Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33297.t1 | RDX67490.1 | 98.2 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 1.00E-165 | 592.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33297.t1 | Q8LSN3 | 100.0 | 276 | 0 | 0 | 1 | 276 | 1 | 276 | 5.5e-168 | 591.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33297.t1 | A0A371EN59 | 98.2 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 7.4e-166 | 592.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050085 | MS.gene33297 | 0.802071 | 6.67E-49 | -1.69E-46 |
MS.gene050359 | MS.gene33297 | 0.825166 | 5.44E-54 | -1.69E-46 |
MS.gene050646 | MS.gene33297 | 0.812112 | 5.00E-51 | -1.69E-46 |
MS.gene052307 | MS.gene33297 | 0.813503 | 2.48E-51 | -1.69E-46 |
MS.gene052609 | MS.gene33297 | 0.857991 | 1.12E-62 | -1.69E-46 |
MS.gene052994 | MS.gene33297 | 0.800603 | 1.33E-48 | -1.69E-46 |
MS.gene053143 | MS.gene33297 | 0.820692 | 6.00E-53 | -1.69E-46 |
MS.gene059007 | MS.gene33297 | 0.819053 | 1.42E-52 | -1.69E-46 |
MS.gene060933 | MS.gene33297 | 0.809398 | 1.93E-50 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33297.t1 | MTR_1g039380 | 100.000 | 276 | 0 | 0 | 1 | 276 | 1 | 276 | 0.0 | 583 |
MS.gene33297.t1 | MTR_1g039380 | 100.000 | 249 | 0 | 0 | 28 | 276 | 4 | 252 | 0.0 | 528 |
MS.gene33297.t1 | MTR_5g093990 | 63.768 | 276 | 98 | 2 | 2 | 276 | 3 | 277 | 2.92e-135 | 387 |
MS.gene33297.t1 | MTR_8g062430 | 60.727 | 275 | 107 | 1 | 2 | 276 | 6 | 279 | 1.05e-127 | 368 |
MS.gene33297.t1 | MTR_8g085610 | 60.440 | 273 | 107 | 1 | 2 | 274 | 8 | 279 | 1.61e-126 | 365 |
MS.gene33297.t1 | MTR_5g037200 | 59.636 | 275 | 110 | 1 | 2 | 276 | 6 | 279 | 1.87e-126 | 365 |
MS.gene33297.t1 | MTR_7g107310 | 59.341 | 273 | 110 | 1 | 2 | 274 | 13 | 284 | 4.20e-126 | 364 |
MS.gene33297.t1 | MTR_8g085610 | 61.961 | 255 | 96 | 1 | 20 | 274 | 2 | 255 | 1.04e-122 | 355 |
MS.gene33297.t1 | MTR_1g079950 | 44.485 | 272 | 147 | 4 | 15 | 284 | 25 | 294 | 5.98e-90 | 273 |
MS.gene33297.t1 | MTR_1g079950 | 44.485 | 272 | 147 | 4 | 15 | 284 | 25 | 294 | 6.20e-90 | 273 |
MS.gene33297.t1 | MTR_1g079950 | 44.485 | 272 | 147 | 4 | 15 | 284 | 25 | 294 | 7.71e-90 | 273 |
MS.gene33297.t1 | MTR_1g079950 | 44.485 | 272 | 147 | 4 | 15 | 284 | 54 | 323 | 1.08e-89 | 273 |
MS.gene33297.t1 | MTR_1g074880 | 45.455 | 264 | 141 | 3 | 15 | 277 | 25 | 286 | 1.33e-89 | 272 |
MS.gene33297.t1 | MTR_1g074880 | 45.455 | 264 | 141 | 3 | 15 | 277 | 25 | 286 | 2.07e-89 | 271 |
MS.gene33297.t1 | MTR_5g081230 | 43.929 | 280 | 153 | 4 | 7 | 284 | 34 | 311 | 3.79e-89 | 271 |
