Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014270.t1 | XP_003603941.1 | 95.2 | 312 | 15 | 0 | 1 | 312 | 1 | 312 | 5.40E-166 | 593.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014270.t1 | B9HRL7 | 78.4 | 306 | 66 | 0 | 7 | 312 | 1 | 306 | 1.7e-139 | 496.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014270.t1 | G7J743 | 95.2 | 312 | 15 | 0 | 1 | 312 | 1 | 312 | 3.9e-166 | 593.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014270 | MS.gene23274 | PPI |
| MS.gene014270 | MS.gene039472 | PPI |
| MS.gene014270 | MS.gene003737 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014270.t1 | MTR_3g116840 | 95.192 | 312 | 15 | 0 | 1 | 312 | 1 | 312 | 0.0 | 615 |
| MS.gene014270.t1 | MTR_3g111980 | 71.895 | 306 | 84 | 1 | 9 | 312 | 5 | 310 | 3.32e-165 | 462 |
| MS.gene014270.t1 | MTR_3g111990 | 69.079 | 304 | 94 | 0 | 9 | 312 | 5 | 308 | 9.54e-161 | 450 |
| MS.gene014270.t1 | MTR_5g020740 | 68.092 | 304 | 97 | 0 | 9 | 312 | 6 | 309 | 1.48e-156 | 440 |
| MS.gene014270.t1 | MTR_4g070370 | 66.887 | 302 | 100 | 0 | 9 | 310 | 8 | 309 | 2.42e-152 | 430 |
| MS.gene014270.t1 | MTR_4g070340 | 62.258 | 310 | 115 | 1 | 1 | 310 | 1 | 308 | 9.02e-145 | 411 |
| MS.gene014270.t1 | MTR_4g070340 | 61.290 | 310 | 113 | 2 | 1 | 310 | 1 | 303 | 1.37e-139 | 397 |
| MS.gene014270.t1 | MTR_5g020760 | 54.921 | 315 | 130 | 3 | 9 | 312 | 5 | 318 | 1.70e-118 | 343 |
| MS.gene014270.t1 | MTR_5g020800 | 54.603 | 315 | 131 | 3 | 9 | 312 | 5 | 318 | 3.85e-118 | 343 |
| MS.gene014270.t1 | MTR_4g070340 | 61.728 | 243 | 93 | 0 | 66 | 308 | 15 | 257 | 1.11e-113 | 330 |
| MS.gene014270.t1 | MTR_4g070360 | 49.346 | 306 | 153 | 1 | 9 | 312 | 4 | 309 | 3.45e-106 | 312 |
| MS.gene014270.t1 | MTR_5g020760 | 54.615 | 260 | 107 | 2 | 9 | 257 | 5 | 264 | 1.47e-96 | 286 |
| MS.gene014270.t1 | MTR_5g027290 | 47.896 | 309 | 153 | 4 | 9 | 311 | 4 | 310 | 4.07e-95 | 284 |
| MS.gene014270.t1 | MTR_8g071130 | 47.742 | 310 | 155 | 4 | 9 | 312 | 4 | 312 | 6.42e-95 | 283 |
| MS.gene014270.t1 | MTR_5g027240 | 47.896 | 309 | 153 | 4 | 9 | 311 | 4 | 310 | 1.51e-93 | 280 |
| MS.gene014270.t1 | MTR_3g008100 | 43.506 | 308 | 162 | 5 | 9 | 312 | 6 | 305 | 4.57e-85 | 258 |
| MS.gene014270.t1 | MTR_3g008140 | 44.590 | 305 | 162 | 5 | 9 | 312 | 6 | 304 | 1.54e-84 | 257 |
| MS.gene014270.t1 | MTR_3g007970 | 43.279 | 305 | 167 | 4 | 9 | 312 | 6 | 305 | 8.20e-83 | 253 |
| MS.gene014270.t1 | MTR_3g008100 | 42.532 | 308 | 158 | 5 | 9 | 312 | 6 | 298 | 5.23e-81 | 248 |
| MS.gene014270.t1 | MTR_1g093720 | 37.705 | 305 | 187 | 2 | 10 | 312 | 15 | 318 | 1.08e-68 | 218 |
