Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039472.t1 | XP_003606937.1 | 96.9 | 254 | 8 | 0 | 1 | 254 | 1 | 254 | 1.20E-134 | 489.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039472.t1 | O65679 | 62.6 | 254 | 88 | 2 | 2 | 255 | 6 | 252 | 6.2e-87 | 322.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039472.t1 | G7JHC4 | 96.9 | 254 | 8 | 0 | 1 | 254 | 1 | 254 | 8.8e-135 | 489.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68805 | MS.gene039472 | PPI |
| MS.gene014270 | MS.gene039472 | PPI |
| MS.gene039472 | MS.gene063157 | PPI |
| MS.gene039472 | MS.gene68212 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039472.t1 | MTR_4g070360 | 96.850 | 254 | 8 | 0 | 1 | 254 | 1 | 254 | 0.0 | 505 |
| MS.gene039472.t1 | MTR_3g111990 | 50.988 | 253 | 122 | 1 | 3 | 255 | 4 | 254 | 2.92e-90 | 270 |
| MS.gene039472.t1 | MTR_5g020740 | 51.969 | 254 | 120 | 1 | 2 | 255 | 4 | 255 | 1.54e-88 | 265 |
| MS.gene039472.t1 | MTR_3g111980 | 50.781 | 256 | 122 | 2 | 2 | 255 | 3 | 256 | 9.42e-87 | 261 |
| MS.gene039472.t1 | MTR_3g116840 | 50.397 | 252 | 123 | 1 | 4 | 255 | 9 | 258 | 1.48e-86 | 260 |
| MS.gene039472.t1 | MTR_4g070370 | 47.082 | 257 | 130 | 3 | 1 | 255 | 5 | 257 | 1.52e-77 | 238 |
| MS.gene039472.t1 | MTR_4g070340 | 43.254 | 252 | 141 | 1 | 4 | 255 | 7 | 256 | 7.52e-71 | 221 |
| MS.gene039472.t1 | MTR_5g020760 | 41.825 | 263 | 140 | 3 | 3 | 254 | 4 | 264 | 2.87e-69 | 215 |
| MS.gene039472.t1 | MTR_5g020760 | 41.667 | 264 | 141 | 3 | 3 | 255 | 4 | 265 | 9.07e-69 | 215 |
| MS.gene039472.t1 | MTR_5g020800 | 41.667 | 264 | 141 | 3 | 3 | 255 | 4 | 265 | 9.27e-69 | 215 |
| MS.gene039472.t1 | MTR_5g027240 | 43.629 | 259 | 140 | 2 | 1 | 254 | 1 | 258 | 2.11e-68 | 214 |
| MS.gene039472.t1 | MTR_5g027290 | 42.910 | 268 | 147 | 2 | 1 | 263 | 1 | 267 | 6.66e-68 | 213 |
| MS.gene039472.t1 | MTR_4g070340 | 42.063 | 252 | 139 | 2 | 4 | 255 | 7 | 251 | 5.53e-66 | 208 |
| MS.gene039472.t1 | MTR_8g071130 | 42.085 | 259 | 144 | 2 | 1 | 254 | 1 | 258 | 2.81e-65 | 206 |
| MS.gene039472.t1 | MTR_4g070340 | 41.463 | 205 | 118 | 1 | 51 | 255 | 5 | 207 | 3.11e-53 | 174 |
| MS.gene039472.t1 | MTR_1g093720 | 36.364 | 253 | 154 | 4 | 1 | 250 | 11 | 259 | 8.14e-52 | 172 |
| MS.gene039472.t1 | MTR_3g008140 | 35.968 | 253 | 151 | 5 | 2 | 251 | 4 | 248 | 5.78e-49 | 164 |
| MS.gene039472.t1 | MTR_3g008100 | 36.000 | 250 | 153 | 4 | 3 | 251 | 5 | 248 | 6.19e-49 | 164 |
| MS.gene039472.t1 | MTR_3g007970 | 35.600 | 250 | 154 | 4 | 3 | 251 | 5 | 248 | 1.34e-47 | 160 |
| MS.gene039472.t1 | MTR_3g008100 | 34.800 | 250 | 149 | 4 | 3 | 251 | 5 | 241 | 1.42e-45 | 155 |
| MS.gene039472.t1 | MTR_3g008100 | 33.690 | 187 | 117 | 4 | 3 | 188 | 5 | 185 | 1.23e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039472.t1 | AT4G34540 | 62.598 | 254 | 88 | 2 | 2 | 255 | 6 | 252 | 8.40e-115 | 332 |
| MS.gene039472.t1 | AT1G75280 | 53.125 | 256 | 116 | 2 | 2 | 255 | 4 | 257 | 3.51e-92 | 275 |
| MS.gene039472.t1 | AT1G75290 | 51.562 | 256 | 120 | 2 | 2 | 255 | 4 | 257 | 1.02e-90 | 271 |
| MS.gene039472.t1 | AT1G75290 | 51.562 | 256 | 120 | 2 | 2 | 255 | 31 | 284 | 3.39e-90 | 271 |
| MS.gene039472.t1 | AT4G39230 | 50.996 | 251 | 121 | 1 | 3 | 253 | 4 | 252 | 1.11e-89 | 268 |
