AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014159


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014159.t1 MTR_7g092380 98.909 275 3 0 1 275 1 275 0.0 556
MS.gene014159.t1 MTR_1g052110 76.426 263 61 1 10 271 26 288 1.17e-139 395
MS.gene014159.t1 MTR_3g027580 56.716 67 29 0 21 87 88 154 1.05e-15 77.0
MS.gene014159.t1 MTR_7g109340 50.746 67 33 0 21 87 25 91 5.15e-15 74.3
MS.gene014159.t1 MTR_7g112360 52.308 65 27 2 24 84 18 82 1.46e-14 68.9
MS.gene014159.t1 MTR_2g436560 44.898 98 47 4 24 119 106 198 2.17e-14 72.8
MS.gene014159.t1 MTR_1g110310 43.750 96 47 3 24 112 18 113 3.40e-14 72.4
MS.gene014159.t1 MTR_7g112360 52.308 65 27 2 24 84 18 82 4.69e-14 68.9
MS.gene014159.t1 MTR_4g023470 53.731 67 31 0 21 87 85 151 6.02e-14 71.6
MS.gene014159.t1 MTR_8g022310 37.736 106 56 3 16 115 4 105 8.16e-14 68.9
MS.gene014159.t1 MTR_8g022310 44.048 84 40 2 16 93 4 86 8.63e-14 68.9
MS.gene014159.t1 MTR_8g022310 44.048 84 40 2 16 93 4 86 1.09e-13 68.9
MS.gene014159.t1 MTR_8g022310 44.048 84 40 2 16 93 4 86 2.39e-13 68.2
MS.gene014159.t1 MTR_4g078850 47.692 65 33 1 24 87 6 70 1.55e-12 67.0
MS.gene014159.t1 MTR_7g069480 53.125 64 29 1 24 87 29 91 1.84e-12 67.4
MS.gene014159.t1 MTR_8g037810 51.562 64 31 0 24 87 8 71 2.30e-12 66.6
MS.gene014159.t1 MTR_2g014470 42.105 76 40 2 24 98 6 78 2.62e-12 66.2
MS.gene014159.t1 MTR_3g108020 43.077 65 36 1 24 87 6 70 3.47e-12 65.9
MS.gene014159.t1 MTR_5g004570 50.000 64 32 0 24 87 8 71 4.05e-12 65.1
MS.gene014159.t1 MTR_2g436580 34.783 115 64 3 24 136 112 217 4.31e-12 64.7
MS.gene014159.t1 MTR_5g035770 36.111 108 62 2 12 112 15 122 4.45e-12 65.9
MS.gene014159.t1 MTR_2g014480 46.154 65 34 1 24 87 6 70 8.21e-12 65.1
MS.gene014159.t1 MTR_2g090705 44.595 74 37 2 24 96 6 76 1.01e-11 64.7
MS.gene014159.t1 MTR_4g015840 44.615 65 35 1 24 87 6 70 2.46e-11 63.5
MS.gene014159.t1 MTR_5g065160 45.455 66 36 0 20 85 81 146 6.91e-11 62.4
MS.gene014159.t1 MTR_5g065160 45.455 66 36 0 20 85 80 145 7.16e-11 62.4
MS.gene014159.t1 MTR_3g087030 46.875 64 33 1 24 87 84 146 8.12e-11 62.4
MS.gene014159.t1 MTR_8g006430 33.133 166 91 6 1 158 1 154 8.22e-11 62.4
MS.gene014159.t1 MTR_5g065160 45.455 66 36 0 20 85 74 139 9.24e-11 62.4
MS.gene014159.t1 MTR_5g065160 45.455 66 36 0 20 85 81 146 9.85e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014159.t1 AT3G12170 73.251 243 64 1 20 261 9 251 1.01e-129 369
MS.gene014159.t1 AT3G12170 73.251 243 64 1 20 261 45 287 9.74e-129 367
MS.gene014159.t1 AT5G06910 64.894 282 87 4 1 270 1 282 4.67e-118 340
MS.gene014159.t1 AT5G48030 58.209 67 28 0 21 87 93 159 1.27e-15 76.6
MS.gene014159.t1 AT1G59980 40.625 96 50 2 24 112 25 120 5.67e-15 74.3
MS.gene014159.t1 AT1G59980 40.625 96 50 2 24 112 25 120 6.01e-15 74.7
MS.gene014159.t1 AT1G56300 47.826 69 32 2 20 84 11 79 1.39e-14 70.1
MS.gene014159.t1 AT1G56300 47.826 69 32 2 20 84 11 79 1.46e-14 68.9
MS.gene014159.t1 AT5G03160 50.685 73 35 1 20 91 368 440 2.42e-14 73.2
MS.gene014159.t1 AT3G14200 49.351 77 36 1 20 93 10 86 3.20e-14 70.9
MS.gene014159.t1 AT3G62600 50.746 67 33 0 21 87 25 91 4.40e-14 71.6
MS.gene014159.t1 AT4G39150 53.125 64 30 0 24 87 8 71 4.72e-14 71.6
MS.gene014159.t1 AT4G39150 53.125 64 30 0 24 87 8 71 4.72e-14 71.6
MS.gene014159.t1 AT4G39150 53.125 64 30 0 24 87 8 71 4.72e-14 71.6
MS.gene014159.t1 AT5G01390 46.970 66 34 1 23 87 5 70 2.56e-13 68.2
MS.gene014159.t1 AT2G21510 50.000 64 32 0 24 87 8 71 3.35e-13 69.3
MS.gene014159.t1 AT2G21510 50.000 64 32 0 24 87 8 71 3.35e-13 69.3
