AlfalfaGEDB | MS.gene056242

M. sativa cultivar XinJiangDaYe / MS.gene056242

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF13041.9 PF17177.7

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056242.t1	XP_024627797.1	94.2	173	10	0	1	173	4	176	5.40E-87	332

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056242.t1	Q9FKR3	52.9	189	83	4	1	183	1	189	4.8e-44	180.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056242.t1	G7LG30	94.2	173	10	0	1	173	4	176	3.9e-87	332.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene056242	MS.gene059625	0.825471	4.60E-54	-1.69E-46
MS.gene056242	MS.gene066335	0.800105	1.68E-48	-1.69E-46
MS.gene056242	MS.gene27059	0.8062	9.23E-50	-1.69E-46
MS.gene056242	MS.gene27516	0.800302	1.54E-48	-1.69E-46
MS.gene056242	MS.gene49876	0.800993	1.11E-48	-1.69E-46
MS.gene056242	MS.gene87673	0.802653	5.07E-49	-1.69E-46
MS.gene056242	MS.gene88489	0.810845	9.41E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000715	MS.gene056242	PPI
MS.gene003502	MS.gene056242	PPI
MS.gene006820	MS.gene056242	PPI
MS.gene012908	MS.gene056242	PPI
MS.gene020386	MS.gene056242	PPI
MS.gene02707	MS.gene056242	PPI
MS.gene029278	MS.gene056242	PPI
MS.gene037288	MS.gene056242	PPI
MS.gene038085	MS.gene056242	PPI
MS.gene040675	MS.gene056242	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056242.t1	MTR_8g039270	96.303	541	20	0	1	541	4	544	0.0	1095
MS.gene056242.t1	MTR_5g077930	29.541	545	369	5	28	557	50	594	4.88e-82	273
MS.gene056242.t1	MTR_4g074390	30.093	535	364	4	12	541	20	549	4.42e-80	263
MS.gene056242.t1	MTR_4g074390	31.746	378	247	4	118	490	195	566	1.14e-56	200
MS.gene056242.t1	MTR_4g074390	32.877	219	145	1	133	349	349	567	2.04e-32	132
MS.gene056242.t1	MTR_4g108060	29.533	535	367	4	12	541	20	549	2.93e-79	261
MS.gene056242.t1	MTR_4g108060	30.806	422	268	5	74	490	164	566	3.39e-59	207
MS.gene056242.t1	MTR_4g108060	34.247	219	142	1	133	349	349	567	5.55e-34	136
MS.gene056242.t1	MTR_1g033960	29.077	509	349	5	46	547	41	544	4.86e-76	256
MS.gene056242.t1	MTR_1g033960	28.169	426	282	6	115	536	250	655	3.72e-54	196

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056242.t1	AT5G38730	57.664	548	225	5	1	541	1	548	0.0	662
MS.gene056242.t1	AT5G38730	22.034	413	226	9	69	392	166	571	9.58e-18	87.0
MS.gene056242.t1	AT1G09680	28.150	508	349	5	30	527	71	572	1.20e-73	246
MS.gene056242.t1	AT1G09680	30.164	305	206	3	262	561	235	537	1.65e-45	170
MS.gene056242.t1	AT1G09680	23.077	169	130	0	373	541	208	376	1.57e-12	70.9
MS.gene056242.t1	AT5G39710	28.515	505	352	5	48	547	55	555	6.10e-70	239
MS.gene056242.t1	AT5G39710	25.767	489	276	4	137	538	250	738	1.77e-50	186
MS.gene056242.t1	AT5G39710	24.634	410	250	3	124	474	335	744	9.33e-38	149
MS.gene056242.t1	AT5G39710	25.497	302	206	3	123	407	448	747	1.90e-22	102
MS.gene056242.t1	AT1G05670	29.273	550	336	10	30	536	48	587	4.96e-68	234