| MS.gene014270.t1 | MTR_3g008100 | 41.089 | 202 | 107 | 5 | 9 | 206 | 6 | 199 | 2.45e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014270.t1 | AT4G39230 | 75.658 | 304 | 74 | 0 | 9 | 312 | 5 | 308 | 1.14e-175 | 488 |
| MS.gene014270.t1 | AT1G75280 | 67.869 | 305 | 95 | 2 | 9 | 311 | 6 | 309 | 1.41e-151 | 427 |
| MS.gene014270.t1 | AT1G75290 | 66.230 | 305 | 101 | 1 | 9 | 311 | 6 | 310 | 2.55e-149 | 422 |
| MS.gene014270.t1 | AT1G75290 | 66.230 | 305 | 101 | 1 | 9 | 311 | 33 | 337 | 1.19e-148 | 421 |
| MS.gene014270.t1 | AT1G75300 | 60.188 | 319 | 108 | 2 | 9 | 311 | 6 | 321 | 8.95e-137 | 390 |
| MS.gene014270.t1 | AT1G19540 | 59.355 | 310 | 122 | 2 | 7 | 312 | 1 | 310 | 4.65e-134 | 383 |
| MS.gene014270.t1 | AT1G19540 | 60.000 | 255 | 98 | 2 | 7 | 257 | 1 | 255 | 2.57e-105 | 308 |
| MS.gene014270.t1 | AT4G34540 | 47.697 | 304 | 154 | 1 | 9 | 312 | 8 | 306 | 9.52e-102 | 301 |
| MS.gene014270.t1 | AT1G32100 | 44.516 | 310 | 164 | 4 | 9 | 312 | 10 | 317 | 6.01e-84 | 256 |
| MS.gene014270.t1 | AT4G13660 | 44.516 | 310 | 164 | 4 | 9 | 312 | 10 | 317 | 2.96e-82 | 251 |
| MS.gene014270.t1 | AT4G13660 | 44.516 | 310 | 164 | 4 | 9 | 312 | 10 | 317 | 2.96e-82 | 251 |
Find 65 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAATGCTGCGCCGAATTC+TGG | 0.160415 | 3.3:-94993148 | None:intergenic |
| GCTCACTGTGTGTACATAAA+AGG | 0.206083 | 3.3:+94993809 | MS.gene014270:CDS |
| AATCTCAGACAAACTTATTA+AGG | 0.233599 | 3.3:-94993922 | None:intergenic |
| TCAATGATCTCGTATCTCTA+TGG | 0.304426 | 3.3:+94993504 | MS.gene014270:CDS |
| ATAGACAGCATCATATTTAA+TGG | 0.305042 | 3.3:-94993785 | None:intergenic |
| TTTGAAATTGATCCAACATT+TGG | 0.320418 | 3.3:+94993845 | MS.gene014270:CDS |
| AGATTCTTTCCTTCTGAATT+CGG | 0.325326 | 3.3:+94993066 | MS.gene014270:CDS |
| ACGGCATATGCACTCTTTGC+TGG | 0.343519 | 3.3:-94993120 | None:intergenic |
| ATCCTTGAATTTGTTGATGA+TGG | 0.347770 | 3.3:-94992541 | None:intergenic |
| TGCTTCAGAATCTGTTCCTC+TGG | 0.349482 | 3.3:-94993566 | None:intergenic |
| AACATTTCCAGCTTCTTTGA+TGG | 0.352360 | 3.3:-94992934 | None:intergenic |
| GTGTCAAGCAACTACTTTGC+TGG | 0.363642 | 3.3:+94993195 | MS.gene014270:CDS |
| GATCAATTTCAAAGTTAGTA+TGG | 0.379619 | 3.3:-94993835 | None:intergenic |
| CTCACTGTGTGTACATAAAA+GGG | 0.386311 | 3.3:+94993810 | MS.gene014270:CDS |
| TCTATATGATCATCAAAGTT+TGG | 0.394266 | 3.3:+94992830 | MS.gene014270:CDS |
| CAAAGAAGCTGGAAATGTTA+AGG | 0.420593 | 3.3:+94992938 | MS.gene014270:CDS |
| CGGTTACATCGGAAAGTTCA+TGG | 0.428326 | 3.3:+94992440 | MS.gene014270:CDS |