MS.gene014159.t1 AT2G21510 50.000 64 32 0 24 87 8 71 3.40e-13 68.9
MS.gene014159.t1 AT2G21510 50.000 64 32 0 24 87 8 71 3.40e-13 68.9
MS.gene014159.t1 AT5G01390 46.970 66 34 1 23 87 5 70 3.44e-13 67.8
MS.gene014159.t1 AT2G21510 50.000 64 32 0 24 87 8 71 4.10e-13 68.6
MS.gene014159.t1 AT1G68370 42.708 96 48 3 24 112 19 114 4.29e-13 68.9
MS.gene014159.t1 AT5G01390 46.970 66 34 1 23 87 5 70 4.99e-13 68.2
MS.gene014159.t1 AT5G49060 48.611 72 32 2 24 93 101 169 5.01e-13 68.6
MS.gene014159.t1 AT5G49060 48.611 72 32 2 24 93 101 169 5.01e-13 68.6
MS.gene014159.t1 AT5G01390 46.970 66 34 1 23 87 5 70 7.52e-13 68.2
MS.gene014159.t1 AT4G28480 41.975 81 43 2 24 103 6 83 1.32e-12 67.0
MS.gene014159.t1 AT4G28480 41.975 81 43 2 24 103 6 83 1.56e-12 67.0
MS.gene014159.t1 AT1G77020 51.562 64 31 0 24 87 8 71 1.87e-12 67.0
MS.gene014159.t1 AT1G21080 37.931 87 51 1 23 109 7 90 2.18e-12 67.0
MS.gene014159.t1 AT1G21080 37.931 87 51 1 23 109 7 90 2.21e-12 67.0
MS.gene014159.t1 AT3G08910 46.154 65 34 1 24 87 6 70 3.36e-12 65.9
MS.gene014159.t1 AT1G76700 48.438 64 33 0 24 87 8 71 4.71e-12 65.9
MS.gene014159.t1 AT5G16650 40.789 76 45 0 13 88 2 77 7.78e-12 61.6
MS.gene014159.t1 AT2G20560 36.792 106 61 3 24 128 6 106 9.54e-12 64.7
MS.gene014159.t1 AT5G25530 44.615 65 35 1 24 87 6 70 1.11e-11 64.7
MS.gene014159.t1 AT5G16650 40.789 76 45 0 13 88 2 77 2.54e-11 61.2
MS.gene014159.t1 AT1G80030 50.000 66 28 2 24 87 77 139 2.68e-11 63.9
MS.gene014159.t1 AT1G80030 50.000 66 28 2 24 87 77 139 2.80e-11 63.9
MS.gene014159.t1 AT1G80030 50.000 66 28 2 24 87 77 139 2.80e-11 63.9
MS.gene014159.t1 AT1G80030 50.000 66 28 2 24 87 77 139 2.80e-11 63.9
MS.gene014159.t1 AT4G39960 39.560 91 50 3 23 109 86 175 3.76e-11 63.5
MS.gene014159.t1 AT4G39960 39.560 91 50 3 23 109 86 175 3.76e-11 63.5
MS.gene014159.t1 AT3G08970 51.562 64 30 1 24 87 29 91 3.91e-11 63.5
MS.gene014159.t1 AT3G08970 51.562 64 30 1 24 87 29 91 3.91e-11 63.5
MS.gene014159.t1 AT1G59725 42.424 66 36 1 24 87 6 71 6.23e-11 62.4
MS.gene014159.t1 AT2G22360 48.438 64 32 1 24 87 88 150 7.38e-11 62.4

Find 50 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTGCCTTCCTCTTTAA+AGG 0.137096 7.4:-16414103 None:intergenic
ATACTTCCTTAGCCCATTTC+TGG 0.179895 7.4:-16414057 None:intergenic
TAATTCTGCAGGAGAATTAA+AGG 0.256912 7.4:+16414021 MS.gene014159:intron
AAAGAAGGCTTATTACAAAT+TGG 0.280754 7.4:+16412227 MS.gene014159:CDS
CAACAAAAGCCTACCAGAAA+TGG 0.329929 7.4:+16414044 MS.gene014159:CDS
AATTCCTCTTCAGAGGGTTC+TGG 0.332420 7.4:-16414324 None:intergenic
TCATCACCAGGATTCTTATC+TGG 0.362396 7.4:-16412264 None:intergenic
ACTGACCTTTCCTCTCATTT+CGG 0.368205 7.4:-16414251 None:intergenic
TAAAGGACTTGTGGGTGGTT+TGG 0.373974 7.4:-16414086 None:intergenic
TTCCTCTTTAAAGGACTTGT+GGG 0.398805 7.4:-16414094 None:intergenic
TTTCTCTTCGTCTCCAAGAA+TGG 0.400542 7.4:-16412433 None:intergenic
ACTTGACTCACACCGATTCA+AGG 0.428801 7.4:+16413448 MS.gene014159:CDS
CTTCCTCTTTAAAGGACTTG+TGG 0.442578 7.4:-16414095 None:intergenic
ATCTTCAATTTCTTCATCAT+CGG 0.442588 7.4:-16411470 None:intergenic
TTCTTGGAGACGAAGAGAAA+CGG 0.455460 7.4:+16412436 MS.gene014159:CDS
GGTTCTTGGGTTGGAGAAAA+CGG 0.460667 7.4:+16412188 MS.gene014159:intron
TCTTGGAGACGAAGAGAAAC+GGG 0.461614 7.4:+16412437 MS.gene014159:CDS
GCGTCTCTAGTATCAAAGTA+TGG 0.472145 7.4:+16414288 MS.gene014159:CDS
TGGCGCCGAGGAAGAAAACT+AGG 0.485201 7.4:+16411443 MS.gene014159:CDS
AACAAAAGCCTACCAGAAAT+GGG 0.487122 7.4:+16414045 MS.gene014159:CDS
TTTCAAAACAATGTACAAGA+AGG 0.494913 7.4:+16413113 MS.gene014159:CDS
