AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91142

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91142.t1 MTR_1g039380 98.577 281 4 0 1 281 1 281 0.0 581
MS.gene91142.t1 MTR_1g039380 98.425 254 4 0 28 281 4 257 0.0 526
MS.gene91142.t1 MTR_5g093990 63.669 278 99 2 2 278 3 279 1.94e-136 387
MS.gene91142.t1 MTR_8g062430 60.289 277 109 1 2 278 6 281 3.51e-128 367
MS.gene91142.t1 MTR_8g085610 60.440 273 107 1 2 274 8 279 3.10e-127 364
MS.gene91142.t1 MTR_5g037200 59.206 277 112 1 2 278 6 281 5.96e-127 363
MS.gene91142.t1 MTR_7g107310 59.341 273 110 1 2 274 13 284 7.84e-127 363
MS.gene91142.t1 MTR_8g085610 61.961 255 96 1 20 274 2 255 2.44e-123 353
MS.gene91142.t1 MTR_1g079950 45.247 263 141 3 15 276 25 285 1.34e-90 272
MS.gene91142.t1 MTR_1g079950 45.247 263 141 3 15 276 25 285 1.39e-90 272
MS.gene91142.t1 MTR_1g079950 45.247 263 141 3 15 276 25 285 1.51e-90 271
MS.gene91142.t1 MTR_8g098980 44.366 284 147 5 3 277 6 287 2.45e-90 271
MS.gene91142.t1 MTR_1g074880 45.455 264 141 3 15 277 25 286 2.81e-90 271
MS.gene91142.t1 MTR_1g074880 45.455 264 141 3 15 277 25 286 2.82e-90 271
MS.gene91142.t1 MTR_1g079950 45.247 263 141 3 15 276 54 314 2.85e-90 272
MS.gene91142.t1 MTR_5g081230 44.649 271 147 3 7 276 34 302 9.20e-90 270
MS.gene91142.t1 MTR_7g116380 44.867 263 142 3 15 276 25 285 3.63e-89 268
MS.gene91142.t1 MTR_7g116380 44.867 263 142 3 15 276 25 285 3.70e-89 268
MS.gene91142.t1 MTR_8g005010 43.346 263 146 3 15 276 23 283 1.27e-88 266
MS.gene91142.t1 MTR_7g112870 44.484 281 148 4 3 277 10 288 3.47e-88 265
MS.gene91142.t1 MTR_1g043240 44.487 263 143 3 15 276 25 285 1.97e-87 263
MS.gene91142.t1 MTR_1g074880 47.826 230 117 3 49 277 4 231 1.35e-81 247
MS.gene91142.t1 MTR_1g074880 47.826 230 117 3 49 277 4 231 1.38e-81 247
MS.gene91142.t1 MTR_1g079950 45.669 254 131 4 24 276 12 259 4.47e-81 247
MS.gene91142.t1 MTR_5g037200 58.564 181 75 0 2 182 6 186 9.42e-78 235
MS.gene91142.t1 MTR_3g452710 45.106 235 125 4 40 272 216 448 3.48e-58 193
MS.gene91142.t1 MTR_3g452710 45.106 235 125 4 40 272 283 515 1.91e-57 192
MS.gene91142.t1 MTR_2g100130 43.220 236 129 5 40 272 134 367 8.93e-55 182
MS.gene91142.t1 MTR_2g087530 36.552 290 165 7 6 279 541 827 8.94e-54 187
MS.gene91142.t1 MTR_2g100130 43.220 236 129 5 40 272 204 437 8.99e-54 181
MS.gene91142.t1 MTR_2g087530 36.552 290 165 7 6 279 654 940 1.31e-53 187
MS.gene91142.t1 MTR_2g100130 43.723 231 125 5 45 272 238 466 1.56e-53 181
MS.gene91142.t1 MTR_2g100130 43.723 231 125 5 45 272 248 476 1.71e-53 181
MS.gene91142.t1 MTR_2g100130 43.220 236 129 5 40 272 243 476 2.28e-53 181
MS.gene91142.t1 MTR_1g089370 37.634 279 157 7 6 269 538 814 9.74e-53 184
MS.gene91142.t1 MTR_2g100160 44.068 236 127 5 40 272 153 386 1.07e-52 177
MS.gene91142.t1 MTR_2g100130 43.220 236 128 6 40 272 204 436 2.99e-52 177
MS.gene91142.t1 MTR_2g100130 43.220 236 128 6 40 272 243 475 5.09e-52 177
MS.gene91142.t1 MTR_4g050540 35.640 289 169 7 6 279 659 945 1.82e-51 181
MS.gene91142.t1 MTR_2g100130 44.196 224 120 5 40 260 243 464 2.55e-51 175
MS.gene91142.t1 MTR_8g072600 34.589 292 129 12 28 259 105 394 1.06e-35 133
MS.gene91142.t1 MTR_8g072600 35.833 240 106 9 28 221 105 342 2.24e-32 122
MS.gene91142.t1 MTR_2g099710 36.979 192 100 8 24 196 214 403 4.52e-23 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91142.t1 AT1G50370 96.441 281 10 0 1 281 1 281 0.0 573
MS.gene91142.t1 AT3G19980 96.085 281 11 0 1 281 1 281 0.0 571
MS.gene91142.t1 AT4G26720 65.108 278 95 2 2 278 3 279 1.66e-140 398
MS.gene91142.t1 AT5G55260 64.029 278 98 2 2 278 3 279 1.77e-139 395
MS.gene91142.t1 AT5G55260 55.799 319 98 3 2 278 3 320 1.31e-130 374
MS.gene91142.t1 AT3G58500 60.584 274 107 1 1 274 12 284 1.90e-129 370
MS.gene91142.t1 AT2G42500 60.584 274 107 1 1 274 12 284 4.00e-129 369
MS.gene91142.t1 AT1G69960 59.928 277 110 1 2 278 7 282 7.30e-129 368
MS.gene91142.t1 AT1G10430 59.928 277 110 1 2 278 6 281 4.73e-128 366
MS.gene91142.t1 AT1G10430 59.928 277 110 1 2 278 6 281 4.73e-128 366
MS.gene91142.t1 AT1G59830 59.567 277 111 1 2 278 6 281 4.96e-127 363
MS.gene91142.t1 AT1G59830 59.504 242 98 0 2 243 6 247 1.04e-110 320
MS.gene91142.t1 AT2G42500 56.466 232 99 2 44 274 7 237 2.11e-97 287
MS.gene91142.t1 AT2G29400 46.565 262 138 2 15 276 42 301 8.85e-93 277
MS.gene91142.t1 AT2G39840 46.768 263 137 3 15 276 39 299 9.73e-91 272
MS.gene91142.t1 AT5G27840 45.552 281 145 4 3 277 14 292 1.79e-90 271
MS.gene91142.t1 AT5G27840 45.552 281 145 4 3 277 14 292 2.09e-90 271
MS.gene91142.t1 AT5G27840 45.552 281 145 4 3 277 14 292 2.94e-90 271
MS.gene91142.t1 AT5G27840 45.552 281 145 4 3 277 14 292 2.94e-90 271
MS.gene91142.t1 AT5G59160 45.038 262 141 3 16 276 36 295 3.84e-89 268
MS.gene91142.t1 AT5G59160 45.038 262 141 3 16 276 36 295 3.84e-89 268
MS.gene91142.t1 AT5G59160 45.038 262 141 3 16 276 36 295 3.84e-89 268
MS.gene91142.t1 AT3G46820 44.928 276 148 4 3 276 22 295 3.88e-89 268
MS.gene91142.t1 AT4G11240 44.981 269 144 4 10 277 22 287 8.70e-89 267
MS.gene91142.t1 AT5G43380 45.833 264 140 3 15 277 25 286 9.91e-89 267
MS.gene91142.t1 AT5G43380 45.833 264 140 3 15 277 25 286 1.78e-88 266
MS.gene91142.t1 AT5G43380 45.833 264 140 3 15 277 25 286 1.85e-88 266