| AGGATAACAACTTTATCTCT+TGG | 0.434576 | 3.3:-94993261 | None:intergenic |
| ATCCATCATCAACAAATTCA+AGG | 0.437302 | 3.3:+94992539 | MS.gene014270:CDS |
| GCGCCGAATTCTGGCTTTAA+CGG | 0.452773 | 3.3:-94993139 | None:intergenic |
| ATCTCTGCCATCAAAGAAGC+TGG | 0.461263 | 3.3:+94992927 | MS.gene014270:CDS |
| AGAGATAAAGTTGTTATCCT+AGG | 0.472690 | 3.3:+94993264 | MS.gene014270:CDS |
| ATGCCGTTAAAGCCAGAATT+CGG | 0.486275 | 3.3:+94993136 | MS.gene014270:CDS |
| CAATGATCTCGTATCTCTAT+GGG | 0.490781 | 3.3:+94993505 | MS.gene014270:CDS |
| TCTCTATGGGAGAAGAAGAT+TGG | 0.494193 | 3.3:+94993518 | MS.gene014270:CDS |
| ACGTACAACAACAAGATTGA+CGG | 0.497659 | 3.3:-94992568 | None:intergenic |
| CTTTGGGGTTTCCATCTCCT+AGG | 0.498008 | 3.3:-94993281 | None:intergenic |
| ACAGTGGTGTATTTCACATC+AGG | 0.498107 | 3.3:-94993890 | None:intergenic |
| ATAACAACTTTATCTCTTGG+TGG | 0.500817 | 3.3:-94993258 | None:intergenic |
| GATGGATGATTTAGCAGGGT+TGG | 0.503796 | 3.3:-94992523 | None:intergenic |
| CAGATTCTGAAGCAAATTCA+AGG | 0.506368 | 3.3:+94993575 | MS.gene014270:CDS |
| TTGATGATGGATGATTTAGC+AGG | 0.525812 | 3.3:-94992528 | None:intergenic |
| GAGTTGAGTCTCGGATGAGA+AGG | 0.525951 | 3.3:-94992497 | None:intergenic |
| AGCTCCATGCTGTGATAAAG+AGG | 0.527862 | 3.3:-94993229 | None:intergenic |
| AAAGTTGTTATCCTAGGAGA+TGG | 0.536929 | 3.3:+94993270 | MS.gene014270:CDS |
| GTAGCTTCTACTCCAAATGT+TGG | 0.537034 | 3.3:-94993857 | None:intergenic |
| TTCTGAATTCGGAAATGATG+TGG | 0.539147 | 3.3:+94993077 | MS.gene014270:CDS |
| TCTCGGATGAGAAGGAAGGT+TGG | 0.539639 | 3.3:-94992489 | None:intergenic |
| ATCGGTGGCAGCGGTTACAT+CGG | 0.540698 | 3.3:+94992429 | MS.gene014270:CDS |
| GTGGAAGCTAGCGTCAAAGC+TGG | 0.545923 | 3.3:+94992462 | MS.gene014270:CDS |
| ACATCATTTCCGAATTCAGA+AGG | 0.559910 | 3.3:-94993075 | None:intergenic |
| CTACCCTCTTTATCACAGCA+TGG | 0.560618 | 3.3:+94993225 | MS.gene014270:CDS |
| TTGAAAGACAAGGCATTACC+TGG | 0.560825 | 3.3:-94993485 | None:intergenic |
| CAGAATTCGGCGCAGCATTG+AGG | 0.562868 | 3.3:+94993149 | MS.gene014270:CDS |
| CGGCGCAGCATTGAGGCAGA+AGG | 0.565766 | 3.3:+94993156 | MS.gene014270:CDS |
| TTTAAATTGCAATGGCAGGT+GGG | 0.575232 | 3.3:+94992379 | None:intergenic |
| TTGCTTGACACATAAGTGTA+CGG | 0.597039 | 3.3:-94993183 | None:intergenic |
| GGATGAGAAGGAAGGTTGGA+TGG | 0.597335 | 3.3:-94992485 | None:intergenic |
| TGATGATGGATGATTTAGCA+GGG | 0.603826 | 3.3:-94992527 | None:intergenic |
| AATTCGGAAATGATGTGGAT+CGG | 0.605620 | 3.3:+94993082 | MS.gene014270:CDS |
| ATTCTGTATATTAGACCACC+AGG | 0.614061 | 3.3:+94993467 | MS.gene014270:CDS |