CATCAAGAATGTCCTTGAAT+CGG 0.509603 7.4:-16413460 None:intergenic
CTTCTTTATTTCTTGTTGAG+AGG 0.513111 7.4:-16412211 None:intergenic
CTCTTTAAAGGACTTGTGGG+TGG 0.519289 7.4:-16414091 None:intergenic
AGTACAAGGGGAATATGAAA+AGG 0.520113 7.4:+16413305 MS.gene014159:CDS
CTTGATGAGGCTATAGCTGC+TGG 0.521762 7.4:+16413476 MS.gene014159:CDS
CACCCACAAGTCCTTTAAAG+AGG 0.526019 7.4:+16414092 MS.gene014159:CDS
CTCCATCCAGATAAGAATCC+TGG 0.528887 7.4:+16412258 MS.gene014159:CDS
AGCTTCAAATTCCTCTTCAG+AGG 0.534350 7.4:-16414331 None:intergenic
CACCAGGATTCTTATCTGGA+TGG 0.539771 7.4:-16412260 None:intergenic
GGAGTTTGAAGCAAACTACC+GGG 0.541480 7.4:+16413240 MS.gene014159:CDS
CACAAGTCCTTTAAAGAGGA+AGG 0.544290 7.4:+16414096 MS.gene014159:CDS
GCTTCAAATTCCTCTTCAGA+GGG 0.547917 7.4:-16414330 None:intergenic
ACCTCAAAAGACTCTCTACC+AGG 0.549839 7.4:+16411495 MS.gene014159:CDS
AGGAGTTTGAAGCAAACTAC+CGG 0.550523 7.4:+16413239 MS.gene014159:CDS
TTCCTTAGCCCATTTCTGGT+AGG 0.565926 7.4:-16414053 None:intergenic
TCTGTTAATCAGGATCTGGC+AGG 0.566964 7.4:+16413066 MS.gene014159:intron
CTTATTACAAATTGGCATTG+CGG 0.571383 7.4:+16412235 MS.gene014159:CDS
AGCCTACCAGAAATGGGCTA+AGG 0.571998 7.4:+16414051 MS.gene014159:CDS
CTCTCAACAAGAAATAAAGA+AGG 0.577556 7.4:+16412212 MS.gene014159:CDS
GGTCACTGAAGCTGATATTG+AGG 0.586002 7.4:+16413219 MS.gene014159:intron
CGGGCTCTCTATGATCAGAC+TGG 0.592329 7.4:+16412456 MS.gene014159:CDS
TATCACAACGCCGAAATGAG+AGG 0.612937 7.4:+16414241 MS.gene014159:CDS
TATGCCAGAACCCTCTGAAG+AGG 0.616007 7.4:+16414320 MS.gene014159:CDS
ATTCAAGGACATTCTTGATG+AGG 0.621008 7.4:+16413463 MS.gene014159:CDS
AGATAAGAATCCTGGTGATG+AGG 0.625604 7.4:+16412266 MS.gene014159:CDS
CAACGCCGAAATGAGAGGAA+AGG 0.636406 7.4:+16414246 MS.gene014159:CDS
TCTCTAGTATCAAAGTATGG+TGG 0.654748 7.4:+16414291 MS.gene014159:CDS
GGCGCCGAGGAAGAAAACTA+GGG 0.675011 7.4:+16411444 MS.gene014159:CDS
GAGTTTGAAGCAAACTACCG+GGG 0.707683 7.4:+16413241 MS.gene014159:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTATTATTTGTTTGT+TGG + chr7.4:16412329-16412348 MS.gene014159:intron 10.0%
!! AACAATTAATACTCTTAAAT+TGG + chr7.4:16413849-16413868 MS.gene014159:intron 15.0%
!!! AATTTAAGAGTATTAATTGT+TGG - chr7.4:16413850-16413869 None:intergenic 15.0%
!!! TGCTTAAATTTATTATTTTG+CGG + chr7.4:16411912-16411931 MS.gene014159:intron 15.0%
!! ATCAGAATATAGGAATATAA+TGG + chr7.4:16412667-16412686 MS.gene014159:intron 20.0%
!!! AAGAAAGCATTATTAATTTG+TGG + chr7.4:16413329-16413348 MS.gene014159:intron 20.0%
!!! CCATAGAAAAGTATTTATAA+TGG - chr7.4:16413958-16413977 None:intergenic 20.0%
!!! CCATTATAAATACTTTTCTA+TGG + chr7.4:16413955-16413974 MS.gene014159:intron 20.0%
!!! GTCTGTTAAATTTTATTTGA+GGG + chr7.4:16412625-16412644 MS.gene014159:intron 20.0%
!!! TTAATTGATTTACTCTGTAA+TGG + chr7.4:16414155-16414174 MS.gene014159:intron 20.0%
! AAAGAAGGCTTATTACAAAT+TGG + chr7.4:16412227-16412246 MS.gene014159:CDS 25.0%
! AATACAAACTTTGTTCAACA+TGG - chr7.4:16411694-16411713 None:intergenic 25.0%
! AATTAGCATATTAACTCCTT+TGG + chr7.4:16413671-16413690 MS.gene014159:intron 25.0%
! ACATCATTATCTATGTTAAC+CGG - chr7.4:16413818-16413837 None:intergenic 25.0%
! ATAAAATTTAACAGACCACA+AGG - chr7.4:16412621-16412640 None:intergenic 25.0%
! ATACTACTGAATCAGAATAT+AGG + chr7.4:16412657-16412676 MS.gene014159:intron 25.0%
! ATCTTCAATTTCTTCATCAT+CGG - chr7.4:16411473-16411492 None:intergenic 25.0%
! ATTTGACCTATAAAAAGCAA+TGG - chr7.4:16414190-16414209 None:intergenic 25.0%
! CAAATGATCCATTGAAAAAA+AGG - chr7.4:16412055-16412074 None:intergenic 25.0%
