Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012908.t1 | XP_024634816.1 | 83 | 554 | 36 | 4 | 1 | 502 | 1 | 548 | 1.00E-199 | 706.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012908.t1 | Q9LVC3 | 33.1 | 332 | 218 | 3 | 168 | 498 | 261 | 589 | 9.1e-48 | 193.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012908.t1 | A0A072V180 | 81.5 | 536 | 60 | 3 | 1 | 503 | 1 | 530 | 5.5e-171 | 610.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016597 | MS.gene012908 | PPI |
| MS.gene012908 | MS.gene056242 | PPI |
| MS.gene012908 | MS.gene60129 | PPI |
| MS.gene88489 | MS.gene012908 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012908.t1 | MTR_3g102650 | 89.366 | 536 | 18 | 3 | 1 | 503 | 1 | 530 | 0.0 | 912 |
| MS.gene012908.t1 | MTR_2g008770 | 37.778 | 315 | 194 | 1 | 184 | 498 | 426 | 738 | 2.47e-65 | 226 |
| MS.gene012908.t1 | MTR_5g063650 | 35.345 | 348 | 217 | 5 | 154 | 500 | 367 | 707 | 8.48e-60 | 211 |
| MS.gene012908.t1 | MTR_2g006930 | 30.721 | 319 | 213 | 4 | 185 | 498 | 105 | 420 | 2.10e-44 | 163 |
| MS.gene012908.t1 | MTR_1g106975 | 30.341 | 323 | 219 | 2 | 180 | 498 | 127 | 447 | 2.36e-44 | 164 |
| MS.gene012908.t1 | MTR_1g100230 | 29.560 | 318 | 217 | 4 | 185 | 498 | 90 | 404 | 1.43e-41 | 155 |
| MS.gene012908.t1 | MTR_1g051630 | 96.875 | 64 | 2 | 0 | 264 | 327 | 38 | 101 | 5.77e-37 | 133 |
| MS.gene012908.t1 | MTR_5g062070 | 30.040 | 253 | 176 | 1 | 218 | 470 | 22 | 273 | 8.79e-35 | 134 |
| MS.gene012908.t1 | MTR_2g036900 | 27.134 | 328 | 220 | 7 | 187 | 505 | 659 | 976 | 2.31e-32 | 133 |
| MS.gene012908.t1 | MTR_2g006940 | 26.978 | 278 | 189 | 3 | 185 | 459 | 112 | 378 | 1.98e-30 | 123 |
| MS.gene012908.t1 | MTR_4g064670 | 24.885 | 434 | 256 | 12 | 103 | 488 | 535 | 946 | 3.17e-29 | 123 |
| MS.gene012908.t1 | MTR_4g064670 | 24.885 | 434 | 256 | 12 | 103 | 488 | 606 | 1017 | 3.34e-29 | 123 |
| MS.gene012908.t1 | MTR_1g094630 | 28.369 | 282 | 191 | 5 | 189 | 464 | 647 | 923 | 4.78e-29 | 122 |
| MS.gene012908.t1 | MTR_2g036900 | 29.183 | 257 | 177 | 3 | 187 | 442 | 659 | 911 | 2.05e-28 | 120 |
| MS.gene012908.t1 | MTR_2g097670 | 25.193 | 389 | 242 | 10 | 103 | 464 | 627 | 993 | 3.48e-27 | 117 |
| MS.gene012908.t1 | MTR_5g080390 | 24.740 | 384 | 257 | 10 | 101 | 464 | 582 | 953 | 1.25e-26 | 115 |
| MS.gene012908.t1 | MTR_1g094630 | 28.000 | 200 | 139 | 3 | 189 | 387 | 647 | 842 | 9.29e-19 | 90.9 |
| MS.gene012908.t1 | MTR_2g097670 | 24.430 | 307 | 189 | 8 | 103 | 387 | 627 | 912 | 3.13e-18 | 89.0 |
| MS.gene012908.t1 | MTR_2g055280 | 74.419 | 43 | 11 | 0 | 249 | 291 | 31 | 73 | 3.31e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012908.t1 | AT5G56510 | 36.145 | 332 | 208 | 3 | 168 | 498 | 261 | 589 | 4.47e-63 | 218 |
| MS.gene012908.t1 | AT5G56510 | 36.145 | 332 | 208 | 3 | 168 | 498 | 261 | 589 | 4.47e-63 | 218 |
| MS.gene012908.t1 | AT5G56510 | 36.145 | 332 | 208 | 3 | 168 | 498 | 261 | 589 | 4.47e-63 | 218 |
| MS.gene012908.t1 | AT5G56510 | 36.145 | 332 | 208 | 3 | 168 | 498 | 261 | 589 | 4.47e-63 | 218 |
| MS.gene012908.t1 | AT5G56510 | 36.145 | 332 | 208 | 3 | 168 | 498 | 261 | 589 | 4.47e-63 | 218 |
| MS.gene012908.t1 | AT1G22240 | 35.962 | 317 | 199 | 3 | 184 | 500 | 198 | 510 | 4.78e-61 | 210 |
| MS.gene012908.t1 | AT5G56510 | 36.424 | 302 | 190 | 2 | 168 | 468 | 261 | 561 | 1.06e-58 | 205 |
| MS.gene012908.t1 | AT4G08840 | 37.580 | 314 | 190 | 4 | 187 | 500 | 244 | 551 | 9.34e-58 | 202 |
| MS.gene012908.t1 | AT1G78160 | 34.700 | 317 | 203 | 3 | 184 | 500 | 333 | 645 | 2.45e-57 | 203 |
| MS.gene012908.t1 | AT1G78160 | 34.700 | 317 | 203 | 3 | 184 | 500 | 335 | 647 | 2.91e-57 | 203 |
| MS.gene012908.t1 | AT1G35730 | 36.364 | 286 | 179 | 2 | 184 | 469 | 249 | 531 | 1.26e-52 | 188 |
| MS.gene012908.t1 | AT1G35730 | 36.364 | 286 | 179 | 2 | 184 | 469 | 255 | 537 | 1.67e-52 | 188 |
| MS.gene012908.t1 | AT5G43090 | 32.508 | 323 | 208 | 5 | 186 | 503 | 210 | 527 | 2.25e-49 | 179 |
| MS.gene012908.t1 | AT1G35750 | 34.069 | 317 | 203 | 4 | 184 | 500 | 213 | 523 | 3.26e-47 | 173 |
| MS.gene012908.t1 | AT4G08560 | 35.764 | 288 | 172 | 3 | 186 | 463 | 152 | 436 | 4.50e-47 | 171 |
| MS.gene012908.t1 | AT5G43110 | 32.416 | 327 | 210 | 6 | 182 | 503 | 198 | 518 | 5.68e-41 | 155 |
| MS.gene012908.t1 | AT3G20250 | 25.684 | 475 | 318 | 13 | 50 | 505 | 442 | 900 | 4.49e-32 | 132 |
| MS.gene012908.t1 | AT3G20250 | 25.684 | 475 | 318 | 13 | 50 | 505 | 478 | 936 | 5.57e-32 | 132 |
| MS.gene012908.t1 | AT3G20250 | 25.684 | 475 | 318 | 13 | 50 | 505 | 478 | 936 | 5.57e-32 | 132 |
| MS.gene012908.t1 | AT4G25880 | 27.439 | 328 | 223 | 8 | 182 | 502 | 530 | 849 | 2.20e-31 | 130 |
| MS.gene012908.t1 | AT4G25880 | 27.439 | 328 | 223 | 8 | 182 | 502 | 530 | 849 | 2.65e-31 | 129 |