| GGTTGGAAAGAGTTGAGTCT+CGG | 0.615631 | 3.3:-94992506 | None:intergenic |
| TGAAAGAATCTATGTTCCAG+AGG | 0.633249 | 3.3:+94993550 | MS.gene014270:CDS |
| GACAGCATCATATTTAATGG+AGG | 0.637215 | 3.3:-94993782 | None:intergenic |
| TGAGTCTCGGATGAGAAGGA+AGG | 0.639125 | 3.3:-94992493 | None:intergenic |
| CATCATATTTAATGGAGGCG+AGG | 0.648947 | 3.3:-94993777 | None:intergenic |
| GCTCCATGCTGTGATAAAGA+GGG | 0.649603 | 3.3:-94993228 | None:intergenic |
| TGATCTTGTCTTGAACACTC+AGG | 0.656329 | 3.3:-94992905 | None:intergenic |
| TACGAGATCATTGAAAGACA+AGG | 0.657957 | 3.3:-94993495 | None:intergenic |
| TCACTGTGTGTACATAAAAG+GGG | 0.662298 | 3.3:+94993811 | MS.gene014270:CDS |
| CATGCTGTGATAAAGAGGGT+AGG | 0.664558 | 3.3:-94993224 | None:intergenic |
| CTAGGAGATGGAAACCCCAA+AGG | 0.669328 | 3.3:+94993282 | MS.gene014270:CDS |
| ATTAAGGAACTCATCTACAG+TGG | 0.700053 | 3.3:-94993906 | None:intergenic |
| AAAGACAAGGCATTACCTGG+TGG | 0.724041 | 3.3:-94993482 | None:intergenic |
| TTACATCGGAAAGTTCATGG+TGG | 0.773819 | 3.3:+94992443 | MS.gene014270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3.3:94993683-94993702 | None:intergenic | 100.0% |
| !!! | CATTAAATTTTCTTACTAAT+AGG | + | chr3.3:94993345-94993364 | MS.gene014270:intron | 15.0% |
| !!! | GTGGTTTAATAATTTAATTT+TGG | + | chr3.3:94993742-94993761 | MS.gene014270:intron | 15.0% |
| !!! | AATATACAGAATTTTGTTCA+AGG | - | chr3.3:94993459-94993478 | None:intergenic | 20.0% |
| !!! | AGCAGTATTTAAGATTTTTA+AGG | - | chr3.3:94992707-94992726 | None:intergenic | 20.0% |
| ! | ATAGACAGCATCATATTTAA+TGG | - | chr3.3:94993788-94993807 | None:intergenic | 25.0% |
| ! | GATCAATTTCAAAGTTAGTA+TGG | - | chr3.3:94993838-94993857 | None:intergenic | 25.0% |
| ! | TCTATATGATCATCAAAGTT+TGG | + | chr3.3:94992830-94992849 | MS.gene014270:CDS | 25.0% |
| !! | ATGAGCAAGATTTTATTGAT+CGG | + | chr3.3:94992411-94992430 | MS.gene014270:CDS | 25.0% |
| !! | TAAAGTATTATGAACAGCAA+AGG | - | chr3.3:94993612-94993631 | None:intergenic | 25.0% |
| !! | TTAATCTTTTTATGATTCCC+AGG | + | chr3.3:94993629-94993648 | MS.gene014270:intron | 25.0% |
| !! | TTTGAAATTGATCCAACATT+TGG | + | chr3.3:94993845-94993864 | MS.gene014270:CDS | 25.0% |
| AGAGATAAAGTTGTTATCCT+AGG | + | chr3.3:94993264-94993283 | MS.gene014270:CDS | 30.0% | |
| AGATTCTTTCCTTCTGAATT+CGG | + | chr3.3:94993066-94993085 | MS.gene014270:CDS | 30.0% | |
| AGCGTATTATATATATGCAG+GGG | + | chr3.3:94992805-94992824 | MS.gene014270:intron | 30.0% | |
| AGGATAACAACTTTATCTCT+TGG | - | chr3.3:94993264-94993283 | None:intergenic | 30.0% | |
| ATAACAACTTTATCTCTTGG+TGG | - | chr3.3:94993261-94993280 | None:intergenic | 30.0% | |