! CATTAAACAAACAATCATCA+AGG - chr7.4:16413995-16414014 None:intergenic 25.0%
! CTTTCTTAGAAAAATACCAA+AGG - chr7.4:16413690-16413709 None:intergenic 25.0%
! TATGGGCATACATATATAAT+TGG - chr7.4:16412788-16412807 None:intergenic 25.0%
! TTAGAGAATAGATAAATGTC+CGG + chr7.4:16413796-16413815 MS.gene014159:intron 25.0%
! TTTAGTCAGATATTTGGTAT+AGG + chr7.4:16413533-16413552 MS.gene014159:intron 25.0%
! TTTCAAAACAATGTACAAGA+AGG + chr7.4:16413113-16413132 MS.gene014159:CDS 25.0%
! TTTGCTTAAATACCAAAATC+TGG + chr7.4:16413929-16413948 MS.gene014159:intron 25.0%
!! AAATAACTTTTTGCAATTGC+TGG - chr7.4:16412413-16412432 None:intergenic 25.0%
!! CAAAAAGTTATTTCCATTCT+TGG + chr7.4:16412420-16412439 MS.gene014159:CDS 25.0%
!! TAGGAATATAATGGTGTTAA+CGG + chr7.4:16412676-16412695 MS.gene014159:intron 25.0%
!! TTGATCTGTGAAATTTTCAA+TGG + chr7.4:16411815-16411834 MS.gene014159:intron 25.0%
!!! ATTTGTTTGTTGGCTTTTTT+GGG + chr7.4:16412339-16412358 MS.gene014159:intron 25.0%
!!! CTTTTTTTCAATGGATCATT+TGG + chr7.4:16412053-16412072 MS.gene014159:intron 25.0%
!!! GGTCTGTTAAATTTTATTTG+AGG + chr7.4:16412624-16412643 MS.gene014159:intron 25.0%
!!! GTCAAGAATTATTTTTGTTG+AGG - chr7.4:16412115-16412134 None:intergenic 25.0%
!!! TATTTGTTTGTTGGCTTTTT+TGG + chr7.4:16412338-16412357 MS.gene014159:intron 25.0%
!!! TCAGTGATTTATGTTTTGAT+TGG + chr7.4:16411866-16411885 MS.gene014159:intron 25.0%
!!! TGATTGCTTTGATTTTTTTG+AGG - chr7.4:16414385-16414404 None:intergenic 25.0%
!!! TGGTTAAACCTTTTTTTCAA+TGG + chr7.4:16412044-16412063 MS.gene014159:intron 25.0%
!!! TTGTATTTTTGTGTGTGTTA+AGG + chr7.4:16411707-16411726 MS.gene014159:intron 25.0%
ACAAGTGGAACAAATAACAA+TGG - chr7.4:16412087-16412106 None:intergenic 30.0%
ACCTAAAATGAAGTCAACAA+CGG - chr7.4:16412171-16412190 None:intergenic 30.0%
ATTAATCCGGCATAATATGT+TGG + chr7.4:16412561-16412580 MS.gene014159:intron 30.0%
ATTACAAAGTGGAAATTGAG+AGG - chr7.4:16412740-16412759 None:intergenic 30.0%
CATTATCTCTTCTGTTAATC+AGG + chr7.4:16413056-16413075 MS.gene014159:intron 30.0%
CTAAAAGCAAAATAACTGCA+AGG - chr7.4:16413639-16413658 None:intergenic 30.0%
CTCTCAACAAGAAATAAAGA+AGG + chr7.4:16412212-16412231 MS.gene014159:CDS 30.0%
CTGTTCAAGATGAATTAATC+CGG + chr7.4:16412548-16412567 MS.gene014159:intron 30.0%
CTTAACATGTTCATTCAGAT+GGG + chr7.4:16412818-16412837 MS.gene014159:intron 30.0%
CTTATTACAAATTGGCATTG+CGG + chr7.4:16412235-16412254 MS.gene014159:CDS 30.0%
GATTTACAATTTGAATGCCT+AGG + chr7.4:16412583-16412602 MS.gene014159:intron 30.0%
GGCATACATATATAATTGGA+AGG - chr7.4:16412784-16412803 None:intergenic 30.0%
GGTCTATGTTTCTTATAACT+AGG + chr7.4:16413870-16413889 MS.gene014159:intron 30.0%
GTAAATCCAACATATTATGC+CGG - chr7.4:16412570-16412589 None:intergenic 30.0%
GTAATTACTTGTGTTCATAC+AGG + chr7.4:16412371-16412390 MS.gene014159:intron 30.0%
TAATGTTCTCTTAATTCTGC+AGG + chr7.4:16414010-16414029 MS.gene014159:intron 30.0%
TAATTCTGCAGGAGAATTAA+AGG + chr7.4:16414021-16414040 MS.gene014159:intron 30.0%
TATCTGACTAAAACCTTGTT+CGG - chr7.4:16413525-16413544 None:intergenic 30.0%
TGTCCAAAATGCTAATTGTT+GGG - chr7.4:16412998-16413017 None:intergenic 30.0%
TTAATAGAACAAGCAAAACC+CGG - chr7.4:16414139-16414158 None:intergenic 30.0%
! AACCAGAGAACAAAGATTTT+TGG - chr7.4:16411979-16411998 None:intergenic 30.0%
! CTTCTTTATTTCTTGTTGAG+AGG - chr7.4:16412214-16412233 None:intergenic 30.0%
! TCTGTGAAATTTTCAATGGA+AGG + chr7.4:16411819-16411838 MS.gene014159:intron 30.0%
!! ATAGGTTCTAGATTTGTTCT+TGG + chr7.4:16412024-16412043 MS.gene014159:intron 30.0%
!! CAAGGTTTTAGTCAGATATT+TGG + chr7.4:16413527-16413546 MS.gene014159:intron 30.0%
