic |
| TAGTGTTGGGAACAATTGCT+AGG | 0.547152 | 3.4:+90473991 | MS.gene012899:CDS |
| AGCATACGTTCATAAACCTC+AGG | 0.548913 | 3.4:-90474263 | None:intergenic |
| GCTAAAGCTGTTTGTTCAGG+AGG | 0.553788 | 3.4:+90474146 | MS.gene012899:CDS |
| TCTCAGCTTGAAACATATGA+TGG | 0.557266 | 3.4:+90474350 | MS.gene012899:CDS |
| TCAACAATACAGGGAGATGT+TGG | 0.557688 | 3.4:-90475277 | None:intergenic |
| TTGCGAAATCACCGGCGGAA+AGG | 0.562943 | 3.4:-90473659 | None:intergenic |
| GGATGTCGAGGATGGGTGCA+TGG | 0.563108 | 3.4:-90473593 | None:intergenic |
| GATTAAAGGTGAGACGGAGA+AGG | 0.572642 | 3.4:+90473485 | MS.gene012899:CDS |
| CTTATGCTCGCCGCAAAGCA+CGG | 0.574060 | 3.4:+90473570 | MS.gene012899:CDS |
| GAGAGAAGGATGTCGAGGAT+GGG | 0.580848 | 3.4:-90473600 | None:intergenic |
| GAAATGAGTAACGTCGGCGC+CGG | 0.581725 | 3.4:-90473526 | None:intergenic |
| GAAATCACCGGCGGAAAGGT+TGG | 0.582456 | 3.4:-90473655 | None:intergenic |
| TTCTTGCATTGCGAAATCAC+CGG | 0.583608 | 3.4:-90473667 | None:intergenic |
| GCCGACGTTACTCATTTCGA+CGG | 0.583836 | 3.4:+90473531 | MS.gene012899:CDS |
| AAGAGCGTTCCAAGGAGCAC+CGG | 0.584379 | 3.4:-90473625 | None:intergenic |
| CACCCGGCTTCAACAATACA+GGG | 0.584983 | 3.4:-90475286 | None:intergenic |
| ACAATACAGGGAGATGTTGG+TGG | 0.586371 | 3.4:-90475274 | None:intergenic |
| GAAGGAGAAAGAGCGTTCCA+AGG | 0.591032 | 3.4:-90473633 | None:intergenic |
| TCGCACGGGTTGGGGTGAGA+AGG | 0.593861 | 3.4:+90474286 | MS.gene012899:CDS |
| CATTGTTGAGGCTCATCCTG+AGG | 0.595016 | 3.4:+90474247 | MS.gene012899:CDS |
| GTAAAGTCTCTTATTGACTC+CGG | 0.598492 | 3.4:+90473507 | MS.gene012899:CDS |
| AGCGTTCCAAGGAGCACCGG+CGG | 0.601767 | 3.4:-90473622 | None:intergenic |
| TGAGAGTAAAGCTGTGATGA+TGG | 0.605332 | 3.4:+90474094 | MS.gene012899:CDS |
| TATGAACGTATGCTTCGCAC+GGG | 0.607053 | 3.4:+90474272 | MS.gene012899:CDS |
| TCACCGGCGGAAAGGTTGGA+AGG | 0.609268 | 3.4:-90473651 | None:intergenic |
| CCAAGTGGCAGTAAACAACA+TGG | 0.611294 | 3.4:-90475355 | None:intergenic |
| GGTGATTTCGCAATGCAAGA+AGG | 0.613606 | 3.4:+90473669 | MS.gene012899:CDS |
| TTATGAACGTATGCTTCGCA+CGG | 0.616186 | 3.4:+90474271 | MS.gene012899:CDS |
| CCTGTATTGTTGAAGCCGGG+TGG | 0.618155 | 3.4:+90475287 | MS.gene012899:CDS |
| GTAAAGCTGTGATGATGGCA+TGG | 0.618846 | 3.4:+90474099 | MS.gene012899:CDS |
| CGGCGGAGAGAAGGATGTCG+AGG | 0.626647 | 3.4:-90473605 | None:intergenic |
| AAGAAAGAGTATATTCCACC+CGG | 0.629337 | 3.4:-90475302 | None:intergenic |