| ATCCATCATCAACAAATTCA+AGG | + | chr3.3:94992539-94992558 | MS.gene014270:CDS | 30.0% | |
| CAGCGTATTATATATATGCA+GGG | + | chr3.3:94992804-94992823 | MS.gene014270:intron | 30.0% | |
| TACTATATATGCTACCAGAA+AGG | - | chr3.3:94992605-94992624 | None:intergenic | 30.0% | |
| TCAGCGTATTATATATATGC+AGG | + | chr3.3:94992803-94992822 | MS.gene014270:intron | 30.0% | |
| ! | AGAATTTTGTTCAAGGTTCT+TGG | - | chr3.3:94993452-94993471 | None:intergenic | 30.0% |
| ! | CATGTCAAATTTTGTGTATC+AGG | + | chr3.3:94992769-94992788 | MS.gene014270:intron | 30.0% |
| !! | ATCCTTGAATTTGTTGATGA+TGG | - | chr3.3:94992544-94992563 | None:intergenic | 30.0% |
| !!! | ATCAACAGCTGTTTTTAACA+AGG | + | chr3.3:94993385-94993404 | MS.gene014270:intron | 30.0% |
| AAAGTTGTTATCCTAGGAGA+TGG | + | chr3.3:94993270-94993289 | MS.gene014270:CDS | 35.0% | |
| AACATTTCCAGCTTCTTTGA+TGG | - | chr3.3:94992937-94992956 | None:intergenic | 35.0% | |
| AATTCGGAAATGATGTGGAT+CGG | + | chr3.3:94993082-94993101 | MS.gene014270:CDS | 35.0% | |
| ACATCATTTCCGAATTCAGA+AGG | - | chr3.3:94993078-94993097 | None:intergenic | 35.0% | |
| ACGTACAACAACAAGATTGA+CGG | - | chr3.3:94992571-94992590 | None:intergenic | 35.0% | |
| ATATGCTACCAGAAAGGAAT+AGG | - | chr3.3:94992599-94992618 | None:intergenic | 35.0% | |
| ATTAAGGAACTCATCTACAG+TGG | - | chr3.3:94993909-94993928 | None:intergenic | 35.0% | |
| ATTCTGTATATTAGACCACC+AGG | + | chr3.3:94993467-94993486 | MS.gene014270:CDS | 35.0% | |
| CAAAGAAGCTGGAAATGTTA+AGG | + | chr3.3:94992938-94992957 | MS.gene014270:CDS | 35.0% | |
| CAATGATCTCGTATCTCTAT+GGG | + | chr3.3:94993505-94993524 | MS.gene014270:CDS | 35.0% | |
| CTCACTGTGTGTACATAAAA+GGG | + | chr3.3:94993810-94993829 | MS.gene014270:CDS | 35.0% | |
| GACAGCATCATATTTAATGG+AGG | - | chr3.3:94993785-94993804 | None:intergenic | 35.0% | |
| GCGTATTATATATATGCAGG+GGG | + | chr3.3:94992806-94992825 | MS.gene014270:intron | 35.0% | |
| TACGAGATCATTGAAAGACA+AGG | - | chr3.3:94993498-94993517 | None:intergenic | 35.0% | |
| TCAATGATCTCGTATCTCTA+TGG | + | chr3.3:94993504-94993523 | MS.gene014270:CDS | 35.0% | |
| TCACTGTGTGTACATAAAAG+GGG | + | chr3.3:94993811-94993830 | MS.gene014270:CDS | 35.0% | |
| TGAAAGAATCTATGTTCCAG+AGG | + | chr3.3:94993550-94993569 | MS.gene014270:CDS | 35.0% | |
| TTCTGAATTCGGAAATGATG+TGG | + | chr3.3:94993077-94993096 | MS.gene014270:CDS | 35.0% | |
| TTGCTTGACACATAAGTGTA+CGG | - | chr3.3:94993186-94993205 | None:intergenic | 35.0% | |
| ! | ACTCAAACTGATCGATTCAT+GGG | + | chr3.3:94992628-94992647 | MS.gene014270:intron | 35.0% |