!! CTTGCAGTTATTTTGCTTTT+AGG + chr7.4:16413637-16413656 MS.gene014159:intron 30.0%
!! TTATTTTGCGGCTAATTTCT+TGG + chr7.4:16411924-16411943 MS.gene014159:intron 30.0%
!! TTTACTTGGTCTTGATGATT+TGG - chr7.4:16413718-16413737 None:intergenic 30.0%
!!! ACTGATCCATTGCTTTTTAT+AGG + chr7.4:16414181-16414200 MS.gene014159:intron 30.0%
!!! CGAGTATTGTGAGTATTTTT+TGG - chr7.4:16413776-16413795 None:intergenic 30.0%
!!! GCATTAGTCATTTTTGTAAG+AGG + chr7.4:16413355-16413374 MS.gene014159:intron 30.0%
!!! TGACTTCATTTTAGGTTCTT+GGG + chr7.4:16412175-16412194 MS.gene014159:intron 30.0%
!!! TTATAATGGACTCCAGATTT+TGG - chr7.4:16413944-16413963 None:intergenic 30.0%
!!! TTGACTTCATTTTAGGTTCT+TGG + chr7.4:16412174-16412193 MS.gene014159:intron 30.0%
AAAAGCAAGTCAGTAGATAG+TGG + chr7.4:16413609-16413628 MS.gene014159:intron 35.0%
AAAGCAAGTCAGTAGATAGT+GGG + chr7.4:16413610-16413629 MS.gene014159:intron 35.0%
AACAAAAGCCTACCAGAAAT+GGG + chr7.4:16414045-16414064 MS.gene014159:CDS 35.0%
AGCGAAATGAAAATTTGCAG+AGG - chr7.4:16411549-16411568 None:intergenic 35.0%
AGTACAAGGGGAATATGAAA+AGG + chr7.4:16413305-16413324 MS.gene014159:CDS 35.0%
ATGTTAAGCGAGACAGAATA+TGG - chr7.4:16412806-16412825 None:intergenic 35.0%
ATTACTTGTGTTCATACAGG+AGG + chr7.4:16412374-16412393 MS.gene014159:intron 35.0%
ATTCAAGGACATTCTTGATG+AGG + chr7.4:16413463-16413482 MS.gene014159:CDS 35.0%
CAGAATCTCAGATTACAAAG+TGG - chr7.4:16412751-16412770 None:intergenic 35.0%
CATCAAGAATGTCCTTGAAT+CGG - chr7.4:16413463-16413482 None:intergenic 35.0%
GCACAGAAAAAGTTGGAAAA+GGG + chr7.4:16414354-16414373 MS.gene014159:CDS 35.0%
GCTTAACATGTTCATTCAGA+TGG + chr7.4:16412817-16412836 MS.gene014159:intron 35.0%
GTCCAAAAATCTTTGTTCTC+TGG + chr7.4:16411974-16411993 MS.gene014159:intron 35.0%
GTGTCCAAAATGCTAATTGT+TGG - chr7.4:16412999-16413018 None:intergenic 35.0%
TAAAAAATCACCTCATCACC+AGG - chr7.4:16412279-16412298 None:intergenic 35.0%
TACTTTGCCTTCCTCTTTAA+AGG - chr7.4:16414106-16414125 None:intergenic 35.0%
TCTCTAGTATCAAAGTATGG+TGG + chr7.4:16414291-16414310 MS.gene014159:CDS 35.0%
TGCACAGAAAAAGTTGGAAA+AGG + chr7.4:16414353-16414372 MS.gene014159:CDS 35.0%
TGTTAAGCGAGACAGAATAT+GGG - chr7.4:16412805-16412824 None:intergenic 35.0%
TTAGCATGTGTTTAGATGCA+CGG - chr7.4:16412146-16412165 None:intergenic 35.0%
! AGCTGTACAAAAAGTACAAG+GGG + chr7.4:16413293-16413312 MS.gene014159:CDS 35.0%
! ATGCCCAACAATTAGCATTT+TGG + chr7.4:16412992-16413011 MS.gene014159:intron 35.0%
! CTCCTTCAAATGCTTTTACT+TGG - chr7.4:16413732-16413751 None:intergenic 35.0%
! GAGCTGTACAAAAAGTACAA+GGG + chr7.4:16413292-16413311 MS.gene014159:CDS 35.0%
! TAACTAGATTTTGCCGAACA+AGG + chr7.4:16413509-16413528 MS.gene014159:intron 35.0%
! TGAGCTGTACAAAAAGTACA+AGG + chr7.4:16413291-16413310 MS.gene014159:CDS 35.0%
! TGTTCTCTGGTTTGATTGTT+TGG + chr7.4:16411987-16412006 MS.gene014159:intron 35.0%
! TTCCTCTTTAAAGGACTTGT+GGG - chr7.4:16414097-16414116 None:intergenic 35.0%
!! AAAGATTTTTGGACGCAGTT+TGG - chr7.4:16411968-16411987 None:intergenic 35.0%
!! GACCAAGTAAAAGCATTTGA+AGG + chr7.4:16413727-16413746 MS.gene014159:intron 35.0%
!! GTTGTTTTGTAATGAACCAC+AGG + chr7.4:16413198-16413217 MS.gene014159:intron 35.0%
!!! CTTGGTCTTGGATCTTTTTT+GGG + chr7.4:16411942-16411961 MS.gene014159:intron 35.0%
!!! GGTGATGAGGTGATTTTTTA+AGG + chr7.4:16412279-16412298 MS.gene014159:intron 35.0%
!!! TCCGTTGTTGACTTCATTTT+AGG + chr7.4:16412167-16412186 MS.gene014159:intron 35.0%
!!! TCTTGGTCTTGGATCTTTTT+TGG + chr7.4:16411941-16411960 MS.gene014159:intron 35.0%
