Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003737.t1 | XP_003606937.1 | 96.9 | 254 | 8 | 0 | 1 | 254 | 1 | 254 | 2.10E-134 | 488.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003737.t1 | O65679 | 61.4 | 254 | 91 | 2 | 2 | 255 | 6 | 252 | 3.4e-85 | 316.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003737.t1 | G7JHC4 | 96.9 | 254 | 8 | 0 | 1 | 254 | 1 | 254 | 1.5e-134 | 488.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68805 | MS.gene003737 | PPI |
| MS.gene014270 | MS.gene003737 | PPI |
| MS.gene68212 | MS.gene003737 | PPI |
| MS.gene063157 | MS.gene003737 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003737.t1 | MTR_4g070360 | 96.850 | 254 | 8 | 0 | 1 | 254 | 1 | 254 | 0.0 | 504 |
| MS.gene003737.t1 | MTR_3g111990 | 50.198 | 253 | 124 | 1 | 3 | 255 | 4 | 254 | 5.69e-88 | 264 |
| MS.gene003737.t1 | MTR_5g020740 | 51.181 | 254 | 122 | 1 | 2 | 255 | 4 | 255 | 1.61e-86 | 260 |
| MS.gene003737.t1 | MTR_3g111980 | 50.000 | 256 | 124 | 2 | 2 | 255 | 3 | 256 | 7.24e-85 | 256 |
| MS.gene003737.t1 | MTR_3g116840 | 49.603 | 252 | 125 | 1 | 4 | 255 | 9 | 258 | 1.45e-84 | 255 |
| MS.gene003737.t1 | MTR_4g070370 | 46.693 | 257 | 131 | 3 | 1 | 255 | 5 | 257 | 1.12e-76 | 236 |
| MS.gene003737.t1 | MTR_4g070340 | 43.254 | 252 | 141 | 1 | 4 | 255 | 7 | 256 | 6.97e-71 | 221 |
| MS.gene003737.t1 | MTR_5g027240 | 43.629 | 259 | 140 | 2 | 1 | 254 | 1 | 258 | 6.97e-67 | 210 |
| MS.gene003737.t1 | MTR_5g020760 | 40.684 | 263 | 143 | 3 | 3 | 254 | 4 | 264 | 9.75e-67 | 208 |
| MS.gene003737.t1 | MTR_5g027290 | 42.910 | 268 | 147 | 2 | 1 | 263 | 1 | 267 | 2.08e-66 | 209 |
| MS.gene003737.t1 | MTR_5g020760 | 40.530 | 264 | 144 | 3 | 3 | 255 | 4 | 265 | 2.81e-66 | 209 |
| MS.gene003737.t1 | MTR_5g020800 | 40.530 | 264 | 144 | 3 | 3 | 255 | 4 | 265 | 3.30e-66 | 209 |
| MS.gene003737.t1 | MTR_4g070340 | 42.063 | 252 | 139 | 2 | 4 | 255 | 7 | 251 | 6.36e-66 | 208 |
| MS.gene003737.t1 | MTR_8g071130 | 42.085 | 259 | 144 | 2 | 1 | 254 | 1 | 258 | 1.09e-63 | 202 |
| MS.gene003737.t1 | MTR_4g070340 | 41.951 | 205 | 117 | 1 | 51 | 255 | 5 | 207 | 1.51e-53 | 175 |
| MS.gene003737.t1 | MTR_1g093720 | 35.573 | 253 | 156 | 4 | 1 | 250 | 11 | 259 | 3.40e-50 | 168 |
| MS.gene003737.t1 | MTR_3g008100 | 35.200 | 250 | 155 | 4 | 3 | 251 | 5 | 248 | 1.73e-47 | 160 |
| MS.gene003737.t1 | MTR_3g008140 | 34.783 | 253 | 154 | 5 | 2 | 251 | 4 | 248 | 2.02e-47 | 160 |
| MS.gene003737.t1 | MTR_3g007970 | 34.400 | 250 | 157 | 4 | 3 | 251 | 5 | 248 | 4.40e-46 | 157 |
| MS.gene003737.t1 | MTR_3g008100 | 34.000 | 250 | 151 | 4 | 3 | 251 | 5 | 241 | 2.21e-44 | 152 |
| MS.gene003737.t1 | MTR_3g008100 | 32.620 | 187 | 119 | 4 | 3 | 188 | 5 | 185 | 2.24e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003737.t1 | AT4G34540 | 61.417 | 254 | 91 | 2 | 2 | 255 | 6 | 252 | 1.78e-112 | 326 |
| MS.gene003737.t1 | AT1G75280 | 52.344 | 256 | 118 | 2 | 2 | 255 | 4 | 257 | 3.64e-90 | 270 |
| MS.gene003737.t1 | AT1G75290 | 50.781 | 256 | 122 | 2 | 2 | 255 | 4 | 257 | 2.17e-88 | 265 |
| MS.gene003737.t1 | AT1G75290 | 50.781 | 256 | 122 | 2 | 2 | 255 | 31 | 284 | 5.93e-88 | 265 |
| MS.gene003737.t1 | AT4G39230 | 50.199 | 251 | 123 | 1 | 3 | 253 | 4 | 252 | 7.65e-88 | 263 |