| TGCCTGTTAAGGATTGTTTG+GGG | 0.632646 | 3.4:+90475426 | MS.gene012899:CDS |
| GGCGGCGATTAAAGGTGAGA+CGG | 0.637047 | 3.4:+90473479 | MS.gene012899:CDS |
| ATGGGAGAAGCCATTGATGG+AGG | 0.639979 | 3.4:+90474118 | MS.gene012899:CDS |
| GCCTGTTAAGGATTGTTTGG+GGG | 0.641124 | 3.4:+90475427 | MS.gene012899:CDS |
| AGGCAATGGAATTAATTGTG+TGG | 0.643792 | 3.4:-90475408 | None:intergenic |
| GAAGGAAGAAGAACTATGCG+AGG | 0.647053 | 3.4:+90473458 | MS.gene012899:CDS |
| CTCAGGATGAGCCTCAACAA+TGG | 0.655173 | 3.4:-90474246 | None:intergenic |
| TGTGAAACATACCATTGTTG+AGG | 0.661097 | 3.4:+90474235 | MS.gene012899:CDS |
| TAAAGCTGTGATGATGGCAT+GGG | 0.687762 | 3.4:+90474100 | MS.gene012899:CDS |
| TTGCATTGCGAAATCACCGG+CGG | 0.690041 | 3.4:-90473664 | None:intergenic |
| GCCGTCGAAATGAGTAACGT+CGG | 0.693746 | 3.4:-90473532 | None:intergenic |
| AAAATGCATTACCACCACAA+AGG | 0.694739 | 3.4:-90475331 | None:intergenic |
| CAAGCTCAAGAGATACCAAG+TGG | 0.699247 | 3.4:-90475370 | None:intergenic |
| GGAAGAAGAACTATGCGAGG+CGG | 0.711413 | 3.4:+90473461 | MS.gene012899:CDS |
| CATCTGCAGACTGACAAACA+GGG | 0.712802 | 3.4:-90475505 | None:intergenic |
| GTCGTCATAGTACTCCCCGT+AGG | 0.723736 | 3.4:-90475240 | None:intergenic |
| GATATTCTTTGACACCTACG+GGG | 0.737280 | 3.4:+90475226 | MS.gene012899:CDS |
| CTGCAGACTGACAAACAGGG+AGG | 0.782216 | 3.4:-90475502 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAAAATCAAAACAAA+TGG | - | chr3.4:90475202-90475221 | None:intergenic | 15.0% |
| !!! | TTTTTGTATTTTACTTTGTT+AGG | + | chr3.4:90473954-90473973 | MS.gene012899:intron | 15.0% |
| !! | AAAAAAAAAACAGCAGTAAT+AGG | + | chr3.4:90474659-90474678 | MS.gene012899:intron | 20.0% |
| !! | AAAAAAAAACAGCAGTAATA+GGG | + | chr3.4:90474660-90474679 | MS.gene012899:intron | 20.0% |
| !! | TTATGATTATTTGGAAGATA+GGG | + | chr3.4:90474040-90474059 | MS.gene012899:CDS | 20.0% |
| !!! | AATAGAATTGATTTCGTAAA+AGG | + | chr3.4:90474502-90474521 | MS.gene012899:intron | 20.0% |
| !!! | TCATTTTCACAAATTATTAC+CGG | - | chr3.4:90473803-90473822 | None:intergenic | 20.0% |
| !!! | TGTTTTGATTTTCTTTTTCA+GGG | + | chr3.4:90475204-90475223 | MS.gene012899:intron | 20.0% |
| !!! | TTGTTTTGATTTTCTTTTTC+AGG | + | chr3.4:90475203-90475222 | MS.gene012899:intron | 20.0% |
| !!! | TTTTAGTGAAGATAAAGTAA+TGG | + | chr3.4:90474067-90474086 | MS.gene012899:CDS | 20.0% |