| MS.gene012908.t1 | AT4G25880 | 27.439 | 328 | 223 | 8 | 182 | 502 | 530 | 849 | 2.65e-31 | 129 |
| MS.gene012908.t1 | AT3G10360 | 29.066 | 289 | 194 | 5 | 182 | 464 | 662 | 945 | 2.81e-30 | 126 |
| MS.gene012908.t1 | AT4G25880 | 27.439 | 328 | 219 | 9 | 186 | 502 | 524 | 843 | 3.63e-28 | 120 |
| MS.gene012908.t1 | AT4G25880 | 27.439 | 328 | 219 | 9 | 186 | 502 | 524 | 843 | 3.69e-28 | 120 |
| MS.gene012908.t1 | AT2G29200 | 24.854 | 342 | 224 | 6 | 175 | 488 | 621 | 957 | 6.78e-26 | 113 |
| MS.gene012908.t1 | AT2G29200 | 24.854 | 342 | 224 | 6 | 175 | 488 | 621 | 957 | 6.78e-26 | 113 |
| MS.gene012908.t1 | AT2G29190 | 25.826 | 333 | 214 | 6 | 184 | 488 | 634 | 961 | 1.02e-25 | 112 |
| MS.gene012908.t1 | AT2G29190 | 25.826 | 333 | 214 | 6 | 184 | 488 | 634 | 961 | 1.02e-25 | 112 |
| MS.gene012908.t1 | AT2G29140 | 24.855 | 346 | 219 | 7 | 175 | 488 | 617 | 953 | 5.84e-24 | 107 |
| MS.gene012908.t1 | AT2G29140 | 24.855 | 346 | 219 | 7 | 175 | 488 | 617 | 953 | 5.84e-24 | 107 |
| MS.gene012908.t1 | AT5G09610 | 26.457 | 223 | 152 | 5 | 266 | 482 | 261 | 477 | 2.58e-15 | 79.3 |
| MS.gene012908.t1 | AT5G60180 | 25.714 | 245 | 179 | 2 | 228 | 471 | 48 | 290 | 1.04e-14 | 75.9 |
| MS.gene012908.t1 | AT5G60110 | 25.714 | 245 | 179 | 2 | 228 | 471 | 48 | 290 | 3.17e-14 | 74.3 |
| MS.gene012908.t1 | AT5G59280 | 26.887 | 212 | 149 | 4 | 256 | 464 | 79 | 287 | 2.53e-13 | 71.6 |
| MS.gene012908.t1 | AT1G35850 | 28.718 | 195 | 133 | 4 | 273 | 464 | 21 | 212 | 4.49e-13 | 70.1 |
| MS.gene012908.t1 | AT1G21620 | 25.652 | 230 | 136 | 5 | 239 | 465 | 69 | 266 | 1.27e-12 | 69.3 |
| MS.gene012908.t1 | AT1G35850 | 30.968 | 155 | 103 | 3 | 313 | 464 | 106 | 259 | 6.86e-12 | 67.0 |
Find 120 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGCATTGAATAAATTTA+AGG | 0.145874 | 3.4:+90410049 | MS.gene012908:CDS |
| GCAAGAAGTGATGGCAAATT+TGG | 0.156557 | 3.4:+90408489 | MS.gene012908:CDS |
| CCTTATTATAACTATAACTA+TGG | 0.167753 | 3.4:+90408082 | MS.gene012908:CDS |
| CAAGAAGTGATGGCAAATTT+GGG | 0.276799 | 3.4:+90408490 | MS.gene012908:CDS |
| CCGAAAGATTGATTAGGATT+AGG | 0.291834 | 3.4:-90407998 | None:intergenic |
| TAGCAATATGTTTGGCAAAA+AGG | 0.298521 | 3.4:+90410655 | MS.gene012908:CDS |
| TATGGATATTGTTATTGTTT+TGG | 0.301714 | 3.4:-90407895 | None:intergenic |
| CCATAGTTATAGTTATAATA+AGG | 0.308433 | 3.4:-90408082 | None:intergenic |
| CCTAATCAATCTTTCGGTTA+TGG | 0.311110 | 3.4:+90408004 | MS.gene012908:CDS |
| GCTTGTTCTAGGGTTTGATT+AGG | 0.312082 | 3.4:-90407950 | None:intergenic |
| TCTCTTTCCTGCAATAAATA+TGG | 0.314796 | 3.4:+90409897 | MS.gene012908:CDS |
| TTTGAGCCATGAAAGGGTTT+TGG | 0.330120 | 3.4:-90407919 | None:intergenic |
| ATTACTGCCATATTTATTGC+AGG | 0.345089 | 3.4:-90409904 | None:intergenic |
| AGGCTCCTTACGGATCCTTA+TGG | 0.349807 | 3.4:+90410011 | MS.gene012908:CDS |
| AATAATAATAACTTAGCTTA+TGG | 0.353348 | 3.4:+90408154 | MS.gene012908:CDS |
| AAGTTATTATTATTCCTAAC+AGG | 0.357786 | 3.4:-90408145 | None:intergenic |
| CTAACAGGTGTATTGAAATC+AGG | 0.360201 | 3.4:-90408130 | None:intergenic |
| CCTAATCCTAATCAATCTTT+CGG | 0.366022 | 3.4:+90407998 | MS.gene012908:CDS |
| GTAAGGAGCCTTGTTACATT+AGG | 0.367914 | 3.4:-90409999 | None:intergenic |
| TGGAGCTATTGTATTGTCTA+AGG | 0.373255 | 3.4:+90408893 | MS.gene012908:CDS |
| AGAATTTGCCTTAGTCTTCA+TGG | 0.374945 | 3.4:+90408679 | MS.gene012908:CDS |
| GTTAATAATGTTAATGTGAA+TGG | 0.380545 | 3.4:+90408388 | MS.gene012908:CDS |
| GTATTGTCTAAGGATATTAA+TGG | 0.390496 | 3.4:+90408903 | MS.gene012908:CDS |
| TAATCACATGTGTGAGTTGA+TGG | 0.391134 | 3.4:+90408549 | MS.gene012908:CDS |
| CTTATGATGTAAATCAGATT+AGG | 0.392575 | 3.4:+90408218 | MS.gene012908:CDS |
| CCATAACCAAAACCCTTTCA+TGG | 0.399823 | 3.4:+90407913 | MS.gene012908:CDS |
| CTGATTTCAATACACCTGTT+AGG | 0.405041 | 3.4:+90408131 | MS.gene012908:CDS |
| TAAGAATGCCTTGGAGGAAC+TGG | 0.415665 | 3.4:+90410607 | MS.gene012908:CDS |
| AATTAGACCTCTTTGCTCTC+TGG | 0.422483 | 3.4:-90408853 | None:intergenic |
| TATTAGCTGAAGATTGTTAC+GGG | 0.425499 | 3.4:+90409698 | MS.gene012908:CDS |
| CCATAACCGAAAGATTGATT+AGG | 0.431264 | 3.4:-90408004 | None:intergenic |
| GGTTGATCCTATTGGTTATG+AGG | 0.433190 | 3.4:+90408570 | MS.gene012908:CDS |
| CTATTAGCTGAAGATTGTTA+CGG | 0.439528 | 3.4:+90409697 | MS.gene012908:CDS |
| CTGAAAATACCAACAGTCTC+AGG | 0.440858 | 3.4:+90409840 | MS.gene012908:CDS |
| GTAATAACCTCATAACCAAT+AGG | 0.443299 | 3.4:-90408577 | None:intergenic |
| AAAGGTGCTTGATAAGTATG+AGG | 0.451082 | 3.4:+90410673 | MS.gene012908:CDS |
| GAACAGTTTATGGACTATAG+AGG | 0.452254 | 3.4:+90410924 | MS.gene012908:CDS |
| CTTGTTCTAGGGTTTGATTA+GGG | 0.459212 | 3.4:-90407949 | None:intergenic |
| ATGAATCCTCTGTGCCAACT+TGG | 0.471920 | 3.4:+90408347 | MS.gene012908:CDS |
| CACTGTGATCGAGGTGATAA+CGG | 0.474336 | 3.4:-90407830 | None:intergenic |
