AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014641

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014641.t1 MTR_3g110190 96.812 345 7 3 1 342 1 344 0.0 671
MS.gene014641.t1 MTR_6g087150 44.759 353 128 11 10 326 39 360 4.70e-81 251
MS.gene014641.t1 MTR_5g066250 52.985 134 57 3 10 142 82 210 2.97e-36 136
MS.gene014641.t1 MTR_3g100400 48.276 145 56 2 10 142 69 206 1.34e-34 131
MS.gene014641.t1 MTR_1g082550 42.308 130 67 3 8 134 45 169 3.64e-30 118
MS.gene014641.t1 MTR_4g106680 44.366 142 69 3 8 140 40 180 2.61e-29 114
MS.gene014641.t1 MTR_7g113800 42.969 128 63 3 10 134 42 162 2.53e-28 113
MS.gene014641.t1 MTR_6g007737 37.255 153 84 3 8 149 67 218 3.12e-25 105
MS.gene014641.t1 MTR_4g120270 52.439 82 37 1 62 143 76 155 6.99e-25 102
MS.gene014641.t1 MTR_3g099650 40.157 127 67 3 11 134 58 178 1.07e-24 103
MS.gene014641.t1 MTR_5g064980 39.535 129 71 3 11 134 53 179 6.60e-24 101
MS.gene014641.t1 MTR_2g090950 55.556 81 30 1 64 138 89 169 2.20e-23 97.1
MS.gene014641.t1 MTR_8g063660 37.879 132 67 3 15 134 8 136 3.71e-23 98.6
MS.gene014641.t1 MTR_4g129420 44.697 132 65 4 8 134 58 186 8.04e-23 99.4
MS.gene014641.t1 MTR_2g090905 54.321 81 31 1 64 138 37 117 1.11e-22 92.0
MS.gene014641.t1 MTR_8g089880 53.623 69 32 0 66 134 127 195 3.97e-22 94.7
MS.gene014641.t1 MTR_5g064990 37.405 131 74 3 15 141 67 193 1.03e-21 95.1
MS.gene014641.t1 MTR_2g436100 33.099 142 87 2 5 138 24 165 1.26e-21 93.6
MS.gene014641.t1 MTR_5g064890 43.478 92 52 0 43 134 105 196 5.48e-21 92.8
MS.gene014641.t1 MTR_5g034790 35.000 140 78 1 8 134 45 184 1.02e-20 92.0
MS.gene014641.t1 MTR_2g009310 36.957 138 70 2 14 134 66 203 1.07e-20 92.4
MS.gene014641.t1 MTR_6g055030 34.375 128 73 2 10 134 49 168 1.78e-20 90.9
MS.gene014641.t1 MTR_8g023400 52.778 72 33 1 66 137 92 162 6.74e-20 89.4
MS.gene014641.t1 MTR_5g030010 35.659 129 71 4 66 189 122 243 9.68e-20 89.4
MS.gene014641.t1 MTR_4g093830 52.174 69 33 0 66 134 126 194 1.08e-19 89.4
MS.gene014641.t1 MTR_5g076990 34.109 129 81 1 10 134 20 148 1.09e-19 88.6
MS.gene014641.t1 MTR_8g009190 32.278 158 97 4 6 156 17 171 2.28e-19 87.8
MS.gene014641.t1 MTR_3g091620 42.667 75 43 0 63 137 98 172 2.71e-19 88.2
MS.gene014641.t1 MTR_3g464780 45.455 88 42 2 60 141 96 183 3.49e-19 86.3
MS.gene014641.t1 MTR_8g092840 47.436 78 40 1 64 140 111 188 4.95e-19 85.1
MS.gene014641.t1 MTR_8g092960 47.436 78 40 1 64 140 101 178 5.29e-19 84.7
MS.gene014641.t1 MTR_8g092985 44.444 81 44 1 61 140 106 186 1.02e-18 83.6
MS.gene014641.t1 MTR_2g096350 40.816 98 55 2 56 150 96 193 1.21e-18 83.6
MS.gene014641.t1 MTR_5g024730 30.201 149 93 3 23 168 33 173 1.46e-18 83.6
MS.gene014641.t1 MTR_7g076250 40.217 92 50 2 64 150 61 152 1.73e-18 82.4
MS.gene014641.t1 MTR_8g066740 33.333 135 85 2 5 134 14 148 2.20e-18 84.7
MS.gene014641.t1 MTR_4g063070 34.711 121 69 3 24 134 258 378 2.87e-18 85.5
MS.gene014641.t1 MTR_2g044570 58.730 63 23 1 75 134 63 125 3.94e-18 84.0
MS.gene014641.t1 MTR_8g093010 45.000 80 43 1 62 140 103 182 5.70e-18 82.0
MS.gene014641.t1 MTR_3g095560 44.444 81 44 1 61 140 104 184 8.59e-18 81.6
MS.gene014641.t1 MTR_1g492830 32.593 135 83 3 11 139 3 135 9.22e-18 81.3
MS.gene014641.t1 MTR_7g116220 40.244 82 46 1 63 141 67 148 1.02e-17 80.1