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Find 109 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGAGAATTAACTTC+CGG	0.514800	8.1:-64880659	None:intergenic
AAAACTAAGATGTTAGAAGC+TGG	0.510783	8.1:+64881469	MS.gene056242:CDS
AAACATGAGAATTAACTTCC+GGG	0.442431	8.1:-64880658	None:intergenic
AAGTTATTATATCATATGGA+AGG	0.550124	8.1:+64881778	MS.gene056242:CDS
AATCAGTGCTTTATATGTAA+AGG	0.495574	8.1:-64881506	None:intergenic
AATTATAAGTAACAACACCA+GGG	0.736402	8.1:-64881288	None:intergenic
ACAAACTCAACCTGTATCAT+TGG	0.441944	8.1:-64882848	None:intergenic
ACAGCAGGTGCTTGATAAAA+TGG	0.279205	8.1:+64880574	MS.gene056242:CDS
ACAGTACAAGCATGCAAATG+TGG	0.602089	8.1:-64880770	None:intergenic
ACATATAAAGCACTGATTCA+TGG	0.331781	8.1:+64881511	MS.gene056242:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTAAGATGTTAGAAGC+TGG	+	chr8.1:64881469-64881488	MS.gene056242:CDS	30.0%
AAACATGAGAATTAACTTCC+GGG	-	chr8.1:64880661-64880680	None:intergenic	30.0%
ACCTGTTTATGCATTATTTG+AGG	+	chr8.1:64882233-64882252	MS.gene056242:intron	30.0%
ATGAACTCTTTGTTGAAAGA+TGG	+	chr8.1:64880797-64880816	MS.gene056242:CDS	30.0%
ATTATATCATATGGAAGGGA+AGG	+	chr8.1:64881783-64881802	MS.gene056242:CDS	30.0%
ATTGAACCCATTTGAAGAAA+TGG	-	chr8.1:64880472-64880491	None:intergenic	30.0%
CAATTATCGTAAAGGGTAAT+TGG	+	chr8.1:64880342-64880361	MS.gene056242:CDS	30.0%
CATACTAAACAATAGTTCCT+TGG	-	chr8.1:64881566-64881585	None:intergenic	30.0%
CATCTTCCATTTCTTCAAAT+GGG	+	chr8.1:64880463-64880482	MS.gene056242:CDS	30.0%
GAAAGATTGGAATACTATCT+GGG	+	chr8.1:64882301-64882320	MS.gene056242:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	64880293	64882895	64880293	ID=MS.gene056242
chr8.1	mRNA	64880293	64882895	64880293	ID=MS.gene056242.t1;Parent=MS.gene056242
chr8.1	exon	64880293	64881911	64880293	ID=MS.gene056242.t1.exon1;Parent=MS.gene056242.t1
chr8.1	CDS	64880293	64881911	64880293	ID=cds.MS.gene056242.t1;Parent=MS.gene056242.t1
chr8.1	exon	64882796	64882895	64882796	ID=MS.gene056242.t1.exon2;Parent=MS.gene056242.t1
chr8.1	CDS	64882796	64882895	64882796	ID=cds.MS.gene056242.t1;Parent=MS.gene056242.t1