| CTTGTTGTGTGTTACTGGCA+TGG | 0.475357 | 3.4:+90410876 | MS.gene012908:CDS |
| TAGCAATTCTATAATGATGC+AGG | 0.476010 | 3.4:-90409970 | None:intergenic |
| ATTATGTCAGCTTTGACCCC+TGG | 0.477722 | 3.4:+90408873 | MS.gene012908:CDS |
| TGGCAAATTTGGGGCCTGAA+GGG | 0.481344 | 3.4:+90408500 | MS.gene012908:CDS |
| ATGATGCGTAGCAATATGTT+TGG | 0.481616 | 3.4:+90410647 | MS.gene012908:CDS |
| AAAGACTCAGATTGTTCTGT+TGG | 0.482072 | 3.4:+90408630 | MS.gene012908:CDS |
| TTATGAGGTTATTACAAAGA+TGG | 0.482412 | 3.4:+90408585 | MS.gene012908:CDS |
| TAACAATCTTCAGCTAATAG+TGG | 0.485810 | 3.4:-90409694 | None:intergenic |
| TTAGCTTATGGTAGAGGTAG+AGG | 0.486983 | 3.4:+90408166 | MS.gene012908:CDS |
| GAATTTGCCTTAGTCTTCAT+GGG | 0.497383 | 3.4:+90408680 | MS.gene012908:CDS |
| ATACTGCAGCACACAACATC+CGG | 0.501075 | 3.4:-90409608 | None:intergenic |
| TTAGACAATACAATAGCTCC+AGG | 0.504045 | 3.4:-90408891 | None:intergenic |
| GGCAAATTTGGGGCCTGAAG+GGG | 0.504390 | 3.4:+90408501 | MS.gene012908:CDS |
| TTAATAATGTTAATGTGAAT+GGG | 0.506486 | 3.4:+90408389 | MS.gene012908:CDS |
| CTTAATGATTATGATTACTC+TGG | 0.507034 | 3.4:+90408040 | MS.gene012908:CDS |
| TAATGTAACAAGGCTCCTTA+CGG | 0.508224 | 3.4:+90410001 | MS.gene012908:CDS |
| TTTCATTGCAATGGAAGCTC+GGG | 0.508445 | 3.4:+90410965 | MS.gene012908:CDS |
| CCTAACGATTCTGTCGATAA+CGG | 0.508868 | 3.4:+90407800 | MS.gene012908:CDS |
| ATTCATTAAGAATGCCTTGG+AGG | 0.509107 | 3.4:+90410601 | MS.gene012908:CDS |
| CATTGGTTTGATGAATTTCG+TGG | 0.510977 | 3.4:+90408421 | MS.gene012908:CDS |
| ATACAAATTGCTGCTGAAGC+TGG | 0.513224 | 3.4:-90409875 | None:intergenic |
| AATAACTTAGCTTATGGTAG+AGG | 0.515646 | 3.4:+90408160 | MS.gene012908:CDS |
| AAATATACCCATGAAGACTA+AGG | 0.517695 | 3.4:-90408687 | None:intergenic |
| ATTGCAATGGAAGCTCGGGC+TGG | 0.519277 | 3.4:+90410969 | MS.gene012908:CDS |
| GCTGCTGAAGCTGGTGGTGT+AGG | 0.519438 | 3.4:-90409866 | None:intergenic |
| TTTCGATTTGAGCCATGAAA+GGG | 0.528174 | 3.4:-90407925 | None:intergenic |
| TCGTGGGAGGGTTTATTCGT+TGG | 0.530782 | 3.4:+90408438 | MS.gene012908:CDS |
| ATGGCAAATTTGGGGCCTGA+AGG | 0.531879 | 3.4:+90408499 | MS.gene012908:CDS |
| GTTTGATGAATTTCGTGGGA+GGG | 0.531922 | 3.4:+90408426 | MS.gene012908:CDS |
| GAGTTGATGGTTGATCCTAT+TGG | 0.533865 | 3.4:+90408562 | MS.gene012908:CDS |
| CTGATGACAAAATTTCCATA+AGG | 0.535242 | 3.4:-90410026 | None:intergenic |
| GCAGCATCATTAACCCAAGT+TGG | 0.538893 | 3.4:-90408361 | None:intergenic |
| CCGTTATCGACAGAATCGTT+AGG | 0.539438 | 3.4:-90407800 | None:intergenic |
| CTTATTATAACTATAACTAT+GGG | 0.545461 | 3.4:+90408083 | MS.gene012908:CDS |
| TGAATCCTCTGTGCCAACTT+GGG | 0.546933 | 3.4:+90408348 | MS.gene012908:CDS |
| TAGATTCATTAAGAATGCCT+TGG | 0.547602 | 3.4:+90410598 | MS.gene012908:CDS |
| TCGTTCTGTTGAGAAACTGT+TGG | 0.549400 | 3.4:+90408818 | MS.gene012908:CDS |
| TGAGGTTATTACAAAGATGG+TGG | 0.551949 | 3.4:+90408588 | MS.gene012908:CDS |
| ATCGACAGAATCGTTAGGAA+TGG | 0.551977 | 3.4:-90407795 | None:intergenic |
| GATTATGATTACTCTGGTGT+TGG | 0.556049 | 3.4:+90408046 | MS.gene012908:CDS |
| TCTTAGTTGCTCCTTGAGCA+TGG | 0.557687 | 3.4:-90409639 | None:intergenic |
| TAAATATGGCAGTAATGTAG+TGG | 0.558149 | 3.4:+90409911 | MS.gene012908:CDS |
| TAAGAACTCAACCGCGGCGA+CGG | 0.561032 | 3.4:-90408199 | None:intergenic |
| TGTGTGTTACTGGCATGGAA+TGG | 0.564297 | 3.4:+90410881 | MS.gene012908:CDS |
| GAGGGTTTATTCGTTGGCAA+AGG | 0.567594 | 3.4:+90408444 | MS.gene012908:CDS |
| TGTTACTGGCATGGAATGGA+TGG | 0.571812 | 3.4:+90410885 | MS.gene012908:CDS |
| GAACTCAACCGCGGCGACGG+CGG | 0.574065 | 3.4:-90408196 | None:intergenic |
| ATTGGTTTGATGAATTTCGT+GGG | 0.575858 | 3.4:+90408422 | MS.gene012908:CDS |
| TGCTTCGACCAGTTCCTCCA+AGG | 0.576223 | 3.4:-90410615 | None:intergenic |
| TCACTTTCAAGAGATAAGAC+CGG | 0.578672 | 3.4:+90409589 | MS.gene012908:CDS |
| TTTACCTCAGTATCAGCATG+TGG | 0.579642 | 3.4:-90408960 | None:intergenic |
| TAGACCTCTTTGCTCTCTGG+TGG | 0.585063 | 3.4:-90408850 | None:intergenic |
| TTTCCCACATGCTGATACTG+AGG | 0.590378 | 3.4:+90408956 | MS.gene012908:CDS |
| AATTTCTTGCAATAACTCCC+AGG | 0.592318 | 3.4:-90409561 | None:intergenic |
| GAATTTCGCCGCCGTCGCCG+CGG | 0.598215 | 3.4:+90408188 | MS.gene012908:CDS |
| GTATTGAAATCAGGTTGACT+AGG | 0.599712 | 3.4:-90408121 | None:intergenic |
| GGTTTGATGAATTTCGTGGG+AGG | 0.614649 | 3.4:+90408425 | MS.gene012908:CDS |
| CATTGCAATGAAAACAGCTA+CGG | 0.617401 | 3.4:-90410955 | None:intergenic |
| GGATATTAATGGTCATCGTG+TGG | 0.622294 | 3.4:+90408914 | MS.gene012908:CDS |
| AAGGTGCTTGATAAGTATGA+GGG | 0.623255 | 3.4:+90410674 | MS.gene012908:CDS |
| TGTAGGTTGCCTGAGACTGT+TGG | 0.624539 | 3.4:-90409849 | None:intergenic |
| AATTTCCATAAGGATCCGTA+AGG | 0.628856 | 3.4:-90410016 | None:intergenic |
| TATTGTGTTAGCCATGCTCA+AGG | 0.630724 | 3.4:+90409628 | MS.gene012908:CDS |