| ! | AACACTTAATGTTAAAAAGC+CGG | + | chr3.4:90474974-90474993 | MS.gene012899:intron | 25.0% |
| ! | AACTTAAATACAACTGCTTA+TGG | + | chr3.4:90474529-90474548 | MS.gene012899:intron | 25.0% |
| ! | ATCTTCCAAATAATCATAAC+CGG | - | chr3.4:90474039-90474058 | None:intergenic | 25.0% |
| ! | ATTAAAAGTAGCATCTATGT+TGG | - | chr3.4:90474823-90474842 | None:intergenic | 25.0% |
| ! | GTTATGATTATTTGGAAGAT+AGG | + | chr3.4:90474039-90474058 | MS.gene012899:CDS | 25.0% |
| ! | TAACCACATAAATTTCACAA+AGG | - | chr3.4:90474712-90474731 | None:intergenic | 25.0% |
| ! | TGTTTAACACTAACATGTAT+TGG | + | chr3.4:90473864-90473883 | MS.gene012899:intron | 25.0% |
| ! | TTAGTGAAAATACATGTCTT+TGG | - | chr3.4:90474898-90474917 | None:intergenic | 25.0% |
| ! | TTGCTTATGTGAAAAACATA+GGG | + | chr3.4:90475102-90475121 | MS.gene012899:intron | 25.0% |
| ! | TTTCACAAAGGAAAAAACTT+AGG | - | chr3.4:90474700-90474719 | None:intergenic | 25.0% |
| ! | TTTCCTTTGTGAAATTTATG+TGG | + | chr3.4:90474706-90474725 | MS.gene012899:intron | 25.0% |
| ! | TTTGCTTATGTGAAAAACAT+AGG | + | chr3.4:90475101-90475120 | MS.gene012899:intron | 25.0% |
| !! | GAAAATGTTCAGATCATTTT+TGG | + | chr3.4:90474308-90474327 | MS.gene012899:CDS | 25.0% |
| !! | GGTTACAATTTAGTTTCTAA+GGG | + | chr3.4:90474727-90474746 | MS.gene012899:intron | 25.0% |
| !! | TCTAATCAAACTAAGTATTG+AGG | + | chr3.4:90474847-90474866 | MS.gene012899:intron | 25.0% |
| !! | TGGTTACAATTTAGTTTCTA+AGG | + | chr3.4:90474726-90474745 | MS.gene012899:intron | 25.0% |
| !!! | AAGTGTTTTTGTTTTATCAG+TGG | - | chr3.4:90474961-90474980 | None:intergenic | 25.0% |
| ACACTTAATGTTAAAAAGCC+GGG | + | chr3.4:90474975-90474994 | MS.gene012899:intron | 30.0% | |
| ACTCAATATTGGATTTGGAA+TGG | + | chr3.4:90474178-90474197 | MS.gene012899:CDS | 30.0% | |
| ATAGTTAATTAGACACAGAG+TGG | - | chr3.4:90473744-90473763 | None:intergenic | 30.0% | |
| ATTAATTCCATTGCCTGTTA+AGG | + | chr3.4:90475415-90475434 | MS.gene012899:CDS | 30.0% | |
| ATTCGATCTGAATTAGTGTT+GGG | + | chr3.4:90473978-90473997 | MS.gene012899:CDS | 30.0% | |
| ATTTCAGCACTAGAATTGAT+TGG | + | chr3.4:90474428-90474447 | MS.gene012899:intron | 30.0% | |
| CATGTACTCAATATTGGATT+TGG | + | chr3.4:90474173-90474192 | MS.gene012899:CDS | 30.0% | |
| GGAATATACTCTTTCTTCAA+TGG | + | chr3.4:90475308-90475327 | MS.gene012899:CDS | 30.0% | |
| TAAGGGAAGTTGTTTATGAT+TGG | + | chr3.4:90474744-90474763 | MS.gene012899:intron | 30.0% | |