| ! | AGCAAGATTTTATTGATCGG+TGG | + | chr3.3:94992414-94992433 | MS.gene014270:CDS | 35.0% |
| !! | CAGATTCTGAAGCAAATTCA+AGG | + | chr3.3:94993575-94993594 | MS.gene014270:CDS | 35.0% |
| !! | TGATGATGGATGATTTAGCA+GGG | - | chr3.3:94992530-94992549 | None:intergenic | 35.0% |
| !! | TTGATGATGGATGATTTAGC+AGG | - | chr3.3:94992531-94992550 | None:intergenic | 35.0% |
| !!! | AGCTGTTTTTAACAAGGAAG+AGG | + | chr3.3:94993391-94993410 | MS.gene014270:intron | 35.0% |
| !!! | GTGTCTAGTTTTACACCTTT+GGG | - | chr3.3:94993300-94993319 | None:intergenic | 35.0% |
| !!! | TGTCTAGTTTTACACCTTTG+GGG | - | chr3.3:94993299-94993318 | None:intergenic | 35.0% |
| !!! | TGTGTCTAGTTTTACACCTT+TGG | - | chr3.3:94993301-94993320 | None:intergenic | 35.0% |
| ACAGTGGTGTATTTCACATC+AGG | - | chr3.3:94993893-94993912 | None:intergenic | 40.0% | |
| ATGCCGTTAAAGCCAGAATT+CGG | + | chr3.3:94993136-94993155 | MS.gene014270:CDS | 40.0% | |
| CAAACCACATGTGTTAGACT+CGG | + | chr3.3:94993720-94993739 | MS.gene014270:intron | 40.0% | |
| CATCATATTTAATGGAGGCG+AGG | - | chr3.3:94993780-94993799 | None:intergenic | 40.0% | |
| CGTCAAATCCTATTCCTTTC+TGG | + | chr3.3:94992588-94992607 | MS.gene014270:intron | 40.0% | |
| GCTCACTGTGTGTACATAAA+AGG | + | chr3.3:94993809-94993828 | MS.gene014270:CDS | 40.0% | |
| GTAGCTTCTACTCCAAATGT+TGG | - | chr3.3:94993860-94993879 | None:intergenic | 40.0% | |
| TCTCTATGGGAGAAGAAGAT+TGG | + | chr3.3:94993518-94993537 | MS.gene014270:CDS | 40.0% | |
| TGATCTTGTCTTGAACACTC+AGG | - | chr3.3:94992908-94992927 | None:intergenic | 40.0% | |
| TTACATCGGAAAGTTCATGG+TGG | + | chr3.3:94992443-94992462 | MS.gene014270:CDS | 40.0% | |
| ! | ATTTTATTGATCGGTGGCAG+CGG | + | chr3.3:94992420-94992439 | MS.gene014270:CDS | 40.0% |
| ! | GACTCAAACTGATCGATTCA+TGG | + | chr3.3:94992627-94992646 | MS.gene014270:intron | 40.0% |
| ! | TTGAAAGACAAGGCATTACC+TGG | - | chr3.3:94993488-94993507 | None:intergenic | 40.0% |
| AGCTCCATGCTGTGATAAAG+AGG | - | chr3.3:94993232-94993251 | None:intergenic | 45.0% | |
| ATCTCTGCCATCAAAGAAGC+TGG | + | chr3.3:94992927-94992946 | MS.gene014270:CDS | 45.0% | |
| CATGCTGTGATAAAGAGGGT+AGG | - | chr3.3:94993227-94993246 | None:intergenic | 45.0% | |
| CGGTTACATCGGAAAGTTCA+TGG | + | chr3.3:94992440-94992459 | MS.gene014270:CDS | 45.0% | |
| CTACCCTCTTTATCACAGCA+TGG | + | chr3.3:94993225-94993244 | MS.gene014270:CDS | 45.0% | |
| GATGGATGATTTAGCAGGGT+TGG | - | chr3.3:94992526-94992545 | None:intergenic | 45.0% | |
| GCTCCATGCTGTGATAAAGA+GGG | - | chr3.3:94993231-94993250 | None:intergenic | 45.0% | |