!!! TTCATTTTAGGTTCTTGGGT+TGG + chr7.4:16412179-16412198 MS.gene014159:intron 35.0%
ACTGACCTTTCCTCTCATTT+CGG - chr7.4:16414254-16414273 None:intergenic 40.0%
AGCTTCAAATTCCTCTTCAG+AGG - chr7.4:16414334-16414353 None:intergenic 40.0%
ATACCACAATGCATCAGGAA+AGG - chr7.4:16413162-16413181 None:intergenic 40.0%
ATACTTCCTTAGCCCATTTC+TGG - chr7.4:16414060-16414079 None:intergenic 40.0%
ATAGGTCTTAGTTTCTACGC+AGG + chr7.4:16413551-16413570 MS.gene014159:intron 40.0%
CAACAAAAGCCTACCAGAAA+TGG + chr7.4:16414044-16414063 MS.gene014159:CDS 40.0%
CATGTATACCACAATGCATC+AGG - chr7.4:16413167-16413186 None:intergenic 40.0%
CTCTTCTGTTAATCAGGATC+TGG + chr7.4:16413062-16413081 MS.gene014159:intron 40.0%
GCGTCTCTAGTATCAAAGTA+TGG + chr7.4:16414288-16414307 MS.gene014159:CDS 40.0%
GCTTCAAATTCCTCTTCAGA+GGG - chr7.4:16414333-16414352 None:intergenic 40.0%
TACCACAATGCATCAGGAAA+GGG - chr7.4:16413161-16413180 None:intergenic 40.0%
TCATCACCAGGATTCTTATC+TGG - chr7.4:16412267-16412286 None:intergenic 40.0%
TGAAGCTGCACAGAAAAAGT+TGG + chr7.4:16414347-16414366 MS.gene014159:CDS 40.0%
TTCTTGGAGACGAAGAGAAA+CGG + chr7.4:16412436-16412455 MS.gene014159:CDS 40.0%
TTGGAATTGCACTTGCACAT+AGG + chr7.4:16412006-16412025 MS.gene014159:intron 40.0%
TTTCTCTTCGTCTCCAAGAA+TGG - chr7.4:16412436-16412455 None:intergenic 40.0%
TTTGTTGAGGAGTCAACAAG+TGG - chr7.4:16412102-16412121 None:intergenic 40.0%
! AGATAAGAATCCTGGTGATG+AGG + chr7.4:16412266-16412285 MS.gene014159:CDS 40.0%
! AGGAGTTTGAAGCAAACTAC+CGG + chr7.4:16413239-16413258 MS.gene014159:CDS 40.0%
! CACAAGTCCTTTAAAGAGGA+AGG + chr7.4:16414096-16414115 MS.gene014159:CDS 40.0%
! CTTCCTCTTTAAAGGACTTG+TGG - chr7.4:16414098-16414117 None:intergenic 40.0%
! GAAGGCTAGACTAGAGTATT+GGG + chr7.4:16411837-16411856 MS.gene014159:intron 40.0%
!! CAAGGACTTGCTAAAAACCT+AGG - chr7.4:16412603-16412622 None:intergenic 40.0%
!! GAAACCCTAGTTTTCTTCCT+CGG - chr7.4:16411451-16411470 None:intergenic 40.0%
!! GCAAAGTAAGTTGATCAACC+GGG + chr7.4:16414118-16414137 MS.gene014159:intron 40.0%
!! GGCAAAGTAAGTTGATCAAC+CGG + chr7.4:16414117-16414136 MS.gene014159:intron 40.0%
!! TGCATTGATGATGATGTGAG+TGG + chr7.4:16412480-16412499 MS.gene014159:intron 40.0%
!!! AGGTTTTTAGCAAGTCCTTG+TGG + chr7.4:16412603-16412622 MS.gene014159:intron 40.0%
!!! GTTTGTTGGCTTTTTTGGGT+TGG + chr7.4:16412343-16412362 MS.gene014159:intron 40.0%
AAGCGTGAATTTGCGATACC+TGG - chr7.4:16411516-16411535 None:intergenic 45.0%
AATTCCTCTTCAGAGGGTTC+TGG - chr7.4:16414327-16414346 None:intergenic 45.0%
ACCACAATGCATCAGGAAAG+GGG - chr7.4:16413160-16413179 None:intergenic 45.0%
ACCTCAAAAGACTCTCTACC+AGG + chr7.4:16411495-16411514 MS.gene014159:CDS 45.0%
AGCCTTGGTCTCTCAATCTA+GGG - chr7.4:16412714-16412733 None:intergenic 45.0%
ATATCAGCTTCAGTGACCTG+TGG - chr7.4:16413217-16413236 None:intergenic 45.0%
CACCAGGATTCTTATCTGGA+TGG - chr7.4:16412263-16412282 None:intergenic 45.0%
CTCCATCCAGATAAGAATCC+TGG + chr7.4:16412258-16412277 MS.gene014159:CDS 45.0%
GAAATTGAGAGGAAGAGCCT+TGG - chr7.4:16412729-16412748 None:intergenic 45.0%
GGAAGGCTAGACTAGAGTAT+TGG + chr7.4:16411836-16411855 MS.gene014159:intron 45.0%
GGTCACTGAAGCTGATATTG+AGG + chr7.4:16413219-16413238 MS.gene014159:intron 45.0%
TAAAGGACTTGTGGGTGGTT+TGG - chr7.4:16414089-16414108 None:intergenic 45.0%
TATCACAACGCCGAAATGAG+AGG + chr7.4:16414241-16414260 MS.gene014159:CDS 45.0%
TCTGTTAATCAGGATCTGGC+AGG + chr7.4:16413066-16413085 MS.gene014159:intron 45.0%
TCTTGGAGACGAAGAGAAAC+GGG + chr7.4:16412437-16412456 MS.gene014159:CDS 45.0%