| TAGACAATACAATAGCTCCA+GGG | 0.639470 | 3.4:-90408890 | None:intergenic |
| AAGAAGTGATGGCAAATTTG+GGG | 0.640787 | 3.4:+90408491 | MS.gene012908:CDS |
| TAACTCAACCACTGTGATCG+AGG | 0.642608 | 3.4:-90407839 | None:intergenic |
| CAAATTGCTGCTGAAGCTGG+TGG | 0.647530 | 3.4:-90409872 | None:intergenic |
| TTACCTCAGTATCAGCATGT+GGG | 0.651847 | 3.4:-90408959 | None:intergenic |
| ACTGGCATGGAATGGATGGA+AGG | 0.654971 | 3.4:+90410889 | MS.gene012908:CDS |
| AGACAATACAATAGCTCCAG+GGG | 0.662124 | 3.4:-90408889 | None:intergenic |
| GTTCTGTTGGTCACACACCA+TGG | 0.665936 | 3.4:+90408643 | MS.gene012908:CDS |
| TAAATGATCCTAATGTAACA+AGG | 0.666099 | 3.4:+90409991 | MS.gene012908:CDS |
| TTCTGATAAGCTGAGCACCA+TGG | 0.674737 | 3.4:-90408660 | None:intergenic |
| GTTACCACCAGAGAGCAAAG+AGG | 0.674944 | 3.4:+90408846 | MS.gene012908:CDS |
| TCGTTGGCAAAGGATACACA+TGG | 0.681587 | 3.4:+90408454 | MS.gene012908:CDS |
| ATTAACCCAAGTTGGCACAG+AGG | 0.702236 | 3.4:-90408353 | None:intergenic |
| TGAATGGGATGAATGCACAT+TGG | 0.705135 | 3.4:+90408404 | MS.gene012908:CDS |
| CGTTGGCAAAGGATACACAT+GGG | 0.721395 | 3.4:+90408455 | MS.gene012908:CDS |
| CGTTATCACCTCGATCACAG+TGG | 0.749783 | 3.4:+90407831 | MS.gene012908:CDS |
| ACATCATAAGAACTCAACCG+CGG | 0.776372 | 3.4:-90408205 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAAAACAAAAAAAA+AGG | + | chr3.4:90410809-90410828 | MS.gene012908:intron | 10.0% |
| !! | ACAAAAAAAACAAAAAAAAA+GGG | + | chr3.4:90410810-90410829 | MS.gene012908:intron | 10.0% |
| !! | ATCTATTTAAATGTAATTTA+AGG | + | chr3.4:90409088-90409107 | MS.gene012908:intron | 10.0% |
| !!! | TTTTGTTTTTTTTGTTTTTT+TGG | - | chr3.4:90410805-90410824 | None:intergenic | 10.0% |
| !! | AATAATAATAACTTAGCTTA+TGG | + | chr3.4:90408154-90408173 | MS.gene012908:CDS | 15.0% |
| !! | CTTATTATAACTATAACTAT+GGG | + | chr3.4:90408083-90408102 | MS.gene012908:CDS | 15.0% |
| !! | TTAATAATGTTAATGTGAAT+GGG | + | chr3.4:90408389-90408408 | MS.gene012908:CDS | 15.0% |
| !!! | TTAACACACTAATTTTAAAA+GGG | - | chr3.4:90410753-90410772 | None:intergenic | 15.0% |
| !!! | TTTTTCTTATTCAATAAACA+GGG | + | chr3.4:90410572-90410591 | MS.gene012908:intron | 15.0% |
| !! | AAAATCTTAGTCAATTTATG+AGG | - | chr3.4:90409119-90409138 | None:intergenic | 20.0% |
| !! | AAGTTATTATTATTCCTAAC+AGG | - | chr3.4:90408148-90408167 | None:intergenic | 20.0% |
| !! | AATAAACTGCTTAAAAATTG+AGG | - | chr3.4:90410349-90410368 | None:intergenic | 20.0% |
| !! | ATCATTTACTGTAAAAAATG+TGG | - | chr3.4:90409362-90409381 | None:intergenic | 20.0% |
| !! | ATTAGGTATAATCATTTGAA+TGG | + | chr3.4:90408235-90408254 | MS.gene012908:intron | 20.0% |
| !! | CACTATTATTAGATAAATAC+CGG | + | chr3.4:90409479-90409498 | MS.gene012908:intron | 20.0% |
| !! | CCATAGTTATAGTTATAATA+AGG | - | chr3.4:90408085-90408104 | None:intergenic | 20.0% |
| !! | CCTTATTATAACTATAACTA+TGG | + | chr3.4:90408082-90408101 | MS.gene012908:CDS | 20.0% |
| !! | GTTAATAATGTTAATGTGAA+TGG | + | chr3.4:90408388-90408407 | MS.gene012908:CDS | 20.0% |
| !! | TAAAAAATGTGGATAAAGAA+AGG | - | chr3.4:90409351-90409370 | None:intergenic | 20.0% |
| !! | TACTGCATTGAATAAATTTA+AGG | + | chr3.4:90410049-90410068 | MS.gene012908:CDS | 20.0% |
| !! | TTAGGTATAATCATTTGAAT+GGG | + | chr3.4:90408236-90408255 | MS.gene012908:intron | 20.0% |
| !!! | AGTTAAGTAATTTTTCAAAC+CGG | - | chr3.4:90409501-90409520 | None:intergenic | 20.0% |
| !!! | ATGGCTAAATTATTTTAAAG+AGG | + | chr3.4:90410275-90410294 | MS.gene012908:intron | 20.0% |
| !!! | ATTTTAAAGAGGCTTAAAAT+TGG | + | chr3.4:90410286-90410305 | MS.gene012908:intron | 20.0% |
| !!! | CTTAACACACTAATTTTAAA+AGG | - | chr3.4:90410754-90410773 | None:intergenic | 20.0% |
| !!! | GTTTTTCTTATTCAATAAAC+AGG | + | chr3.4:90410571-90410590 | MS.gene012908:intron | 20.0% |
| !!! | TAAATTGACTAAGATTTTGT+CGG | + | chr3.4:90409121-90409140 | MS.gene012908:intron | 20.0% |
| !!! | TAGATTGTTTTGTTTGTAAA+AGG | - | chr3.4:90409073-90409092 | None:intergenic | 20.0% |
| !!! | TATCACTCAATTTTCTAATT+CGG | + | chr3.4:90410118-90410137 | MS.gene012908:intron | 20.0% |
| !!! | TATGGATATTGTTATTGTTT+TGG | - | chr3.4:90407898-90407917 | None:intergenic | 20.0% |
| !!! | TATGGTAATGATATGTTTTA+TGG | + | chr3.4:90408283-90408302 | MS.gene012908:intron | 20.0% |
| !!! | TATTGTTATTGTTTTGGTTT+TGG | - | chr3.4:90407892-90407911 | None:intergenic | 20.0% |
| !!! | TCATTTTTTTCTTCTTTAGA+TGG | + | chr3.4:90410256-90410275 | MS.gene012908:intron | 20.0% |
| !!! | TTTTTTACAGTAAATGATAG+CGG | + | chr3.4:90409364-90409383 | MS.gene012908:intron | 20.0% |
| ! | ACAATGAAGATTAGTAAAGT+TGG | - | chr3.4:90409769-90409788 | None:intergenic | 25.0% |
| ! | ATAAGTATGAGGGTAAAAAT+CGG | + | chr3.4:90410684-90410703 | MS.gene012908:intron | 25.0% |
| ! | ATTAGTAAAGTTGGCTATAT+TGG | - | chr3.4:90409760-90409779 | None:intergenic | 25.0% |