| GGTTGGAAAGAGTTGAGTCT+CGG | - | chr3.3:94992509-94992528 | None:intergenic | 45.0% | |
| GTGTCAAGCAACTACTTTGC+TGG | + | chr3.3:94993195-94993214 | MS.gene014270:CDS | 45.0% | |
| TGCTTCAGAATCTGTTCCTC+TGG | - | chr3.3:94993569-94993588 | None:intergenic | 45.0% | |
| TGGTACTGTGTTCGATTCCT+GGG | - | chr3.3:94993649-94993668 | None:intergenic | 45.0% | |
| ! | AAAGACAAGGCATTACCTGG+TGG | - | chr3.3:94993485-94993504 | None:intergenic | 45.0% |
| ACCACATGTGTTAGACTCGG+TGG | + | chr3.3:94993723-94993742 | MS.gene014270:intron | 50.0% | |
| ACCACCGAGTCTAACACATG+TGG | - | chr3.3:94993727-94993746 | None:intergenic | 50.0% | |
| ACGGCATATGCACTCTTTGC+TGG | - | chr3.3:94993123-94993142 | None:intergenic | 50.0% | |
| CTAGGAGATGGAAACCCCAA+AGG | + | chr3.3:94993282-94993301 | MS.gene014270:CDS | 50.0% | |
| GAGTTGAGTCTCGGATGAGA+AGG | - | chr3.3:94992500-94992519 | None:intergenic | 50.0% | |
| GGATGAGAAGGAAGGTTGGA+TGG | - | chr3.3:94992488-94992507 | None:intergenic | 50.0% | |
| GTGGTACTGTGTTCGATTCC+TGG | - | chr3.3:94993650-94993669 | None:intergenic | 50.0% | |
| TCTCGGATGAGAAGGAAGGT+TGG | - | chr3.3:94992492-94992511 | None:intergenic | 50.0% | |
| TGAGTCTCGGATGAGAAGGA+AGG | - | chr3.3:94992496-94992515 | None:intergenic | 50.0% | |
| ! | ACACATGTGGTTTGTGTGCG+TGG | - | chr3.3:94993714-94993733 | None:intergenic | 50.0% |
| ! | ACATGTGGTTTGTGTGCGTG+GGG | - | chr3.3:94993712-94993731 | None:intergenic | 50.0% |
| ! | CACATGTGGTTTGTGTGCGT+GGG | - | chr3.3:94993713-94993732 | None:intergenic | 50.0% |
| !! | CTTTGGGGTTTCCATCTCCT+AGG | - | chr3.3:94993284-94993303 | None:intergenic | 50.0% |
| !! | GCGCCGAATTCTGGCTTTAA+CGG | - | chr3.3:94993142-94993161 | None:intergenic | 50.0% |
| ATCGGTGGCAGCGGTTACAT+CGG | + | chr3.3:94992429-94992448 | MS.gene014270:CDS | 55.0% | |
| CAGAATTCGGCGCAGCATTG+AGG | + | chr3.3:94993149-94993168 | MS.gene014270:CDS | 55.0% | |
| CTCAATGCTGCGCCGAATTC+TGG | - | chr3.3:94993151-94993170 | None:intergenic | 55.0% | |
| GTGGAAGCTAGCGTCAAAGC+TGG | + | chr3.3:94992462-94992481 | MS.gene014270:CDS | 55.0% | |
| ! | ATGTGGTTTGTGTGCGTGGG+GGG | - | chr3.3:94993710-94993729 | None:intergenic | 55.0% |
| ! | CATGTGGTTTGTGTGCGTGG+GGG | - | chr3.3:94993711-94993730 | None:intergenic | 55.0% |
| !! | GGGGGGTGTTGTAAATCTCG+TGG | - | chr3.3:94993669-94993688 | None:intergenic | 55.0% |
| ! | TGTGGTTTGTGTGCGTGGGG+GGG | - | chr3.3:94993709-94993728 | None:intergenic | 60.0% |
| ! | CGGCGCAGCATTGAGGCAGA+AGG | + | chr3.3:94993156-94993175 | MS.gene014270:CDS | 65.0% |