MS.gene014641.t1 MTR_7g096690 31.902 163 93 8 15 166 14 169 2.09e-17 82.0
MS.gene014641.t1 MTR_8g066780 33.728 169 94 7 14 173 58 217 2.10e-17 82.4
MS.gene014641.t1 MTR_1g070140 43.056 72 40 1 64 134 101 172 2.18e-17 82.4
MS.gene014641.t1 MTR_5g071930 47.368 76 37 1 66 141 66 138 3.05e-17 79.3
MS.gene014641.t1 MTR_8g073120 32.540 126 68 3 14 134 27 140 3.88e-17 79.3
MS.gene014641.t1 MTR_1g043410 34.559 136 70 6 14 134 34 165 4.46e-17 81.3
MS.gene014641.t1 MTR_1g070425 43.750 80 39 2 66 139 68 147 4.90e-17 78.2
MS.gene014641.t1 MTR_7g116180 43.750 80 39 2 66 139 67 146 5.14e-17 78.2
MS.gene014641.t1 MTR_8g092930 44.737 76 41 1 66 140 112 187 5.27e-17 79.3
MS.gene014641.t1 MTR_5g092790 48.684 76 37 1 66 139 157 232 5.29e-17 79.7
MS.gene014641.t1 MTR_4g094725 43.210 81 44 1 60 138 72 152 6.10e-17 77.4
MS.gene014641.t1 MTR_3g071300 32.520 123 74 2 16 134 31 148 7.21e-17 77.8
MS.gene014641.t1 MTR_5g026720 31.452 124 77 2 16 134 15 135 1.03e-16 77.0
MS.gene014641.t1 MTR_5g092750 48.684 76 36 2 66 138 157 232 1.69e-16 78.2
MS.gene014641.t1 MTR_1g074190 41.333 75 38 1 66 134 99 173 2.06e-16 79.7
MS.gene014641.t1 MTR_7g117540 51.471 68 32 1 67 134 77 143 2.86e-16 78.6
MS.gene014641.t1 MTR_8g027980 42.708 96 42 4 69 159 93 180 3.20e-16 77.8
MS.gene014641.t1 MTR_3g078120 32.520 123 79 2 16 134 5 127 3.40e-16 75.1
MS.gene014641.t1 MTR_3g094000 38.824 85 50 1 57 139 82 166 3.62e-16 75.9
MS.gene014641.t1 MTR_3g086700 46.377 69 34 1 69 134 49 117 3.62e-16 76.3
MS.gene014641.t1 MTR_3g086730 33.333 129 64 4 16 134 1 117 4.75e-16 76.6
MS.gene014641.t1 MTR_3g078470 45.070 71 37 1 66 134 76 146 5.86e-16 76.3
MS.gene014641.t1 MTR_7g079280 40.845 71 40 1 66 134 80 150 7.49e-16 75.1
MS.gene014641.t1 MTR_5g026730 31.333 150 82 4 7 144 6 146 8.74e-16 74.7
MS.gene014641.t1 MTR_3g078450 47.222 72 34 2 66 134 76 146 9.30e-16 75.5
MS.gene014641.t1 MTR_2g035800 40.476 84 48 1 58 141 70 151 1.05e-15 73.9
MS.gene014641.t1 MTR_3g116000 33.333 123 78 3 16 137 30 149 1.37e-15 74.7
MS.gene014641.t1 MTR_4g030070 39.286 84 50 1 51 134 70 152 1.42e-15 75.5
MS.gene014641.t1 MTR_2g055790 46.377 69 34 1 66 134 77 142 1.54e-15 74.7
MS.gene014641.t1 MTR_8g032690 45.161 62 30 1 92 149 19 80 1.81e-15 72.0
MS.gene014641.t1 MTR_1g100737 38.158 76 42 1 64 134 90 165 5.44e-15 72.8
MS.gene014641.t1 MTR_7g073200 38.462 78 48 0 57 134 72 149 6.75e-15 72.4
MS.gene014641.t1 MTR_7g116200 44.928 69 37 1 66 134 68 135 8.59e-15 72.0
MS.gene014641.t1 MTR_4g056590 36.842 76 45 1 62 137 96 168 1.23e-14 72.0
MS.gene014641.t1 MTR_3g012550 30.882 136 85 3 7 134 16 150 1.98e-14 70.9
MS.gene014641.t1 MTR_7g108855 39.759 83 46 2 67 146 67 148 2.05e-14 71.2
MS.gene014641.t1 MTR_8g092970 56.000 50 22 0 91 140 130 179 2.50e-14 71.6
MS.gene014641.t1 MTR_8g028465 37.681 69 41 1 66 134 90 156 2.97e-14 71.2
MS.gene014641.t1 MTR_8g092990 56.000 50 22 0 91 140 140 189 3.38e-14 71.6
MS.gene014641.t1 MTR_5g082940 43.750 80 41 2 58 134 67 145 4.00e-14 70.1
MS.gene014641.t1 MTR_8g019710 45.455 66 35 1 74 139 37 101 7.09e-14 68.6
MS.gene014641.t1 MTR_6g007680 28.926 121 73 2 17 137 4 111 9.98e-14 68.6
MS.gene014641.t1 MTR_7g116210 43.478 69 38 1 66 134 10 77 1.39e-13 67.0
MS.gene014641.t1 MTR_8g028815 46.032 63 33 1 73 134 73 135 1.62e-13 68.2
MS.gene014641.t1 MTR_1g056350 36.000 75 45 1 63 134 71 145 2.23e-13 67.8
MS.gene014641.t1 MTR_3g114500 41.176 85 44 2 56 134 29 113 2.23e-13 66.6
MS.gene014641.t1 MTR_4g022410 35.156 128 65 4 13 137 46 158 2.43e-13 68.2
MS.gene014641.t1 MTR_7g059360 54.717 53 24 0 85 137 151 203 2.61e-13 68.9
MS.gene014641.t1 MTR_2g041200 63.636 44 16 0 91 134 108 151 2.72e-13 67.8
MS.gene014641.t1 MTR_8g099495 51.020 49 24 0 92 140 347 395 2.77e-13 70.9
MS.gene014641.t1 MTR_5g022920 36.145 83 45 2 54 134 155 231 5.92e-13 67.8
MS.gene014641.t1 MTR_8g074900 42.254 71 37 2 64 134 156 222 8.74e-13 67.4
MS.gene014641.t1 MTR_6g055030 63.415 41 15 0 94 134 97 137 1.15e-12 67.8
MS.gene014641.t1 MTR_1g090480 35.616 73 43 1 66 134 72 144 1.37e-12 65.5
MS.gene014641.t1 MTR_3g078520 37.143 70 43 1 66 134 76 145 1.66e-12 65.5
MS.gene014641.t1 MTR_3g081030 39.080 87 46 2 54 134 76 161 2.94e-12 65.5
MS.gene014641.t1 MTR_1g026070 38.889 72 41 1 63 134 45 113 3.23e-12 63.5
MS.gene014641.t1 MTR_7g079290 32.877 73 45 1 66 134 125 197 3.38e-12 65.5
MS.gene014641.t1 MTR_8g071815 31.496 127 72 5 13 134 16 132 5.42e-12 64.3
MS.gene014641.t1 MTR_7g117350 51.163 43 21 0 92 134 322 364 7.64e-12 66.2
MS.gene014641.t1 MTR_7g117350 51.163 43 21 0 92 134 314 356 8.66e-12 65.9
MS.gene014641.t1 MTR_5g041330 37.647 85 47 3 51 135 69 147 9.41e-12 64.3
MS.gene014641.t1 MTR_5g041310 37.647 85 47 3 51 135 79 157 9.95e-12 64.3
MS.gene014641.t1 MTR_1g090450 34.646 127 69 4 18 134 27 149 1.31e-11 62.4
MS.gene014641.t1 MTR_3g087900 60.000 45 16 2 91 134 68 111 1.56e-11 62.4
MS.gene014641.t1 MTR_1g090460 34.409 93 55 2 48 134 45 137 3.37e-11 61.2
MS.gene014641.t1 MTR_6g007670 39.394 66 39 1 72 137 14 78 4.10e-11 62.8
MS.gene014641.t1 MTR_4g108830 34.783 92 52 3 49 134 99 188 4.90e-11 61.6
MS.gene014641.t1 MTR_4g108830 34.783 92 52 3 49 134 127 216 5.69e-11 62.0
MS.gene014641.t1 MTR_8g072020 40.741 81 42 4 71 146 423 502 5.84e-11 63.9
MS.gene014641.t1 MTR_8g072020 40.741 81 42 4 71 146 384 463 5.85e-11 63.9
MS.gene014641.t1 MTR_8g099515 51.163 43 21 0 92 134 337 379 5.95e-11 63.5
MS.gene014641.t1 MTR_4g102870 47.273 55 28 1 86 140 310 363 6.02e-11 63.5
MS.gene014641.t1 MTR_5g009210 51.064 47 23 0 92 138 315 361 6.07e-11 63.5
MS.gene014641.t1 MTR_5g009190 36.000 75 46 1 66 138 266 340 6.77e-11 63.2
MS.gene014641.t1 MTR_8g027745 44.231 52 28 1 83 134 306 356 9.76e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014641.t1 AT2G20030 40.580 345 170 10 10 326 39 376 1.86e-69 222
MS.gene014641.t1 AT4G28890 36.930 417 170 11 2 338 27 430 6.64e-68 219
MS.gene014641.t1 AT5G05810 32.759 348 173 11 10 298 56 401 1.60e-35 134
MS.gene014641.t1 AT4G40070 45.255 137 63 4 3 134 37 166 8.55e-32 122
MS.gene014641.t1 AT1G72200 44.697 132 60 4 10 134 61 186 1.33e-30 120
MS.gene014641.t1 AT3G05200 39.568 139 69 4 8 139 45 175 8.74e-29 115
MS.gene014641.t1 AT1G22500 41.860 129 68 3 9 134 36 160 3.27e-27 110
MS.gene014641.t1 AT2G35000 35.135 148 84 4 15 151 51 197 1.36e-25 106
MS.gene014641.t1 AT1G23980 37.681 138 75 2 8 134 49 186 6.76e-25 103
MS.gene014641.t1 AT4G17920 38.971 136 72 3 8 134 19 152 8.99e-25 102
MS.gene014641.t1 AT1G35330 39.535 129 74 2 10 134 43 171 1.13e-24 102
MS.gene014641.t1 AT5G27420 39.844 128 61 4 19 139 53 171 1.52e-24 103
MS.gene014641.t1 AT4G30400 62.500 72 26 1 64 134 105 176 1.33e-23 101
MS.gene014641.t1 AT5G57750 38.129 139 78 3 3 134 27 164 1.46e-23 97.1
MS.gene014641.t1 AT5G17600 37.255 153 87 5 14 161 61 209 2.45e-23 99.8
MS.gene014641.t1 AT5G46650 37.226 137 73 4 11 134 21 157 4.42e-23 97.4
MS.gene014641.t1 AT2G18650 61.111 72 27 1 64 134 97 168 5.38e-23 99.4
MS.gene014641.t1 AT4G09120 56.944 72 28 1 66 134 94 165 7.15e-23 98.2
MS.gene014641.t1 AT3G16720 54.795 73 32 1 66 138 94 165 4.09e-22 95.1
MS.gene014641.t1 AT5G40250 34.932 146 75 3 8 134 41 185 5.01e-22 95.9
MS.gene014641.t1 AT4G33565 52.632 76 36 0 66 141 191 266 9.47e-22 95.1
MS.gene014641.t1 AT4G09110 52.778 72 31 1 66 134 94 165 1.35e-21 93.6
MS.gene014641.t1 AT4G09130 40.678 118 58 3 63 177 88 196 1.91e-21 94.4
MS.gene014641.t1 AT2G34990 34.074 135 84 2 5 134 26 160 2.80e-21 93.2
MS.gene014641.t1 AT2G34990 36.029 136 80 4 5 134 4 138 2.96e-21 92.8
MS.gene014641.t1 AT2G35420 36.691 139 75 3 2 134 14 145 3.05e-21 91.7
MS.gene014641.t1 AT4G15975 46.914 81 42 1 58 138 43 122 4.01e-21 90.9
MS.gene014641.t1 AT3G48030 39.286 140 73 6 14 142 41 179 1.42e-20 90.1
MS.gene014641.t1 AT5G10380 52.778 72 34 0 66 137 109 180 1.70e-20 90.5
MS.gene014641.t1 AT3G48030 39.286 140 73 6 14 142 119 257 1.81e-20 91.3
MS.gene014641.t1 AT3G03550 48.052 77 39 1 67 142 134 210 3.33e-20 90.5
MS.gene014641.t1 AT3G18773 36.029 136 72 4 13 140 50 178 1.31e-19 86.7
MS.gene014641.t1 AT3G60220 55.844 77 29 2 71 142 93 169 3.66e-19 87.4
MS.gene014641.t1 AT4G09100 45.833 72 36 1 66 134 56 127 5.63e-19 82.4
MS.gene014641.t1 AT1G53820 47.297 74 38 1 64 137 93 165 9.98e-19 85.9
MS.gene014641.t1 AT4G17905 32.394 142 79 3 10 134 56 197 1.01e-18 85.9
MS.gene014641.t1 AT1G72220 48.571 70 36 0 65 134 150 219 1.02e-18 87.0
MS.gene014641.t1 AT1G04360 33.571 140 70 4 14 137 47 179 1.67e-18 85.9
MS.gene014641.t1 AT5G43420 31.081 148 68 3 14 134 40 180 2.24e-18 85.5
MS.gene014641.t1 AT4G17905 32.394 142 79 3 10 134 82 223 2.47e-18 85.1
MS.gene014641.t1 AT2G42360 33.071 127 71 2 13 138 41 154 3.21e-18 83.2
MS.gene014641.t1 AT2G42350 46.154 78 41 1 66 143 75 151 5.86e-18 82.0
MS.gene014641.t1 AT3G10910 39.773 88 50 1 47 134 72 156 9.65e-18 80.5
MS.gene014641.t1 AT1G49220 45.556 90 43 3 54 140 97 183 1.01e-17 82.0
MS.gene014641.t1 AT1G49210 46.154 78 41 1 64 140 106 183 1.05e-17 81.3
MS.gene014641.t1 AT1G76410 35.714 126 75 3 14 137 28 149 1.07e-17 80.5
MS.gene014641.t1 AT2G47560 48.052 77 38 1 64 138 78 154 1.28e-17 81.3
MS.gene014641.t1 AT1G20823 35.878 131 73 4 14 137 30 156 1.37e-17 80.5
MS.gene014641.t1 AT2G27940 30.827 133 75 4 15 134 54 182 1.79e-17 80.9
MS.gene014641.t1 AT1G49200 42.857 84 47 1 58 140 101 184 1.99e-17 80.5
MS.gene014641.t1 AT1G72310 48.684 76 34 2 64 137 100 172 3.90e-17 81.3
MS.gene014641.t1 AT5G01880 42.254 71 41 0 65 135 78 148 4.24e-17 77.8
MS.gene014641.t1 AT1G49230 36.522 115 67 2 61 174 99 208 6.86e-17 79.0
MS.gene014641.t1 AT2G17450 42.353 85 42 2 60 137 63 147 8.59e-17 77.8
MS.gene014641.t1 AT5G66160 34.752 141 72 5 10 148 161 283 8.81e-17 80.1
MS.gene014641.t1 AT5G66160 34.752 141 72 5 10 148 161 283 1.70e-16 79.0
MS.gene014641.t1 AT3G62690 44.595 74 41 0 67 140 88 161 1.78e-16 78.6
MS.gene014641.t1 AT1G32361 40.698 86 47 2 50 134 114 196 3.06e-16 79.0
MS.gene014641.t1 AT3G18930 41.463 82 38 1 66 137 120 201 3.10e-16 79.7
MS.gene014641.t1 AT3G18930 41.463 82 38 1 66 137 120 201 3.10e-16 79.7
MS.gene014641.t1 AT3G18930 41.463 82 38 1 66 137 120 201 3.10e-16 79.7
MS.gene014641.t1 AT3G14320 47.826 69 35 1 66 134 63 130 3.86e-16 76.6
MS.gene014641.t1 AT5G05280 33.333 123 72 4 14 134 41 155 7.22e-16 75.1
MS.gene014641.t1 AT4G10150 34.677 124 71 4 18 134 33 153 8.75e-16 76.3
MS.gene014641.t1 AT3G19140 44.186 86 45 2 65 150 53 135 8.87e-16 73.9
MS.gene014641.t1 AT2G46493 31.579 133 73 4 11 134 57 180 9.80e-16 74.7
MS.gene014641.t1 AT1G74410 41.892 74 43 0 66 139 150 223 2.26e-15 74.7
MS.gene014641.t1 AT1G28040 35.870 92 51 2 48 134 207 295 2.70e-15 75.9
MS.gene014641.t1 AT2G34000 31.496 127 73 2 16 138 21 137 5.47e-15 72.0
MS.gene014641.t1 AT2G35910 39.130 69 42 0 66 134 121 189 6.31e-15 73.2
MS.gene014641.t1 AT1G33480 31.613 155 90 4 62 216 71 209 7.69e-15 73.9
MS.gene014641.t1 AT4G35480 37.079 89 41 1 64 137 70 158 1.77e-14 71.6
MS.gene014641.t1 AT4G10160 43.478 69 38 1 66 134 72 139 2.23e-14 72.0
MS.gene014641.t1 AT1G80400 31.250 144 63 5 21 140 271 402 2.41e-14 73.9
MS.gene014641.t1 AT2G46160 36.364 77 41 1 66 134 104 180 2.59e-14 71.6
MS.gene014641.t1 AT2G46160 36.364 77 41 1 66 134 104 180 2.59e-14 71.6
MS.gene014641.t1 AT5G07040 30.147 136 78 5 10 134 7 136 5.60e-14 69.3
MS.gene014641.t1 AT3G61550 33.735 83 44 1 63 134 96 178 8.81e-14 70.1
MS.gene014641.t1 AT2G46495 31.579 133 65 4 16 134 242 362 2.25e-13 70.9
MS.gene014641.t1 AT4G30370 38.028 71 44 0 64 134 87 157 3.34e-13 67.4
MS.gene014641.t1 AT3G20395 42.029 69 38 1 66 134 147 213 5.39e-13 67.8
MS.gene014641.t1 AT5G66070 34.314 102 54 3 44 134 119 218 5.65e-13 67.8
MS.gene014641.t1 AT5G66070 34.314 102 54 3 44 134 119 218 5.65e-13 67.8
MS.gene014641.t1 AT5G58580 30.667 150 86 5 64 195 109 258 5.79e-13 68.9
MS.gene014641.t1 AT2G46494 32.331 133 76 5 11 134 231 358 6.73e-13 69.3
MS.gene014641.t1 AT5G66070 41.096 73 41 1 62 134 172 242 9.13e-13 67.8
MS.gene014641.t1 AT2G46495 36.000 75 45 1 63 134 260 334 1.12e-12 68.6
MS.gene014641.t1 AT5G06490 36.842 76 41 1 66 134 96 171 1.35e-12 66.2
MS.gene014641.t1 AT1G26800 40.625 64 32 2 72 135 98 155 1.62e-12 66.2
MS.gene014641.t1 AT5G47610 46.774 62 32 1 74 134 88 149 1.67e-12 65.5
MS.gene014641.t1 AT3G11110 28.926 121 78 2 15 134 36 149 2.53e-12 64.7
MS.gene014641.t1 AT4G11370 28.358 134 89 3 4 135 3 131 2.54e-12 64.7
MS.gene014641.t1 AT5G53110 38.961 77 45 1 60 134 296 372 2.66e-12 67.8
MS.gene014641.t1 AT1G53010 30.303 165 82 6 7 140 16 178 3.40e-12 64.7
MS.gene014641.t1 AT4G17245 60.000 45 17 1 91 134 101 145 3.51e-12 64.3
MS.gene014641.t1 AT2G18670 32.231 121 81 1 15 134 32 152 3.59e-12 64.7
MS.gene014641.t1 AT2G37580 51.667 60 28 1 79 137 128 187 4.14e-12 65.5
MS.gene014641.t1 AT3G61460 31.496 127 77 4 14 134 15 137 4.19e-12 64.3
MS.gene014641.t1 AT4G24015 50.000 60 29 1 85 144 99 157 5.82e-12 63.9
MS.gene014641.t1 AT4G35840 38.889 72 41 1 66 134 162 233 7.30e-12 65.1
MS.gene014641.t1 AT1G63170 60.000 45 17 1 91 135 324 367 1.14e-11 65.9
MS.gene014641.t1 AT4G26400 39.726 73 37 2 69 141 224 289 1.30e-11 65.5
MS.gene014641.t1 AT4G26400 39.726 73 37 2 69 141 224 289 1.30e-11 65.5
MS.gene014641.t1 AT2G25410 37.500 72 42 1 66 134 298 369 1.75e-11 65.1
MS.gene014641.t1 AT5G56340 38.202 89 47 3 69 156 242 323 2.32e-11 64.7
MS.gene014641.t1 AT2G17730 37.500 72 42 1 66 134 167 238 3.32e-11 63.2
MS.gene014641.t1 AT1G12760 36.000 100 33 3 66 135 297 395 4.58e-11 63.9
MS.gene014641.t1 AT1G12760 36.000 100 33 3 66 135 226 324 6.15e-11 63.2
MS.gene014641.t1 AT4G11360 43.750 64 33 2 73 134 67 129 8.55e-11 60.1
MS.gene014641.t1 AT3G19950 34.667 75 48 1 67 141 191 264 8.87e-11 62.8
MS.gene014641.t1 AT1G14200 37.500 64 38 2 72 135 90 151 9.97e-11 60.5

Find 47 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAATTCTCTTCTTTAAA+AGG 0.139116 3.1:-87912975 MS.gene014641:CDS
CTTGAAATTCCATGAAATTC+AGG 0.251567 3.1:+87912447 None:intergenic
TGAATAAAGATTTCAAGATT+TGG 0.257283 3.1:+87912717 None:intergenic
AGATTCTCTCCTGAATTTCA+TGG 0.283990 3.1:-87912456 MS.gene014641:CDS
TTTGGGTTTAGAAGATGAAT+AGG 0.294571 3.1:+87913089 None:intergenic
ATGAGAGGATGTGGAGGATT+TGG 0.333871 3.1:-87912296 MS.gene014641:CDS
TTACTTGGAGTCACACCTTT+TGG 0.335949 3.1:+87913194 None:intergenic
GAATAAAGATTTCAAGATTT+GGG 0.337955 3.1:+87912718 None:intergenic
GGTACATTCTAAGCCTTGTT+TGG 0.350953 3.1:+87912950 None:intergenic
ACTCTACTTGTCCTCTTTGC+AGG 0.359957 3.1:-87912827 MS.gene014641:CDS
CTTAATCTTCAAAACAATCT+AGG 0.372210 3.1:-87913062 MS.gene014641:CDS
TGAAAAGCATGCTTGCATTT+CGG 0.375773 3.1:+87912882 None:intergenic
CGATCGAGGTCTATAAATTC+TGG 0.391790 3.1:-87913032 MS.gene014641:CDS
TGAACTGTTCTCCTTGCAAT+TGG 0.394010 3.1:+87912270 None:intergenic
CTGCTGATTTCGACAAACCT+TGG 0.401436 3.1:+87912342 None:intergenic
ATTATTACAACACCTTTACT+TGG 0.404385 3.1:+87913179 None:intergenic
TTTGAAGATTAAGAGAGTTT+GGG 0.405592 3.1:+87913072 None:intergenic
GGGTCCTCGCTTAAATTTGA+AGG 0.429221 3.1:+87912738 None:intergenic
AGCAGAAGAAGCGGGGAGAA+TGG 0.451139 3.1:-87912324 MS.gene014641:CDS
AAAGAAGAGAATTTGAAGAA+AGG 0.452758 3.1:+87912981 None:intergenic
TTCAAATTTCGATAAACAAA+CGG 0.467871 3.1:+87912929 None:intergenic
CTTCTTGATCATGAAGAAAG+TGG 0.478062 3.1:-87912639 MS.gene014641:CDS
TTGCAAGGAGAACAGTTCAA+TGG 0.492911 3.1:-87912266 MS.gene014641:CDS
ATGGAAGTGATGAGAGGATG+TGG 0.493739 3.1:-87912305 MS.gene014641:CDS
TCGTTTACAGCATTGAATCC+TGG 0.495608 3.1:-87912399 MS.gene014641:CDS
TCGAAATCAGCAGAAGAAGC+GGG 0.512061 3.1:-87912332 MS.gene014641:CDS
ACATGAATTGTATTGACAAG+TGG 0.534529 3.1:-87912860 MS.gene014641:CDS
GGTCCTCGCTTAAATTTGAA+GGG 0.544773 3.1:+87912739 None:intergenic
CTGAGATATCAAAAGTTCCA+AGG 0.562845 3.1:-87912359 MS.gene014641:CDS
AACATGGCAGAGTTACCAAA+AGG 0.573528 3.1:-87913209 MS.gene014641:CDS
GGATTTGGATGCCAATTGCA+AGG 0.578152 3.1:-87912281 MS.gene014641:CDS
TAATCTCTGATGTTGTTACA+AGG 0.580401 3.1:-87912554 MS.gene014641:CDS
TCTTTAAAAGGATCCAAACA+AGG 0.584756 3.1:-87912963 MS.gene014641:CDS
TTATGATTAATCATATGCAA+AGG 0.586045 3.1:+87912582 None:intergenic
GTCGAAATCAGCAGAAGAAG+CGG 0.588001 3.1:-87912333 MS.gene014641:CDS
AAAGGTGTGACTCCAAGTAA+AGG 0.592691 3.1:-87913191 MS.gene014641:CDS
GGGAGAATGGAAGTGATGAG+AGG 0.593662 3.1:-87912311 MS.gene014641:CDS
GACATACTCCTCTTCTCACC+AGG 0.596787 3.1:+87912381 None:intergenic
CATTGAATCCTGGTGAGAAG+AGG 0.597963 3.1:-87912389 MS.gene014641:CDS
CTGATGTTGTTACAAGGAGT+AGG 0.615884 3.1:-87912548 MS.gene014641:CDS
TCAACTATGTACCTGCAAAG+AGG 0.618892 3.1:+87912816 None:intergenic
ATGTTGTTACAAGGAGTAGG+TGG 0.631868 3.1:-87912545 MS.gene014641:CDS
AGTCCCTTCAAATTTAAGCG+AGG 0.644076 3.1:-87912742 MS.gene014641:CDS
GAAGCAGCAATGTTACAAAG+TGG 0.645960 3.1:-87912617 MS.gene014641:CDS
CGAAATCAGCAGAAGAAGCG+GGG 0.650570 3.1:-87912331 MS.gene014641:CDS
GAAGTGATGAGAGGATGTGG+AGG 0.674444 3.1:-87912302 MS.gene014641:CDS
ATCTAGGACAAACTCGATCG+AGG 0.681413 3.1:-87913046 MS.gene014641:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGTTAAGAAAAACATTA+TGG + chr3.1:87912261-87912280 None:intergenic 15.0%
!! GAATAAAGATTTCAAGATTT+GGG + chr3.1:87912691-87912710 None:intergenic 20.0%
!! TGAATAAAGATTTCAAGATT+TGG + chr3.1:87912692-87912711 None:intergenic 20.0%
!! TTATGATTAATCATATGCAA+AGG + chr3.1:87912827-87912846 None:intergenic 20.0%
!! TTCAAATTCTCTTCTTTAAA+AGG - chr3.1:87912431-87912450 MS.gene014641:CDS 20.0%
!! TTCAAATTTCGATAAACAAA+CGG + chr3.1:87912480-87912499 None:intergenic 20.0%
! AAAGAAGAGAATTTGAAGAA+AGG + chr3.1:87912428-87912447 None:intergenic 25.0%
! ATTATTACAACACCTTTACT+TGG + chr3.1:87912230-87912249 None:intergenic 25.0%
! CTTAATCTTCAAAACAATCT+AGG - chr3.1:87912344-87912363 MS.gene014641:CDS 25.0%
! TTTGAAGATTAAGAGAGTTT+GGG + chr3.1:87912337-87912356 None:intergenic 25.0%
!! TTTTTGTTCTTTCTTTGTGA+CGG + chr3.1:87912722-87912741 None:intergenic 25.0%
!!! TTTTGAAGATTAAGAGAGTT+TGG + chr3.1:87912338-87912357 None:intergenic 25.0%
CTTGAAATTCCATGAAATTC+AGG + chr3.1:87912962-87912981 None:intergenic 30.0%
TAATCTCTGATGTTGTTACA+AGG - chr3.1:87912852-87912871 MS.gene014641:CDS 30.0%
! ACATGAATTGTATTGACAAG+TGG - chr3.1:87912546-87912565 MS.gene014641:CDS 30.0%
! TCTTTAAAAGGATCCAAACA+AGG - chr3.1:87912443-87912462 MS.gene014641:CDS 30.0%
! TTTGGGTTTAGAAGATGAAT+AGG + chr3.1:87912320-87912339 None:intergenic 30.0%
AGATTCTCTCCTGAATTTCA+TGG - chr3.1:87912950-87912969 MS.gene014641:CDS 35.0%
CTGAGATATCAAAAGTTCCA+AGG - chr3.1:87913047-87913066 MS.gene014641:CDS 35.0%
CTTCTTGATCATGAAGAAAG+TGG - chr3.1:87912767-87912786 MS.gene014641:CDS 35.0%
! TGAAAAGCATGCTTGCATTT+CGG + chr3.1:87912527-87912546 None:intergenic 35.0%
AGTCCCTTCAAATTTAAGCG+AGG - chr3.1:87912664-87912683 MS.gene014641:CDS 40.0%
ATGTTGTTACAAGGAGTAGG+TGG - chr3.1:87912861-87912880 MS.gene014641:CDS 40.0%
CGATCGAGGTCTATAAATTC+TGG - chr3.1:87912374-87912393 MS.gene014641:CDS 40.0%
CTGATGTTGTTACAAGGAGT+AGG - chr3.1:87912858-87912877 MS.gene014641:CDS 40.0%
GAAGCAGCAATGTTACAAAG+TGG - chr3.1:87912789-87912808 MS.gene014641:CDS 40.0%
GGTCCTCGCTTAAATTTGAA+GGG + chr3.1:87912670-87912689 None:intergenic 40.0%
TCAACTATGTACCTGCAAAG+AGG + chr3.1:87912593-87912612 None:intergenic 40.0%
TGAACTGTTCTCCTTGCAAT+TGG + chr3.1:87913139-87913158 None:intergenic 40.0%
TTGCAAGGAGAACAGTTCAA+TGG - chr3.1:87913140-87913159 MS.gene014641:CDS 40.0%
! AAAGGTGTGACTCCAAGTAA+AGG - chr3.1:87912215-87912234 MS.gene014641:CDS 40.0%
! TCGTTTACAGCATTGAATCC+TGG - chr3.1:87913007-87913026 MS.gene014641:CDS 40.0%
! TTACTTGGAGTCACACCTTT+TGG + chr3.1:87912215-87912234 None:intergenic 40.0%
!! GGTACATTCTAAGCCTTGTT+TGG + chr3.1:87912459-87912478 None:intergenic 40.0%
ACTCTACTTGTCCTCTTTGC+AGG - chr3.1:87912579-87912598 MS.gene014641:CDS 45.0%
ATGAGAGGATGTGGAGGATT+TGG - chr3.1:87913110-87913129 MS.gene014641:CDS 45.0%
ATGGAAGTGATGAGAGGATG+TGG - chr3.1:87913101-87913120 MS.gene014641:CDS 45.0%
CATTGAATCCTGGTGAGAAG+AGG - chr3.1:87913017-87913036 MS.gene014641:CDS 45.0%
GGATTTGGATGCCAATTGCA+AGG - chr3.1:87913125-87913144 MS.gene014641:CDS 45.0%
GGGTCCTCGCTTAAATTTGA+AGG + chr3.1:87912671-87912690 None:intergenic 45.0%
GTCGAAATCAGCAGAAGAAG+CGG - chr3.1:87913073-87913092 MS.gene014641:CDS 45.0%
TCGAAATCAGCAGAAGAAGC+GGG - chr3.1:87913074-87913093 MS.gene014641:CDS 45.0%
! ATCTAGGACAAACTCGATCG+AGG - chr3.1:87912360-87912379 MS.gene014641:CDS 45.0%
!! CTGCTGATTTCGACAAACCT+TGG + chr3.1:87913067-87913086 None:intergenic 45.0%
CGAAATCAGCAGAAGAAGCG+GGG - chr3.1:87913075-87913094 MS.gene014641:CDS 50.0%
GAAGTGATGAGAGGATGTGG+AGG - chr3.1:87913104-87913123 MS.gene014641:CDS 50.0%
GACATACTCCTCTTCTCACC+AGG + chr3.1:87913028-87913047 None:intergenic 50.0%
GGGAGAATGGAAGTGATGAG+AGG - chr3.1:87913095-87913114 MS.gene014641:CDS 50.0%
AGCAGAAGAAGCGGGGAGAA+TGG - chr3.1:87913082-87913101 MS.gene014641:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 87912200 87913228 87912200 ID=MS.gene014641
chr3.1 mRNA 87912200 87913228 87912200 ID=MS.gene014641.t1;Parent=MS.gene014641
chr3.1 exon 87912200 87913228 87912200 ID=MS.gene014641.t1.exon1;Parent=MS.gene014641.t1
chr3.1 CDS 87912200 87913228 87912200 ID=cds.MS.gene014641.t1;Parent=MS.gene014641.t1
Gene Sequence

>MS.gene014641

ATGGCAGAGTTACCAAAAGGTGTGACTCCAAGTAAAGGTGTTGTAATAATAGTACTTTCCATAATGTTTTTCTTAACTTTTATCTTACTTGTATATGTCAAATTCTGTCGTGTTACTCCTATTCATCTTCTAAACCCAAACTCTCTTAATCTTCAAAACAATCTAGGACAAACTCGATCGAGGTCTATAAATTCTGGCGTTGAACAAAAAGTAATTGAAACACTTCCTTTCTTCAAATTCTCTTCTTTAAAAGGATCCAAACAAGGCTTAGAATGTACCGTTTGTTTATCGAAATTTGAAGACGAAGAGATTCTGAGATTGTTGCCGAAATGCAAGCATGCTTTTCACATGAATTGTATTGACAAGTGGCTTGAAAGTCACTCTACTTGTCCTCTTTGCAGGTACATAGTTGAAGAAAGTGACATCAGAAACTTCACTTTTTCATTCAGCTCAAGATTCTTAAGAGTCCCTTCAAATTTAAGCGAGGACCCAAATCTTGAAATCTTTATTCAGAGACAACCGTCACAAAGAAAGAACAAAAAAGAAGAACAAGAACATGAACTTGTTCTTCTTGATCATGAAGAAAGTGGAAGCAGCAATGTTACAAAGTGGAAGCAAGAACAACCTTTGCATATGATTAATCATAAAATATTAATCTCTGATGTTGTTACAAGGAGTAGGTGGAGTGATCTTAATTCTTCAGATTTGTTATCATTGAACAGTGAAATGCTTCATGATATGTCAAGCACGAGATTCTCTCCTGAATTTCATGGAATTTCAAGTGTTCATTCTGATGAAGAAGAAAATTCGTTTACAGCATTGAATCCTGGTGAGAAGAGGAGTATGTCTGAGATATCAAAAGTTCCAAGGTTTGTCGAAATCAGCAGAAGAAGCGGGGAGAATGGAAGTGATGAGAGGATGTGGAGGATTTGGATGCCAATTGCAAGGAGAACAGTTCAATGGTTTGCAAGACAAGAAACAAACTCTGCTCAATTACAACAACATAAACATTTAGTTTCAAACGTTTGA
Protein sequence

>MS.gene014641.t1

MAELPKGVTPSKGVVIIVLSIMFFLTFILLVYVKFCRVTPIHLLNPNSLNLQNNLGQTRSRSINSGVEQKVIETLPFFKFSSLKGSKQGLECTVCLSKFEDEEILRLLPKCKHAFHMNCIDKWLESHSTCPLCRYIVEESDIRNFTFSFSSRFLRVPSNLSEDPNLEIFIQRQPSQRKNKKEEQEHELVLLDHEESGSSNVTKWKQEQPLHMINHKILISDVVTRSRWSDLNSSDLLSLNSEMLHDMSSTRFSPEFHGISSVHSDEEENSFTALNPGEKRSMSEISKVPRFVEISRRSGENGSDERMWRIWMPIARRTVQWFARQETNSAQLQQHKHLVSNV