| ! | CGGTATTTATCTAATAATAG+TGG | - | chr3.4:90409481-90409500 | None:intergenic | 25.0% |
| ! | CTTAATGATTATGATTACTC+TGG | + | chr3.4:90408040-90408059 | MS.gene012908:CDS | 25.0% |
| ! | CTTATGATGTAAATCAGATT+AGG | + | chr3.4:90408218-90408237 | MS.gene012908:CDS | 25.0% |
| ! | GAAAAACAAAGTTATCACAA+CGG | - | chr3.4:90410558-90410577 | None:intergenic | 25.0% |
| ! | GTATTGTCTAAGGATATTAA+TGG | + | chr3.4:90408903-90408922 | MS.gene012908:CDS | 25.0% |
| ! | TAAATGATCCTAATGTAACA+AGG | + | chr3.4:90409991-90410010 | MS.gene012908:CDS | 25.0% |
| ! | TAGGTATAATCATTTGAATG+GGG | + | chr3.4:90408237-90408256 | MS.gene012908:intron | 25.0% |
| ! | TTATGAGGTTATTACAAAGA+TGG | + | chr3.4:90408585-90408604 | MS.gene012908:CDS | 25.0% |
| ! | TTCAGTTTATGTTCTGATTA+TGG | + | chr3.4:90409520-90409539 | MS.gene012908:intron | 25.0% |
| !! | AAATTGACTAAGATTTTGTC+GGG | + | chr3.4:90409122-90409141 | MS.gene012908:intron | 25.0% |
| !! | AATTTTCTAATTCGGTATCT+TGG | + | chr3.4:90410126-90410145 | MS.gene012908:intron | 25.0% |
| !! | ATGTAACACATGGTTTTTAT+TGG | + | chr3.4:90410408-90410427 | MS.gene012908:intron | 25.0% |
| !! | GAAATTTTCAATGTGCTTTA+AGG | + | chr3.4:90408323-90408342 | MS.gene012908:intron | 25.0% |
| !! | TCTTTGTTTCTTGTTTCTTA+AGG | + | chr3.4:90408717-90408736 | MS.gene012908:intron | 25.0% |
| !! | TTTAAGCAGTTTATTTGTTG+TGG | + | chr3.4:90410354-90410373 | MS.gene012908:intron | 25.0% |
| !!! | AAGTTCTAAAGAAAGGAAAA+AGG | + | chr3.4:90409451-90409470 | MS.gene012908:intron | 25.0% |
| !!! | TATTGTTTTGGTTTTGGTTT+TGG | - | chr3.4:90407886-90407905 | None:intergenic | 25.0% |
| !!! | TTTTCCTTTCTTTAGAACTT+AGG | - | chr3.4:90409451-90409470 | None:intergenic | 25.0% |
| AAATATACCCATGAAGACTA+AGG | - | chr3.4:90408690-90408709 | None:intergenic | 30.0% | |
| AACAAAAAAAAAGGGACCTT+AGG | + | chr3.4:90410818-90410837 | MS.gene012908:intron | 30.0% | |
| AATAACTTAGCTTATGGTAG+AGG | + | chr3.4:90408160-90408179 | MS.gene012908:CDS | 30.0% | |
| ACAAAAAAAAAGGGACCTTA+GGG | + | chr3.4:90410819-90410838 | MS.gene012908:intron | 30.0% | |
| AGGTATAATCATTTGAATGG+GGG | + | chr3.4:90408238-90408257 | MS.gene012908:intron | 30.0% | |
| ATTACTGCCATATTTATTGC+AGG | - | chr3.4:90409907-90409926 | None:intergenic | 30.0% | |
| CCTAATCCTAATCAATCTTT+CGG | + | chr3.4:90407998-90408017 | MS.gene012908:CDS | 30.0% | |
| CTATTAGCTGAAGATTGTTA+CGG | + | chr3.4:90409697-90409716 | MS.gene012908:CDS | 30.0% | |
| CTGATGACAAAATTTCCATA+AGG | - | chr3.4:90410029-90410048 | None:intergenic | 30.0% | |
| CTTAGTCAATTTATGAGGAA+CGG | - | chr3.4:90409114-90409133 | None:intergenic | 30.0% | |
| GTAATAACCTCATAACCAAT+AGG | - | chr3.4:90408580-90408599 | None:intergenic | 30.0% | |
| TAAATATGGCAGTAATGTAG+TGG | + | chr3.4:90409911-90409930 | MS.gene012908:CDS | 30.0% | |
| TAACAATCTTCAGCTAATAG+TGG | - | chr3.4:90409697-90409716 | None:intergenic | 30.0% | |
| TAGATTCATTAAGAATGCCT+TGG | + | chr3.4:90410598-90410617 | MS.gene012908:CDS | 30.0% | |
| TAGCAATATGTTTGGCAAAA+AGG | + | chr3.4:90410655-90410674 | MS.gene012908:CDS | 30.0% | |
| TAGCAATTCTATAATGATGC+AGG | - | chr3.4:90409973-90409992 | None:intergenic | 30.0% | |
| TATTAGCTGAAGATTGTTAC+GGG | + | chr3.4:90409698-90409717 | MS.gene012908:CDS | 30.0% | |
| TCTCTTTCCTGCAATAAATA+TGG | + | chr3.4:90409897-90409916 | MS.gene012908:CDS | 30.0% | |
| TGAAACAAACATGTAACACA+TGG | + | chr3.4:90410398-90410417 | MS.gene012908:intron | 30.0% | |
| ! | AATTGACTAAGATTTTGTCG+GGG | + | chr3.4:90409123-90409142 | MS.gene012908:intron | 30.0% |
| ! | GAAAAGTTTTTGCATGATTC+AGG | + | chr3.4:90409933-90409952 | MS.gene012908:CDS | 30.0% |
| ! | GACACTTTAAGTTCAAATTG+TGG | + | chr3.4:90409045-90409064 | MS.gene012908:intron | 30.0% |
| !! | ATTGGTTTGATGAATTTCGT+GGG | + | chr3.4:90408422-90408441 | MS.gene012908:CDS | 30.0% |
| !! | TTAGTTTTCATAGTGTAGCA+TGG | - | chr3.4:90409286-90409305 | None:intergenic | 30.0% |
| !! | TTTGCCTAAGTTCTAAAGAA+AGG | + | chr3.4:90409444-90409463 | MS.gene012908:intron | 30.0% |
| !!! | TTGGTTTTGGTTTTGGTTTT+GGG | - | chr3.4:90407879-90407898 | None:intergenic | 30.0% |
| !!! | TTTGCTTTTGGAACAGTTTA+TGG | + | chr3.4:90410914-90410933 | MS.gene012908:CDS | 30.0% |
| !!! | TTTGGTTTTGGTTTTGGTTT+TGG | - | chr3.4:90407880-90407899 | None:intergenic | 30.0% |
| AAAACAACACACATACCCTA+AGG | - | chr3.4:90410837-90410856 | None:intergenic | 35.0% | |
| AAACCATGCATTTCACTCTT+TGG | - | chr3.4:90410159-90410178 | None:intergenic | 35.0% | |
| AAAGACTCAGATTGTTCTGT+TGG | + | chr3.4:90408630-90408649 | MS.gene012908:CDS | 35.0% | |
| AAGAAGTGATGGCAAATTTG+GGG | + | chr3.4:90408491-90408510 | MS.gene012908:CDS | 35.0% | |
| AATTTCCATAAGGATCCGTA+AGG | - | chr3.4:90410019-90410038 | None:intergenic | 35.0% | |