TGCGGCTAATTTCTTGGTCT+TGG + chr7.4:16411930-16411949 MS.gene014159:intron 45.0%
! ACCTGGTAGAGAGTCTTTTG+AGG - chr7.4:16411499-16411518 None:intergenic 45.0%
! CACCCACAAGTCCTTTAAAG+AGG + chr7.4:16414092-16414111 MS.gene014159:CDS 45.0%
! CTCTTTAAAGGACTTGTGGG+TGG - chr7.4:16414094-16414113 None:intergenic 45.0%
! GAGTTTGAAGCAAACTACCG+GGG + chr7.4:16413241-16413260 MS.gene014159:CDS 45.0%
! GGAGTTTGAAGCAAACTACC+GGG + chr7.4:16413240-16413259 MS.gene014159:CDS 45.0%
! TTTTCTCTGAGTCAGAACCC+CGG - chr7.4:16413261-16413280 None:intergenic 45.0%
!! ACTTGACTCACACCGATTCA+AGG + chr7.4:16413448-16413467 MS.gene014159:CDS 45.0%
!! GATGATGTGAGTGGTGTTGT+TGG + chr7.4:16412489-16412508 MS.gene014159:intron 45.0%
!! GGTTCTTGGGTTGGAGAAAA+CGG + chr7.4:16412188-16412207 MS.gene014159:intron 45.0%
!! TAAGGCTGCTTGTTATGCTG+TGG + chr7.4:16412297-16412316 MS.gene014159:intron 45.0%
!! TTCCTTAGCCCATTTCTGGT+AGG - chr7.4:16414056-16414075 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTATGT+TGG + chr7.4:16411615-16411634 MS.gene014159:intron 5.0%
CAACGCCGAAATGAGAGGAA+AGG + chr7.4:16414246-16414265 MS.gene014159:CDS 50.0%
CTTGATGAGGCTATAGCTGC+TGG + chr7.4:16413476-16413495 MS.gene014159:CDS 50.0%
GAGCCTTGGTCTCTCAATCT+AGG - chr7.4:16412715-16412734 None:intergenic 50.0%
GAGGCTATAGCTGCTGGTAA+GGG + chr7.4:16413482-16413501 MS.gene014159:intron 50.0%
GCCTTGGTCTCTCAATCTAG+GGG - chr7.4:16412713-16412732 None:intergenic 50.0%
TCCCCTTTCCTGATGCATTG+TGG + chr7.4:16413156-16413175 MS.gene014159:intron 50.0%
TGAGGCTATAGCTGCTGGTA+AGG + chr7.4:16413481-16413500 MS.gene014159:intron 50.0%
! TATGCCAGAACCCTCTGAAG+AGG + chr7.4:16414320-16414339 MS.gene014159:CDS 50.0%
!! AGCCTACCAGAAATGGGCTA+AGG + chr7.4:16414051-16414070 MS.gene014159:CDS 50.0%
CGGGCTCTCTATGATCAGAC+TGG + chr7.4:16412456-16412475 MS.gene014159:CDS 55.0%
GCCCCTAGATTGAGAGACCA+AGG + chr7.4:16412709-16412728 MS.gene014159:intron 55.0%
! GGCGCCGAGGAAGAAAACTA+GGG + chr7.4:16411444-16411463 MS.gene014159:CDS 55.0%
! TGGCGCCGAGGAAGAAAACT+AGG + chr7.4:16411443-16411462 MS.gene014159:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 16411442 16414416 16411442 ID=MS.gene014159
chr7.4 mRNA 16411442 16414416 16411442 ID=MS.gene014159.t1;Parent=MS.gene014159
chr7.4 exon 16411442 16411516 16411442 ID=MS.gene014159.t1.exon1;Parent=MS.gene014159.t1
chr7.4 CDS 16411442 16411516 16411442 ID=cds.MS.gene014159.t1;Parent=MS.gene014159.t1
chr7.4 exon 16412189 16412287 16412189 ID=MS.gene014159.t1.exon2;Parent=MS.gene014159.t1
chr7.4 CDS 16412189 16412287 16412189 ID=cds.MS.gene014159.t1;Parent=MS.gene014159.t1
chr7.4 exon 16412393 16412494 16412393 ID=MS.gene014159.t1.exon3;Parent=MS.gene014159.t1
chr7.4 CDS 16412393 16412494 16412393 ID=cds.MS.gene014159.t1;Parent=MS.gene014159.t1
chr7.4 exon 16413078 16413134 16413078 ID=MS.gene014159.t1.exon4;Parent=MS.gene014159.t1
chr7.4 CDS 16413078 16413134 16413078 ID=cds.MS.gene014159.t1;Parent=MS.gene014159.t1
chr7.4 exon 16413220 16413326 16413220 ID=MS.gene014159.t1.exon5;Parent=MS.gene014159.t1
chr7.4 CDS 16413220 16413326 16413220 ID=cds.MS.gene014159.t1;Parent=MS.gene014159.t1
chr7.4 exon 16413415 16413497 16413415 ID=MS.gene014159.t1.exon6;Parent=MS.gene014159.t1
chr7.4 CDS 16413415 16413497 16413415 ID=cds.MS.gene014159.t1;Parent=MS.gene014159.t1
chr7.4 exon 16414032 16414122 16414032 ID=MS.gene014159.t1.exon7;Parent=MS.gene014159.t1
chr7.4 CDS 16414032 16414122 16414032 ID=cds.MS.gene014159.t1;Parent=MS.gene014159.t1