MS.gene91142.t1 AT1G64040 44.697 264 143 3 15 277 26 287 5.29e-88 265
MS.gene91142.t1 AT3G05580 44.128 281 149 4 3 277 14 292 1.35e-87 264
MS.gene91142.t1 AT3G05580 45.833 240 123 3 3 236 14 252 2.29e-77 236
MS.gene91142.t1 AT2G42500 60.119 168 62 2 1 165 12 177 8.37e-67 206
MS.gene91142.t1 AT2G42500 59.877 162 62 1 1 159 12 173 8.74e-67 206
MS.gene91142.t1 AT2G42500 62.338 154 55 1 1 151 12 165 2.54e-66 204
MS.gene91142.t1 AT2G42810 44.255 235 127 4 40 272 218 450 5.36e-60 198
MS.gene91142.t1 AT2G42810 44.255 235 127 4 40 272 218 450 5.36e-60 198
MS.gene91142.t1 AT2G42810 44.255 235 127 4 40 272 218 450 5.36e-60 198
MS.gene91142.t1 AT2G42810 44.255 235 127 4 40 272 271 503 2.40e-59 197
MS.gene91142.t1 AT2G42810 44.255 235 127 4 40 272 272 504 2.75e-59 197
MS.gene91142.t1 AT1G03445 40.074 272 145 8 20 276 480 748 4.34e-56 193
MS.gene91142.t1 AT1G03445 40.074 272 145 8 20 276 480 748 4.61e-56 193
MS.gene91142.t1 AT4G03080 38.545 275 152 7 20 279 554 826 1.16e-54 189
MS.gene91142.t1 AT2G27210 35.294 289 170 7 6 279 660 946 1.69e-50 178
MS.gene91142.t1 AT2G27210 35.294 289 170 7 6 279 665 951 1.97e-50 178
MS.gene91142.t1 AT1G08420 34.948 289 171 7 6 279 676 962 1.07e-49 176
MS.gene91142.t1 AT1G08420 34.948 289 171 7 6 279 671 957 1.20e-49 176
MS.gene91142.t1 AT5G63870 35.075 268 121 9 43 259 77 342 9.95e-32 122
MS.gene91142.t1 AT5G63870 35.075 268 121 9 43 259 77 342 9.95e-32 122
MS.gene91142.t1 AT1G48120 32.226 301 140 9 19 259 629 925 1.34e-30 121
MS.gene91142.t1 AT5G63870 37.500 216 96 7 43 221 77 290 6.87e-29 112
MS.gene91142.t1 AT5G10900 31.646 237 135 7 24 235 199 433 6.24e-24 101
MS.gene91142.t1 AT5G10900 31.646 237 135 7 24 235 199 433 6.55e-24 101
MS.gene91142.t1 AT5G10900 31.646 237 135 7 24 235 199 433 7.13e-24 101

Find 56 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTAGTTTCAATGAAAATA+TGG 0.227077 1.3:+22584350 MS.gene91142:CDS
CCACATCGGTAACAATAATT+AGG 0.234485 1.3:-22584312 None:intergenic
GTGTGAGTTGTCTACTTTCA+TGG 0.258082 1.3:-22581219 None:intergenic
TTTCATGGTTTCCACGTAGA+AGG 0.307041 1.3:-22581204 None:intergenic
GATGAATGCCAGAGAAAGTA+TGG 0.349004 1.3:+22581953 MS.gene91142:CDS
ATGTCACCACAAACAGTTAC+TGG 0.360532 1.3:-22580541 None:intergenic
ACCCAGGTGCTTTGTGTTCA+CGG 0.361024 1.3:+22582181 MS.gene91142:intron
TAGCATTTCCATACTTTCTC+TGG 0.362451 1.3:-22581961 None:intergenic
CGTAGAAGGGTTATATTAGC+TGG 0.378323 1.3:-22581190 None:intergenic
ACACTCTCTGCAATTATAGA+TGG 0.378687 1.3:+22582022 MS.gene91142:CDS
AAGTACATGTTCCAAGATAA+AGG 0.383237 1.3:+22583744 MS.gene91142:CDS
CAGTTACAAGGCCTTTATCT+TGG 0.389398 1.3:-22583755 None:intergenic
TGGTCAATTGTTCTGATGTC+TGG 0.394556 1.3:-22582214 None:intergenic
GCCCATGTTTCAATATCTTC+AGG 0.398413 1.3:-22583529 None:intergenic
CTCCACATAAGATCACAAAA+TGG 0.447030 1.3:-22583502 None:intergenic
GGTTAAAGAGATCTTAATTG+AGG 0.467806 1.3:+22580492 MS.gene91142:intron
CTTTAACCTTCGAGATCCAT+TGG 0.482031 1.3:-22580122 None:intergenic
ACTGTTTGTGGTGACATTCA+TGG 0.492582 1.3:+22580547 MS.gene91142:CDS
GCAGTCAGTCCACGTGGAGC+TGG 0.503063 1.3:+22583550 MS.gene91142:CDS
TTCAGATGCTTACAGTTACA+AGG 0.508425 1.3:-22583767 None:intergenic
ACCTAGCTTTAAGAAGCAAA+AGG 0.522956 1.3:-22580786 None:intergenic
TTCATGGTTTCCACGTAGAA+GGG 0.527118 1.3:-22581203 None:intergenic
AGTCTCGGGCACGTGCCCAC+CGG 0.531838 1.3:-22580602 None:intergenic
TAGGGTGACTTTGTTGATCG+TGG 0.540571 1.3:+22580736 MS.gene91142:intron
AATAGTCCAGTAACTGTTTG+TGG 0.542664 1.3:+22580535 MS.gene91142:CDS
TGGATCCCGGGTTACATCTG+AGG 0.546373 1.3:+22583582 MS.gene91142:CDS
TTGTTCTGATGTCTGGAGAA+AGG 0.553674 1.3:-22582207 None:intergenic
ACAGTTACTGGACTATTCAC+AGG 0.560124 1.3:-22580529 None:intergenic
TCAGTCCACGTGGAGCTGGT+TGG 0.561248 1.3:+22583554 MS.gene91142:CDS
CCTAATTATTGTTACCGATG+TGG 0.568015 1.3:+22584312 MS.gene91142:CDS
AGTATGGAAATGCTAATGCT+TGG 0.570861 1.3:+22581969 MS.gene91142:CDS
GTTCGTCTTCGAGAAGATGT+TGG 0.585150 1.3:-22580149 None:intergenic
TGGATCTCGAAGGTTAAAGA+TGG 0.588605 1.3:+22580126 MS.gene91142:CDS
TCCTGAAGATATTGAAACAT+GGG 0.588789 1.3:+22583528 MS.gene91142:CDS
GTGCTCGACAAACAAGATCA+AGG 0.593508 1.3:-22583698 None:intergenic
GTAGAAGGGTTATATTAGCT+GGG 0.598366 1.3:-22581189 None:intergenic
GAGATATGGATTTGGACCAA+TGG 0.609365 1.3:+22580106 None:intergenic
GCACATCAACTTGTACAAGA+AGG 0.609781 1.3:+22583717 MS.gene91142:CDS
TCACAAAATGGCCCCTCGTG+AGG 0.613649 1.3:-22583490 None:intergenic
ATCCTGAAGATATTGAAACA+TGG 0.620272 1.3:+22583527 MS.gene91142:CDS
ACATTACCTCAGATGTAACC+CGG 0.622692 1.3:-22583588 None:intergenic
GAACTGTGAAATTCCTCACG+AGG 0.623314 1.3:+22583477 MS.gene91142:CDS
AGCTTTAAGAAGCAAAAGGA+TGG 0.627769 1.3:-22580782 None:intergenic
AACTGTGAAATTCCTCACGA+GGG 0.643578 1.3:+22583478 MS.gene91142:CDS
TTTGGACCAATGGATCTCGA+AGG 0.650316 1.3:+22580116 MS.gene91142:CDS
GACAGATAAGAGTCATTGAG+CGG 0.664068 1.3:+22583455 MS.gene91142:intron
CATTACCTCAGATGTAACCC+GGG 0.673485 1.3:-22583587 None:intergenic
AGACATCAGAACAATTGACC+AGG 0.675885 1.3:+22582216 MS.gene91142:CDS
ACATGGGCAGTCAGTCCACG+TGG 0.685712 1.3:+22583544 MS.gene91142:CDS
TAGAAGCTACATTTCCACAT+CGG 0.686268 1.3:-22584326 None:intergenic
TGTAAGATAGTCGAAAACAT+CGG 0.689517 1.3:-22582002 None:intergenic
ACTGTGAAATTCCTCACGAG+GGG 0.691236 1.3:+22583479 MS.gene91142:CDS