| MS.gene003737.t1 | AT1G75300 | 47.212 | 269 | 124 | 3 | 2 | 254 | 4 | 270 | 1.66e-82 | 250 |
| MS.gene003737.t1 | AT1G19540 | 48.235 | 255 | 126 | 3 | 4 | 254 | 3 | 255 | 7.51e-76 | 231 |
| MS.gene003737.t1 | AT1G19540 | 48.062 | 258 | 128 | 3 | 4 | 257 | 3 | 258 | 1.51e-75 | 232 |
| MS.gene003737.t1 | AT1G32100 | 38.697 | 261 | 154 | 2 | 2 | 257 | 8 | 267 | 1.99e-57 | 186 |
| MS.gene003737.t1 | AT4G13660 | 39.382 | 259 | 151 | 2 | 2 | 255 | 8 | 265 | 3.03e-57 | 186 |
| MS.gene003737.t1 | AT4G13660 | 39.382 | 259 | 151 | 2 | 2 | 255 | 8 | 265 | 3.03e-57 | 186 |
Find 60 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTGCCTAATTTCAATTT+TGG | 0.127382 | 4.1:-32542922 | None:intergenic |
| GAGAAAGACATTGAAGTTTA+TGG | 0.194364 | 4.1:-32541447 | None:intergenic |
| AGATTCATCCCATCTGAATT+TGG | 0.243941 | 4.1:+32542840 | MS.gene003737:CDS |
| GAGATATGGGAAACTAAAAT+AGG | 0.244528 | 4.1:+32543287 | MS.gene003737:CDS |
| TGAGACTTGATTCTGCTAAA+TGG | 0.268346 | 4.1:-32541363 | None:intergenic |
| TTCAAAGAACAAACATTTCC+TGG | 0.311587 | 4.1:-32543254 | None:intergenic |
| ATGCACCCAAAATTGAAATT+AGG | 0.315985 | 4.1:+32542916 | MS.gene003737:CDS |
| AGGGACGAAGTCACAATATT+TGG | 0.316027 | 4.1:+32543044 | MS.gene003737:CDS |
| AGAAAGACATTGAAGTTTAT+GGG | 0.319968 | 4.1:-32541446 | None:intergenic |
| AAAAGCAAGATATTGATAAT+TGG | 0.354025 | 4.1:+32541319 | MS.gene003737:CDS |
| TGAATGAGCTGGTTGAGATA+TGG | 0.375861 | 4.1:+32543273 | MS.gene003737:CDS |
| TGAAGTTTATGGGATTTGAT+TGG | 0.388364 | 4.1:-32541436 | None:intergenic |
| TTATCTGTTAAGACTTTAAG+AGG | 0.391320 | 4.1:+32544085 | MS.gene003737:intron |
| CTAGGAGGAGCTTTCAATCC+TGG | 0.420339 | 4.1:-32543023 | None:intergenic |
| GAATGAGCTGGTTGAGATAT+GGG | 0.421530 | 4.1:+32543274 | MS.gene003737:CDS |
| GGGATCGTCAACCGCATTGA+TGG | 0.428160 | 4.1:-32543198 | None:intergenic |
| CTTCCTTCTCTTGTTCAACC+AGG | 0.436686 | 4.1:+32543005 | MS.gene003737:CDS |
| CAAACAACTTGGTTCTATCA+AGG | 0.437457 | 4.1:+32541690 | MS.gene003737:CDS |
| CAAAACTTTATTCAAAGTGC+GGG | 0.443000 | 4.1:-32543219 | None:intergenic |
| AATTGTAGGTGTATTTATGC+AGG | 0.443217 | 4.1:+32543154 | MS.gene003737:intron |
| TACAGCAAAAGCTACTCATC+CGG | 0.449081 | 4.1:+32541662 | MS.gene003737:CDS |
| CAGGATTGAAAGCTCCTCCT+AGG | 0.466026 | 4.1:+32543024 | MS.gene003737:CDS |
| CTTCAATGTCTTTCTCATGC+TGG | 0.474364 | 4.1:+32541454 | MS.gene003737:CDS |
| ATATTGATAATTGGTGCAAC+GGG | 0.477148 | 4.1:+32541328 | MS.gene003737:CDS |
| CTCTAACAAGAGCAAATGTT+GGG | 0.483286 | 4.1:-32541396 | None:intergenic |
| TGTTAAGACTTTAAGAGGCA+TGG | 0.483389 | 4.1:+32544090 | MS.gene003737:intron |
| ATTGGTGCAACGGGAAGTCT+TGG | 0.488303 | 4.1:+32541337 | MS.gene003737:CDS |
| AGATATGGGAAACTAAAATA+GGG | 0.489971 | 4.1:+32543288 | MS.gene003737:CDS |
| TCTCTAACAAGAGCAAATGT+TGG | 0.501646 | 4.1:-32541397 | None:intergenic |
| TTTGGTGACGGCAATACAAA+AGG | 0.507552 | 4.1:+32543062 | MS.gene003737:CDS |
| GATATTGATAATTGGTGCAA+CGG | 0.523861 | 4.1:+32541327 | MS.gene003737:CDS |
| AATCCTGGTTGAACAAGAGA+AGG | 0.535054 | 4.1:-32543008 | None:intergenic |
| AACCAAGTTGTTTGATAACC+CGG | 0.535224 | 4.1:-32541681 | None:intergenic |
| AATTGAAATTAGGCAACTTG+TGG | 0.541470 | 4.1:+32542926 | MS.gene003737:CDS |
| AAGTTCACATACTTTAGCCT+TGG | 0.542851 | 4.1:-32542874 | None:intergenic |