| TATTCGATCTGAATTAGTGT+TGG | + | chr3.4:90473977-90473996 | MS.gene012899:CDS | 30.0% | |
| TGATTCCGGTTATGATTATT+TGG | + | chr3.4:90474031-90474050 | MS.gene012899:CDS | 30.0% | |
| TGCTGAAATTAAACATGTAC+TGG | - | chr3.4:90474417-90474436 | None:intergenic | 30.0% | |
| TTATGTGAAAAACATAGGGA+AGG | + | chr3.4:90475106-90475125 | MS.gene012899:intron | 30.0% | |
| TTTCAGCACTAGAATTGATT+GGG | + | chr3.4:90474429-90474448 | MS.gene012899:intron | 30.0% | |
| ! | CTCAATATTGGATTTGGAAT+GGG | + | chr3.4:90474179-90474198 | MS.gene012899:CDS | 30.0% |
| ! | TACTATTTTGCAACGGTATT+TGG | + | chr3.4:90475027-90475046 | MS.gene012899:intron | 30.0% |
| AAAATGCATTACCACCACAA+AGG | - | chr3.4:90475334-90475353 | None:intergenic | 35.0% | |
| AAACAATCCTTAACAGGCAA+TGG | - | chr3.4:90475425-90475444 | None:intergenic | 35.0% | |
| ACAATCCAGTTACAATTACC+AGG | - | chr3.4:90475156-90475175 | None:intergenic | 35.0% | |
| AGGCAATGGAATTAATTGTG+TGG | - | chr3.4:90475411-90475430 | None:intergenic | 35.0% | |
| ATAAGCAAAACTTGCATTCC+TGG | - | chr3.4:90475090-90475109 | None:intergenic | 35.0% | |
| ATCTCTTGAGCTTGAGAATT+TGG | + | chr3.4:90475379-90475398 | MS.gene012899:CDS | 35.0% | |
| ATTGCCTGTTAAGGATTGTT+TGG | + | chr3.4:90475424-90475443 | MS.gene012899:CDS | 35.0% | |
| TAATGCCTGGTAATTGTAAC+TGG | + | chr3.4:90475148-90475167 | MS.gene012899:intron | 35.0% | |
| TCAACAATGGTATGTTTCAC+AGG | - | chr3.4:90474236-90474255 | None:intergenic | 35.0% | |
| TCACTAACATCACAGTTGAT+AGG | + | chr3.4:90474911-90474930 | MS.gene012899:intron | 35.0% | |
| TCAGTGGATAGTATCAGAAT+TGG | - | chr3.4:90474945-90474964 | None:intergenic | 35.0% | |
| TCTCAGCTTGAAACATATGA+TGG | + | chr3.4:90474350-90474369 | MS.gene012899:CDS | 35.0% | |
| TCTCTTGAGCTTGAGAATTT+GGG | + | chr3.4:90475380-90475399 | MS.gene012899:CDS | 35.0% | |
| TGTGAAACATACCATTGTTG+AGG | + | chr3.4:90474235-90474254 | MS.gene012899:CDS | 35.0% | |
| TGTGTGACTTAAGAATTACC+CGG | - | chr3.4:90474996-90475015 | None:intergenic | 35.0% | |
| TTGCCTGTTAAGGATTGTTT+GGG | + | chr3.4:90475425-90475444 | MS.gene012899:CDS | 35.0% | |
| ! | AAGAAAGAGTATATTCCACC+CGG | - | chr3.4:90475305-90475324 | None:intergenic | 35.0% |
| ! | TGTGAGCTACTATTTTGCAA+CGG | + | chr3.4:90475020-90475039 | MS.gene012899:intron | 35.0% |
| !! | GAAAAGAAAAGCACTGATTC+CGG | + | chr3.4:90474017-90474036 | MS.gene012899:CDS | 35.0% |