MS.gene33297.t1 | MTR_8g098980 | 44.014 | 284 | 148 | 5 | 3 | 277 | 6 | 287 | 6.75e-89 | 270 |
MS.gene33297.t1 | MTR_7g116380 | 44.118 | 272 | 148 | 4 | 15 | 284 | 25 | 294 | 1.38e-88 | 269 |
MS.gene33297.t1 | MTR_7g116380 | 44.118 | 272 | 148 | 4 | 15 | 284 | 25 | 294 | 1.66e-88 | 269 |
MS.gene33297.t1 | MTR_8g005010 | 43.346 | 263 | 146 | 3 | 15 | 276 | 23 | 283 | 3.61e-88 | 267 |
MS.gene33297.t1 | MTR_7g112870 | 44.484 | 281 | 148 | 4 | 3 | 277 | 10 | 288 | 1.44e-87 | 266 |
MS.gene33297.t1 | MTR_1g043240 | 43.750 | 272 | 149 | 4 | 15 | 284 | 25 | 294 | 8.07e-87 | 265 |
MS.gene33297.t1 | MTR_1g074880 | 47.826 | 230 | 117 | 3 | 49 | 277 | 4 | 231 | 5.51e-81 | 248 |
MS.gene33297.t1 | MTR_1g074880 | 47.826 | 230 | 117 | 3 | 49 | 277 | 4 | 231 | 5.64e-81 | 248 |
MS.gene33297.t1 | MTR_1g079950 | 44.867 | 263 | 137 | 5 | 24 | 284 | 12 | 268 | 2.11e-80 | 248 |
MS.gene33297.t1 | MTR_5g037200 | 58.564 | 181 | 75 | 0 | 2 | 182 | 6 | 186 | 4.42e-77 | 236 |
MS.gene33297.t1 | MTR_3g452710 | 43.600 | 250 | 132 | 5 | 40 | 282 | 216 | 463 | 5.47e-58 | 195 |
MS.gene33297.t1 | MTR_3g452710 | 43.600 | 250 | 132 | 5 | 40 | 282 | 283 | 530 | 3.02e-57 | 194 |
MS.gene33297.t1 | MTR_2g100130 | 41.667 | 252 | 137 | 6 | 40 | 288 | 134 | 378 | 1.43e-54 | 184 |
MS.gene33297.t1 | MTR_2g087530 | 36.577 | 298 | 166 | 8 | 6 | 287 | 541 | 831 | 9.02e-54 | 190 |
MS.gene33297.t1 | MTR_2g087530 | 36.577 | 298 | 166 | 8 | 6 | 287 | 654 | 944 | 1.74e-53 | 189 |
MS.gene33297.t1 | MTR_2g100130 | 41.667 | 252 | 137 | 6 | 40 | 288 | 204 | 448 | 2.31e-53 | 182 |
MS.gene33297.t1 | MTR_2g100130 | 42.105 | 247 | 133 | 6 | 45 | 288 | 238 | 477 | 2.46e-53 | 183 |
MS.gene33297.t1 | MTR_2g100130 | 42.105 | 247 | 133 | 6 | 45 | 288 | 248 | 487 | 3.04e-53 | 183 |
MS.gene33297.t1 | MTR_2g100160 | 41.045 | 268 | 144 | 7 | 28 | 288 | 137 | 397 | 3.06e-53 | 181 |
MS.gene33297.t1 | MTR_2g100130 | 42.105 | 247 | 133 | 6 | 45 | 288 | 248 | 487 | 5.39e-53 | 182 |
MS.gene33297.t1 | MTR_4g050540 | 34.921 | 315 | 182 | 9 | 6 | 305 | 659 | 965 | 4.73e-52 | 185 |
MS.gene33297.t1 | MTR_1g089370 | 37.634 | 279 | 157 | 7 | 6 | 269 | 538 | 814 | 7.02e-52 | 184 |
MS.gene33297.t1 | MTR_2g100130 | 41.667 | 252 | 136 | 7 | 40 | 288 | 204 | 447 | 7.97e-52 | 179 |
MS.gene33297.t1 | MTR_2g100130 | 42.913 | 254 | 135 | 8 | 45 | 293 | 248 | 496 | 1.01e-51 | 179 |
MS.gene33297.t1 | MTR_2g100130 | 42.105 | 247 | 132 | 7 | 45 | 288 | 248 | 486 | 1.45e-51 | 179 |