| MS.gene039472.t1 | AT1G75300 | 47.955 | 269 | 122 | 3 | 2 | 254 | 4 | 270 | 1.43e-84 | 256 |
| MS.gene039472.t1 | AT1G19540 | 49.020 | 255 | 124 | 3 | 4 | 254 | 3 | 255 | 7.13e-78 | 236 |
| MS.gene039472.t1 | AT1G19540 | 48.837 | 258 | 126 | 3 | 4 | 257 | 3 | 258 | 1.56e-77 | 237 |
| MS.gene039472.t1 | AT1G32100 | 39.080 | 261 | 153 | 2 | 2 | 257 | 8 | 267 | 4.02e-59 | 191 |
| MS.gene039472.t1 | AT4G13660 | 38.996 | 259 | 152 | 2 | 2 | 255 | 8 | 265 | 2.87e-57 | 186 |
| MS.gene039472.t1 | AT4G13660 | 38.996 | 259 | 152 | 2 | 2 | 255 | 8 | 265 | 2.87e-57 | 186 |
Find 56 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAAAGGCATTGAAGTTTA+TGG | 0.188596 | 4.3:-34979747 | None:intergenic |
| GAGATATGGGAAACTAAAAT+AGG | 0.244528 | 4.3:+34981600 | MS.gene039472:CDS |
| TAATACTTGATTCTGCTAAA+TGG | 0.246479 | 4.3:-34979663 | None:intergenic |
| AGGGACAAAGTCACTATATT+TGG | 0.279239 | 4.3:+34981357 | MS.gene039472:CDS |
| AGGTTCATCCCATCTGAATT+TGG | 0.279876 | 4.3:+34981153 | MS.gene039472:CDS |
| TTCAAAGAACAAACATTTCC+TGG | 0.311587 | 4.3:-34981567 | None:intergenic |
| GGAAAGGCATTGAAGTTTAT+GGG | 0.335646 | 4.3:-34979746 | None:intergenic |
| TTGCAGGAGATGAAAGTATA+TGG | 0.349566 | 4.3:-34981276 | None:intergenic |
| TTGAAGTTTATGGGATTTGA+TGG | 0.363989 | 4.3:-34979737 | None:intergenic |
| TGAATGAGCTGGTTGAGATA+TGG | 0.375861 | 4.3:+34981586 | MS.gene039472:CDS |
| TTATCTGTTAAGACTTTAAG+AGG | 0.391320 | 4.3:+34982396 | MS.gene039472:intron |
| TACAACAAAAGCTACTCATC+AGG | 0.411527 | 4.3:+34979966 | MS.gene039472:CDS |
| GAATGAGCTGGTTGAGATAT+GGG | 0.421530 | 4.3:+34981587 | MS.gene039472:CDS |
| CTTCCTTCTCTTGTCCAACC+AGG | 0.425019 | 4.3:+34981318 | MS.gene039472:CDS |
| CTTCAATGCCTTTCCCATGC+TGG | 0.428488 | 4.3:+34979754 | MS.gene039472:CDS |
| CAAACAACTTGGTTCTATCA+AGG | 0.437457 | 4.3:+34979994 | MS.gene039472:CDS |
| CAGGATTAAAAGCTCCTCCT+AGG | 0.463730 | 4.3:+34981337 | MS.gene039472:CDS |
| AATTGTAGGTGTATTTATGC+AGG | 0.470701 | 4.3:+34981467 | MS.gene039472:intron |
| CTCTAACAAGAGCAAATGTT+GGG | 0.483286 | 4.3:-34979696 | None:intergenic |
| TGTTAAGACTTTAAGAGGCA+TGG | 0.483389 | 4.3:+34982401 | MS.gene039472:intron |
| ATTGGTGCAACGGGAAGTCT+TGG | 0.488303 | 4.3:+34979637 | MS.gene039472:CDS |
| AGATATGGGAAACTAAAATA+GGG | 0.489971 | 4.3:+34981601 | MS.gene039472:CDS |
| TCTCTAACAAGAGCAAATGT+TGG | 0.501646 | 4.3:-34979697 | None:intergenic |
| TTTGGTGACGGCAATACAAA+AGG | 0.514372 | 4.3:+34981375 | MS.gene039472:CDS |
| GAGAAAATCATACTTTGAGA+AGG | 0.521010 | 4.3:-34979783 | None:intergenic |
| AATCCTGGTTGGACAAGAGA+AGG | 0.534523 | 4.3:-34981321 | None:intergenic |
| CAAAACTTTATTCAACGTGC+GGG | 0.536330 | 4.3:-34981532 | None:intergenic |
| AATTGAAATTAGGCAACTTG+TGG | 0.541470 | 4.3:+34981239 | MS.gene039472:CDS |
| AAGTTCACATACTTTAGCCT+TGG | 0.542851 | 4.3:-34981187 | None:intergenic |
| ATCAGGGTTATCAAACAACT+TGG | 0.542961 | 4.3:+34979983 | MS.gene039472:CDS |
| TGAAGTTTATGGGATTTGAT+GGG | 0.544984 | 4.3:-34979736 | None:intergenic |
| TGTTTGTTCTTTGAATGAGC+TGG | 0.551475 | 4.3:+34981575 | MS.gene039472:CDS |
| GGATCTGAGCCAAATTCAGA+TGG | 0.556972 | 4.3:-34981162 | None:intergenic |
| GGCTAAAGTATGTGAACTTG+AGG | 0.561289 | 4.3:+34981191 | MS.gene039472:CDS |