| !! | GTAAAGTCTCTTATTGACTC+CGG | + | chr3.4:90473507-90473526 | MS.gene012899:CDS | 35.0% |
| !!! | TTCAGATCATTTTTGGTCGT+TGG | + | chr3.4:90474315-90474334 | MS.gene012899:CDS | 35.0% |
| AGCATACGTTCATAAACCTC+AGG | - | chr3.4:90474266-90474285 | None:intergenic | 40.0% | |
| ATTGTTTGGGGGAAGAAGTT+TGG | + | chr3.4:90475438-90475457 | MS.gene012899:CDS | 40.0% | |
| CATATGTTTCAAGCTGAGAC+AGG | - | chr3.4:90474349-90474368 | None:intergenic | 40.0% | |
| CATGCTAAAGCTGTTTGTTC+AGG | + | chr3.4:90474143-90474162 | MS.gene012899:CDS | 40.0% | |
| CTCTTGAGCTTGAGAATTTG+GGG | + | chr3.4:90475381-90475400 | MS.gene012899:CDS | 40.0% | |
| GAAGAAGCTCATAAGCTTCT+TGG | - | chr3.4:90473698-90473717 | None:intergenic | 40.0% | |
| GACACAGAGTGGTTTGAATT+TGG | - | chr3.4:90473733-90473752 | None:intergenic | 40.0% | |
| GATATTCTTTGACACCTACG+GGG | + | chr3.4:90475226-90475245 | MS.gene012899:CDS | 40.0% | |
| GGATATTCTTTGACACCTAC+GGG | + | chr3.4:90475225-90475244 | MS.gene012899:CDS | 40.0% | |
| GGGATATTCTTTGACACCTA+CGG | + | chr3.4:90475224-90475243 | MS.gene012899:intron | 40.0% | |
| GGTGGTCATGTACTCAATAT+TGG | + | chr3.4:90474167-90474186 | MS.gene012899:CDS | 40.0% | |
| GTTTGTTTGGTTGTAATGCC+TGG | + | chr3.4:90475135-90475154 | MS.gene012899:intron | 40.0% | |
| TATGAGCTTCTTCTCAATGC+TGG | + | chr3.4:90473705-90473724 | MS.gene012899:CDS | 40.0% | |
| TCAACAATACAGGGAGATGT+TGG | - | chr3.4:90475280-90475299 | None:intergenic | 40.0% | |
| TCTTTCTTCAATGGCCTTTG+TGG | + | chr3.4:90475317-90475336 | MS.gene012899:CDS | 40.0% | |
| TGAGAGTAAAGCTGTGATGA+TGG | + | chr3.4:90474094-90474113 | MS.gene012899:CDS | 40.0% | |
| TGCCTGTTAAGGATTGTTTG+GGG | + | chr3.4:90475426-90475445 | MS.gene012899:CDS | 40.0% | |
| TTATGAACGTATGCTTCGCA+CGG | + | chr3.4:90474271-90474290 | MS.gene012899:CDS | 40.0% | |
| TTCTTGCATTGCGAAATCAC+CGG | - | chr3.4:90473670-90473689 | None:intergenic | 40.0% | |
| TTGTTTGGGGGAAGAAGTTT+GGG | + | chr3.4:90475439-90475458 | MS.gene012899:CDS | 40.0% | |
| ! | AAGGTGTCAAACACAGATAC+TGG | + | chr3.4:90475462-90475481 | MS.gene012899:CDS | 40.0% |
| ! | ATGCCTTCCATTAGAAGTGT+CGG | + | chr3.4:90473890-90473909 | MS.gene012899:intron | 40.0% |
| ! | GGGAAGGTTTTCTGTTTGTT+TGG | + | chr3.4:90475122-90475141 | MS.gene012899:intron | 40.0% |
| ! | TAGTGTTGGGAACAATTGCT+AGG | + | chr3.4:90473991-90474010 | MS.gene012899:CDS | 40.0% |