MS.gene33297.t1 | MTR_8g072600 | 34.589 | 292 | 129 | 12 | 28 | 259 | 105 | 394 | 4.23e-35 | 133 |
MS.gene33297.t1 | MTR_8g072600 | 35.833 | 240 | 106 | 9 | 28 | 221 | 105 | 342 | 5.67e-32 | 123 |
MS.gene33297.t1 | MTR_2g099710 | 36.788 | 193 | 101 | 8 | 24 | 197 | 214 | 404 | 2.03e-22 | 98.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33297.t1 | AT1G50370 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 574 |
MS.gene33297.t1 | AT3G19980 | 97.464 | 276 | 7 | 0 | 1 | 276 | 1 | 276 | 0.0 | 573 |
MS.gene33297.t1 | AT4G26720 | 59.547 | 309 | 118 | 3 | 2 | 309 | 3 | 305 | 4.13e-140 | 400 |
MS.gene33297.t1 | AT5G55260 | 64.130 | 276 | 97 | 2 | 2 | 276 | 3 | 277 | 3.24e-138 | 395 |
MS.gene33297.t1 | AT5G55260 | 55.836 | 317 | 97 | 3 | 2 | 276 | 3 | 318 | 2.22e-129 | 374 |
MS.gene33297.t1 | AT3G58500 | 60.584 | 274 | 107 | 1 | 1 | 274 | 12 | 284 | 1.04e-128 | 371 |
MS.gene33297.t1 | AT2G42500 | 60.584 | 274 | 107 | 1 | 1 | 274 | 12 | 284 | 1.50e-128 | 370 |
MS.gene33297.t1 | AT1G69960 | 60.364 | 275 | 108 | 1 | 2 | 276 | 7 | 280 | 2.02e-128 | 370 |
MS.gene33297.t1 | AT1G10430 | 59.928 | 277 | 110 | 1 | 2 | 278 | 6 | 281 | 1.00e-127 | 368 |
MS.gene33297.t1 | AT1G10430 | 59.928 | 277 | 110 | 1 | 2 | 278 | 6 | 281 | 1.00e-127 | 368 |
MS.gene33297.t1 | AT1G59830 | 59.567 | 277 | 111 | 1 | 2 | 278 | 6 | 281 | 1.68e-126 | 365 |
MS.gene33297.t1 | AT1G59830 | 59.504 | 242 | 98 | 0 | 2 | 243 | 6 | 247 | 3.53e-110 | 322 |
MS.gene33297.t1 | AT2G42500 | 56.466 | 232 | 99 | 2 | 44 | 274 | 7 | 237 | 1.02e-96 | 288 |
MS.gene33297.t1 | AT2G29400 | 46.565 | 262 | 138 | 2 | 15 | 276 | 42 | 301 | 2.62e-92 | 278 |
MS.gene33297.t1 | AT2G39840 | 45.956 | 272 | 143 | 4 | 15 | 284 | 39 | 308 | 3.77e-90 | 273 |
MS.gene33297.t1 | AT5G27840 | 43.919 | 296 | 157 | 5 | 3 | 291 | 14 | 307 | 7.25e-90 | 272 |
MS.gene33297.t1 | AT5G27840 | 44.262 | 305 | 154 | 6 | 3 | 293 | 14 | 316 | 9.27e-90 | 272 |
MS.gene33297.t1 | AT5G27840 | 44.262 | 305 | 154 | 6 | 3 | 293 | 14 | 316 | 9.27e-90 | 272 |
MS.gene33297.t1 | AT5G27840 | 43.919 | 296 | 157 | 5 | 3 | 291 | 14 | 307 | 1.32e-89 | 272 |
MS.gene33297.t1 | AT5G59160 | 43.929 | 280 | 150 | 5 | 16 | 293 | 36 | 310 | 9.54e-89 | 269 |
MS.gene33297.t1 | AT5G59160 | 43.929 | 280 | 150 | 5 | 16 | 293 | 36 | 310 | 9.54e-89 | 269 |
MS.gene33297.t1 | AT5G59160 | 43.929 | 280 | 150 | 5 | 16 | 293 | 36 | 310 | 9.54e-89 | 269 |
MS.gene33297.t1 | AT3G46820 | 44.211 | 285 | 154 | 5 | 3 | 284 | 22 | 304 | 2.18e-88 | 268 |
MS.gene33297.t1 | AT4G11240 | 44.610 | 269 | 145 | 4 | 10 | 277 | 22 | 287 | 1.93e-87 | 266 |