| GGGTAACTCCAGCATGGGAA+AGG | 0.565218 | 4.3:-34979762 | None:intergenic |
| TCACATACTTTAGCCTTGGT+AGG | 0.568317 | 4.3:-34981183 | None:intergenic |
| AGGATTAAAAGCTCCTCCTA+GGG | 0.569921 | 4.3:+34981338 | MS.gene039472:CDS |
| GAGCTGCTTGAGAAAATCAA+AGG | 0.590625 | 4.3:+34981657 | MS.gene039472:CDS |
| AAAGTATGTGAACTTGAGGA+TGG | 0.599062 | 4.3:+34981195 | MS.gene039472:CDS |
| GAGAAGGGTAACTCCAGCAT+GGG | 0.599164 | 4.3:-34979767 | None:intergenic |
| AGAAAATCATACTTTGAGAA+GGG | 0.600453 | 4.3:-34979782 | None:intergenic |
| AGGCAACTTGTGGAAGCTGA+AGG | 0.602341 | 4.3:+34981249 | MS.gene039472:CDS |
| TGAGAAGGGTAACTCCAGCA+TGG | 0.605275 | 4.3:-34979768 | None:intergenic |
| ACAAAACTTTATTCAACGTG+CGG | 0.614674 | 4.3:-34981533 | None:intergenic |
| AATATAGTGACTTTGTCCCT+AGG | 0.615843 | 4.3:-34981354 | None:intergenic |
| ACAACAAAAGCTACTCATCA+GGG | 0.618980 | 4.3:+34979967 | MS.gene039472:CDS |
| AGATGAAGCAAGCCTTGTTG+AGG | 0.626473 | 4.3:+34979892 | MS.gene039472:CDS |
| CTAACTTCACAGCCTCAACA+AGG | 0.643328 | 4.3:-34979904 | None:intergenic |
| AAAGTCACTATATTTGGTGA+CGG | 0.648569 | 4.3:+34981363 | MS.gene039472:CDS |
| ATAGTGACTTTGTCCCTAGG+AGG | 0.649958 | 4.3:-34981351 | None:intergenic |
| GATCTGAGCCAAATTCAGAT+GGG | 0.661245 | 4.3:-34981161 | None:intergenic |
| AAATAGGGAAGAAACTTGAG+AGG | 0.666892 | 4.3:+34981616 | MS.gene039472:CDS |
| AAAACTTTATTCAACGTGCG+GGG | 0.672201 | 4.3:-34981531 | None:intergenic |
| TGCTGCTTTCACTATCAATG+CGG | 0.675047 | 4.3:+34981500 | MS.gene039472:CDS |
| AAAGAACAAACATTTCCTGG+AGG | 0.691831 | 4.3:-34981564 | None:intergenic |
| ATTTGGCTCAGATCCTACCA+AGG | 0.716779 | 4.3:+34981170 | MS.gene039472:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTTATAGAAATATAAT+AGG | - | chr4.3:34980939-34980958 | None:intergenic | 10.0% |
| !!! | TTAATAAGAATTGAATTTTT+AGG | + | chr4.3:34981990-34982009 | MS.gene039472:intron | 10.0% |
| !!! | TTATCATATTTTTATAGTTT+AGG | - | chr4.3:34980746-34980765 | None:intergenic | 10.0% |
| !! | ACTAGAATATTAAGTAATTT+AGG | + | chr4.3:34980877-34980896 | MS.gene039472:intron | 15.0% |
| !! | ATCTATAAGCTTATATATAA+GGG | + | chr4.3:34982272-34982291 | MS.gene039472:intron | 15.0% |
| !! | CTAGAATATTAAGTAATTTA+GGG | + | chr4.3:34980878-34980897 | MS.gene039472:intron | 15.0% |
| !! | TATAGTATATACTATCAATT+TGG | - | chr4.3:34980979-34980998 | None:intergenic | 15.0% |
| !! | TATCTATAAGCTTATATATA+AGG | + | chr4.3:34982271-34982290 | MS.gene039472:intron | 15.0% |
| !!! | AAAAGCAAGATTTTAATAAT+TGG | + | chr4.3:34979619-34979638 | MS.gene039472:CDS | 15.0% |
| !!! | CTTTTGTTTATAATAAATTG+AGG | + | chr4.3:34981012-34981031 | MS.gene039472:intron | 15.0% |
| !! | AATAAAAAATTCAGCTCAAA+AGG | + | chr4.3:34980391-34980410 | MS.gene039472:intron | 20.0% |
| !! | ATAAAAAATTCAGCTCAAAA+GGG | + | chr4.3:34980392-34980411 | MS.gene039472:intron | 20.0% |
| !! | ATATGTTCAGAATAATTCAT+AGG | - | chr4.3:34982365-34982384 | None:intergenic | 20.0% |
| !! | CTATAAAAATATGATAAGTC+AGG | + | chr4.3:34980749-34980768 | MS.gene039472:intron | 20.0% |
| !! | TTCAATAAAAATAAGGGAAA+AGG | - | chr4.3:34982027-34982046 | None:intergenic | 20.0% |
| !!! | AACAACTTTAGTTTTTAAGA+AGG | + | chr4.3:34981785-34981804 | MS.gene039472:intron | 20.0% |