| ATCCGGGTTATCAAACAACT+TGG | 0.550903 | 4.1:+32541679 | MS.gene003737:CDS |
| TGTTTGTTCTTTGAATGAGC+TGG | 0.551475 | 4.1:+32543262 | MS.gene003737:CDS |
| GGATCTGAGCCAAATTCAGA+TGG | 0.556972 | 4.1:-32542849 | None:intergenic |
| GGCTAAAGTATGTGAACTTG+AGG | 0.561289 | 4.1:+32542878 | MS.gene003737:CDS |
| AATATTGTGACTTCGTCCCT+AGG | 0.562347 | 4.1:-32543041 | None:intergenic |
| TCACATACTTTAGCCTTGGT+AGG | 0.568317 | 4.1:-32542870 | None:intergenic |
| CAGAGAATGATACTTTGAGA+AGG | 0.573309 | 4.1:-32541483 | None:intergenic |
| TTGCAGGAGATGATAGTATG+TGG | 0.574762 | 4.1:-32542963 | None:intergenic |
| ACAAAACTTTATTCAAAGTG+CGG | 0.576912 | 4.1:-32543220 | None:intergenic |
| AGGATTGAAAGCTCCTCCTA+GGG | 0.588865 | 4.1:+32543025 | MS.gene003737:CDS |
| ACAGCAAAAGCTACTCATCC+GGG | 0.590053 | 4.1:+32541663 | MS.gene003737:CDS |
| GAGCTGCTTGAGAAAATCAA+AGG | 0.590625 | 4.1:+32543344 | MS.gene003737:CDS |
| AAAGTATGTGAACTTGAGGA+TGG | 0.599062 | 4.1:+32542882 | MS.gene003737:CDS |
| AGGCAACTTGTGGAAGCTGA+AGG | 0.602341 | 4.1:+32542936 | MS.gene003737:CDS |
| AGAGAATGATACTTTGAGAA+GGG | 0.615697 | 4.1:-32541482 | None:intergenic |
| AGATGAAGCAAGCCTTGTTG+AGG | 0.621736 | 4.1:+32541588 | MS.gene003737:CDS |
| AAAACTTTATTCAAAGTGCG+GGG | 0.639558 | 4.1:-32543218 | None:intergenic |
| CTAACTTCACAGCCTCAACA+AGG | 0.643328 | 4.1:-32541600 | None:intergenic |
| GAAGTCACAATATTTGGTGA+CGG | 0.659254 | 4.1:+32543050 | MS.gene003737:CDS |
| GATCTGAGCCAAATTCAGAT+GGG | 0.661245 | 4.1:-32542848 | None:intergenic |
| AAATAGGGAAGAAACTTGAG+AGG | 0.666892 | 4.1:+32543303 | MS.gene003737:CDS |
| ATTGTGACTTCGTCCCTAGG+AGG | 0.671960 | 4.1:-32543038 | None:intergenic |
| AAAGAACAAACATTTCCTGG+AGG | 0.691831 | 4.1:-32543251 | None:intergenic |
| TGCTGCTTTCACCATCAATG+CGG | 0.712003 | 4.1:+32543187 | MS.gene003737:CDS |
| ATTTGGCTCAGATCCTACCA+AGG | 0.716779 | 4.1:+32542857 | MS.gene003737:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAGAATATTAATTAATTT+AGG | + | chr4.1:32542571-32542590 | MS.gene003737:intron | 10.0% |
| !! | ATATATTGTTATAGATATTA+TGG | + | chr4.1:32542112-32542131 | MS.gene003737:intron | 10.0% |
| !! | CTAGAATATTAATTAATTTA+GGG | + | chr4.1:32542572-32542591 | MS.gene003737:intron | 10.0% |
| !! | TATCTATAACAATATATAAA+AGG | - | chr4.1:32542109-32542128 | None:intergenic | 10.0% |
| !! | TCAATTTATAGAAATATAAT+AGG | - | chr4.1:32542633-32542652 | None:intergenic | 10.0% |
| !!! | CTTTTGTTTATAATAAATTA+AGG | + | chr4.1:32542699-32542718 | MS.gene003737:intron | 10.0% |
| !!! | TTAATAAGAATTGAATTTTT+AGG | + | chr4.1:32543678-32543697 | MS.gene003737:intron | 10.0% |
| !!! | TTATCATATTTTTATAGTTT+AGG | - | chr4.1:32542440-32542459 | None:intergenic | 10.0% |
| !! | ATCTATAAGCTTATATATAA+GGG | + | chr4.1:32543961-32543980 | MS.gene003737:intron | 15.0% |
| !! | TATCTATAAGCTTATATATA+AGG | + | chr4.1:32543960-32543979 | MS.gene003737:intron | 15.0% |
| !!! | AACAACTATAATTTTTAAGA+AGG | + | chr4.1:32543472-32543491 | MS.gene003737:intron | 15.0% |
| !! | AAAAACCATAAGAATTTGAA+GGG | - | chr4.1:32541736-32541755 | None:intergenic | 20.0% |
| !! | AATAAAAAATTCAGCTCAAA+AGG | + | chr4.1:32542077-32542096 | MS.gene003737:intron | 20.0% |
| !! | ATAAAAAATTCAGCTCAAAA+GGG | + | chr4.1:32542078-32542097 | MS.gene003737:intron | 20.0% |