| AATTTCTTGCAATAACTCCC+AGG | - | chr3.4:90409564-90409583 | None:intergenic | 35.0% | |
| ACATGTATTTCATACCTGCT+AGG | + | chr3.4:90410722-90410741 | MS.gene012908:intron | 35.0% | |
| ATGATGCGTAGCAATATGTT+TGG | + | chr3.4:90410647-90410666 | MS.gene012908:CDS | 35.0% | |
| ATTCATTAAGAATGCCTTGG+AGG | + | chr3.4:90410601-90410620 | MS.gene012908:CDS | 35.0% | |
| CAAGAAGTGATGGCAAATTT+GGG | + | chr3.4:90408490-90408509 | MS.gene012908:CDS | 35.0% | |
| CATTGCAATGAAAACAGCTA+CGG | - | chr3.4:90410958-90410977 | None:intergenic | 35.0% | |
| CCATAACCGAAAGATTGATT+AGG | - | chr3.4:90408007-90408026 | None:intergenic | 35.0% | |
| CCGAAAGATTGATTAGGATT+AGG | - | chr3.4:90408001-90408020 | None:intergenic | 35.0% | |
| CCTAATCAATCTTTCGGTTA+TGG | + | chr3.4:90408004-90408023 | MS.gene012908:CDS | 35.0% | |
| CTAACAGGTGTATTGAAATC+AGG | - | chr3.4:90408133-90408152 | None:intergenic | 35.0% | |
| CTGATTTCAATACACCTGTT+AGG | + | chr3.4:90408131-90408150 | MS.gene012908:CDS | 35.0% | |
| GATTATGATTACTCTGGTGT+TGG | + | chr3.4:90408046-90408065 | MS.gene012908:CDS | 35.0% | |
| TAATGTAACAAGGCTCCTTA+CGG | + | chr3.4:90410001-90410020 | MS.gene012908:CDS | 35.0% | |
| TAGACAATACAATAGCTCCA+GGG | - | chr3.4:90408893-90408912 | None:intergenic | 35.0% | |
| TCAACAGAATAATTGCCAAC+AGG | - | chr3.4:90410381-90410400 | None:intergenic | 35.0% | |
| TCACTTTCAAGAGATAAGAC+CGG | + | chr3.4:90409589-90409608 | MS.gene012908:CDS | 35.0% | |
| TGAGGTTATTACAAAGATGG+TGG | + | chr3.4:90408588-90408607 | MS.gene012908:CDS | 35.0% | |
| TGGAGCTATTGTATTGTCTA+AGG | + | chr3.4:90408893-90408912 | MS.gene012908:CDS | 35.0% | |
| TTAGACAATACAATAGCTCC+AGG | - | chr3.4:90408894-90408913 | None:intergenic | 35.0% | |
| ! | AAAAAGTATGAAACCCCTTC+AGG | - | chr3.4:90408517-90408536 | None:intergenic | 35.0% |
| ! | AAGGTGCTTGATAAGTATGA+GGG | + | chr3.4:90410674-90410693 | MS.gene012908:CDS | 35.0% |
| ! | AATCATTTGAATGGGGGTAT+TGG | + | chr3.4:90408244-90408263 | MS.gene012908:intron | 35.0% |
| ! | ACGAGAAAAAGCTTGTTCTA+GGG | - | chr3.4:90407963-90407982 | None:intergenic | 35.0% |
| ! | ACTTTTGTCACAGAAATTCC+TGG | + | chr3.4:90409543-90409562 | MS.gene012908:intron | 35.0% |
| ! | AGAATTTGCCTTAGTCTTCA+TGG | + | chr3.4:90408679-90408698 | MS.gene012908:CDS | 35.0% |
| ! | ATGGTTTAGCTGACTTAGTT+GGG | + | chr3.4:90410172-90410191 | MS.gene012908:intron | 35.0% |
| ! | CAAGATTTTGCAAGAAGTGA+TGG | + | chr3.4:90408480-90408499 | MS.gene012908:CDS | 35.0% |
| ! | CAATCTGAGTCTTTTGATCT+TGG | - | chr3.4:90408624-90408643 | None:intergenic | 35.0% |
| ! | CTTTTGTCACAGAAATTCCT+GGG | + | chr3.4:90409544-90409563 | MS.gene012908:intron | 35.0% |
| ! | GAACAGTTTATGGACTATAG+AGG | + | chr3.4:90410924-90410943 | MS.gene012908:CDS | 35.0% |
| ! | GAATTTGCCTTAGTCTTCAT+GGG | + | chr3.4:90408680-90408699 | MS.gene012908:CDS | 35.0% |
| ! | TAATCACATGTGTGAGTTGA+TGG | + | chr3.4:90408549-90408568 | MS.gene012908:CDS | 35.0% |
| ! | TTTCGATTTGAGCCATGAAA+GGG | - | chr3.4:90407928-90407947 | None:intergenic | 35.0% |
| ! | TTTTCATTGCAATGGAAGCT+CGG | + | chr3.4:90410964-90410983 | MS.gene012908:CDS | 35.0% |
| !! | AAAGGTGCTTGATAAGTATG+AGG | + | chr3.4:90410673-90410692 | MS.gene012908:CDS | 35.0% |
| !! | CATTGGTTTGATGAATTTCG+TGG | + | chr3.4:90408421-90408440 | MS.gene012908:CDS | 35.0% |
| !! | CTTGTTCTAGGGTTTGATTA+GGG | - | chr3.4:90407952-90407971 | None:intergenic | 35.0% |
| !! | GTATTGAAATCAGGTTGACT+AGG | - | chr3.4:90408124-90408143 | None:intergenic | 35.0% |
| !! | GTTTTCTTGTTGTGTGTTAC+TGG | + | chr3.4:90410871-90410890 | MS.gene012908:CDS | 35.0% |
| !! | TGTAGTTTGTCACTTTCTCT+TGG | + | chr3.4:90410435-90410454 | MS.gene012908:intron | 35.0% |
| !! | TTTATTTGTTGTGGTCCTGT+TGG | + | chr3.4:90410363-90410382 | MS.gene012908:intron | 35.0% |
| !! | TTTTCGATTTGAGCCATGAA+AGG | - | chr3.4:90407929-90407948 | None:intergenic | 35.0% |
| !!! | AGGGGTTTCATACTTTTTCT+TGG | + | chr3.4:90408519-90408538 | MS.gene012908:CDS | 35.0% |
| !!! | TGTTACGGGTTTGTTTTTAC+AGG | + | chr3.4:90409712-90409731 | MS.gene012908:intron | 35.0% |
| AATTAGACCTCTTTGCTCTC+TGG | - | chr3.4:90408856-90408875 | None:intergenic | 40.0% | |
| ACATCATAAGAACTCAACCG+CGG | - | chr3.4:90408208-90408227 | None:intergenic | 40.0% | |
| AGACAATACAATAGCTCCAG+GGG | - | chr3.4:90408892-90408911 | None:intergenic | 40.0% | |
| ATACAAATTGCTGCTGAAGC+TGG | - | chr3.4:90409878-90409897 | None:intergenic | 40.0% | |
| ATCGACAGAATCGTTAGGAA+TGG | - | chr3.4:90407798-90407817 | None:intergenic | 40.0% | |
| CCATAACCAAAACCCTTTCA+TGG | + | chr3.4:90407913-90407932 | MS.gene012908:CDS | 40.0% | |
| CCTAACGATTCTGTCGATAA+CGG | + | chr3.4:90407800-90407819 | MS.gene012908:CDS | 40.0% | |
| CGGGTTAAGGTCTTAAATTG+AGG | + | chr3.4:90409150-90409169 | MS.gene012908:intron | 40.0% | |
| CTGAAAATACCAACAGTCTC+AGG | + | chr3.4:90409840-90409859 | MS.gene012908:CDS | 40.0% | |
| CTGCAATCCTGCTTAATATC+CGG | - | chr3.4:90409190-90409209 | None:intergenic | 40.0% | |
| GCAAGAAGTGATGGCAAATT+TGG | + | chr3.4:90408489-90408508 | MS.gene012908:CDS | 40.0% | |
| GCATACTTCATTGTGCTAGA+AGG | + | chr3.4:90410519-90410538 | MS.gene012908:intron | 40.0% | |
| GGATATTAATGGTCATCGTG+TGG | + | chr3.4:90408914-90408933 | MS.gene012908:CDS | 40.0% | |
| GTTTGATGAATTTCGTGGGA+GGG | + | chr3.4:90408426-90408445 | MS.gene012908:CDS | 40.0% | |
| TATTGTGTTAGCCATGCTCA+AGG | + | chr3.4:90409628-90409647 | MS.gene012908:CDS | 40.0% | |
| TCGTTCTGTTGAGAAACTGT+TGG | + | chr3.4:90408818-90408837 | MS.gene012908:CDS | 40.0% | |
| TGAATGGGATGAATGCACAT+TGG | + | chr3.4:90408404-90408423 | MS.gene012908:CDS | 40.0% | |
| TGCAATCCTGCTTAATATCC+GGG | - | chr3.4:90409189-90409208 | None:intergenic | 40.0% | |
| TTAAAAGGGTTACTCCTAGC+AGG | - | chr3.4:90410739-90410758 | None:intergenic | 40.0% | |
| TTACCTCAGTATCAGCATGT+GGG | - | chr3.4:90408962-90408981 | None:intergenic | 40.0% | |
| TTAGCTTATGGTAGAGGTAG+AGG | + | chr3.4:90408166-90408185 | MS.gene012908:CDS | 40.0% | |
| TTGCCAAAGAGTGAAATGCA+TGG | + | chr3.4:90410153-90410172 | MS.gene012908:intron | 40.0% | |
| TTTACCTCAGTATCAGCATG+TGG | - | chr3.4:90408963-90408982 | None:intergenic | 40.0% | |
| TTTCATTGCAATGGAAGCTC+GGG | + | chr3.4:90410965-90410984 | MS.gene012908:CDS | 40.0% | |
| ! | CATGGTTTAGCTGACTTAGT+TGG | + | chr3.4:90410171-90410190 | MS.gene012908:intron | 40.0% |
| ! | GACGAGAAAAAGCTTGTTCT+AGG | - | chr3.4:90407964-90407983 | None:intergenic | 40.0% |
| ! | GGATGGAAGGATTTTGCTTT+TGG | + | chr3.4:90410902-90410921 | MS.gene012908:CDS | 40.0% |
| ! | GGTTGATCCTATTGGTTATG+AGG | + | chr3.4:90408570-90408589 | MS.gene012908:CDS | 40.0% |
| ! | GTTTTTGCATGATTCAGGAG+TGG | + | chr3.4:90409938-90409957 | MS.gene012908:CDS | 40.0% |
| ! | TAAGATTTTGTCGGGGTTCT+CGG | + | chr3.4:90409130-90409149 | MS.gene012908:intron | 40.0% |
| ! | TGCTAGAAGGCTTGGTTTAT+TGG | + | chr3.4:90410532-90410551 | MS.gene012908:intron | 40.0% |
| ! | TTTGAGCCATGAAAGGGTTT+TGG | - | chr3.4:90407922-90407941 | None:intergenic | 40.0% |
| !! | CGTAGCTGTTTTCATTGCAA+TGG | + | chr3.4:90410956-90410975 | MS.gene012908:CDS | 40.0% |
| !! | GAGTTGATGGTTGATCCTAT+TGG | + | chr3.4:90408562-90408581 | MS.gene012908:CDS | 40.0% |
| !! | GCTTGTTCTAGGGTTTGATT+AGG | - | chr3.4:90407953-90407972 | None:intergenic | 40.0% |
| !! | GTAAGGAGCCTTGTTACATT+AGG | - | chr3.4:90410002-90410021 | None:intergenic | 40.0% |
| !!! | ATGTTTTTCTGAGACCCTCT+AGG | + | chr3.4:90409253-90409272 | MS.gene012908:intron | 40.0% |
| !!! | CCATGAAAGGGTTTTGGTTA+TGG | - | chr3.4:90407916-90407935 | None:intergenic | 40.0% |
| AGCATGGCATGATTCCTAGA+GGG | - | chr3.4:90409270-90409289 | None:intergenic | 45.0% | |
| ATACTGCAGCACACAACATC+CGG | - | chr3.4:90409611-90409630 | None:intergenic | 45.0% | |
| ATGAATCCTCTGTGCCAACT+TGG | + | chr3.4:90408347-90408366 | MS.gene012908:CDS | 45.0% | |
| CACAATCCCGGATATTAAGC+AGG | + | chr3.4:90409180-90409199 | MS.gene012908:intron | 45.0% | |
| CACTGTGATCGAGGTGATAA+CGG | - | chr3.4:90407833-90407852 | None:intergenic | 45.0% | |
| CAGGATTTGAATGCAACTGC+TGG | + | chr3.4:90409207-90409226 | MS.gene012908:intron | 45.0% | |
| CCGTTATCGACAGAATCGTT+AGG | - | chr3.4:90407803-90407822 | None:intergenic | 45.0% | |
| CGGATATTAAGCAGGATTGC+AGG | + | chr3.4:90409188-90409207 | MS.gene012908:intron | 45.0% | |
| CGTTGGCAAAGGATACACAT+GGG | + | chr3.4:90408455-90408474 | MS.gene012908:CDS | 45.0% | |
| CTTCATTGTGCTAGAAGGCT+TGG | + | chr3.4:90410524-90410543 | MS.gene012908:intron | 45.0% | |
| GAGGGTTTATTCGTTGGCAA+AGG | + | chr3.4:90408444-90408463 | MS.gene012908:CDS | 45.0% | |
| GATGCATGATACTTACGTGC+AGG | - | chr3.4:90410325-90410344 | None:intergenic | 45.0% | |
| GCAGCATCATTAACCCAAGT+TGG | - | chr3.4:90408364-90408383 | None:intergenic | 45.0% | |
| GGTTTGATGAATTTCGTGGG+AGG | + | chr3.4:90408425-90408444 | MS.gene012908:CDS | 45.0% | |
| TAACTCAACCACTGTGATCG+AGG | - | chr3.4:90407842-90407861 | None:intergenic | 45.0% | |
| TAAGAATGCCTTGGAGGAAC+TGG | + | chr3.4:90410607-90410626 | MS.gene012908:CDS | 45.0% | |
| TAGCATGGCATGATTCCTAG+AGG | - | chr3.4:90409271-90409290 | None:intergenic | 45.0% | |
| TCGTTGGCAAAGGATACACA+TGG | + | chr3.4:90408454-90408473 | MS.gene012908:CDS | 45.0% | |
| TCTTAGTTGCTCCTTGAGCA+TGG | - | chr3.4:90409642-90409661 | None:intergenic | 45.0% | |
| TGAATCCTCTGTGCCAACTT+GGG | + | chr3.4:90408348-90408367 | MS.gene012908:CDS | 45.0% | |
| TGTTACTGGCATGGAATGGA+TGG | + | chr3.4:90410885-90410904 | MS.gene012908:CDS | 45.0% | |
| TTCTGATAAGCTGAGCACCA+TGG | - | chr3.4:90408663-90408682 | None:intergenic | 45.0% | |
| TTTCCCACATGCTGATACTG+AGG | + | chr3.4:90408956-90408975 | MS.gene012908:CDS | 45.0% | |
| ! | AAGATTTTGTCGGGGTTCTC+GGG | + | chr3.4:90409131-90409150 | MS.gene012908:intron | 45.0% |
| ! | ATTAACCCAAGTTGGCACAG+AGG | - | chr3.4:90408356-90408375 | None:intergenic | 45.0% |
| ! | ATTATGTCAGCTTTGACCCC+TGG | + | chr3.4:90408873-90408892 | MS.gene012908:CDS | 45.0% |
| ! | CTTGTTGTGTGTTACTGGCA+TGG | + | chr3.4:90410876-90410895 | MS.gene012908:CDS | 45.0% |
| ! | TGTGTGTTACTGGCATGGAA+TGG | + | chr3.4:90410881-90410900 | MS.gene012908:CDS | 45.0% |
| !! | CATTTGAATGGGGGTATTGG+TGG | + | chr3.4:90408247-90408266 | MS.gene012908:intron | 45.0% |
| ACTGGCATGGAATGGATGGA+AGG | + | chr3.4:90410889-90410908 | MS.gene012908:CDS | 50.0% | |
| AGGCTCCTTACGGATCCTTA+TGG | + | chr3.4:90410011-90410030 | MS.gene012908:CDS | 50.0% | |
| CAAATTGCTGCTGAAGCTGG+TGG | - | chr3.4:90409875-90409894 | None:intergenic | 50.0% | |
| CGTTATCACCTCGATCACAG+TGG | + | chr3.4:90407831-90407850 | MS.gene012908:CDS | 50.0% | |
| GCGGTATGCTTGCTCTTGTT+TGG | + | chr3.4:90409383-90409402 | MS.gene012908:intron | 50.0% | |
| GTTACCACCAGAGAGCAAAG+AGG | + | chr3.4:90408846-90408865 | MS.gene012908:CDS | 50.0% | |
| GTTCTGTTGGTCACACACCA+TGG | + | chr3.4:90408643-90408662 | MS.gene012908:CDS | 50.0% | |
| TAGACCTCTTTGCTCTCTGG+TGG | - | chr3.4:90408853-90408872 | None:intergenic | 50.0% | |
| TCGTGGGAGGGTTTATTCGT+TGG | + | chr3.4:90408438-90408457 | MS.gene012908:CDS | 50.0% | |
| TGTAGGTTGCCTGAGACTGT+TGG | - | chr3.4:90409852-90409871 | None:intergenic | 50.0% | |
| ! | ATGGCAAATTTGGGGCCTGA+AGG | + | chr3.4:90408499-90408518 | MS.gene012908:CDS | 50.0% |
| ! | TGAGGCTGCTTTCACAATCC+CGG | + | chr3.4:90409168-90409187 | MS.gene012908:intron | 50.0% |
| ! | TGGCAAATTTGGGGCCTGAA+GGG | + | chr3.4:90408500-90408519 | MS.gene012908:CDS | 50.0% |
| !! | GGTATTGGTGGTGGTGGTTA+TGG | + | chr3.4:90408259-90408278 | MS.gene012908:intron | 50.0% |
| !! | GGTGGTGGTGGTTATGGTTA+TGG | + | chr3.4:90408265-90408284 | MS.gene012908:intron | 50.0% |
| !! | TTGAATGGGGGTATTGGTGG+TGG | + | chr3.4:90408250-90408269 | MS.gene012908:intron | 50.0% |
| ATTGCAATGGAAGCTCGGGC+TGG | + | chr3.4:90410969-90410988 | MS.gene012908:CDS | 55.0% | |
| GCTGGCACTGTGCAGATTGT+GGG | + | chr3.4:90409225-90409244 | MS.gene012908:intron | 55.0% | |
| TAAGAACTCAACCGCGGCGA+CGG | - | chr3.4:90408202-90408221 | None:intergenic | 55.0% | |
| TGCTGGCACTGTGCAGATTG+TGG | + | chr3.4:90409224-90409243 | MS.gene012908:intron | 55.0% | |
| TGCTTCGACCAGTTCCTCCA+AGG | - | chr3.4:90410618-90410637 | None:intergenic | 55.0% | |
| TTGTCGGGGTTCTCGGGTTA+AGG | + | chr3.4:90409137-90409156 | MS.gene012908:intron | 55.0% | |
| ! | GGCAAATTTGGGGCCTGAAG+GGG | + | chr3.4:90408501-90408520 | MS.gene012908:CDS | 55.0% |
| !! | AATGGGGGTATTGGTGGTGG+TGG | + | chr3.4:90408253-90408272 | MS.gene012908:intron | 55.0% |
| ! | GCTGCTGAAGCTGGTGGTGT+AGG | - | chr3.4:90409869-90409888 | None:intergenic | 60.0% |
| GAACTCAACCGCGGCGACGG+CGG | - | chr3.4:90408199-90408218 | None:intergenic | 70.0% | |
| GAATTTCGCCGCCGTCGCCG+CGG | + | chr3.4:90408188-90408207 | MS.gene012908:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 90407779 | 90411022 | 90407779 | ID=MS.gene012908 |
| chr3.4 | mRNA | 90407779 | 90411022 | 90407779 | ID=MS.gene012908.t1;Parent=MS.gene012908 |
| chr3.4 | exon | 90407779 | 90408239 | 90407779 | ID=MS.gene012908.t1.exon1;Parent=MS.gene012908.t1 |
| chr3.4 | CDS | 90407779 | 90408239 | 90407779 | ID=cds.MS.gene012908.t1;Parent=MS.gene012908.t1 |
| chr3.4 | exon | 90408345 | 90408701 | 90408345 | ID=MS.gene012908.t1.exon2;Parent=MS.gene012908.t1 |
| chr3.4 | CDS | 90408345 | 90408701 | 90408345 | ID=cds.MS.gene012908.t1;Parent=MS.gene012908.t1 |
| chr3.4 | exon | 90408815 | 90408977 | 90408815 | ID=MS.gene012908.t1.exon3;Parent=MS.gene012908.t1 |
| chr3.4 | CDS | 90408815 | 90408977 | 90408815 | ID=cds.MS.gene012908.t1;Parent=MS.gene012908.t1 |
| chr3.4 | exon | 90409556 | 90409719 | 90409556 | ID=MS.gene012908.t1.exon4;Parent=MS.gene012908.t1 |
| chr3.4 | CDS | 90409556 | 90409719 | 90409556 | ID=cds.MS.gene012908.t1;Parent=MS.gene012908.t1 |
| chr3.4 | exon | 90409812 | 90410070 | 90409812 | ID=MS.gene012908.t1.exon5;Parent=MS.gene012908.t1 |
| chr3.4 | CDS | 90409812 | 90410070 | 90409812 | ID=cds.MS.gene012908.t1;Parent=MS.gene012908.t1 |
| chr3.4 | exon | 90410593 | 90410695 | 90410593 | ID=MS.gene012908.t1.exon6;Parent=MS.gene012908.t1 |
| chr3.4 | CDS | 90410593 | 90410695 | 90410593 | ID=cds.MS.gene012908.t1;Parent=MS.gene012908.t1 |
| chr3.4 | exon | 90410862 | 90411022 | 90410862 | ID=MS.gene012908.t1.exon7;Parent=MS.gene012908.t1 |
| chr3.4 | CDS | 90410862 | 90411022 | 90410862 | ID=cds.MS.gene012908.t1;Parent=MS.gene012908.t1 |
| Gene Sequence |
| Protein sequence |