| !!! | ATTCTAGTTCTTATCTTTAA+AGG | - | chr4.3:34980865-34980884 | None:intergenic | 20.0% |
| !!! | ATTTGTTTGTTAACATTTGT+TGG | + | chr4.3:34981124-34981143 | MS.gene039472:intron | 20.0% |
| !!! | TCCAAATTTTTACTTTAGTT+CGG | + | chr4.3:34980204-34980223 | MS.gene039472:intron | 20.0% |
| !!! | TTTTGAAAATATTGAATTGC+AGG | - | chr4.3:34982226-34982245 | None:intergenic | 20.0% |
| ! | AAAATAACAAGTATCAGCTA+TGG | - | chr4.3:34980176-34980195 | None:intergenic | 25.0% |
| ! | AGATATGGGAAACTAAAATA+GGG | + | chr4.3:34981601-34981620 | MS.gene039472:CDS | 25.0% |
| ! | ATATATGCGATATATCCTAA+TGG | - | chr4.3:34980668-34980687 | None:intergenic | 25.0% |
| ! | ATGAACTCTTCAAATTCTTA+TGG | + | chr4.3:34980039-34980058 | MS.gene039472:intron | 25.0% |
| ! | ATGCACCAAAAATTGAAATT+AGG | + | chr4.3:34981229-34981248 | MS.gene039472:CDS | 25.0% |
| ! | GGATTATTAAATGTTCATGT+AGG | - | chr4.3:34981053-34981072 | None:intergenic | 25.0% |
| ! | GTCATTGAAAAATATAAGCA+TGG | - | chr4.3:34980318-34980337 | None:intergenic | 25.0% |
| ! | TAATACTTGATTCTGCTAAA+TGG | - | chr4.3:34979666-34979685 | None:intergenic | 25.0% |
| ! | TAATTTAGGGACTAAGTTTA+TGG | + | chr4.3:34980891-34980910 | MS.gene039472:intron | 25.0% |
| ! | TCTATAAATTGAAGAGTGAT+AGG | + | chr4.3:34980947-34980966 | MS.gene039472:intron | 25.0% |
| ! | TGCCAGTTCAATAAAAATAA+GGG | - | chr4.3:34982033-34982052 | None:intergenic | 25.0% |
| ! | TTAAAAGGCAAATTATACAG+TGG | - | chr4.3:34982192-34982211 | None:intergenic | 25.0% |
| ! | TTAAATCAGAATGACTTTAC+AGG | - | chr4.3:34982309-34982328 | None:intergenic | 25.0% |
| ! | TTATCTGTTAAGACTTTAAG+AGG | + | chr4.3:34982396-34982415 | MS.gene039472:intron | 25.0% |
| !! | AATTTTCATGAAGAAATTGC+AGG | - | chr4.3:34981295-34981314 | None:intergenic | 25.0% |
| !! | AGAAAATCATACTTTGAGAA+GGG | - | chr4.3:34979785-34979804 | None:intergenic | 25.0% |
| !! | AGTTGCCTAATTTCAATTTT+TGG | - | chr4.3:34981237-34981256 | None:intergenic | 25.0% |
| !! | CTTATCTTTAAAGGAATTGA+TGG | - | chr4.3:34980856-34980875 | None:intergenic | 25.0% |
| !! | TATGGACTGAAAATAGTTTA+GGG | + | chr4.3:34980909-34980928 | MS.gene039472:intron | 25.0% |
| !! | TGTGATTTGTGTATTCAAAT+AGG | - | chr4.3:34981074-34981093 | None:intergenic | 25.0% |
| !! | TTATGGACTGAAAATAGTTT+AGG | + | chr4.3:34980908-34980927 | MS.gene039472:intron | 25.0% |
| !! | TTGGATTGATTTCTACATAA+TGG | - | chr4.3:34982336-34982355 | None:intergenic | 25.0% |
| !!! | AAATTTTAAGTACCAATCCA+AGG | + | chr4.3:34982145-34982164 | MS.gene039472:intron | 25.0% |
| !!! | AACTTTAGTTTTTAAGAAGG+CGG | + | chr4.3:34981788-34981807 | MS.gene039472:intron | 25.0% |
| !!! | AATAATTCATAGGCTTTGTT+TGG | - | chr4.3:34982355-34982374 | None:intergenic | 25.0% |
| !!! | ATATACTTTTTCAGCTAACA+AGG | - | chr4.3:34980103-34980122 | None:intergenic | 25.0% |
| !!! | ATTTTAATAATTGGTGCAAC+GGG | + | chr4.3:34979628-34979647 | MS.gene039472:CDS | 25.0% |
| !!! | ATTTTTTAAGTGTCAAACCA+AGG | - | chr4.3:34981851-34981870 | None:intergenic | 25.0% |
| !!! | CCAAATTTTTACTTTAGTTC+GGG | + | chr4.3:34980205-34980224 | MS.gene039472:intron | 25.0% |
| !!! | GATTTTAATAATTGGTGCAA+CGG | + | chr4.3:34979627-34979646 | MS.gene039472:CDS | 25.0% |
| !!! | GCTGATACTTGTTATTTTTT+AGG | + | chr4.3:34980178-34980197 | MS.gene039472:intron | 25.0% |