MS.gene33297.t1 | AT5G43380 | 45.455 | 264 | 141 | 3 | 15 | 277 | 25 | 286 | 2.16e-87 | 266 |
MS.gene33297.t1 | AT5G43380 | 45.455 | 264 | 141 | 3 | 15 | 277 | 25 | 286 | 3.42e-87 | 266 |
MS.gene33297.t1 | AT5G43380 | 45.455 | 264 | 141 | 3 | 15 | 277 | 25 | 286 | 4.17e-87 | 265 |
MS.gene33297.t1 | AT3G05580 | 44.128 | 281 | 149 | 4 | 3 | 277 | 14 | 292 | 8.86e-87 | 265 |
MS.gene33297.t1 | AT1G64040 | 44.318 | 264 | 144 | 3 | 15 | 277 | 26 | 287 | 1.13e-86 | 264 |
MS.gene33297.t1 | AT3G05580 | 45.833 | 240 | 123 | 3 | 3 | 236 | 14 | 252 | 1.19e-76 | 236 |
MS.gene33297.t1 | AT2G42500 | 60.119 | 168 | 62 | 2 | 1 | 165 | 12 | 177 | 4.77e-66 | 206 |
MS.gene33297.t1 | AT2G42500 | 59.877 | 162 | 62 | 1 | 1 | 159 | 12 | 173 | 5.32e-66 | 206 |
MS.gene33297.t1 | AT2G42500 | 62.338 | 154 | 55 | 1 | 1 | 151 | 12 | 165 | 1.24e-65 | 205 |
MS.gene33297.t1 | AT2G42810 | 40.602 | 266 | 145 | 6 | 28 | 287 | 202 | 460 | 8.41e-60 | 200 |
MS.gene33297.t1 | AT2G42810 | 40.602 | 266 | 145 | 6 | 28 | 287 | 202 | 460 | 8.41e-60 | 200 |
MS.gene33297.t1 | AT2G42810 | 40.602 | 266 | 145 | 6 | 28 | 287 | 202 | 460 | 8.41e-60 | 200 |
MS.gene33297.t1 | AT2G42810 | 40.602 | 266 | 145 | 6 | 28 | 287 | 255 | 513 | 5.50e-59 | 199 |
MS.gene33297.t1 | AT2G42810 | 40.602 | 266 | 145 | 6 | 28 | 287 | 256 | 514 | 5.91e-59 | 199 |
MS.gene33297.t1 | AT1G03445 | 38.080 | 323 | 176 | 10 | 20 | 327 | 480 | 793 | 7.33e-58 | 200 |
MS.gene33297.t1 | AT1G03445 | 39.322 | 295 | 157 | 9 | 20 | 299 | 480 | 767 | 1.54e-57 | 199 |
MS.gene33297.t1 | AT4G03080 | 38.869 | 283 | 152 | 8 | 20 | 287 | 554 | 830 | 6.53e-55 | 193 |
MS.gene33297.t1 | AT2G27210 | 35.354 | 297 | 171 | 8 | 6 | 287 | 660 | 950 | 2.23e-50 | 181 |
MS.gene33297.t1 | AT2G27210 | 35.354 | 297 | 171 | 8 | 6 | 287 | 665 | 955 | 2.60e-50 | 180 |
MS.gene33297.t1 | AT1G08420 | 35.017 | 297 | 172 | 8 | 6 | 287 | 671 | 961 | 1.29e-49 | 178 |
MS.gene33297.t1 | AT1G08420 | 35.017 | 297 | 172 | 8 | 6 | 287 | 676 | 966 | 1.38e-49 | 178 |
MS.gene33297.t1 | AT5G63870 | 35.448 | 268 | 120 | 10 | 43 | 259 | 77 | 342 | 2.41e-31 | 122 |
MS.gene33297.t1 | AT5G63870 | 35.448 | 268 | 120 | 10 | 43 | 259 | 77 | 342 | 2.41e-31 | 122 |
MS.gene33297.t1 | AT1G48120 | 32.226 | 301 | 140 | 9 | 19 | 259 | 629 | 925 | 4.72e-30 | 121 |
MS.gene33297.t1 | AT5G63870 | 37.500 | 216 | 96 | 7 | 43 | 221 | 77 | 290 | 1.73e-28 | 112 |
MS.gene33297.t1 | AT5G10900 | 31.646 | 237 | 135 | 7 | 24 | 235 | 199 | 433 | 1.05e-23 | 102 |