TGAAAGTAGACAACTCACAC+AGG 0.696061 1.3:+22581222 MS.gene91142:CDS
GCTAATATAACCCTTCTACG+TGG 0.708247 1.3:+22581193 MS.gene91142:CDS
AAAAGCCAACCAGCTCCACG+TGG 0.711838 1.3:-22583559 None:intergenic
CAGGTGCTTTGTGTTCACGG+TGG 0.738287 1.3:+22582184 MS.gene91142:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAGATACTTAAATAAA+AGG - chr1.3:22581146-22581165 None:intergenic 10.0%
!!! ATATGTATCTTTTTAATAAA+AGG + chr1.3:22581783-22581802 MS.gene91142:intron 10.0%
!!! GTTTTATTGATTTTTTAATA+TGG - chr1.3:22585066-22585085 None:intergenic 10.0%
!!! TTGATTTGTTAAAATAAATT+AGG + chr1.3:22581525-22581544 MS.gene91142:intron 10.0%
!!! TTTTTTTTTAATAAATTTGC+AGG + chr1.3:22584278-22584297 MS.gene91142:intron 10.0%
!! ATAAAGTGAAAAATAAAAAC+AGG - chr1.3:22583018-22583037 None:intergenic 15.0%
!! ATTAATTTATTTATCCAAAC+AGG - chr1.3:22582312-22582331 None:intergenic 15.0%
!! TAAAGTGAAAAATAAAAACA+GGG - chr1.3:22583017-22583036 None:intergenic 15.0%
!! TAATTCTATAGCTTAAATAT+TGG + chr1.3:22583368-22583387 MS.gene91142:intron 15.0%
!! TTAAAAAAGTAAGTTTACAT+TGG + chr1.3:22581739-22581758 MS.gene91142:intron 15.0%
!!! AGTTTTATTTGAAAATATTG+AGG + chr1.3:22584245-22584264 MS.gene91142:intron 15.0%
!!! GCATTTTTTTTTTTAAATCT+TGG + chr1.3:22584621-22584640 MS.gene91142:intron 15.0%
!!! TATTTTATGTTATGTATTGT+TGG + chr1.3:22580654-22580673 MS.gene91142:intron 15.0%
!!! TCAATATTTTCAAATAAAAC+TGG - chr1.3:22584246-22584265 None:intergenic 15.0%
!!! TTTATTTTATCTTAGAGTTT+TGG - chr1.3:22582395-22582414 None:intergenic 15.0%
!!! TTTTTTTTTTAAATCTTGGA+TGG + chr1.3:22584625-22584644 MS.gene91142:intron 15.0%
!! AAGTTAATAATTAACCAAAC+AGG - chr1.3:22583203-22583222 None:intergenic 20.0%
!! ACTTAAAAGTAAAAAAGCTT+CGG - chr1.3:22584384-22584403 None:intergenic 20.0%
!! GTAAGAAATGTCTAAATTTA+TGG + chr1.3:22581631-22581650 MS.gene91142:intron 20.0%
!! TAACTGCAATATAAACTAAT+AGG + chr1.3:22581500-22581519 MS.gene91142:intron 20.0%
!! TACACAAAATTAACATCAAT+TGG - chr1.3:22581902-22581921 None:intergenic 20.0%
!! TAGTTTATGATAGAACATTA+TGG + chr1.3:22581003-22581022 MS.gene91142:intron 20.0%
!! TCTTAGTTTCAATGAAAATA+TGG + chr1.3:22584350-22584369 MS.gene91142:CDS 20.0%
!! TCTTGATTTATTTAACATGA+AGG - chr1.3:22584550-22584569 None:intergenic 20.0%
!! TGAAAATATTGAGGTAAAAA+AGG + chr1.3:22584254-22584273 MS.gene91142:intron 20.0%
!! TTATTATGAATGAATGTTTC+AGG + chr1.3:22580471-22580490 MS.gene91142:intron 20.0%
!!! AAAATATTAGTCTACTAATG+AGG + chr1.3:22585179-22585198 MS.gene91142:intron 20.0%
!!! AGAGAATTTTCTTATGAAAT+TGG + chr1.3:22584869-22584888 MS.gene91142:intron 20.0%
!!! ATAAAAATGTAATTAGTCTC+GGG - chr1.3:22580619-22580638 None:intergenic 20.0%
!!! ATATGACATGATTGTATTTT+TGG + chr1.3:22582821-22582840 MS.gene91142:intron 20.0%
!!! ATTCATTTTTTTTGATCAAC+TGG + chr1.3:22583819-22583838 MS.gene91142:intron 20.0%
!!! CATAAAAATGTAATTAGTCT+CGG - chr1.3:22580620-22580639 None:intergenic 20.0%
!!! TGGATTCTTACTTTTTAAAA+AGG + chr1.3:22583388-22583407 MS.gene91142:intron 20.0%
!!! TGTGTAATTTAATATTTTGC+AGG + chr1.3:22581916-22581935 MS.gene91142:intron 20.0%
!!! TGTTTTAGAAATTAATGAGT+TGG + chr1.3:22580971-22580990 MS.gene91142:intron 20.0%
!!! TTTGATTTGACAAAAAAGAA+TGG - chr1.3:22583117-22583136 None:intergenic 20.0%
!!! TTTTAATAAATTTGCAGGTA+TGG + chr1.3:22584283-22584302 MS.gene91142:intron 20.0%
!!! TTTTTAAACTTCTTAACATG+TGG - chr1.3:22581726-22581745 None:intergenic 20.0%
! AAAAATCAATAAAACTGCCA+AGG + chr1.3:22585071-22585090 MS.gene91142:intron 25.0%
! AAACATTTGCAAGATTGTTT+AGG - chr1.3:22582519-22582538 None:intergenic 25.0%
! AAACTGATATCTTATTGTAG+TGG - chr1.3:22583321-22583340 None:intergenic 25.0%
! AAGAAAATTTGTAACTTCCT+TGG - chr1.3:22585091-22585110 None:intergenic 25.0%
! AGAACATGGGAAATTATTAA+AGG + chr1.3:22581314-22581333 MS.gene91142:intron 25.0%
! ATCAGTTTATATGCTATTGT+TGG + chr1.3:22583333-22583352 MS.gene91142:intron 25.0%
! ATGAAAATAACAGGAGAATA+TGG + chr1.3:22584916-22584935 MS.gene91142:intron 25.0%
! ATGAGATATGCAAAAAACAA+AGG - chr1.3:22584462-22584481 None:intergenic 25.0%
! ATTAACATGTTGTGGTAAAA+GGG - chr1.3:22582786-22582805 None:intergenic 25.0%
! CAATAGTATTTCTTCTTGTA+TGG + chr1.3:22584524-22584543 MS.gene91142:intron 25.0%
! CATACAAGAAGAAATACTAT+TGG - chr1.3:22584526-22584545 None:intergenic 25.0%
! CATGTTAAAAGAACTAAAAG+TGG - chr1.3:22581812-22581831 None:intergenic 25.0%
! CTAGAATAAAGTAAGGAAAA+AGG - chr1.3:22582908-22582927 None:intergenic 25.0%
! CTGAAATAGTCCAATTAATA+GGG + chr1.3:22583893-22583912 MS.gene91142:intron 25.0%
! CTGCTTAAAATGTTAACTTA+AGG - chr1.3:22581296-22581315 None:intergenic 25.0%
! TATGAAATTGGATGTTGAAA+GGG + chr1.3:22584881-22584900 MS.gene91142:intron 25.0%
! TATTAACATGTTGTGGTAAA+AGG - chr1.3:22582787-22582806 None:intergenic 25.0%
! TATTATACTATGATCCTGTT+TGG + chr1.3:22582295-22582314 MS.gene91142:intron 25.0%
! TCAAATAAGCTAATCCAAAT+AGG + chr1.3:22582555-22582574 MS.gene91142:intron 25.0%
! TCCTAAAATTATTATCTGTG+TGG - chr1.3:22580950-22580969 None:intergenic 25.0%
! TGAAATAGTCCAATTAATAG+GGG + chr1.3:22583894-22583913 MS.gene91142:intron 25.0%
! TGATTTCCTAGAATAAAGTA+AGG - chr1.3:22582915-22582934 None:intergenic 25.0%
! TTAAATAAATCAAGAGACAC+AGG + chr1.3:22584555-22584574 MS.gene91142:intron 25.0%