| !! | AATAGCACCGACACTTCTAA+TGG | - | chr3.4:90473900-90473919 | None:intergenic | 40.0% |
| !! | TAAAGCTGTGATGATGGCAT+GGG | + | chr3.4:90474100-90474119 | MS.gene012899:CDS | 40.0% |
| AAAGCTGTTTGTTCAGGAGG+TGG | + | chr3.4:90474149-90474168 | MS.gene012899:CDS | 45.0% | |
| ACAATACAGGGAGATGTTGG+TGG | - | chr3.4:90475277-90475296 | None:intergenic | 45.0% | |
| CAAGCTCAAGAGATACCAAG+TGG | - | chr3.4:90475373-90475392 | None:intergenic | 45.0% | |
| CATCTGCAGACTGACAAACA+GGG | - | chr3.4:90475508-90475527 | None:intergenic | 45.0% | |
| CCAAGTGGCAGTAAACAACA+TGG | - | chr3.4:90475358-90475377 | None:intergenic | 45.0% | |
| GAAGGAAGAAGAACTATGCG+AGG | + | chr3.4:90473458-90473477 | MS.gene012899:CDS | 45.0% | |
| GATTAAAGGTGAGACGGAGA+AGG | + | chr3.4:90473485-90473504 | MS.gene012899:CDS | 45.0% | |
| GCCTCTAAACTCTTTGACGT+GGG | + | chr3.4:90475176-90475195 | MS.gene012899:intron | 45.0% | |
| GCCTGTTAAGGATTGTTTGG+GGG | + | chr3.4:90475427-90475446 | MS.gene012899:CDS | 45.0% | |
| GCTAAAGCTGTTTGTTCAGG+AGG | + | chr3.4:90474146-90474165 | MS.gene012899:CDS | 45.0% | |
| GGTGATTTCGCAATGCAAGA+AGG | + | chr3.4:90473669-90473688 | MS.gene012899:CDS | 45.0% | |
| GTTAGTGTCAGTTTCGTGTC+AGG | - | chr3.4:90473771-90473790 | None:intergenic | 45.0% | |
| GTTGGGAACAATTGCTAGGA+AGG | + | chr3.4:90473995-90474014 | MS.gene012899:CDS | 45.0% | |
| TATGAACGTATGCTTCGCAC+GGG | + | chr3.4:90474272-90474291 | MS.gene012899:CDS | 45.0% | |
| TCATCTGCAGACTGACAAAC+AGG | - | chr3.4:90475509-90475528 | None:intergenic | 45.0% | |
| TCCCCCAAACAATCCTTAAC+AGG | - | chr3.4:90475431-90475450 | None:intergenic | 45.0% | |
| TCTCCCTGTATTGTTGAAGC+CGG | + | chr3.4:90475283-90475302 | MS.gene012899:CDS | 45.0% | |
| TGACACTAACACGTCAACAC+CGG | + | chr3.4:90473781-90473800 | MS.gene012899:intron | 45.0% | |
| TGCCTCTAAACTCTTTGACG+TGG | + | chr3.4:90475175-90475194 | MS.gene012899:intron | 45.0% | |
| TTAGCATGAGCCTCCATCAA+TGG | - | chr3.4:90474131-90474150 | None:intergenic | 45.0% | |
| TTCTTCAATGGCCTTTGTGG+TGG | + | chr3.4:90475320-90475339 | MS.gene012899:CDS | 45.0% | |
| ! | CCATGTTGTTTACTGCCACT+TGG | + | chr3.4:90475355-90475374 | MS.gene012899:CDS | 45.0% |
| !! | GTAAAGCTGTGATGATGGCA+TGG | + | chr3.4:90474099-90474118 | MS.gene012899:CDS | 45.0% |
| !! | TGCATTCCTGGAAAGCATCT+GGG | - | chr3.4:90475078-90475097 | None:intergenic | 45.0% |