MS.gene33297.t1 | AT5G10900 | 31.646 | 237 | 135 | 7 | 24 | 235 | 199 | 433 | 1.26e-23 | 102 |
MS.gene33297.t1 | AT5G10900 | 31.646 | 237 | 135 | 7 | 24 | 235 | 199 | 433 | 1.28e-23 | 102 |
Find 67 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTCTCTTTCGAAGTTTCT+TGG | 0.212495 | 1.1:-24026674 | None:intergenic |
TCTTAGTTTCAATGAAAATA+TGG | 0.227077 | 1.1:+24022654 | MS.gene33297:CDS |
CCACATCGGTAACAATAATT+AGG | 0.234485 | 1.1:-24022616 | None:intergenic |
GTGTGAGTTGTCTACTTTCA+TGG | 0.258082 | 1.1:-24019525 | None:intergenic |
TTTCATGGTTTCCACGTAGA+AGG | 0.307041 | 1.1:-24019510 | None:intergenic |
GATGAATGCCAGAGAAAGTA+TGG | 0.349004 | 1.1:+24020259 | MS.gene33297:CDS |
ATGTCACCACAAACAGTTAC+TGG | 0.360532 | 1.1:-24018771 | None:intergenic |
ACCCAGGTGCTTTGTGTTCA+CGG | 0.361024 | 1.1:+24020487 | MS.gene33297:intron |
TAGCATTTCCATACTTTCTC+TGG | 0.362451 | 1.1:-24020267 | None:intergenic |
CGTAGAAGGGTTATATTAGC+TGG | 0.378323 | 1.1:-24019496 | None:intergenic |
ACACTCTCTGCAATTATAGA+TGG | 0.378687 | 1.1:+24020328 | MS.gene33297:CDS |
AAGTACATGTTCCAAGATAA+AGG | 0.383237 | 1.1:+24022048 | MS.gene33297:CDS |
CAGTTACAAGGCCTTTATCT+TGG | 0.389398 | 1.1:-24022059 | None:intergenic |
TGGTCAATTGTTCTGATGTC+TGG | 0.394556 | 1.1:-24020520 | None:intergenic |
GCCCATGTTTCAATATCTTC+AGG | 0.398413 | 1.1:-24021833 | None:intergenic |
GTGAAGAACGGGATCATGTT+TGG | 0.402875 | 1.1:+24026604 | MS.gene33297:intron |
TATTCCTTGCTCTACAAGTA+AGG | 0.434271 | 1.1:-24026712 | None:intergenic |
TGGTGATCTGCTATCAGCTT+TGG | 0.437965 | 1.1:-24026486 | None:intergenic |
CTCCACATAAGATCACAAAA+TGG | 0.447030 | 1.1:-24021806 | None:intergenic |
GGTTAAAGAGATCTTAATTG+AGG | 0.467806 | 1.1:+24018722 | MS.gene33297:intron |
CTTTAACCTTCGAGATCCAT+TGG | 0.482031 | 1.1:-24018382 | None:intergenic |
GATCTGCTATCAGCTTTGGC+TGG | 0.482864 | 1.1:-24026482 | None:intergenic |
ACTGTTTGTGGTGACATTCA+TGG | 0.492582 | 1.1:+24018777 | MS.gene33297:CDS |
GCAGTCAGTCCACGTGGAGC+TGG | 0.503063 | 1.1:+24021854 | MS.gene33297:CDS |
TTCAGATGCTTACAGTTACA+AGG | 0.508425 | 1.1:-24022071 | None:intergenic |
AGAATTTGTGTTCTTCGCGT+TGG | 0.522203 | 1.1:-24026536 | None:intergenic |
TTCATGGTTTCCACGTAGAA+GGG | 0.527118 | 1.1:-24019509 | None:intergenic |
AGTCTCGGGCACGTGCCCAC+CGG | 0.531838 | 1.1:-24018832 | None:intergenic |
AATAGTCCAGTAACTGTTTG+TGG | 0.542664 | 1.1:+24018765 | MS.gene33297:CDS |
TGGATCCCGGGTTACATCTG+AGG | 0.546373 | 1.1:+24021886 | MS.gene33297:CDS |
TTGTTCTGATGTCTGGAGAA+AGG | 0.553674 | 1.1:-24020513 | None:intergenic |