| !! | ATATATGTGATATATCCTAA+TGG | - | chr4.1:32542362-32542381 | None:intergenic | 20.0% |
| !! | ATATGTTCAGAATAATTCAT+AGG | - | chr4.1:32544054-32544073 | None:intergenic | 20.0% |
| !! | CTATAAAAATATGATAAGTC+AGG | + | chr4.1:32542443-32542462 | MS.gene003737:intron | 20.0% |
| !! | TAAAAACCATAAGAATTTGA+AGG | - | chr4.1:32541737-32541756 | None:intergenic | 20.0% |
| !! | TTCAATAAAAATAAGGGAAA+AGG | - | chr4.1:32543714-32543733 | None:intergenic | 20.0% |
| !!! | AAAAGCAAGATATTGATAAT+TGG | + | chr4.1:32541319-32541338 | MS.gene003737:CDS | 20.0% |
| !!! | AACTATAATTTTTAAGAAGG+CGG | + | chr4.1:32543475-32543494 | MS.gene003737:intron | 20.0% |
| !!! | ATTCTAGTTCTTATCTTTAA+AGG | - | chr4.1:32542559-32542578 | None:intergenic | 20.0% |
| !!! | ATTTGTTTGTTAACATTTGT+TGG | + | chr4.1:32542811-32542830 | MS.gene003737:intron | 20.0% |
| !!! | TTTTGAAAATATTGAATTGC+AGG | - | chr4.1:32543913-32543932 | None:intergenic | 20.0% |
| ! | ACAAAACTTTATTCAAAGTG+CGG | - | chr4.1:32543223-32543242 | None:intergenic | 25.0% |
| ! | AGAAAGACATTGAAGTTTAT+GGG | - | chr4.1:32541449-32541468 | None:intergenic | 25.0% |
| ! | AGATATGGGAAACTAAAATA+GGG | + | chr4.1:32543288-32543307 | MS.gene003737:CDS | 25.0% |
| ! | GGATTATTAAATGTTCATGT+AGG | - | chr4.1:32542740-32542759 | None:intergenic | 25.0% |
| ! | GTTAGAATATGTTGTTCATT+AGG | + | chr4.1:32541815-32541834 | MS.gene003737:intron | 25.0% |
| ! | TAATTTAGGGACTAAGTTTA+TGG | + | chr4.1:32542585-32542604 | MS.gene003737:intron | 25.0% |
| ! | TCTATAAATTGAAGAGTGAT+AGG | + | chr4.1:32542641-32542660 | MS.gene003737:intron | 25.0% |
| ! | TGCCAGTTCAATAAAAATAA+GGG | - | chr4.1:32543720-32543739 | None:intergenic | 25.0% |
| ! | TGTGCTTTATGTATTCAAAT+AGG | - | chr4.1:32542761-32542780 | None:intergenic | 25.0% |
| ! | TGTGGAATATACTATCAATT+TGG | - | chr4.1:32542673-32542692 | None:intergenic | 25.0% |
| ! | TTAAAAGGCAAATTATACAG+TGG | - | chr4.1:32543879-32543898 | None:intergenic | 25.0% |
| ! | TTAAATCAGAATGACTTTAC+AGG | - | chr4.1:32543998-32544017 | None:intergenic | 25.0% |
| ! | TTATCTGTTAAGACTTTAAG+AGG | + | chr4.1:32544085-32544104 | MS.gene003737:intron | 25.0% |
| ! | TTTAACCCTTCAAATTCTTA+TGG | + | chr4.1:32541728-32541747 | MS.gene003737:intron | 25.0% |
| !! | AAGTTGCCTAATTTCAATTT+TGG | - | chr4.1:32542925-32542944 | None:intergenic | 25.0% |
| !! | AATTTTCATAAAGAAGTTGC+AGG | - | chr4.1:32542982-32543001 | None:intergenic | 25.0% |
| !! | AGTTGCCTAATTTCAATTTT+GGG | - | chr4.1:32542924-32542943 | None:intergenic | 25.0% |
| !! | CTTATCTTTAAAGGAATTGA+TGG | - | chr4.1:32542550-32542569 | None:intergenic | 25.0% |
| !! | TCCAAATTTTTACTTTCGTT+CGG | + | chr4.1:32541890-32541909 | MS.gene003737:intron | 25.0% |
| !! | TTGGATTGATTTCTACATAA+TGG | - | chr4.1:32544025-32544044 | None:intergenic | 25.0% |
| !!! | AAATTTTAAGTACCAATCCA+AGG | + | chr4.1:32543832-32543851 | MS.gene003737:intron | 25.0% |
| !!! | AAGCTCTGGAAAAATAAAAT+TGG | - | chr4.1:32543113-32543132 | None:intergenic | 25.0% |
| !!! | AATAATTCATAGGCTTTGTT+TGG | - | chr4.1:32544044-32544063 | None:intergenic | 25.0% |
| !!! | ACTATAATTTTTAAGAAGGC+GGG | + | chr4.1:32543476-32543495 | MS.gene003737:intron | 25.0% |
| !!! | ATATACTTTTTCAGCTAACA+AGG | - | chr4.1:32541790-32541809 | None:intergenic | 25.0% |