! TTATGAAATTGGATGTTGAA+AGG + chr1.3:22584880-22584899 MS.gene91142:intron 25.0%
! TTCTAATGGCATTTCAAAAA+GGG - chr1.3:22581859-22581878 None:intergenic 25.0%
! TTCTCATCTCTAATTTCTAA+TGG - chr1.3:22581873-22581892 None:intergenic 25.0%
! TTGGAAGCTATAAAGAAAAA+CGG - chr1.3:22584507-22584526 None:intergenic 25.0%
! TTTCTAATGGCATTTCAAAA+AGG - chr1.3:22581860-22581879 None:intergenic 25.0%
!! ACCACACAGATAATAATTTT+AGG + chr1.3:22580946-22580965 MS.gene91142:intron 25.0%
!! ATAATTGATTCAGTGATGTA+AGG + chr1.3:22581562-22581581 MS.gene91142:intron 25.0%
!! CGAGACTAATTACATTTTTA+TGG + chr1.3:22580618-22580637 MS.gene91142:CDS 25.0%
!! CTTTTTCCTTACTTTATTCT+AGG + chr1.3:22582906-22582925 MS.gene91142:intron 25.0%
!! GTAGATGCTATTGAAATTTT+AGG + chr1.3:22585111-22585130 MS.gene91142:intron 25.0%
!! TAACATTTTAAGCAGAACAT+GGG + chr1.3:22581301-22581320 MS.gene91142:intron 25.0%
!! TATTGACTAATCCATTTAGA+TGG + chr1.3:22584158-22584177 MS.gene91142:intron 25.0%
!! TCTGAAATAGTCCAATTAAT+AGG + chr1.3:22583892-22583911 MS.gene91142:intron 25.0%
!! TTAACATTTTAAGCAGAACA+TGG + chr1.3:22581300-22581319 MS.gene91142:intron 25.0%
!! TTTAATATTTTGCAGGTCTA+TGG + chr1.3:22581923-22581942 MS.gene91142:intron 25.0%
!!! AATTTTAGGAATCAGATGTA+AGG + chr1.3:22585125-22585144 MS.gene91142:intron 25.0%
!!! CTAATGATGTTTTGTTTTTG+GGG + chr1.3:22581426-22581445 MS.gene91142:intron 25.0%
!!! CTTTTTTGTCAAATCAAAAC+AGG + chr1.3:22583119-22583138 MS.gene91142:intron 25.0%
!!! GCTAATGATGTTTTGTTTTT+GGG + chr1.3:22581425-22581444 MS.gene91142:intron 25.0%
!!! TAATGATGTTTTGTTTTTGG+GGG + chr1.3:22581427-22581446 MS.gene91142:intron 25.0%
!!! TTGTTTTTTGCATATCTCAT+GGG + chr1.3:22584462-22584481 MS.gene91142:intron 25.0%
!!! TTTGTTTTTTGCATATCTCA+TGG + chr1.3:22584461-22584480 MS.gene91142:intron 25.0%
AAAGTCACAAAACTACAAAG+TGG - chr1.3:22580872-22580891 None:intergenic 30.0%
AAATAGTCCAATTAATAGGG+GGG + chr1.3:22583896-22583915 MS.gene91142:intron 30.0%
AAATGAGATGTAGATGTAGA+TGG + chr1.3:22585148-22585167 MS.gene91142:intron 30.0%
AAGTACATGTTCCAAGATAA+AGG + chr1.3:22583744-22583763 MS.gene91142:CDS 30.0%
AAGTTATTCCAAATGCACTT+AGG - chr1.3:22582582-22582601 None:intergenic 30.0%
ACAATAAGTGCTTGTGTTAT+AGG - chr1.3:22582341-22582360 None:intergenic 30.0%
ACCAATATATATCATGTACC+CGG + chr1.3:22584782-22584801 MS.gene91142:intron 30.0%
AGATCTGTATAGGAATAATC+AGG + chr1.3:22583050-22583069 MS.gene91142:intron 30.0%
AGGTATGTGTTTAATGTACT+TGG + chr1.3:22581242-22581261 MS.gene91142:intron 30.0%
AGTTATTCCAAATGCACTTA+GGG - chr1.3:22582581-22582600 None:intergenic 30.0%
ATATATCATGATATGTCCTG+AGG + chr1.3:22584993-22585012 MS.gene91142:intron 30.0%
ATCCTGAAGATATTGAAACA+TGG + chr1.3:22583527-22583546 MS.gene91142:CDS 30.0%
ATCTTCGTAGTTCAAAATGA+CGG + chr1.3:22584835-22584854 MS.gene91142:intron 30.0%
ATCTTTATGGGATAAGATTG+AGG - chr1.3:22584074-22584093 None:intergenic 30.0%
ATGTTATGTATTGTTGGATC+TGG + chr1.3:22580660-22580679 MS.gene91142:intron 30.0%
ATTCACCCTTAGATCTTTAT+GGG - chr1.3:22584086-22584105 None:intergenic 30.0%
CAATACACAATTGACAATGT+TGG - chr1.3:22581366-22581385 None:intergenic 30.0%
CCTATACAGATCTTAATATC+AGG - chr1.3:22583043-22583062 None:intergenic 30.0%
CCTGATATTAAGATCTGTAT+AGG + chr1.3:22583040-22583059 MS.gene91142:intron 30.0%
CTATAGTTGTTGGAATTAAG+AGG + chr1.3:22584599-22584618 MS.gene91142:intron 30.0%
CTCTTAATTCCAACAACTAT+AGG - chr1.3:22584601-22584620 None:intergenic 30.0%
CTTATCCCATAAAGATCTAA+GGG + chr1.3:22584078-22584097 MS.gene91142:intron 30.0%
GAAATAGTCCAATTAATAGG+GGG + chr1.3:22583895-22583914 MS.gene91142:intron 30.0%
GATCTGTATAGGAATAATCA+GGG + chr1.3:22583051-22583070 MS.gene91142:intron 30.0%
GCAAAACAATGACTTATTTG+AGG + chr1.3:22584657-22584676 MS.gene91142:intron 30.0%
GGTTAAAGAGATCTTAATTG+AGG + chr1.3:22580492-22580511 MS.gene91142:intron 30.0%
TAGCTATCTTGGAGAATTTA+TGG + chr1.3:22582453-22582472 MS.gene91142:intron 30.0%
TATCGAAGTCAAAATTCAAG+AGG - chr1.3:22582849-22582868 None:intergenic 30.0%
TATTCACCCTTAGATCTTTA+TGG - chr1.3:22584087-22584106 None:intergenic 30.0%
TCAGATTGTCAGTTACATAT+GGG + chr1.3:22584728-22584747 MS.gene91142:intron 30.0%
TCATTAGGGATGAAAATAAC+AGG + chr1.3:22584907-22584926 MS.gene91142:intron 30.0%
TCCTGAAGATATTGAAACAT+GGG + chr1.3:22583528-22583547 MS.gene91142:CDS 30.0%
TCTAATTTATTCGTCGTGTT+TGG + chr1.3:22580891-22580910 MS.gene91142:intron 30.0%
TCTTATCCCATAAAGATCTA+AGG + chr1.3:22584077-22584096 MS.gene91142:intron 30.0%
TCTTTATGGGATAAGATTGA+GGG - chr1.3:22584073-22584092 None:intergenic 30.0%
TGACTTATTTGAGGAATAGT+TGG + chr1.3:22584666-22584685 MS.gene91142:intron 30.0%
TGTAAGATAGTCGAAAACAT+CGG - chr1.3:22582005-22582024 None:intergenic 30.0%
TGTGACTTTGAGTAATATTG+CGG + chr1.3:22580846-22580865 MS.gene91142:intron 30.0%
TTGTGTATTGCAAAAAGTAG+CGG + chr1.3:22581376-22581395 MS.gene91142:intron 30.0%
! AACATGTTTTCAAACCAAAC+AGG - chr1.3:22582956-22582975 None:intergenic 30.0%
! ACGCATTGAAGAGAAATTTT+AGG + chr1.3:22580325-22580344 MS.gene91142:intron 30.0%
! ATTGAATTGAGCTTTATGTG+TGG + chr1.3:22583630-22583649 MS.gene91142:intron 30.0%
! TTGAATTGAGCTTTATGTGT+GGG + chr1.3:22583631-22583650 MS.gene91142:intron 30.0%
! TTTATTCTAGGAAATCAGAG+AGG + chr1.3:22582918-22582937 MS.gene91142:intron 30.0%