chr7.4 exon 16414203 16414416 16414203 ID=MS.gene014159.t1.exon8;Parent=MS.gene014159.t1
chr7.4 CDS 16414203 16414416 16414203 ID=cds.MS.gene014159.t1;Parent=MS.gene014159.t1
Gene Sequence

>MS.gene014159

ATGGCGCCGAGGAAGAAAACTAGGGTTTCCGATGATGAAGAAATTGAAGATCAACCTCAAAAGACTCTCTACCAGGTATCGCAAATTCACGCTTTAATATCTTGCCTCTGCAAATTTTCATTTCGCTCTTTTTCTCAGAATATTTTTTAGTTTATTCTTTGCGTCTGAATGTTTTTTTTTTTTTTTTTTATGTTGGTTTTTTGTTCTACAATAGTGATTTGATTCTTTTTTTTCTTTGTTTATATATGACCATGTTGAACAAAGTTTGTATTTTTGTGTGTGTTAAGGTGAGTGTTTATCAAATGAGATTTTGAGTGATTTTTGTAAAATTGATTCTTTTAAATTGAGTTGAATTGAAGTGATTTATTATTCTTTGATCTGTGAAATTTTCAATGGAAGGCTAGACTAGAGTATTGGGAATGAATCAGTGATTTATGTTTTGATTGGAAGAAATAAGCTCATTTTGTAACTGCTTAAATTTATTATTTTGCGGCTAATTTCTTGGTCTTGGATCTTTTTTGGGCCAAACTGCGTCCAAAAATCTTTGTTCTCTGGTTTGATTGTTTGGAATTGCACTTGCACATAGGTTCTAGATTTGTTCTTGGTTAAACCTTTTTTTCAATGGATCATTTGGTTTAGTTGCCATTGTTATTTGTTCCACTTGTTGACTCCTCAACAAAAATAATTCTTGACATCTTCAACCGTGCATCTAAACACATGCTAAATCCGTTGTTGACTTCATTTTAGGTTCTTGGGTTGGAGAAAACGGCCTCTCAACAAGAAATAAAGAAGGCTTATTACAAATTGGCATTGCGGCTCCATCCAGATAAGAATCCTGGTGATGAGGTGATTTTTTAAGGCTGCTTGTTATGCTGTGGATTGCGTTTATATTTTATTATTTGTTTGTTGGCTTTTTTGGGTTGGTAATTGTAATTACTTGTGTTCATACAGGAGGCTAAAGAGAAATTCCAGCAATTGCAAAAAGTTATTTCCATTCTTGGAGACGAAGAGAAACGGGCTCTCTATGATCAGACTGGTTGCATTGATGATGATGTGAGTGGTGTTGTTGGTGCTAGTACTATTGTTGTTTTTTATTAATTCGTTTGCTGTTCAAGATGAATTAATCCGGCATAATATGTTGGATTTACAATTTGAATGCCTAGGTTTTTAGCAAGTCCTTGTGGTCTGTTAAATTTTATTTGAGGGAATTATCTAATACTACTGAATCAGAATATAGGAATATAATGGTGTTAACGGACTAAAAGTAGCCCCTAGATTGAGAGACCAAGGCTCTTCCTCTCAATTTCCACTTTGTAATCTGAGATTCTGTCTATTTTTTCCTTCCAATTATATATGTATGCCCATATTCTGTCTCGCTTAACATGTTCATTCAGATGGGTTGCTTCACACTTTTCTCATAAGAACTTTTAAGTCTTGCTAATGAGTTCTTTAAGAACACTAGTTAATGAGCATTTGATTTCTCTATTGAATGCTTTTAACTACTTAAAATATGTAAGTATCAAATGTTTTTTGAGTTACTAGTATAGTAAATGCCCAACAATTAGCATTTTGGACACTTTAAACAGTTTAGCTATGTTGCAGACATCTATGACTCATTATCTCTTCTGTTAATCAGGATCTGGCAGGAGATGTTCAGAATCTTCACGCATTTTTCAAAACAATGTACAAGAAGGTATTTGTTGAATATTTGCTATCCCCTTTCCTGATGCATTGTGGTATACATGTTTTTATATGCGTTGTTTTGTAATGAACCACAGGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTACCGGGGTTCTGACTCAGAGAAAAATGATTTGATTGAGCTGTACAAAAAGTACAAGGGGAATATGAAAAGGTAAGAAAGCATTATTAATTTGTGGTGTGCATTAGTCATTTTTGTAAGAGGCTTTGAATGTGTTATCTGAAGTAAATTCTCTTTGCAGACTTTTTTGTTCAATGCTTTGTTCAGATGCTAAACTTGACTCACACCGATTCAAGGACATTCTTGATGAGGCTATAGCTGCTGGTAAGGGACATTAACTAGATTTTGCCGAACAAGGTTTTAGTCAGATATTTGGTATAGGTCTTAGTTTCTACGCAGGAGAAGATATATGTTGAATCTGAACTGTTACACTAGAAAAGCAAGTCAGTAGATAGTGGGAGACCTTGCAGTTATTTTGCTTTTAGGCTTTAGCGCAGAATTAGCATATTAACTCCTTTGGTATTTTTCTAAGAAAGAAAGACCAAATCATCAAGACCAAGTAAAAGCATTTGAAGGAGTTAATGTTAATTTTTTTTTCGCCAAAAAATACTCACAATACTCGTTAGAGAATAGATAAATGTCCGGTTAACATAGATAATGATGTAAAAGAGTTCCAACAATTAATACTCTTAAATTGGTCTATGTTTCTTATAACTAGGATAAAAAGTAACATGTTTTTTTTATAACAAAGACTGTTTGCTTAAATACCAAAATCTGGAGTCCATTATAAATACTTTTCTATGGTTGTTAAGCATCTTCCTTGATGATTGTTTGTTTAATGTTCTCTTAATTCTGCAGGAGAATTAAAGGCAACAAAAGCCTACCAGAAATGGGCTAAGGAAGTATCAGAAACCAAACCACCCACAAGTCCTTTAAAGAGGAAGGCAAAGTAAGTTGATCAACCGGGTTTTGCTTGTTCTATTAATTGATTTACTCTGTAATGGATGACTGATCCATTGCTTTTTATAGGTCAAATAAGCAGTCTGAAACAGATCTGTGTGCAATCATATCACAACGCCGAAATGAGAGGAAAGGTCAGTTTGATTCAATGTTTGCGTCTCTAGTATCAAAGTATGGTGGAAGTGATATGCCAGAACCCTCTGAAGAGGAATTTGAAGCTGCACAGAAAAAGTTGGAAAAGGGAAGATCCTCAAAAAAATCAAAGCAATCAAAGCGAAAGTAA

Protein sequence

>MS.gene014159.t1

MAPRKKTRVSDDEEIEDQPQKTLYQVLGLEKTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTGCIDDDDLAGDVQNLHAFFKTMYKKVTEADIEEFEANYRGSDSEKNDLIELYKKYKGNMKRLFCSMLCSDAKLDSHRFKDILDEAIAAGELKATKAYQKWAKEVSETKPPTSPLKRKAKSNKQSETDLCAIISQRRNERKGQFDSMFASLVSKYGGSDMPEPSEEEFEAAQKKLEKGRSSKKSKQSKRK