| !!! | ATTTTTTAAGTGTCAAACCA+AGG | - | chr4.1:32543538-32543557 | None:intergenic | 25.0% |
| !!! | TGGTTGATATTTTATGTACA+GGG | + | chr4.1:32541556-32541575 | MS.gene003737:intron | 25.0% |
| !!! | TTCCCTTATTTTTATTGAAC+TGG | + | chr4.1:32543715-32543734 | MS.gene003737:intron | 25.0% |
| AAAACTTTATTCAAAGTGCG+GGG | - | chr4.1:32543221-32543240 | None:intergenic | 30.0% | |
| AAACCATTACCACTTGTTTA+AGG | + | chr4.1:32542252-32542271 | MS.gene003737:intron | 30.0% | |
| AAACTTCTCAAAAGATTCTC+AGG | + | chr4.1:32543423-32543442 | MS.gene003737:intron | 30.0% | |
| AACTTCTCAAAAGATTCTCA+GGG | + | chr4.1:32543424-32543443 | MS.gene003737:intron | 30.0% | |
| AATCATGAATAAGTAAGCTC+TGG | - | chr4.1:32543127-32543146 | None:intergenic | 30.0% | |
| AATTGAAATTAGGCAACTTG+TGG | + | chr4.1:32542926-32542945 | MS.gene003737:CDS | 30.0% | |
| AATTGTAGGTGTATTTATGC+AGG | + | chr4.1:32543154-32543173 | MS.gene003737:intron | 30.0% | |
| AGAGAAAGAACGATAGTTTA+AGG | - | chr4.1:32542408-32542427 | None:intergenic | 30.0% | |
| AGAGCTTACTTATTCATGAT+TGG | + | chr4.1:32543126-32543145 | MS.gene003737:intron | 30.0% | |
| ATGCACCCAAAATTGAAATT+AGG | + | chr4.1:32542916-32542935 | MS.gene003737:CDS | 30.0% | |
| ATGTGATATATCCTAATGGA+AGG | - | chr4.1:32542358-32542377 | None:intergenic | 30.0% | |
| CAAAACTTTATTCAAAGTGC+GGG | - | chr4.1:32543222-32543241 | None:intergenic | 30.0% | |
| CAAATAACAAGTATCAGCTA+TGG | - | chr4.1:32541862-32541881 | None:intergenic | 30.0% | |
| CAGGAACAAAACTACTTAAA+AGG | - | chr4.1:32543894-32543913 | None:intergenic | 30.0% | |
| CATTTAGAAGTAGAAGTTCA+TGG | + | chr4.1:32543590-32543609 | MS.gene003737:intron | 30.0% | |
| CTATACGAATGCTATATTGT+TGG | - | chr4.1:32542028-32542047 | None:intergenic | 30.0% | |
| CTGAAACTCTAAACAATGTT+TGG | + | chr4.1:32543561-32543580 | MS.gene003737:intron | 30.0% | |
| CTTATAGAAGTAGAAACTCA+CGG | - | chr4.1:32543782-32543801 | None:intergenic | 30.0% | |
| GAAGATTAATCACTACCAAA+CGG | - | chr4.1:32542155-32542174 | None:intergenic | 30.0% | |
| GAGAAAGACATTGAAGTTTA+TGG | - | chr4.1:32541450-32541469 | None:intergenic | 30.0% | |
| GAGATATGGGAAACTAAAAT+AGG | + | chr4.1:32543287-32543306 | MS.gene003737:CDS | 30.0% | |
| GTGCCAGTTCAATAAAAATA+AGG | - | chr4.1:32543721-32543740 | None:intergenic | 30.0% | |
| TATGATAAGTCAGGACTAAT+CGG | + | chr4.1:32542452-32542471 | MS.gene003737:intron | 30.0% | |
| TATGGACCGAAAATAGTTTA+GGG | + | chr4.1:32542603-32542622 | MS.gene003737:intron | 30.0% | |
| TGAAGTTTATGGGATTTGAT+TGG | - | chr4.1:32541439-32541458 | None:intergenic | 30.0% | |
| TGTGATATATCCTAATGGAA+GGG | - | chr4.1:32542357-32542376 | None:intergenic | 30.0% | |
| TTATGGACCGAAAATAGTTT+AGG | + | chr4.1:32542602-32542621 | MS.gene003737:intron | 30.0% | |
| TTCAAAGAACAAACATTTCC+TGG | - | chr4.1:32543257-32543276 | None:intergenic | 30.0% | |
| ! | AGAGAATGATACTTTGAGAA+GGG | - | chr4.1:32541485-32541504 | None:intergenic | 30.0% |
| ! | ATATTGATAATTGGTGCAAC+GGG | + | chr4.1:32541328-32541347 | MS.gene003737:CDS | 30.0% |
| ! | CCAAATTTTTACTTTCGTTC+GGG | + | chr4.1:32541891-32541910 | MS.gene003737:intron | 30.0% |
| ! | GATATTGATAATTGGTGCAA+CGG | + | chr4.1:32541327-32541346 | MS.gene003737:CDS | 30.0% |
| ! | TATAAACAAAAGCACACATG+TGG | - | chr4.1:32542691-32542710 | None:intergenic | 30.0% |