!! GTGTTACTGAATGTGTTTTA+GGG + chr1.3:22580718-22580737 MS.gene91142:intron 30.0%
!! TGTGTTACTGAATGTGTTTT+AGG + chr1.3:22580717-22580736 MS.gene91142:intron 30.0%
!!! AATGATGTTTTGTTTTTGGG+GGG + chr1.3:22581428-22581447 MS.gene91142:intron 30.0%
!!! CTAATGAAACTTTTTCAGAC+CGG + chr1.3:22580583-22580602 MS.gene91142:CDS 30.0%
!!! GAGAAATTTTAGGTCTTGTT+TGG + chr1.3:22580335-22580354 MS.gene91142:intron 30.0%
!!! GGCTAATGATGTTTTGTTTT+TGG + chr1.3:22581424-22581443 MS.gene91142:intron 30.0%
AACATGTGCAATGTTGCATA+TGG + chr1.3:22581826-22581845 MS.gene91142:intron 35.0%
AATAAATCAAGAGACACAGG+AGG + chr1.3:22584558-22584577 MS.gene91142:intron 35.0%
AATAGTCCAATTAATAGGGG+GGG + chr1.3:22583897-22583916 MS.gene91142:intron 35.0%
AATAGTCCAGTAACTGTTTG+TGG + chr1.3:22580535-22580554 MS.gene91142:CDS 35.0%
AATATATATCATGTACCCGG+TGG + chr1.3:22584785-22584804 MS.gene91142:intron 35.0%
ACACTCTCTGCAATTATAGA+TGG + chr1.3:22582022-22582041 MS.gene91142:CDS 35.0%
ACAGACAAATCACTTGAGAA+GGG + chr1.3:22584127-22584146 MS.gene91142:intron 35.0%
ACATCTAGTCATTATTGGCA+TGG - chr1.3:22582692-22582711 None:intergenic 35.0%
ACCGGGTACATGATATATAT+TGG - chr1.3:22584786-22584805 None:intergenic 35.0%
ACTGTTCTCATTAGCTATCT+TGG + chr1.3:22582442-22582461 MS.gene91142:intron 35.0%
AGTATGGAAATGCTAATGCT+TGG + chr1.3:22581969-22581988 MS.gene91142:CDS 35.0%
CAGATTGTCAGTTACATATG+GGG + chr1.3:22584729-22584748 MS.gene91142:intron 35.0%
CCACATCGGTAACAATAATT+AGG - chr1.3:22584315-22584334 None:intergenic 35.0%
CCTAATTATTGTTACCGATG+TGG + chr1.3:22584312-22584331 MS.gene91142:CDS 35.0%
CGTAACTCTCTTATATGCTA+TGG + chr1.3:22582155-22582174 MS.gene91142:intron 35.0%
CTCCACATAAGATCACAAAA+TGG - chr1.3:22583505-22583524 None:intergenic 35.0%
CTCTTTACTCCTATAGTTGT+TGG + chr1.3:22584589-22584608 MS.gene91142:intron 35.0%
GCAAGACATCTAGTCATTAT+TGG - chr1.3:22582697-22582716 None:intergenic 35.0%
GGTTTACATACACAATGTCA+AGG - chr1.3:22582757-22582776 None:intergenic 35.0%
GTACAGCAAAATGAAACTGA+AGG - chr1.3:22583181-22583200 None:intergenic 35.0%
GTAGAAGGGTTATATTAGCT+GGG - chr1.3:22581192-22581211 None:intergenic 35.0%
GTCAGATTGTCAGTTACATA+TGG + chr1.3:22584727-22584746 MS.gene91142:intron 35.0%
GTCTTGATTGTTGCATCATT+TGG + chr1.3:22584418-22584437 MS.gene91142:intron 35.0%
TACAGACAAATCACTTGAGA+AGG + chr1.3:22584126-22584145 MS.gene91142:intron 35.0%
TACATGTGTTCCAACTGTAA+TGG - chr1.3:22584697-22584716 None:intergenic 35.0%
TAGAAGCTACATTTCCACAT+CGG - chr1.3:22584329-22584348 None:intergenic 35.0%
TAGCATTTCCATACTTTCTC+TGG - chr1.3:22581964-22581983 None:intergenic 35.0%
TCGCTTACTTGAAACACTTT+GGG - chr1.3:22583933-22583952 None:intergenic 35.0%
TCTGTAAATTGAGCTAGTGT+GGG - chr1.3:22584112-22584131 None:intergenic 35.0%
TTATTGGCATGGCACAAATT+TGG - chr1.3:22582681-22582700 None:intergenic 35.0%
TTCAGATGCTTACAGTTACA+AGG - chr1.3:22583770-22583789 None:intergenic 35.0%
! CTATAGTCTTTTAACAAGCC+CGG - chr1.3:22583863-22583882 None:intergenic 35.0%
! CTCTCGCTCTTTTCTTTTTA+GGG + chr1.3:22580218-22580237 MS.gene91142:intron 35.0%
! GCTTCTCTTTCTGAGTATTT+TGG + chr1.3:22584026-22584045 MS.gene91142:intron 35.0%
! TCCTTTTGCTTCTTAAAGCT+AGG + chr1.3:22580785-22580804 MS.gene91142:CDS 35.0%
! TCTCTCGCTCTTTTCTTTTT+AGG + chr1.3:22580217-22580236 MS.gene91142:intron 35.0%
!! ACCTAGCTTTAAGAAGCAAA+AGG - chr1.3:22580789-22580808 None:intergenic 35.0%
!! AGCTTTAAGAAGCAAAAGGA+TGG - chr1.3:22580785-22580804 None:intergenic 35.0%
!! GGCTTGTTAAAAGACTATAG+AGG + chr1.3:22583863-22583882 MS.gene91142:intron 35.0%
!! TTCATTTTGCTGTACCTGTT+TGG + chr1.3:22583186-22583205 MS.gene91142:intron 35.0%
!!! TTTGATCAACTGGTCTTTTG+AGG + chr1.3:22583829-22583848 MS.gene91142:intron 35.0%
AAATAGGCCCTAAGTGCATT+TGG + chr1.3:22582571-22582590 MS.gene91142:intron 40.0%
AAATGCACTTAGGGCCTATT+TGG - chr1.3:22582572-22582591 None:intergenic 40.0%
AACATGTTGTGGTAAAAGGG+TGG - chr1.3:22582783-22582802 None:intergenic 40.0%
AACTGTGAAATTCCTCACGA+GGG + chr1.3:22583478-22583497 MS.gene91142:CDS 40.0%
AAGAAAGTTATCCCACATGG+TGG - chr1.3:22584186-22584205 None:intergenic 40.0%
ACAGTTACTGGACTATTCAC+AGG - chr1.3:22580532-22580551 None:intergenic 40.0%
ACATTACCTCAGATGTAACC+CGG - chr1.3:22583591-22583610 None:intergenic 40.0%
ACCAAGAAAGTTATCCCACA+TGG - chr1.3:22584189-22584208 None:intergenic 40.0%
ACCATGTGGGATAACTTTCT+TGG + chr1.3:22584185-22584204 MS.gene91142:intron 40.0%
ACTGTTTGTGGTGACATTCA+TGG + chr1.3:22580547-22580566 MS.gene91142:CDS 40.0%
AGAAAGTTATCCCACATGGT+GGG - chr1.3:22584185-22584204 None:intergenic 40.0%
AGACATCAGAACAATTGACC+AGG + chr1.3:22582216-22582235 MS.gene91142:CDS 40.0%
ATGTCACCACAAACAGTTAC+TGG - chr1.3:22580544-22580563 None:intergenic 40.0%
ATGTTGAAAGGGAGGTCATT+AGG + chr1.3:22584892-22584911 MS.gene91142:intron 40.0%
CACTGCTTAAATGTGAGTAG+GGG - chr1.3:22582095-22582114 None:intergenic 40.0%
CAGTTACAAGGCCTTTATCT+TGG - chr1.3:22583758-22583777 None:intergenic 40.0%
CGCTTACTTGAAACACTTTG+GGG - chr1.3:22583932-22583951 None:intergenic 40.0%
CGTAGAAGGGTTATATTAGC+TGG - chr1.3:22581193-22581212 None:intergenic 40.0%
CTCGCTTACTTGAAACACTT+TGG - chr1.3:22583934-22583953 None:intergenic 40.0%
CTTTAACCTTCGAGATCCAT+TGG - chr1.3:22580125-22580144 None:intergenic 40.0%
GAAATTGGATGTTGAAAGGG+AGG + chr1.3:22584884-22584903 MS.gene91142:intron 40.0%