| !! | TTGCATTCCTGGAAAGCATC+TGG | - | chr3.4:90475079-90475098 | None:intergenic | 45.0% |
| ATGGGAGAAGCCATTGATGG+AGG | + | chr3.4:90474118-90474137 | MS.gene012899:CDS | 50.0% | |
| CACCCGGCTTCAACAATACA+GGG | - | chr3.4:90475289-90475308 | None:intergenic | 50.0% | |
| CATTGTTGAGGCTCATCCTG+AGG | + | chr3.4:90474247-90474266 | MS.gene012899:CDS | 50.0% | |
| CTCAGGATGAGCCTCAACAA+TGG | - | chr3.4:90474249-90474268 | None:intergenic | 50.0% | |
| CTCCCTGTATTGTTGAAGCC+GGG | + | chr3.4:90475284-90475303 | MS.gene012899:CDS | 50.0% | |
| CTGTTTCCCAGATGCTTTCC+AGG | + | chr3.4:90475069-90475088 | MS.gene012899:intron | 50.0% | |
| GAGAGAAGGATGTCGAGGAT+GGG | - | chr3.4:90473603-90473622 | None:intergenic | 50.0% | |
| GCCCACGTCAAAGAGTTTAG+AGG | - | chr3.4:90475180-90475199 | None:intergenic | 50.0% | |
| GCCGACGTTACTCATTTCGA+CGG | + | chr3.4:90473531-90473550 | MS.gene012899:CDS | 50.0% | |
| GCCGTCGAAATGAGTAACGT+CGG | - | chr3.4:90473535-90473554 | None:intergenic | 50.0% | |
| GGAAGAAGAACTATGCGAGG+CGG | + | chr3.4:90473461-90473480 | MS.gene012899:CDS | 50.0% | |
| GTTACTCATTTCGACGGCGA+TGG | + | chr3.4:90473537-90473556 | MS.gene012899:CDS | 50.0% | |
| TTGCATTGCGAAATCACCGG+CGG | - | chr3.4:90473667-90473686 | None:intergenic | 50.0% | |
| TTGGGGGAAGAAGTTTGGGA+AGG | + | chr3.4:90475443-90475462 | MS.gene012899:CDS | 50.0% | |
| ! | GCACCGACACTTCTAATGGA+AGG | - | chr3.4:90473896-90473915 | None:intergenic | 50.0% |
| !! | GAAGGAGAAAGAGCGTTCCA+AGG | - | chr3.4:90473636-90473655 | None:intergenic | 50.0% |
| AACGTATGCTTCGCACGGGT+TGG | + | chr3.4:90474276-90474295 | MS.gene012899:CDS | 55.0% | |
| ACGTATGCTTCGCACGGGTT+GGG | + | chr3.4:90474277-90474296 | MS.gene012899:CDS | 55.0% | |
| CCACCCGGCTTCAACAATAC+AGG | - | chr3.4:90475290-90475309 | None:intergenic | 55.0% | |
| CCTGTATTGTTGAAGCCGGG+TGG | + | chr3.4:90475287-90475306 | MS.gene012899:CDS | 55.0% | |
| CTATGCGAGGCGGCGATTAA+AGG | + | chr3.4:90473471-90473490 | MS.gene012899:CDS | 55.0% | |
| CTGCAGACTGACAAACAGGG+AGG | - | chr3.4:90475505-90475524 | None:intergenic | 55.0% | |
| CTTATGCTCGCCGCAAAGCA+CGG | + | chr3.4:90473570-90473589 | MS.gene012899:CDS | 55.0% | |
| GAAATCACCGGCGGAAAGGT+TGG | - | chr3.4:90473658-90473677 | None:intergenic | 55.0% | |
| GAAATGAGTAACGTCGGCGC+CGG | - | chr3.4:90473529-90473548 | None:intergenic | 55.0% | |
| GGAGAGAAGGATGTCGAGGA+TGG | - | chr3.4:90473604-90473623 | None:intergenic | 55.0% | |
| GGCATGGGAGAAGCCATTGA+TGG | + | chr3.4:90474115-90474134 | MS.gene012899:CDS | 55.0% | |
| GGCGGCGATTAAAGGTGAGA+CGG | + | chr3.4:90473479-90473498 | MS.gene012899:CDS | 55.0% | |
| GTCGTCATAGTACTCCCCGT+AGG | - | chr3.4:90475243-90475262 | None:intergenic | 55.0% | |
| TCTCCTTCCAACCTTTCCGC+CGG | + | chr3.4:90473648-90473667 | MS.gene012899:CDS | 55.0% | |
| TGCTTTGCGGCGAGCATAAG+AGG | - | chr3.4:90473570-90473589 | None:intergenic | 55.0% | |
| TTGCGAAATCACCGGCGGAA+AGG | - | chr3.4:90473662-90473681 | None:intergenic | 55.0% | |
| !! | AAGAGCGTTCCAAGGAGCAC+CGG | - | chr3.4:90473628-90473647 | None:intergenic | 55.0% |
| CTCGACATCCTTCTCTCCGC+CGG | + | chr3.4:90473606-90473625 | MS.gene012899:CDS | 60.0% | |
| GGATGTCGAGGATGGGTGCA+TGG | - | chr3.4:90473596-90473615 | None:intergenic | 60.0% | |
| TCACCGGCGGAAAGGTTGGA+AGG | - | chr3.4:90473654-90473673 | None:intergenic | 60.0% | |
| ! | CGTATGCTTCGCACGGGTTG+GGG | + | chr3.4:90474278-90474297 | MS.gene012899:CDS | 60.0% |
| CGGCGGAGAGAAGGATGTCG+AGG | - | chr3.4:90473608-90473627 | None:intergenic | 65.0% | |
| GGGTGCATGGCCGTGCTTTG+CGG | - | chr3.4:90473583-90473602 | None:intergenic | 65.0% | |
| TTCTCTCCGCCGGTGCTCCT+TGG | + | chr3.4:90473616-90473635 | MS.gene012899:CDS | 65.0% | |
| !! | AAGGAGCACCGGCGGAGAGA+AGG | - | chr3.4:90473617-90473636 | None:intergenic | 65.0% |
| !! | AGCGTTCCAAGGAGCACCGG+CGG | - | chr3.4:90473625-90473644 | None:intergenic | 65.0% |
| !! | TCGCACGGGTTGGGGTGAGA+AGG | + | chr3.4:90474286-90474305 | MS.gene012899:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 90473456 | 90475538 | 90473456 | ID=MS.gene012899 |
| chr3.4 | mRNA | 90473456 | 90475538 | 90473456 | ID=MS.gene012899.t1;Parent=MS.gene012899 |
| chr3.4 | exon | 90473456 | 90473726 | 90473456 | ID=MS.gene012899.t1.exon1;Parent=MS.gene012899.t1 |
| chr3.4 | CDS | 90473456 | 90473726 | 90473456 | ID=cds.MS.gene012899.t1;Parent=MS.gene012899.t1 |
| chr3.4 | exon | 90473976 | 90474371 | 90473976 | ID=MS.gene012899.t1.exon2;Parent=MS.gene012899.t1 |
| chr3.4 | CDS | 90473976 | 90474371 | 90473976 | ID=cds.MS.gene012899.t1;Parent=MS.gene012899.t1 |
| chr3.4 | exon | 90475225 | 90475538 | 90475225 | ID=MS.gene012899.t1.exon3;Parent=MS.gene012899.t1 |
| chr3.4 | CDS | 90475225 | 90475538 | 90475225 | ID=cds.MS.gene012899.t1;Parent=MS.gene012899.t1 |
| Gene Sequence |
| Protein sequence |