| !! | GCTGATACTTGTTATTTGTT+AGG | + | chr4.1:32541864-32541883 | MS.gene003737:intron | 30.0% |
| !! | GTAGTCTTATCTAATTCTTG+TGG | + | chr4.1:32541536-32541555 | MS.gene003737:intron | 30.0% |
| !! | GTGGTTGATATTTTATGTAC+AGG | + | chr4.1:32541555-32541574 | MS.gene003737:intron | 30.0% |
| !! | TCATAATGCACTGATTCATA+AGG | - | chr4.1:32543386-32543405 | None:intergenic | 30.0% |
| !!! | CATGATTGGTTTTGAATTGT+AGG | + | chr4.1:32543140-32543159 | MS.gene003737:intron | 30.0% |
| AAAAGGTCTTTACTTGATCG+AGG | + | chr4.1:32543079-32543098 | MS.gene003737:intron | 35.0% | |
| AAAGAACAAACATTTCCTGG+AGG | - | chr4.1:32543254-32543273 | None:intergenic | 35.0% | |
| AAAGTATGTGAACTTGAGGA+TGG | + | chr4.1:32542882-32542901 | MS.gene003737:CDS | 35.0% | |
| AAATAGGGAAGAAACTTGAG+AGG | + | chr4.1:32543303-32543322 | MS.gene003737:CDS | 35.0% | |
| AAATTGAAGAGTGATAGGCA+GGG | + | chr4.1:32542646-32542665 | MS.gene003737:intron | 35.0% | |
| AAGTTCACATACTTTAGCCT+TGG | - | chr4.1:32542877-32542896 | None:intergenic | 35.0% | |
| ACACCTTAAACAAGTGGTAA+TGG | - | chr4.1:32542258-32542277 | None:intergenic | 35.0% | |
| ACTTAAGAGCTAAATGAGAG+AGG | - | chr4.1:32543937-32543956 | None:intergenic | 35.0% | |
| AGATTCATCCCATCTGAATT+TGG | + | chr4.1:32542840-32542859 | MS.gene003737:CDS | 35.0% | |
| ATGTGTACCCAATAAGTACT+CGG | - | chr4.1:32542180-32542199 | None:intergenic | 35.0% | |
| CCCGAACGAAAGTAAAAATT+TGG | - | chr4.1:32541894-32541913 | None:intergenic | 35.0% | |
| CGTGAGTTTCTACTTCTATA+AGG | + | chr4.1:32543780-32543799 | MS.gene003737:intron | 35.0% | |
| CTCTAACAAGAGCAAATGTT+GGG | - | chr4.1:32541399-32541418 | None:intergenic | 35.0% | |
| GGAGAAAACTTTGTTGAGAT+TGG | - | chr4.1:32542213-32542232 | None:intergenic | 35.0% | |
| TAAATTGAAGAGTGATAGGC+AGG | + | chr4.1:32542645-32542664 | MS.gene003737:intron | 35.0% | |
| TAATCACTACCAAACGGTAT+CGG | - | chr4.1:32542149-32542168 | None:intergenic | 35.0% | |
| TCTCTAACAAGAGCAAATGT+TGG | - | chr4.1:32541400-32541419 | None:intergenic | 35.0% | |
| TGAGACTTGATTCTGCTAAA+TGG | - | chr4.1:32541366-32541385 | None:intergenic | 35.0% | |
| TGTTTGTTCTTTGAATGAGC+TGG | + | chr4.1:32543262-32543281 | MS.gene003737:CDS | 35.0% | |
| ! | AACCAAGTTGTTTGATAACC+CGG | - | chr4.1:32541684-32541703 | None:intergenic | 35.0% |
| ! | CAGAGAATGATACTTTGAGA+AGG | - | chr4.1:32541486-32541505 | None:intergenic | 35.0% |
| ! | CTTACATTTTCCCTTCCATT+AGG | + | chr4.1:32542344-32542363 | MS.gene003737:intron | 35.0% |
| ! | GAAGTCACAATATTTGGTGA+CGG | + | chr4.1:32543050-32543069 | MS.gene003737:CDS | 35.0% |
| ! | GGTAGTCCCTAAACTATTTT+CGG | - | chr4.1:32542612-32542631 | None:intergenic | 35.0% |
| ! | TGTTAAGACTTTAAGAGGCA+TGG | + | chr4.1:32544090-32544109 | MS.gene003737:intron | 35.0% |
| ! | TTCATGTAGGTTGAGTTTCA+AGG | - | chr4.1:32542727-32542746 | None:intergenic | 35.0% |
| !! | ATACAGTGGACTACTTTGAT+AGG | - | chr4.1:32543865-32543884 | None:intergenic | 35.0% |
| !! | CAAACAACTTGGTTCTATCA+AGG | + | chr4.1:32541690-32541709 | MS.gene003737:CDS | 35.0% |
| !! | TTTTAAGTACCAATCCAAGG+TGG | + | chr4.1:32543835-32543854 | MS.gene003737:intron | 35.0% |
| !!! | ACTTTTTCAGCTAACAAGGT+CGG | - | chr4.1:32541786-32541805 | None:intergenic | 35.0% |