ACAGTTACTGGACTATTCAC+AGG | 0.560124 | 1.1:-24018759 | None:intergenic |
TCAGTCCACGTGGAGCTGGT+TGG | 0.561248 | 1.1:+24021858 | MS.gene33297:CDS |
CCTAATTATTGTTACCGATG+TGG | 0.568015 | 1.1:+24022616 | MS.gene33297:CDS |
AGTATGGAAATGCTAATGCT+TGG | 0.570861 | 1.1:+24020275 | MS.gene33297:CDS |
GTTCGTCTTCGAGAAGATGT+TGG | 0.585150 | 1.1:-24018409 | None:intergenic |
TCATGTTTGGTAAATGTGAT+CGG | 0.586693 | 1.1:+24026617 | MS.gene33297:CDS |
TGGATCTCGAAGGTTAAAGA+TGG | 0.588605 | 1.1:+24018386 | MS.gene33297:CDS |
ACCAAGAAACTTCGAAAGAG+AGG | 0.588612 | 1.1:+24026673 | MS.gene33297:CDS |
TCCTGAAGATATTGAAACAT+GGG | 0.588789 | 1.1:+24021832 | MS.gene33297:CDS |
TTCTTCCAAGGCAGAGATAG+CGG | 0.592807 | 1.1:+24026455 | MS.gene33297:intron |
GTGCTCGACAAACAAGATCA+AGG | 0.593508 | 1.1:-24022002 | None:intergenic |
GTAGAAGGGTTATATTAGCT+GGG | 0.598366 | 1.1:-24019495 | None:intergenic |
GAGATATGGATTTGGACCAA+TGG | 0.609365 | 1.1:+24018366 | None:intergenic |
GCACATCAACTTGTACAAGA+AGG | 0.609781 | 1.1:+24022021 | MS.gene33297:CDS |
TCACAAAATGGCCCCTCGTG+AGG | 0.613649 | 1.1:-24021794 | None:intergenic |
TAGGGTGACTTTGTTGATCG+CGG | 0.614888 | 1.1:+24018968 | MS.gene33297:intron |
ATCCTGAAGATATTGAAACA+TGG | 0.620272 | 1.1:+24021831 | MS.gene33297:CDS |
ACATTACCTCAGATGTAACC+CGG | 0.622692 | 1.1:-24021892 | None:intergenic |
GAACTGTGAAATTCCTCACG+AGG | 0.623314 | 1.1:+24021781 | MS.gene33297:CDS |
AACTGTGAAATTCCTCACGA+GGG | 0.643578 | 1.1:+24021782 | MS.gene33297:CDS |
TTTGGACCAATGGATCTCGA+AGG | 0.650316 | 1.1:+24018376 | MS.gene33297:CDS |
CAAATTCTACATGACGATGG+TGG | 0.654724 | 1.1:+24026551 | MS.gene33297:CDS |
TGATCGGACTGAGAAGATTG+AGG | 0.661662 | 1.1:+24026633 | MS.gene33297:CDS |
AACTTCGAAAGAGAGGAGTG+TGG | 0.663621 | 1.1:+24026680 | MS.gene33297:CDS |
GACAGATAAGAGTCATTGAG+CGG | 0.664068 | 1.1:+24021759 | MS.gene33297:intron |
CATTACCTCAGATGTAACCC+GGG | 0.673485 | 1.1:-24021891 | None:intergenic |
AGACATCAGAACAATTGACC+AGG | 0.675885 | 1.1:+24020522 | MS.gene33297:CDS |
ACATGGGCAGTCAGTCCACG+TGG | 0.685712 | 1.1:+24021848 | MS.gene33297:CDS |
TAGAAGCTACATTTCCACAT+CGG | 0.686268 | 1.1:-24022630 | None:intergenic |
TGTAAGATAGTCGAAAACAT+CGG | 0.689517 | 1.1:-24020308 | None:intergenic |
ACTGTGAAATTCCTCACGAG+GGG | 0.691236 | 1.1:+24021783 | MS.gene33297:CDS |
TGAAAGTAGACAACTCACAC+AGG | 0.696061 | 1.1:+24019528 | MS.gene33297:CDS |
ACACAAATTCTACATGACGA+TGG | 0.697464 | 1.1:+24026548 | MS.gene33297:CDS |
GCTAATATAACCCTTCTACG+TGG | 0.708247 | 1.1:+24019499 | MS.gene33297:CDS |
AAAAGCCAACCAGCTCCACG+TGG | 0.711838 | 1.1:-24021863 | None:intergenic |
CAGGTGCTTTGTGTTCACGG+TGG | 0.738287 | 1.1:+24020490 | MS.gene33297:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 24018371 | 24026723 | 24018371 | ID=MS.gene33297 |
chr1.1 | mRNA | 24018371 | 24026723 | 24018371 | ID=MS.gene33297.t1;Parent=MS.gene33297 |
chr1.1 | exon | 24018371 | 24018451 | 24018371 | ID=MS.gene33297.t1.exon1;Parent=MS.gene33297.t1 |
chr1.1 | CDS | 24018371 | 24018451 | 24018371 | ID=cds.MS.gene33297.t1;Parent=MS.gene33297.t1 |
chr1.1 | exon | 24018723 | 24018869 | 24018723 | ID=MS.gene33297.t1.exon2;Parent=MS.gene33297.t1 |
chr1.1 | CDS | 24018723 | 24018869 | 24018723 | ID=cds.MS.gene33297.t1;Parent=MS.gene33297.t1 |
chr1.1 | exon | 24018971 | 24019038 | 24018971 | ID=MS.gene33297.t1.exon3;Parent=MS.gene33297.t1 |
chr1.1 | CDS | 24018971 | 24019038 | 24018971 | ID=cds.MS.gene33297.t1;Parent=MS.gene33297.t1 |
chr1.1 | exon | 24019492 | 24019549 | 24019492 | ID=MS.gene33297.t1.exon4;Parent=MS.gene33297.t1 |
chr1.1 | CDS | 24019492 | 24019549 | 24019492 | ID=cds.MS.gene33297.t1;Parent=MS.gene33297.t1 |
chr1.1 | exon | 24020244 | 24020354 | 24020244 | ID=MS.gene33297.t1.exon5;Parent=MS.gene33297.t1 |
chr1.1 | CDS | 24020244 | 24020354 | 24020244 | ID=cds.MS.gene33297.t1;Parent=MS.gene33297.t1 |
chr1.1 | exon | 24020493 | 24020543 | 24020493 | ID=MS.gene33297.t1.exon6;Parent=MS.gene33297.t1 |
chr1.1 | CDS | 24020493 | 24020543 | 24020493 | ID=cds.MS.gene33297.t1;Parent=MS.gene33297.t1 |
chr1.1 | exon | 24021764 | 24021907 | 24021764 | ID=MS.gene33297.t1.exon7;Parent=MS.gene33297.t1 |
chr1.1 | CDS | 24021764 | 24021907 | 24021764 | ID=cds.MS.gene33297.t1;Parent=MS.gene33297.t1 |
chr1.1 | exon | 24021985 | 24022080 | 24021985 | ID=MS.gene33297.t1.exon8;Parent=MS.gene33297.t1 |
chr1.1 | CDS | 24021985 | 24022080 | 24021985 | ID=cds.MS.gene33297.t1;Parent=MS.gene33297.t1 |
chr1.1 | exon | 24022604 | 24022675 | 24022604 | ID=MS.gene33297.t1.exon9;Parent=MS.gene33297.t1 |
chr1.1 | CDS | 24022604 | 24022675 | 24022604 | ID=cds.MS.gene33297.t1;Parent=MS.gene33297.t1 |
chr1.1 | exon | 24026465 | 24026572 | 24026465 | ID=MS.gene33297.t1.exon10;Parent=MS.gene33297.t1 |
chr1.1 | CDS | 24026465 | 24026572 | 24026465 | ID=cds.MS.gene33297.t1;Parent=MS.gene33297.t1 |
chr1.1 | exon | 24026610 | 24026723 | 24026610 | ID=MS.gene33297.t1.exon11;Parent=MS.gene33297.t1 |
chr1.1 | CDS | 24026610 | 24026723 | 24026610 | ID=cds.MS.gene33297.t1;Parent=MS.gene33297.t1 |
Gene Sequence |
Protein sequence |