| ! | GTGGTTTGTGTGCGTGGGGG+GGG | - | chr3.3:94993708-94993727 | None:intergenic | 65.0% |
| ! | TGGTTTGTGTGCGTGGGGGG+GGG | - | chr3.3:94993707-94993726 | None:intergenic | 65.0% |
| GGTTTGTGTGCGTGGGGGGG+GGG | - | chr3.3:94993706-94993725 | None:intergenic | 70.0% | |
| GTTTGTGTGCGTGGGGGGGG+GGG | - | chr3.3:94993705-94993724 | None:intergenic | 70.0% | |
| TTTGTGTGCGTGGGGGGGGG+GGG | - | chr3.3:94993704-94993723 | None:intergenic | 70.0% | |
| TTGTGTGCGTGGGGGGGGGG+GGG | - | chr3.3:94993703-94993722 | None:intergenic | 75.0% | |
| ! | TGTGTGCGTGGGGGGGGGGG+GGG | - | chr3.3:94993702-94993721 | None:intergenic | 80.0% |
| ! | GTGTGCGTGGGGGGGGGGGG+GGG | - | chr3.3:94993701-94993720 | None:intergenic | 85.0% |
| ! | TGTGCGTGGGGGGGGGGGGG+GGG | - | chr3.3:94993700-94993719 | None:intergenic | 85.0% |
| ! | GTGCGTGGGGGGGGGGGGGG+GGG | - | chr3.3:94993699-94993718 | None:intergenic | 90.0% |
| ! | TGCGTGGGGGGGGGGGGGGG+GGG | - | chr3.3:94993698-94993717 | None:intergenic | 90.0% |
| ! | CGTGGGGGGGGGGGGGGGGG+GGG | - | chr3.3:94993696-94993715 | None:intergenic | 95.0% |
| ! | GCGTGGGGGGGGGGGGGGGG+GGG | - | chr3.3:94993697-94993716 | None:intergenic | 95.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | - | chr3.3:94993695-94993714 | None:intergenic | 95.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr3.3:94993694-94993713 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 94992390 | 94993940 | 94992390 | ID=MS.gene014270 |
| chr3.3 | mRNA | 94992390 | 94993940 | 94992390 | ID=MS.gene014270.t1;Parent=MS.gene014270 |
| chr3.3 | exon | 94992390 | 94992584 | 94992390 | ID=MS.gene014270.t1.exon1;Parent=MS.gene014270.t1 |
| chr3.3 | CDS | 94992390 | 94992584 | 94992390 | ID=cds.MS.gene014270.t1;Parent=MS.gene014270.t1 |
| chr3.3 | exon | 94992825 | 94992959 | 94992825 | ID=MS.gene014270.t1.exon2;Parent=MS.gene014270.t1 |
| chr3.3 | CDS | 94992825 | 94992959 | 94992825 | ID=cds.MS.gene014270.t1;Parent=MS.gene014270.t1 |
| chr3.3 | exon | 94993066 | 94993303 | 94993066 | ID=MS.gene014270.t1.exon3;Parent=MS.gene014270.t1 |
| chr3.3 | CDS | 94993066 | 94993303 | 94993066 | ID=cds.MS.gene014270.t1;Parent=MS.gene014270.t1 |
| chr3.3 | exon | 94993393 | 94993596 | 94993393 | ID=MS.gene014270.t1.exon4;Parent=MS.gene014270.t1 |
| chr3.3 | CDS | 94993393 | 94993596 | 94993393 | ID=cds.MS.gene014270.t1;Parent=MS.gene014270.t1 |
| chr3.3 | exon | 94993774 | 94993940 | 94993774 | ID=MS.gene014270.t1.exon5;Parent=MS.gene014270.t1 |
| chr3.3 | CDS | 94993774 | 94993940 | 94993774 | ID=cds.MS.gene014270.t1;Parent=MS.gene014270.t1 |
| Gene Sequence |
| Protein sequence |