| !!! | CTTGTTTTTGTCAACTTGCA+CGG | - | chr4.1:32543652-32543671 | None:intergenic | 35.0% |
| AATATTGTGACTTCGTCCCT+AGG | - | chr4.1:32543044-32543063 | None:intergenic | 40.0% | |
| AATCCTGGTTGAACAAGAGA+AGG | - | chr4.1:32543011-32543030 | None:intergenic | 40.0% | |
| AGGGACGAAGTCACAATATT+TGG | + | chr4.1:32543044-32543063 | MS.gene003737:CDS | 40.0% | |
| ATCCGGGTTATCAAACAACT+TGG | + | chr4.1:32541679-32541698 | MS.gene003737:CDS | 40.0% | |
| ATCTTCCACCGAGTACTTAT+TGG | + | chr4.1:32542169-32542188 | MS.gene003737:intron | 40.0% | |
| CTATCTCAAAGGTAAAGACG+AGG | - | chr4.1:32543620-32543639 | None:intergenic | 40.0% | |
| CTTCAATGTCTTTCTCATGC+TGG | + | chr4.1:32541454-32541473 | MS.gene003737:CDS | 40.0% | |
| GAATGAGCTGGTTGAGATAT+GGG | + | chr4.1:32543274-32543293 | MS.gene003737:CDS | 40.0% | |
| GAGCTGCTTGAGAAAATCAA+AGG | + | chr4.1:32543344-32543363 | MS.gene003737:CDS | 40.0% | |
| GATAGAAAGATGGTTCACCT+TGG | + | chr4.1:32543518-32543537 | MS.gene003737:intron | 40.0% | |
| GATCTGAGCCAAATTCAGAT+GGG | - | chr4.1:32542851-32542870 | None:intergenic | 40.0% | |
| GGATCACCTTGATAGAAAGA+TGG | + | chr4.1:32543508-32543527 | MS.gene003737:intron | 40.0% | |
| GGCTAAAGTATGTGAACTTG+AGG | + | chr4.1:32542878-32542897 | MS.gene003737:CDS | 40.0% | |
| GGTGAACCATCTTTCTATCA+AGG | - | chr4.1:32543517-32543536 | None:intergenic | 40.0% | |
| TACAGCAAAAGCTACTCATC+CGG | + | chr4.1:32541662-32541681 | MS.gene003737:CDS | 40.0% | |
| TCTTCCACCGAGTACTTATT+GGG | + | chr4.1:32542170-32542189 | MS.gene003737:intron | 40.0% | |
| TGAATGAGCTGGTTGAGATA+TGG | + | chr4.1:32543273-32543292 | MS.gene003737:CDS | 40.0% | |
| TTGCAGGAGATGATAGTATG+TGG | - | chr4.1:32542966-32542985 | None:intergenic | 40.0% | |
| ! | ACCACTTGTTTAAGGTGTCT+CGG | + | chr4.1:32542260-32542279 | MS.gene003737:intron | 40.0% |
| ! | ATGAAGTATCCGATACCGTT+TGG | + | chr4.1:32542137-32542156 | MS.gene003737:intron | 40.0% |
| !! | TCACATACTTTAGCCTTGGT+AGG | - | chr4.1:32542873-32542892 | None:intergenic | 40.0% |
| !! | TTTGGTGACGGCAATACAAA+AGG | + | chr4.1:32543062-32543081 | MS.gene003737:CDS | 40.0% |
| ACAGCAAAAGCTACTCATCC+GGG | + | chr4.1:32541663-32541682 | MS.gene003737:CDS | 45.0% | |
| ACCGAGACACCTTAAACAAG+TGG | - | chr4.1:32542264-32542283 | None:intergenic | 45.0% | |
| AGGATTGAAAGCTCCTCCTA+GGG | + | chr4.1:32543025-32543044 | MS.gene003737:CDS | 45.0% | |
| ATAGGTGATCCACCTTGGAT+TGG | - | chr4.1:32543847-32543866 | None:intergenic | 45.0% | |
| CTAACTTCACAGCCTCAACA+AGG | - | chr4.1:32541603-32541622 | None:intergenic | 45.0% | |
| CTTCCTTCTCTTGTTCAACC+AGG | + | chr4.1:32543005-32543024 | MS.gene003737:CDS | 45.0% | |
| CTTTGATAGGTGATCCACCT+TGG | - | chr4.1:32543852-32543871 | None:intergenic | 45.0% | |
| GCTATGGCCTTCAAGAGATA+AGG | - | chr4.1:32541846-32541865 | None:intergenic | 45.0% | |
| GGATCACGACACTATCTCAA+AGG | - | chr4.1:32543631-32543650 | None:intergenic | 45.0% | |
| GGATCTGAGCCAAATTCAGA+TGG | - | chr4.1:32542852-32542871 | None:intergenic | 45.0% | |
| GGCTGATCCTTATCTCTTGA+AGG | + | chr4.1:32541836-32541855 | MS.gene003737:intron | 45.0% | |
| TAACCTAACCAGCATGTGGT+TGG | - | chr4.1:32542302-32542321 | None:intergenic | 45.0% | |
| TGTACCCAATAAGTACTCGG+TGG | - | chr4.1:32542177-32542196 | None:intergenic | 45.0% | |
| ! | ATTTGGCTCAGATCCTACCA+AGG | + | chr4.1:32542857-32542876 | MS.gene003737:CDS | 45.0% |
| ! | GTTTTGTACTTGAGACCTCC+AGG | + | chr4.1:32543236-32543255 | MS.gene003737:CDS | 45.0% |
| !! | AAGGCGACGTTTGTTGTCAT+TGG | + | chr4.1:32543799-32543818 | MS.gene003737:intron | 45.0% |
| !! | AGATGAAGCAAGCCTTGTTG+AGG | + | chr4.1:32541588-32541607 | MS.gene003737:CDS | 45.0% |
| !! | AGTGGTAATGGTTTGATCCC+CGG | - | chr4.1:32542246-32542265 | None:intergenic | 45.0% |
| !! | TGCTGCTTTCACCATCAATG+CGG | + | chr4.1:32543187-32543206 | MS.gene003737:CDS | 45.0% |
| !! | TTTTAAGAAGGCGGGTTCTG+AGG | + | chr4.1:32543484-32543503 | MS.gene003737:intron | 45.0% |
| AGGCAACTTGTGGAAGCTGA+AGG | + | chr4.1:32542936-32542955 | MS.gene003737:CDS | 50.0% | |
| ATTGGTGCAACGGGAAGTCT+TGG | + | chr4.1:32541337-32541356 | MS.gene003737:CDS | 50.0% | |
| ATTGTGACTTCGTCCCTAGG+AGG | - | chr4.1:32543041-32543060 | None:intergenic | 50.0% | |
| CACGGTGCTTCTCATTCTCA+CGG | - | chr4.1:32543764-32543783 | None:intergenic | 50.0% | |
| CACTTGAACCAACCACATGC+TGG | + | chr4.1:32542291-32542310 | MS.gene003737:intron | 50.0% | |
| CAGGATTGAAAGCTCCTCCT+AGG | + | chr4.1:32543024-32543043 | MS.gene003737:CDS | 50.0% | |
| CTAGGAGGAGCTTTCAATCC+TGG | - | chr4.1:32543026-32543045 | None:intergenic | 50.0% | |
| TGCGTAACCTAACCAGCATG+TGG | - | chr4.1:32542306-32542325 | None:intergenic | 50.0% | |
| ! | GAACCAACCACATGCTGGTT+AGG | + | chr4.1:32542296-32542315 | MS.gene003737:intron | 50.0% |
| ! | GTTTTCTCCATCGAGAGAGC+CGG | + | chr4.1:32542224-32542243 | MS.gene003737:intron | 50.0% |
| ! | TTTTCTCCATCGAGAGAGCC+GGG | + | chr4.1:32542225-32542244 | MS.gene003737:intron | 50.0% |
| GGGATCGTCAACCGCATTGA+TGG | - | chr4.1:32543201-32543220 | None:intergenic | 55.0% | |
| TTTCTCCATCGAGAGAGCCG+GGG | + | chr4.1:32542226-32542245 | MS.gene003737:intron | 55.0% | |
| !! | TAAGAAGGCGGGTTCTGAGG+TGG | + | chr4.1:32543487-32543506 | MS.gene003737:intron | 55.0% |
| TTGATCCCCGGCTCTCTCGA+TGG | - | chr4.1:32542234-32542253 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 32541313 | 32544131 | 32541313 | ID=MS.gene003737 |
| chr4.1 | mRNA | 32541313 | 32544131 | 32541313 | ID=MS.gene003737.t1;Parent=MS.gene003737 |
| chr4.1 | exon | 32541313 | 32541492 | 32541313 | ID=MS.gene003737.t1.exon1;Parent=MS.gene003737.t1 |
| chr4.1 | CDS | 32541313 | 32541492 | 32541313 | ID=cds.MS.gene003737.t1;Parent=MS.gene003737.t1 |
| chr4.1 | exon | 32541577 | 32541711 | 32541577 | ID=MS.gene003737.t1.exon2;Parent=MS.gene003737.t1 |
| chr4.1 | CDS | 32541577 | 32541711 | 32541577 | ID=cds.MS.gene003737.t1;Parent=MS.gene003737.t1 |
| chr4.1 | exon | 32542840 | 32543083 | 32542840 | ID=MS.gene003737.t1.exon3;Parent=MS.gene003737.t1 |
| chr4.1 | CDS | 32542840 | 32543083 | 32542840 | ID=cds.MS.gene003737.t1;Parent=MS.gene003737.t1 |
| chr4.1 | exon | 32543162 | 32543365 | 32543162 | ID=MS.gene003737.t1.exon4;Parent=MS.gene003737.t1 |
| chr4.1 | CDS | 32543162 | 32543365 | 32543162 | ID=cds.MS.gene003737.t1;Parent=MS.gene003737.t1 |
| chr4.1 | exon | 32544097 | 32544131 | 32544097 | ID=MS.gene003737.t1.exon5;Parent=MS.gene003737.t1 |
| chr4.1 | CDS | 32544097 | 32544131 | 32544097 | ID=cds.MS.gene003737.t1;Parent=MS.gene003737.t1 |
| Gene Sequence |
| Protein sequence |