| !!! | TGGTTGATATTTTATGTACA+GGG | + | chr4.3:34979860-34979879 | MS.gene039472:intron | 25.0% |
| !!! | TTCCCTTATTTTTATTGAAC+TGG | + | chr4.3:34982028-34982047 | MS.gene039472:intron | 25.0% |
| AAACCATTACCACTTGTTTA+AGG | + | chr4.3:34980566-34980585 | MS.gene039472:intron | 30.0% | |
| AAACTTCTCAAAAGATTCTC+AGG | + | chr4.3:34981736-34981755 | MS.gene039472:intron | 30.0% | |
| AACTTCTCAAAAGATTCTCA+GGG | + | chr4.3:34981737-34981756 | MS.gene039472:intron | 30.0% | |
| AATCATGAATAAGTAAGCTC+TGG | - | chr4.3:34981440-34981459 | None:intergenic | 30.0% | |
| AATTGAAATTAGGCAACTTG+TGG | + | chr4.3:34981239-34981258 | MS.gene039472:CDS | 30.0% | |
| AATTGTAGGTGTATTTATGC+AGG | + | chr4.3:34981467-34981486 | MS.gene039472:intron | 30.0% | |
| ACAAAACTTTATTCAACGTG+CGG | - | chr4.3:34981536-34981555 | None:intergenic | 30.0% | |
| AGAGAAAGAACGATAGTTTA+AGG | - | chr4.3:34980714-34980733 | None:intergenic | 30.0% | |
| AGAGCTTACTTATTCATGAT+TGG | + | chr4.3:34981439-34981458 | MS.gene039472:intron | 30.0% | |
| CAGGAACAAAACTACTTAAA+AGG | - | chr4.3:34982207-34982226 | None:intergenic | 30.0% | |
| CATTTAGAAGTAGAAGTTCA+TGG | + | chr4.3:34981902-34981921 | MS.gene039472:intron | 30.0% | |
| CCCGAACTAAAGTAAAAATT+TGG | - | chr4.3:34980208-34980227 | None:intergenic | 30.0% | |
| CTATACGAATGCTATATTGT+TGG | - | chr4.3:34980342-34980361 | None:intergenic | 30.0% | |
| CTTATAGAAGTAGAAACTCA+CGG | - | chr4.3:34982095-34982114 | None:intergenic | 30.0% | |
| GAAGATTAATCACTACCAAA+CGG | - | chr4.3:34980469-34980488 | None:intergenic | 30.0% | |
| GAGATATGGGAAACTAAAAT+AGG | + | chr4.3:34981600-34981619 | MS.gene039472:CDS | 30.0% | |
| GTGCCAGTTCAATAAAAATA+AGG | - | chr4.3:34982034-34982053 | None:intergenic | 30.0% | |
| TATGATAAGTCAGGACTAAT+CGG | + | chr4.3:34980758-34980777 | MS.gene039472:intron | 30.0% | |
| TGAAGTTTATGGGATTTGAT+GGG | - | chr4.3:34979739-34979758 | None:intergenic | 30.0% | |
| TTACTTAAGAGCTAAATGAG+AGG | - | chr4.3:34982250-34982269 | None:intergenic | 30.0% | |
| TTCAAAGAACAAACATTTCC+TGG | - | chr4.3:34981570-34981589 | None:intergenic | 30.0% | |
| TTGAAGTTTATGGGATTTGA+TGG | - | chr4.3:34979740-34979759 | None:intergenic | 30.0% | |
| ! | AAAGTCACTATATTTGGTGA+CGG | + | chr4.3:34981363-34981382 | MS.gene039472:CDS | 30.0% |
| ! | GAGAAAATCATACTTTGAGA+AGG | - | chr4.3:34979786-34979805 | None:intergenic | 30.0% |
| ! | TAATGGACAACATATTCTAG+CGG | - | chr4.3:34980129-34980148 | None:intergenic | 30.0% |
| ! | TATAAACAAAAGCACACATG+TGG | - | chr4.3:34981004-34981023 | None:intergenic | 30.0% |
| !! | AAGCTCTGGAAAAATGAAAA+TGG | - | chr4.3:34981426-34981445 | None:intergenic | 30.0% |
| !! | GTGGTTGATATTTTATGTAC+AGG | + | chr4.3:34979859-34979878 | MS.gene039472:intron | 30.0% |
| !! | TCATAATGCACTGATTCATA+AGG | - | chr4.3:34981699-34981718 | None:intergenic | 30.0% |
| !!! | ACTTTAGTTTTTAAGAAGGC+GGG | + | chr4.3:34981789-34981808 | MS.gene039472:intron | 30.0% |
| !!! | CATGATTGGTTTTCAATTGT+AGG | + | chr4.3:34981453-34981472 | MS.gene039472:intron | 30.0% |
| AAAACTTTATTCAACGTGCG+GGG | - | chr4.3:34981534-34981553 | None:intergenic | 35.0% | |
| AAAGAACAAACATTTCCTGG+AGG | - | chr4.3:34981567-34981586 | None:intergenic | 35.0% | |
| AAAGTATGTGAACTTGAGGA+TGG | + | chr4.3:34981195-34981214 | MS.gene039472:CDS | 35.0% | |
| AAATAGGGAAGAAACTTGAG+AGG | + | chr4.3:34981616-34981635 | MS.gene039472:CDS | 35.0% | |
| AAATTGAAGAGTGATAGGCA+GGG | + | chr4.3:34980952-34980971 | MS.gene039472:intron | 35.0% | |
| AAGTTCACATACTTTAGCCT+TGG | - | chr4.3:34981190-34981209 | None:intergenic | 35.0% | |
| AATATAGTGACTTTGTCCCT+AGG | - | chr4.3:34981357-34981376 | None:intergenic | 35.0% | |
| ACAACAAAAGCTACTCATCA+GGG | + | chr4.3:34979967-34979986 | MS.gene039472:CDS | 35.0% | |
| AGACCTTAAACAAGTGGTAA+TGG | - | chr4.3:34980572-34980591 | None:intergenic | 35.0% | |
| AGGGACAAAGTCACTATATT+TGG | + | chr4.3:34981357-34981376 | MS.gene039472:CDS | 35.0% | |
| ATCAGGGTTATCAAACAACT+TGG | + | chr4.3:34979983-34980002 | MS.gene039472:CDS | 35.0% | |
| ATGCGATATATCCTAATGGA+AGG | - | chr4.3:34980664-34980683 | None:intergenic | 35.0% | |
| ATGTGTACCCAATAAGTACT+CGG | - | chr4.3:34980494-34980513 | None:intergenic | 35.0% | |
| CAAAACTTTATTCAACGTGC+GGG | - | chr4.3:34981535-34981554 | None:intergenic | 35.0% | |
| CGTGAGTTTCTACTTCTATA+AGG | + | chr4.3:34982093-34982112 | MS.gene039472:intron | 35.0% | |
| CTCTAACAAGAGCAAATGTT+GGG | - | chr4.3:34979699-34979718 | None:intergenic | 35.0% | |
| GAAAAGAGACCTTAAACAAG+TGG | - | chr4.3:34980578-34980597 | None:intergenic | 35.0% | |
| GCTAGAATATGTTGTCCATT+AGG | + | chr4.3:34980128-34980147 | MS.gene039472:intron | 35.0% | |
| GGAGAAAACTTTGTTGAGAT+TGG | - | chr4.3:34980527-34980546 | None:intergenic | 35.0% | |
| TAAATTGAAGAGTGATAGGC+AGG | + | chr4.3:34980951-34980970 | MS.gene039472:intron | 35.0% | |
| TAATCACTACCAAACGGTAT+CGG | - | chr4.3:34980463-34980482 | None:intergenic | 35.0% | |
| TACAACAAAAGCTACTCATC+AGG | + | chr4.3:34979966-34979985 | MS.gene039472:CDS | 35.0% | |
| TCTCTAACAAGAGCAAATGT+TGG | - | chr4.3:34979700-34979719 | None:intergenic | 35.0% | |
| TGCGATATATCCTAATGGAA+GGG | - | chr4.3:34980663-34980682 | None:intergenic | 35.0% | |
| TGTTTGTTCTTTGAATGAGC+TGG | + | chr4.3:34981575-34981594 | MS.gene039472:CDS | 35.0% | |
| ! | CTTACATTTTCCCTTCCATT+AGG | + | chr4.3:34980650-34980669 | MS.gene039472:intron | 35.0% |
| ! | TCTGAAACTCTAACGATGTT+TGG | + | chr4.3:34981873-34981892 | MS.gene039472:intron | 35.0% |
| ! | TGAGTCTTATCTGATTCTTG+TGG | + | chr4.3:34979840-34979859 | MS.gene039472:intron | 35.0% |
| ! | TGTTAAGACTTTAAGAGGCA+TGG | + | chr4.3:34982401-34982420 | MS.gene039472:intron | 35.0% |
| ! | TTAACATTTGTTGGCTACAG+AGG | + | chr4.3:34981133-34981152 | MS.gene039472:intron | 35.0% |
| ! | TTCATGTAGGTTGAGTTTCA+AGG | - | chr4.3:34981040-34981059 | None:intergenic | 35.0% |
| ! | TTGCAGGAGATGAAAGTATA+TGG | - | chr4.3:34981279-34981298 | None:intergenic | 35.0% |
| !! | ATACAGTGGACTACTTTGAT+AGG | - | chr4.3:34982178-34982197 | None:intergenic | 35.0% |
| !! | CAAACAACTTGGTTCTATCA+AGG | + | chr4.3:34979994-34980013 | MS.gene039472:CDS | 35.0% |
| !! | GGAAAGGCATTGAAGTTTAT+GGG | - | chr4.3:34979749-34979768 | None:intergenic | 35.0% |
| !! | TTTTAAGTACCAATCCAAGG+TGG | + | chr4.3:34982148-34982167 | MS.gene039472:intron | 35.0% |
| !!! | CTTGTTTTTGTCAACTTGCA+CGG | - | chr4.3:34981964-34981983 | None:intergenic | 35.0% |
| AGGATTAAAAGCTCCTCCTA+GGG | + | chr4.3:34981338-34981357 | MS.gene039472:CDS | 40.0% | |