GACAGATAAGAGTCATTGAG+CGG + chr1.3:22583455-22583474 MS.gene91142:intron 40.0%
GATGAATGCCAGAGAAAGTA+TGG + chr1.3:22581953-22581972 MS.gene91142:CDS 40.0%
GCACATCAACTTGTACAAGA+AGG + chr1.3:22583717-22583736 MS.gene91142:CDS 40.0%
GCACTGCTTAAATGTGAGTA+GGG - chr1.3:22582096-22582115 None:intergenic 40.0%
GCCCATGTTTCAATATCTTC+AGG - chr1.3:22583532-22583551 None:intergenic 40.0%
GCTAATATAACCCTTCTACG+TGG + chr1.3:22581193-22581212 MS.gene91142:CDS 40.0%
GCTTACTTGAAACACTTTGG+GGG - chr1.3:22583931-22583950 None:intergenic 40.0%
GTAGATTTCAACCAGCAACT+GGG - chr1.3:22582257-22582276 None:intergenic 40.0%
GTCTGTAAATTGAGCTAGTG+TGG - chr1.3:22584113-22584132 None:intergenic 40.0%
GTGAAGTGACAATGCTACAT+AGG + chr1.3:22581072-22581091 MS.gene91142:intron 40.0%
GTGTGAGTTGTCTACTTTCA+TGG - chr1.3:22581222-22581241 None:intergenic 40.0%
TCAGCGCTATTAACATGTTG+TGG - chr1.3:22582794-22582813 None:intergenic 40.0%
TGAAAGTAGACAACTCACAC+AGG + chr1.3:22581222-22581241 MS.gene91142:CDS 40.0%
TGCACTGCTTAAATGTGAGT+AGG - chr1.3:22582097-22582116 None:intergenic 40.0%
TGGATCTCGAAGGTTAAAGA+TGG + chr1.3:22580126-22580145 MS.gene91142:CDS 40.0%
TGGTCAATTGTTCTGATGTC+TGG - chr1.3:22582217-22582236 None:intergenic 40.0%
TGTAGATTTCAACCAGCAAC+TGG - chr1.3:22582258-22582277 None:intergenic 40.0%
TGTTGAAAGGGAGGTCATTA+GGG + chr1.3:22584893-22584912 MS.gene91142:intron 40.0%
TTCATGGTTTCCACGTAGAA+GGG - chr1.3:22581206-22581225 None:intergenic 40.0%
TTGTTCTGATGTCTGGAGAA+AGG - chr1.3:22582210-22582229 None:intergenic 40.0%
TTTCATGGTTTCCACGTAGA+AGG - chr1.3:22581207-22581226 None:intergenic 40.0%
! GCATTGTCACTTCACAATGA+AGG - chr1.3:22581067-22581086 None:intergenic 40.0%
! TAGCGGTTTGTTCAAATTCC+CGG + chr1.3:22581393-22581412 MS.gene91142:intron 40.0%
! TCTATAGGCCTTTTGTGATC+AGG + chr1.3:22581455-22581474 MS.gene91142:intron 40.0%
! TGTTCACAGTTTAAAGCCTC+AGG - chr1.3:22585012-22585031 None:intergenic 40.0%
! TTTTACTACTGCTCTTGCTG+TGG + chr1.3:22581609-22581628 MS.gene91142:intron 40.0%
!! AATCAGAGAGGTATCAGCAA+TGG + chr1.3:22582930-22582949 MS.gene91142:intron 40.0%
!! GGCCATTTTGTGATCTTATG+TGG + chr1.3:22583500-22583519 MS.gene91142:CDS 40.0%
!!! ATGAAACTTTTTCAGACCGG+TGG + chr1.3:22580586-22580605 MS.gene91142:CDS 40.0%
!!! TGAAACTTTTTCAGACCGGT+GGG + chr1.3:22580587-22580606 MS.gene91142:CDS 40.0%
ACTCGGTTATTGTTAGGTGG+GGG + chr1.3:22583972-22583991 MS.gene91142:intron 45.0%
ACTGTGAAATTCCTCACGAG+GGG + chr1.3:22583479-22583498 MS.gene91142:CDS 45.0%
ATAGAGAGAGGAAAGAGGGA+AGG - chr1.3:22582072-22582091 None:intergenic 45.0%
ATTTAGATGGTCCCACCATG+TGG + chr1.3:22584171-22584190 MS.gene91142:intron 45.0%
ATTTCAACCAGCAACTGGGA+AGG - chr1.3:22582253-22582272 None:intergenic 45.0%
CATTACCTCAGATGTAACCC+GGG - chr1.3:22583590-22583609 None:intergenic 45.0%
CCAATTAATAGGGGGGGTAA+AGG + chr1.3:22583903-22583922 MS.gene91142:intron 45.0%
CCACAGAACCTGATCACAAA+AGG - chr1.3:22581466-22581485 None:intergenic 45.0%
CCTTTACCCCCCCTATTAAT+TGG - chr1.3:22583906-22583925 None:intergenic 45.0%
GAACTGTGAAATTCCTCACG+AGG + chr1.3:22583477-22583496 MS.gene91142:CDS 45.0%
GTGCTCGACAAACAAGATCA+AGG - chr1.3:22583701-22583720 None:intergenic 45.0%
GTTCGTCTTCGAGAAGATGT+TGG - chr1.3:22580152-22580171 None:intergenic 45.0%
TAGGGTGACTTTGTTGATCG+TGG + chr1.3:22580736-22580755 MS.gene91142:intron 45.0%
TGTGATCAGGTTCTGTGGAA+GGG + chr1.3:22581468-22581487 MS.gene91142:intron 45.0%
TGTTGCATCATTTGGCCTCA+TGG + chr1.3:22584426-22584445 MS.gene91142:intron 45.0%
TTATATGCTATGGTCGACCC+AGG + chr1.3:22582165-22582184 MS.gene91142:intron 45.0%
TTCAAATTCCCGGTCATAGC+AGG + chr1.3:22581403-22581422 MS.gene91142:intron 45.0%
TTGTGATCAGGTTCTGTGGA+AGG + chr1.3:22581467-22581486 MS.gene91142:intron 45.0%
TTTAGATGGTCCCACCATGT+GGG + chr1.3:22584172-22584191 MS.gene91142:intron 45.0%
TTTCAACCAGCAACTGGGAA+GGG - chr1.3:22582252-22582271 None:intergenic 45.0%
TTTGGACCAATGGATCTCGA+AGG + chr1.3:22580116-22580135 MS.gene91142:CDS 45.0%
! AAAGGCACACATACACCATG+AGG - chr1.3:22584444-22584463 None:intergenic 45.0%
! AAGCATTGTGGGGCAAAATC+AGG + chr1.3:22583995-22584014 MS.gene91142:intron 45.0%
! ACATGGTGGGACCATCTAAA+TGG - chr1.3:22584172-22584191 None:intergenic 45.0%
! ATCATTAGCCTGCTATGACC+GGG - chr1.3:22581414-22581433 None:intergenic 45.0%
! CATCATTAGCCTGCTATGAC+CGG - chr1.3:22581415-22581434 None:intergenic 45.0%
! CCTTTTGTGATCAGGTTCTG+TGG + chr1.3:22581463-22581482 MS.gene91142:intron 45.0%
! GACTCGGTTATTGTTAGGTG+GGG + chr1.3:22583971-22583990 MS.gene91142:intron 45.0%
! GGACTCGGTTATTGTTAGGT+GGG + chr1.3:22583970-22583989 MS.gene91142:intron 45.0%
!! CTTCTAAACGCTGATTCCAC+CGG - chr1.3:22584804-22584823 None:intergenic 45.0%
!! TTCTAAACGCTGATTCCACC+GGG - chr1.3:22584803-22584822 None:intergenic 45.0%
!! TTTTTGGGGGGCACATCTAT+AGG + chr1.3:22581440-22581459 MS.gene91142:intron 45.0%
!!! ATGGCGTATTTTGATCCACG+TGG + chr1.3:22581022-22581041 MS.gene91142:intron 45.0%
!!! GATCAACTGGTCTTTTGAGG+TGG + chr1.3:22583832-22583851 MS.gene91142:intron 45.0%
!!! GTATTTTGGAGTAGCTGTCG+TGG + chr1.3:22584040-22584059 MS.gene91142:intron 45.0%
!!! AACTTTTTTTTTTTTTTTTT+TGG + chr1.3:22583231-22583250 MS.gene91142:intron 5.0%
AACGAGCATCAGCAGCTTCA+GGG - chr1.3:22584953-22584972 None:intergenic 50.0%