Gene Sequence

>MS.gene056242

ATGGTTTCTATTGAAACTTTCAATAAGCACTTAATTGAAAGTGTATGTGCAATTATCGTAAAGGGTAATTGGAACAATCTCTTAAAACCCAAAACAGCTTCTACAGTCACTTCCACCACCATTCACCAAGTTATCTTGCACCTCACGCAACACCGTTACGAACCCTTTTTCATCTTCCATTTCTTCAAATGGGTTCAATCCATTCCACATTACACTCATTCCTTACAATCTTCATGGTCCATGATTCACATACTCACCAAACACCGCCATTTCAAAACTGCACAGCAGGTGCTTGATAAAATGGCGCAAAGGGAAATACTTTCATCGCCTTCGGTTTTGAGTTCTTTGGTGCGGATTCATGATGACCCGGAAGTTAATTCTCATGTTTTGAGCTGGATTGTGATACATTATGCGAAATCGAAGATGACCCATGATGCGGTTCAGGTTTTTGAGCAGATGAGTTTGTGTAATTTGAAGCCACATTTGCATGCTTGTACTGTGCTTATGAACTCTTTGTTGAAAGATGGGGTTACTAGTATGGTGTGGAAGGTTTATAAGAGAATGATTCAAGATGGGGTTGTTCCGAATATTTATGTTTATAATTGTTTAATTCATGCTTGTTCGATATCGAGAGATGTGGAGAGGGCGGAGTTTATATTGAATGAGATGGAAGTGAAGGGTGTGGTTCCTGATATTTTTACGTACAATACTTTGATAGCTTTGTATTGCAAAAAGGGTATGCATTATGAGGCTTTATCGGTCCAGGATAAAATGGAAAGAGAGGGAATAAATCTTGATATTGTTAGTTATAATTCTCTTATTTATGGATTTTGCAAAGAAGGGAAAATGAGGGAAGCTATGAGGATCTTTGGCGAAATCAAAGACGCCATTCCGAATCATGTCACATATACTACATTGATTGATGGATATTGTAAAGCGAATGAATTTGAGGAAGCTCTGAGGTTGCGTGAAATGATGGTGGCTAAGGGATTGTACCCTGGTGTTGTTACTTATAATTCAATTTTGCGCAAGCTGTGTTCAGATGGCAGGATTAGGGATGCAAACAAACTCTTGAACGAAATGAGTGAAAGAAAAGTCCAAGCTGACAGCATCACATGTAACACACTGATAAATGCTTATTGCAAGATAGGAGATTTGAATTCTGCTTTGAAATTTAAAACTAAGATGTTAGAAGCTGGACTAACGCCCAACTCCTTTACATATAAAGCACTGATTCATGGATTCTGCAAAACTAGTGAGCTCGAAAGTGCCAAGGAACTATTGTTTAGTATGCTTGATGCCGGATTTTCTCCAAATTATCGCACTTATTCGTGGATTGTAGATAGCTATTGCAAGAAAGACAATACTGATGCAGTTCTAGCACTGCCAGATGAGTTTTTGAGTAAAGGTTTTTGTCTTAATATTTCAGTCTACAGGGCATTGATAAGAAGGTTATGCAAGATAGAGAAGATTGAATGTGCTGAAAAGTTATTATATCATATGGAAGGGAAGGGTATTTCAGGTGATAGTGTTATCTACACTAGTCTCGCTTTTTCTTACTGGAAATCAGGGAACACAAATGCTGCCTCAGATATGTTAGAAGAGATGGCTAGGAGAAGGTTGATGATCACTGTCAAAATATATAGATGCTTTAGTGCTCCTGATGCTAGTCAAAACAAAGTGTCACAGATGTTCTGGGATCATGTGGTGGAAAGGGGTCTGATGTCAAGAAATACAATGTATAAACTACAGCAAATGCTGATGTGATATGATGATGATGATGATGATGATTTTGGTTATTCAAAAGTAGCTTTTTCCTGTAATTGTTGGCAATTTATTTCTTCTGGTTACCAGAGGGTATTCCTTCATGTTTTCACTTGTCATGTAGGGACACTTTTCTAACCTTGTATGTTAGCTATCATAAATCATATTATTTTGAAACCTGTTTATGCATTATTTGAGGCAACTGTCCATTGCTTAAACACCCTTTTTTTGGAAAACCAAATGGGAAAGATTGGAATACTATCTGGGCTTACAAATTTCCAAACTCATTATATTTATTCATGTAAAAGTAAGGATAGACTATCTGTGTGGCTCTGTCAAAAAATTAAACAAAGTTGCTTTCTGCTTTGTTATAAATCTCTGCTAAAATGGAACAAATGCTTGGCAGTTGGGATGTGATGGAATATATAGCTGCTTTTTGTTTTCCGAAAAATTGATGGTCTGTTTACGTGGTAACATAATGTTTAGATAGTATATCCAAACAAAAACAATTCCCACTATTTTCTGTTATAAAATGTTGATAAAACAGTTATTTCTTAGTTCTCTCATTGGACATTGTGAACTTCATTTTCAAAATAATTACATGTAAATTTTTAGCTAATGCTTTGTCCATGCTTGTTTTAAATCATTTGATTAGAACTTGGATATTTTATCTGGTAGGTTTTGCTTATTTGGATTGATTTTCAAATGATTGTGATGAGAATGTGTGGGGTCTTGCAAGGTTATATTGGATCCCTTCTGTGGAAGTCAACATAAACCAGCTGTGTGCAATACCAATGATACAGGTTGAGTTTGTTTCTGTCTCTTCTAAGCCTTGCTGA

Protein sequence

>MS.gene056242.t1

MVSIETFNKHLIESVCAIIVKGNWNNLLKPKTASTVTSTTIHQVILHLTQHRYEPFFIFHFFKWVQSIPHYTHSLQSSWSMIHILTKHRHFKTAQQVLDKMAQREILSSPSVLSSLVRIHDDPEVNSHVLSWIVIHYAKSKMTHDAVQVFEQMSLCNLKPHLHACTVLMNSLLKDGVTSMVWKVYKRMIQDGVVPNIYVYNCLIHACSISRDVERAEFILNEMEVKGVVPDIFTYNTLIALYCKKGMHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRIFGEIKDAIPNHVTYTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLNEMSERKVQADSITCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSELESAKELLFSMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFCLNISVYRALIRRLCKIEKIECAEKLLYHMEGKGISGDSVIYTSLAFSYWKSGNTNAASDMLEEMARRRLYWIPSVEVNINQLCAIPMIQVEFVSVSSKPC