| AGGTTCATCCCATCTGAATT+TGG | + | chr4.3:34981153-34981172 | MS.gene039472:CDS | 40.0% | |
| ATCTTCCACCGAGTACTTAT+TGG | + | chr4.3:34980483-34980502 | MS.gene039472:intron | 40.0% | |
| CTATCTCAAAGGTAAAGACG+AGG | - | chr4.3:34981932-34981951 | None:intergenic | 40.0% | |
| CTATGGCCTTCAAGAGATAA+AGG | - | chr4.3:34980159-34980178 | None:intergenic | 40.0% | |
| GAATGAGCTGGTTGAGATAT+GGG | + | chr4.3:34981587-34981606 | MS.gene039472:CDS | 40.0% | |
| GAGATAAAGGATCAGCCTAA+TGG | - | chr4.3:34980146-34980165 | None:intergenic | 40.0% | |
| GAGCTGCTTGAGAAAATCAA+AGG | + | chr4.3:34981657-34981676 | MS.gene039472:CDS | 40.0% | |
| GATAGAAAGATGGTTCACCT+TGG | + | chr4.3:34981831-34981850 | MS.gene039472:intron | 40.0% | |
| GATCTGAGCCAAATTCAGAT+GGG | - | chr4.3:34981164-34981183 | None:intergenic | 40.0% | |
| GCTGATCCTTTATCTCTTGA+AGG | + | chr4.3:34980150-34980169 | MS.gene039472:intron | 40.0% | |
| GGATCACCTTGATAGAAAGA+TGG | + | chr4.3:34981821-34981840 | MS.gene039472:intron | 40.0% | |
| GGCTAAAGTATGTGAACTTG+AGG | + | chr4.3:34981191-34981210 | MS.gene039472:CDS | 40.0% | |
| GGTGAACCATCTTTCTATCA+AGG | - | chr4.3:34981830-34981849 | None:intergenic | 40.0% | |
| TCTTCCACCGAGTACTTATT+GGG | + | chr4.3:34980484-34980503 | MS.gene039472:intron | 40.0% | |
| TGAATGAGCTGGTTGAGATA+TGG | + | chr4.3:34981586-34981605 | MS.gene039472:CDS | 40.0% | |
| ! | ATGAAGTATCCGATACCGTT+TGG | + | chr4.3:34980451-34980470 | MS.gene039472:intron | 40.0% |
| !! | GGGAAAGGCATTGAAGTTTA+TGG | - | chr4.3:34979750-34979769 | None:intergenic | 40.0% |
| !! | TCACATACTTTAGCCTTGGT+AGG | - | chr4.3:34981186-34981205 | None:intergenic | 40.0% |
| !! | TGCACTGATTCATAAGGTAG+TGG | - | chr4.3:34981693-34981712 | None:intergenic | 40.0% |
| !! | TGCTGCTTTCACTATCAATG+CGG | + | chr4.3:34981500-34981519 | MS.gene039472:CDS | 40.0% |
| !! | TTTGGTGACGGCAATACAAA+AGG | + | chr4.3:34981375-34981394 | MS.gene039472:CDS | 40.0% |
| AATCCTGGTTGGACAAGAGA+AGG | - | chr4.3:34981324-34981343 | None:intergenic | 45.0% | |
| ATAGGTGATCCACCTTGGAT+TGG | - | chr4.3:34982160-34982179 | None:intergenic | 45.0% | |
| ATAGTGACTTTGTCCCTAGG+AGG | - | chr4.3:34981354-34981373 | None:intergenic | 45.0% | |
| CAGGATTAAAAGCTCCTCCT+AGG | + | chr4.3:34981337-34981356 | MS.gene039472:CDS | 45.0% | |
| CTAACTTCACAGCCTCAACA+AGG | - | chr4.3:34979907-34979926 | None:intergenic | 45.0% | |
| CTTTGATAGGTGATCCACCT+TGG | - | chr4.3:34982165-34982184 | None:intergenic | 45.0% | |
| GGATCACGACACTATCTCAA+AGG | - | chr4.3:34981943-34981962 | None:intergenic | 45.0% | |
| GGATCTGAGCCAAATTCAGA+TGG | - | chr4.3:34981165-34981184 | None:intergenic | 45.0% | |
| TAACCTAACCAGCATGTGGT+TGG | - | chr4.3:34980608-34980627 | None:intergenic | 45.0% | |
| TGCATAACCTAACCAGCATG+TGG | - | chr4.3:34980612-34980631 | None:intergenic | 45.0% | |
| TGTACCCAATAAGTACTCGG+TGG | - | chr4.3:34980491-34980510 | None:intergenic | 45.0% | |
| ! | ATTTGGCTCAGATCCTACCA+AGG | + | chr4.3:34981170-34981189 | MS.gene039472:CDS | 45.0% |
| ! | CTAGGAGGAGCTTTTAATCC+TGG | - | chr4.3:34981339-34981358 | None:intergenic | 45.0% |
| ! | GAGGAGCTTTTAATCCTGGT+TGG | - | chr4.3:34981335-34981354 | None:intergenic | 45.0% |