AAGCGAGCTTGAGCTGTTTG+AGG + chr1.3:22583947-22583966 MS.gene91142:intron 50.0%
ACCCAGGTGCTTTGTGTTCA+CGG + chr1.3:22582181-22582200 MS.gene91142:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr1.3:22580198-22580217 None:intergenic 50.0%
AGCGAGCTTGAGCTGTTTGA+GGG + chr1.3:22583948-22583967 MS.gene91142:intron 50.0%
AGGGGATAGAGAGAGGAAAG+AGG - chr1.3:22582077-22582096 None:intergenic 50.0%
GGGGATAGAGAGAGGAAAGA+GGG - chr1.3:22582076-22582095 None:intergenic 50.0%
GGTATCAGCAATGGCCTGTT+TGG + chr1.3:22582939-22582958 MS.gene91142:intron 50.0%
GTTGGCGTGTCCATTACAGT+TGG + chr1.3:22584684-22584703 MS.gene91142:intron 50.0%
GTTGTGGTAAAAGGGTGGAC+AGG - chr1.3:22582778-22582797 None:intergenic 50.0%
TAACGAGCATCAGCAGCTTC+AGG - chr1.3:22584954-22584973 None:intergenic 50.0%
TGTGAGTAGGGGATAGAGAG+AGG - chr1.3:22582084-22582103 None:intergenic 50.0%
TTGAGCTGTTTGAGGGGACT+CGG + chr1.3:22583955-22583974 MS.gene91142:intron 50.0%
! ACCGTGAACACAAAGCACCT+GGG - chr1.3:22582185-22582204 None:intergenic 50.0%
! GAGGGGACTCGGTTATTGTT+AGG + chr1.3:22583966-22583985 MS.gene91142:intron 50.0%
! GGGACTCGGTTATTGTTAGG+TGG + chr1.3:22583969-22583988 MS.gene91142:intron 50.0%
!! TTAGGTGGGGGAAGCATTGT+GGG + chr1.3:22583984-22584003 MS.gene91142:intron 50.0%
!!! CTGGTTGGCTTTTTGGATCC+CGG + chr1.3:22583569-22583588 MS.gene91142:CDS 50.0%
!!! GTCTTTTGAGGTGGTTCGTC+CGG + chr1.3:22583841-22583860 MS.gene91142:intron 50.0%
!!! TCTTTTGAGGTGGTTCGTCC+GGG + chr1.3:22583842-22583861 MS.gene91142:intron 50.0%
!!! TGGTTGGCTTTTTGGATCCC+GGG + chr1.3:22583570-22583589 MS.gene91142:CDS 50.0%
AAAAGCCAACCAGCTCCACG+TGG - chr1.3:22583562-22583581 None:intergenic 55.0%
ACGAGCATCAGCAGCTTCAG+GGG - chr1.3:22584952-22584971 None:intergenic 55.0%
CAGGTGCTTTGTGTTCACGG+TGG + chr1.3:22582184-22582203 MS.gene91142:intron 55.0%
GCGAGCTTGAGCTGTTTGAG+GGG + chr1.3:22583949-22583968 MS.gene91142:intron 55.0%
TCACAAAATGGCCCCTCGTG+AGG - chr1.3:22583493-22583512 None:intergenic 55.0%
TGATCCACGTGGTCAGACAC+TGG + chr1.3:22581033-22581052 MS.gene91142:intron 55.0%
TGGATCCCGGGTTACATCTG+AGG + chr1.3:22583582-22583601 MS.gene91142:CDS 55.0%
! CACCGTGAACACAAAGCACC+TGG - chr1.3:22582186-22582205 None:intergenic 55.0%
!! GTTAGGTGGGGGAAGCATTG+TGG + chr1.3:22583983-22584002 MS.gene91142:intron 55.0%
!! TAGGTGGGGGAAGCATTGTG+GGG + chr1.3:22583985-22584004 MS.gene91142:intron 55.0%
!!! CGTGGAGCTGGTTGGCTTTT+TGG + chr1.3:22583562-22583581 MS.gene91142:CDS 55.0%
ACATGGGCAGTCAGTCCACG+TGG + chr1.3:22583544-22583563 MS.gene91142:CDS 60.0%
CGAGCATCAGCAGCTTCAGG+GGG - chr1.3:22584951-22584970 None:intergenic 60.0%
CTAGCTCCCTTCCCAGTTGC+TGG + chr1.3:22582243-22582262 MS.gene91142:intron 60.0%
GGGAAGGGAGCTAGAGAACC+TGG - chr1.3:22582237-22582256 None:intergenic 60.0%
GTGTCCAGTGTCTGACCACG+TGG - chr1.3:22581040-22581059 None:intergenic 60.0%
TCAGTCCACGTGGAGCTGGT+TGG + chr1.3:22583554-22583573 MS.gene91142:CDS 60.0%
GCAGTCAGTCCACGTGGAGC+TGG + chr1.3:22583550-22583569 MS.gene91142:CDS 65.0%
AGTCTCGGGCACGTGCCCAC+CGG - chr1.3:22580605-22580624 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 22580111 22585304 22580111 ID=MS.gene91142
chr1.3 mRNA 22580111 22585304 22580111 ID=MS.gene91142.t1;Parent=MS.gene91142
chr1.3 exon 22580111 22580191 22580111 ID=MS.gene91142.t1.exon1;Parent=MS.gene91142.t1
chr1.3 CDS 22580111 22580191 22580111 ID=cds.MS.gene91142.t1;Parent=MS.gene91142.t1
chr1.3 exon 22580493 22580639 22580493 ID=MS.gene91142.t1.exon2;Parent=MS.gene91142.t1
chr1.3 CDS 22580493 22580639 22580493 ID=cds.MS.gene91142.t1;Parent=MS.gene91142.t1
chr1.3 exon 22580739 22580806 22580739 ID=MS.gene91142.t1.exon3;Parent=MS.gene91142.t1
chr1.3 CDS 22580739 22580806 22580739 ID=cds.MS.gene91142.t1;Parent=MS.gene91142.t1
chr1.3 exon 22581186 22581243 22581186 ID=MS.gene91142.t1.exon4;Parent=MS.gene91142.t1
chr1.3 CDS 22581186 22581243 22581186 ID=cds.MS.gene91142.t1;Parent=MS.gene91142.t1
chr1.3 exon 22581938 22582048 22581938 ID=MS.gene91142.t1.exon5;Parent=MS.gene91142.t1
chr1.3 CDS 22581938 22582048 22581938 ID=cds.MS.gene91142.t1;Parent=MS.gene91142.t1
chr1.3 exon 22582187 22582237 22582187 ID=MS.gene91142.t1.exon6;Parent=MS.gene91142.t1
chr1.3 CDS 22582187 22582237 22582187 ID=cds.MS.gene91142.t1;Parent=MS.gene91142.t1
chr1.3 exon 22583460 22583603 22583460 ID=MS.gene91142.t1.exon7;Parent=MS.gene91142.t1
chr1.3 CDS 22583460 22583603 22583460 ID=cds.MS.gene91142.t1;Parent=MS.gene91142.t1
chr1.3 exon 22583681 22583776 22583681 ID=MS.gene91142.t1.exon8;Parent=MS.gene91142.t1
chr1.3 CDS 22583681 22583776 22583681 ID=cds.MS.gene91142.t1;Parent=MS.gene91142.t1
chr1.3 exon 22584300 22584371 22584300 ID=MS.gene91142.t1.exon9;Parent=MS.gene91142.t1
chr1.3 CDS 22584300 22584371 22584300 ID=cds.MS.gene91142.t1;Parent=MS.gene91142.t1
chr1.3 exon 22585287 22585304 22585287 ID=MS.gene91142.t1.exon10;Parent=MS.gene91142.t1
chr1.3 CDS 22585287 22585304 22585287 ID=cds.MS.gene91142.t1;Parent=MS.gene91142.t1
Gene Sequence

>MS.gene91142