| ! | GTTTTGTACTTGAGACCTCC+AGG | + | chr4.3:34981549-34981568 | MS.gene039472:CDS | 45.0% |
| !! | AAGGCGACGTTTGTTGTCAT+TGG | + | chr4.3:34982112-34982131 | MS.gene039472:intron | 45.0% |
| !! | AGATGAAGCAAGCCTTGTTG+AGG | + | chr4.3:34979892-34979911 | MS.gene039472:CDS | 45.0% |
| !! | AGTGGTAATGGTTTGATCCC+CGG | - | chr4.3:34980560-34980579 | None:intergenic | 45.0% |
| !! | TTTTAAGAAGGCGGGTTCTG+AGG | + | chr4.3:34981797-34981816 | MS.gene039472:intron | 45.0% |
| !! | ATATATTGTTATAAATATTA+TGG | + | chr4.3:34980426-34980445 | MS.gene039472:intron | 5.0% |
| !! | TATTTATAACAATATATAAA+AGG | - | chr4.3:34980423-34980442 | None:intergenic | 5.0% |
| AGGCAACTTGTGGAAGCTGA+AGG | + | chr4.3:34981249-34981268 | MS.gene039472:CDS | 50.0% | |
| ATTGGTGCAACGGGAAGTCT+TGG | + | chr4.3:34979637-34979656 | MS.gene039472:CDS | 50.0% | |
| CACGGTGCTTCTCATTCTCA+CGG | - | chr4.3:34982077-34982096 | None:intergenic | 50.0% | |
| CACTTGAACCAACCACATGC+TGG | + | chr4.3:34980597-34980616 | MS.gene039472:intron | 50.0% | |
| CTTCAATGCCTTTCCCATGC+TGG | + | chr4.3:34979754-34979773 | MS.gene039472:CDS | 50.0% | |
| CTTCCTTCTCTTGTCCAACC+AGG | + | chr4.3:34981318-34981337 | MS.gene039472:CDS | 50.0% | |
| GAGAAGGGTAACTCCAGCAT+GGG | - | chr4.3:34979770-34979789 | None:intergenic | 50.0% | |
| TGAGAAGGGTAACTCCAGCA+TGG | - | chr4.3:34979771-34979790 | None:intergenic | 50.0% | |
| ! | GAACCAACCACATGCTGGTT+AGG | + | chr4.3:34980602-34980621 | MS.gene039472:intron | 50.0% |
| ! | GTTTTCTCCATCGAGAGAGC+CGG | + | chr4.3:34980538-34980557 | MS.gene039472:intron | 50.0% |
| ! | TTTTCTCCATCGAGAGAGCC+GGG | + | chr4.3:34980539-34980558 | MS.gene039472:intron | 50.0% |
| GGGTAACTCCAGCATGGGAA+AGG | - | chr4.3:34979765-34979784 | None:intergenic | 55.0% | |
| TTTCTCCATCGAGAGAGCCG+GGG | + | chr4.3:34980540-34980559 | MS.gene039472:intron | 55.0% | |
| !! | TAAGAAGGCGGGTTCTGAGG+TGG | + | chr4.3:34981800-34981819 | MS.gene039472:intron | 55.0% |
| TTGATCCCCGGCTCTCTCGA+TGG | - | chr4.3:34980548-34980567 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 34979613 | 34982442 | 34979613 | ID=MS.gene039472 |
| chr4.3 | mRNA | 34979613 | 34982442 | 34979613 | ID=MS.gene039472.t1;Parent=MS.gene039472 |
| chr4.3 | exon | 34979613 | 34979792 | 34979613 | ID=MS.gene039472.t1.exon1;Parent=MS.gene039472.t1 |
| chr4.3 | CDS | 34979613 | 34979792 | 34979613 | ID=cds.MS.gene039472.t1;Parent=MS.gene039472.t1 |
| chr4.3 | exon | 34979881 | 34980015 | 34979881 | ID=MS.gene039472.t1.exon2;Parent=MS.gene039472.t1 |
| chr4.3 | CDS | 34979881 | 34980015 | 34979881 | ID=cds.MS.gene039472.t1;Parent=MS.gene039472.t1 |
| chr4.3 | exon | 34981153 | 34981396 | 34981153 | ID=MS.gene039472.t1.exon3;Parent=MS.gene039472.t1 |
| chr4.3 | CDS | 34981153 | 34981396 | 34981153 | ID=cds.MS.gene039472.t1;Parent=MS.gene039472.t1 |
| chr4.3 | exon | 34981475 | 34981678 | 34981475 | ID=MS.gene039472.t1.exon4;Parent=MS.gene039472.t1 |
| chr4.3 | CDS | 34981475 | 34981678 | 34981475 | ID=cds.MS.gene039472.t1;Parent=MS.gene039472.t1 |
| chr4.3 | exon | 34982408 | 34982442 | 34982408 | ID=MS.gene039472.t1.exon5;Parent=MS.gene039472.t1 |
| chr4.3 | CDS | 34982408 | 34982442 | 34982408 | ID=cds.MS.gene039472.t1;Parent=MS.gene039472.t1 |
| Gene Sequence |
| Protein sequence |