ATGGATTTGGACCAATGGATCTCGAAGGTTAAAGATGGCCAACATCTTCTCGAAGACGAACTTCAACTTCTCTGCGAATACGTATTCCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTTTTCTTTTTAGGGTTTCACTTTCAATCGATTCTTGTTCAATTCTTTCTCAACGTCTTTGATTTTCGACTTCAATTTTGTATTATCATTATTATCGTTACGCATTGAAGAGAAATTTTAGGTCTTGTTTGGTTCTGTTCAAGATTTATGTGTTTTTTCTGTTATTATTGTTTTAATTTTAATTTATTATGCTGTTTTAATTGTGTTTAATTATTTTGTTTAGTTTAAGTTTGAAATTGAAGTGATTATTATGAATGAATGTTTCAGGTTAAAGAGATCTTAATTGAGGAATCGAATGTGCAACCTGTGAATAGTCCAGTAACTGTTTGTGGTGACATTCATGGTCAGTTTCATGATCTAATGAAACTTTTTCAGACCGGTGGGCACGTGCCCGAGACTAATTACATTTTTATGGTAATTTATTTTACTATTTTATGTTATGTATTGTTGGATCTGGATGATGTTATTGTTATGTATATTTAGTGAATGTTTGTGTTACTGAATGTGTTTTAGGGTGACTTTGTTGATCGTGGTTATAATAGTCTCGAAGTATTCACCATCCTTTTGCTTCTTAAAGCTAGGTATGTTGCTTACATCTGTCTTAACTTAGATTGTGTTTATGTGACTTTGAGTAATATTGCGGCCACTTTGTAGTTTTGTGACTTTCTAATTTATTCGTCGTGTTTGGCTATGAAGCACTGACACAGACACATATACAACACCACACAGATAATAATTTTAGGAATGTTTTAGAAATTAATGAGTTGGATCGAAATATAGTTTATGATAGAACATTATGGCGTATTTTGATCCACGTGGTCAGACACTGGACACGACACCTTCATTGTGAAGTGACAATGCTACATAGGTGTATAGATCTTGAATGTTAAGAGTTATTGAGACTTTCTAATACTTTTCCTTTTATTTAAGTATCTTTTTATTTTTTGTTTGATTCTGTAGATACCCAGCTAATATAACCCTTCTACGTGGAAACCATGAAAGTAGACAACTCACACAGGTATGTGTTTAATGTACTTGGCTATCATACATCATATGAATTACAGTAGCCTTAAGTTAACATTTTAAGCAGAACATGGGAAATTATTAAAGGTTTATGCTTTATGTCATTCTAGCAAGCCAACATTGTCAATTGTGTATTGCAAAAAGTAGCGGTTTGTTCAAATTCCCGGTCATAGCAGGCTAATGATGTTTTGTTTTTGGGGGGCACATCTATAGGCCTTTTGTGATCAGGTTCTGTGGAAGGGCTGAATTATTAACTGCAATATAAACTAATAGGTCTTGATTTGTTAAAATAAATTAGGAGTCTGTTGATTATATAATTGATTCAGTGATGTAAGGACTTGTGAATTATCATTCTTGCTTTTTTACTACTGCTCTTGCTGTGGTAAGAAATGTCTAAATTTATGGATTTCTATTACAAGATCTTACAGCTTAGATGATAGTTTTTGAAAGAATTTTTCTATCATGTGCAAATTTCCACATGTTAAGAAGTTTAAAAAAGTAAGTTTACATTGGAACTTGTGTATTTAATATTAAATATGTATCTTTTTAATAAAAGGTTTCCACTTTTAGTTCTTTTAACATGTGCAATGTTGCATATGGTAGAAAACCCTTTTTGAAATGCCATTAGAAATTAGAGATGAGAAAAGTTGCCAATTGATGTTAATTTTGTGTAATTTAATATTTTGCAGGTCTATGGATTTTATGATGAATGCCAGAGAAAGTATGGAAATGCTAATGCTTGGCGATATTGTACCGATGTTTTCGACTATCTTACACTCTCTGCAATTATAGATGGAACTGTAATTCTCTTTCACTCTTTCCTTCCCTCTTTCCTCTCTCTATCCCCTACTCACATTTAAGCAGTGCATGCGCTTTTTATTTATTTTTATTTGTGCTTTAAGAAAACGTAACTCTCTTATATGCTATGGTCGACCCAGGTGCTTTGTGTTCACGGTGGCCTTTCTCCAGACATCAGAACAATTGACCAGGTTCTCTAGCTCCCTTCCCAGTTGCTGGTTGAAATCTACATTCTCTATGTATCTGTGTATTATACTATGATCCTGTTTGGATAAATAAATTAATTAAGCACCTATAACACAAGCACTTATTGTATAAGTGCTTATGTATAAGTTTTTTTCTATACCAAAACTCTAAGATAAAATAAAGTTAAACTGTTCTCATATAAGCTATAAACTGTTCTCATTAGCTATCTTGGAGAATTTATGGAAATAAGTTGAAGATAGCTTATTGATGTGTCATAAGCTCTCCTAAACAATCTTGCAAATGTTTATGTCAGTAGATAAGCTCAAATAAGCTAATCCAAATAGGCCCTAAGTGCATTTGGAATAACTTATTTTGTATTTTGAAGAACATAATAATAATGACATATAATTTTCAAAAGCTGTCTTTGTTTTAAAATTAAGCAAAACCAAATTTGTGCCATGCCAATAATGACTAGATGTCTTGCATCTTGTGTTAAGTATTTTTTTTTTTGCAGAATTTTTCCTTGACATTGTGTATGTAAACCTGTCCACCCTTTTACCACAACATGTTAATAGCGCTGATATGTGTATATGACATGATTGTATTTTTGGCACCTCTTGAATTTTGACTTCGATATTAATAGTACTGCACATAATTGTATGCTATATTTCTCCTTTTTCCTTACTTTATTCTAGGAAATCAGAGAGGTATCAGCAATGGCCTGTTTGGTTTGAAAACATGTTTTCGTTTATTATTTTACTTACGTTTTGCAAAAATGCTACCCTGTTTTTATTTTTCACTTTATGTCCTGATATTAAGATCTGTATAGGAATAATCAGGGTGACGTTTTTGTAGTTAAAAGTCAAAACATGAAATGAAAACCATTCTTTTTTGTCAAATCAAAACAGGCTGTAATGTGTTCTATGACGATTTGACTTTAGAAAACCTTCAGTTTCATTTTGCTGTACCTGTTTGGTTAATTATTAACTTTTAACAATAACTTTTTTTTTTTTTTTTTTGGAATCATTTTTAACAATAACTGTTATTCTTGAAATATAAATGATATATTCTGTCACTTTATTTATCCACTACAATAAGATATCAGTTTATATGCTATTGTTGGATAATTTACTGTTAATTCTATAGCTTAAATATTGGATTCTTACTTTTTAAAAAGGAAAAACTATGTATATTGTTTAAAATATAGTAATATAAATTTTATGACAGATAAGAGTCATTGAGCGGAACTGTGAAATTCCTCACGAGGGGCCATTTTGTGATCTTATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCACGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTTACATCTGAGGTAATGTCATGAATTGTCAATTGCTTATTGAATTGAGCTTTATGTGTGGGTTTTACTGATTCATTCTTTTCATGCAGTTTAATCATATAAACAACCTTGATCTTGTTTGTCGAGCACATCAACTTGTACAAGAAGGACTTAAGTACATGTTCCAAGATAAAGGCCTTGTAACTGTAAGCATCTGAATTTTATAAAAATTTAAGAAGACTTTGATGATTCATTTTTTTTGATCAACTGGTCTTTTGAGGTGGTTCGTCCGGGCTTGTTAAAAGACTATAGAGGCTATAGTCTGAAATAGTCCAATTAATAGGGGGGGTAAAGGAACCCCCAAAGTGTTTCAAGTAAGCGAGCTTGAGCTGTTTGAGGGGACTCGGTTATTGTTAGGTGGGGGAAGCATTGTGGGGCAAAATCAGGCTACTGCAGCTTCTCTTTCTGAGTATTTTGGAGTAGCTGTCGTGGCTGCTATCCCTCAATCTTATCCCATAAAGATCTAAGGGTGAATACACCCACACTAGCTCAATTTACAGACAAATCACTTGAGAAGGGCTTTTTTCTATTGACTAATCCATTTAGATGGTCCCACCATGTGGGATAACTTTCTTGGTAGCTATTGTATTTAATTTTCTGAAAATTTTGATTCCAGTTTTATTTGAAAATATTGAGGTAAAAAAGGTTTTTTTTTTAATAAATTTGCAGGTATGGTCTGCACCTAATTATTGTTACCGATGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGGTGAGTCAACCGAAGCTTTTTTACTTTTAAGTATATTTTAAGGACTGTCTTGATTGTTGCATCATTTGGCCTCATGGTGTATGTGTGCCTTTGTTTTTTGCATATCTCATGGGACAATCTTTTTACTTTATGCCGTTTTTCTTTATAGCTTCCAATAGTATTTCTTCTTGTATGGCCTTCATGTTAAATAAATCAAGAGACACAGGAGGATACATTTCTCTTTACTCCTATAGTTGTTGGAATTAAGAGGCATTTTTTTTTTTAAATCTTGGATGGTGCTATTCTGCAAAACAATGACTTATTTGAGGAATAGTTGGCGTGTCCATTACAGTTGGAACACATGTATGCATAATATGTCAGATTGTCAGTTACATATGGGGTATCAGAGAAAGTACTTTTAAATGACTGTTACCAATATATATCATGTACCCGGTGGAATCAGCGTTTAGAAGCTTTACATTATATCTTCGTAGTTCAAAATGACGGCTTTAATGTTAAGAGAATTTTCTTATGAAATTGGATGTTGAAAGGGAGGTCATTAGGGATGAAAATAACAGGAGAATATGGTAACTTCATCCCCCTGAAGCTGCTGATGCTCGTTAAGATAAGTTTTTAATACGAATATATCATGATATGTCCTGAGGCTTTAAACTGTGAACACACTAAAATCATAAAAATATTTACAAAGAAACCATATTAAAAAATCAATAAAACTGCCAAGGAAGTTACAAATTTTCTTGTAGATGCTATTGAAATTTTAGGAATCAGATGTAAGGAAATGAGATGTAGATGTAGATGGAGTGCATGAAAATATTAGTCTACTAATGAGGCTTTGATTAATTGCGATATAAATTATAATGCATATAAAACAGACTATTATTATTATTTTTTGTTGCTAAACTATGACTTTAACAGACCAAAGTTGTTGAATAA
Protein sequence

>MS.gene91142.t1

MDLDQWISKVKDGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMTKVVE