Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014715.t1 | XP_003603557.1 | 99.7 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 4.00E-164 | 587.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014715.t1 | Q94B65 | 81.5 | 324 | 59 | 1 | 1 | 324 | 1 | 323 | 1.2e-135 | 484.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014715.t1 | G7J2T9 | 99.7 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 2.9e-164 | 587.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene014715 | MS.gene032018 | PPI |
MS.gene008096 | MS.gene014715 | PPI |
MS.gene69267 | MS.gene014715 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014715.t1 | MTR_3g109070 | 99.691 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 0.0 | 645 |
MS.gene014715.t1 | MTR_3g109070 | 99.630 | 270 | 1 | 0 | 1 | 270 | 1 | 270 | 0.0 | 531 |
MS.gene014715.t1 | MTR_3g109070 | 99.550 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 3.94e-158 | 442 |
MS.gene014715.t1 | MTR_2g085160 | 27.835 | 291 | 191 | 4 | 33 | 306 | 40 | 328 | 4.13e-25 | 103 |
MS.gene014715.t1 | MTR_2g085160 | 28.511 | 235 | 166 | 1 | 72 | 306 | 37 | 269 | 7.75e-24 | 99.0 |
MS.gene014715.t1 | MTR_5g091610 | 86.000 | 50 | 7 | 0 | 222 | 271 | 192 | 241 | 1.27e-18 | 84.3 |
MS.gene014715.t1 | MTR_1g012590 | 28.696 | 230 | 147 | 4 | 18 | 232 | 41 | 268 | 6.30e-18 | 82.8 |
MS.gene014715.t1 | MTR_1g012590 | 28.507 | 221 | 137 | 4 | 18 | 217 | 41 | 261 | 2.24e-17 | 80.9 |
MS.gene014715.t1 | MTR_3g463360 | 24.904 | 261 | 185 | 4 | 16 | 267 | 103 | 361 | 2.04e-15 | 76.6 |
MS.gene014715.t1 | MTR_4g113270 | 28.077 | 260 | 163 | 7 | 20 | 265 | 18 | 267 | 3.88e-13 | 69.7 |
MS.gene014715.t1 | MTR_4g113270 | 28.077 | 260 | 163 | 7 | 20 | 265 | 18 | 267 | 4.58e-13 | 69.3 |
MS.gene014715.t1 | MTR_2g094640 | 23.077 | 312 | 224 | 8 | 7 | 311 | 2 | 304 | 1.60e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014715.t1 | AT4G31600 | 81.481 | 324 | 59 | 1 | 1 | 324 | 1 | 323 | 0.0 | 536 |
MS.gene014715.t1 | AT4G31600 | 80.531 | 226 | 43 | 1 | 1 | 226 | 1 | 225 | 1.00e-126 | 365 |
MS.gene014715.t1 | AT2G14695 | 28.840 | 319 | 208 | 6 | 4 | 306 | 29 | 344 | 2.64e-33 | 125 |
MS.gene014715.t1 | AT4G32272 | 30.565 | 301 | 193 | 6 | 18 | 304 | 42 | 340 | 3.32e-33 | 125 |
MS.gene014715.t1 | AT4G32272 | 30.272 | 294 | 189 | 6 | 25 | 304 | 64 | 355 | 2.07e-31 | 121 |
MS.gene014715.t1 | AT5G19980 | 25.740 | 338 | 213 | 11 | 4 | 323 | 5 | 322 | 6.06e-12 | 66.2 |
Find 74 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACCTTTGGTTTCTTCTTAC+TGG | 0.055823 | 3.1:-86962672 | MS.gene014715:CDS |
AATAATACAGATAAAGAATA+TGG | 0.225037 | 3.1:+86963949 | None:intergenic |
ACGATTGTGGGTGTTCTTAA+AGG | 0.250800 | 3.1:-86962869 | MS.gene014715:CDS |
AATGACTCTCCTCACTTTGC+AGG | 0.263355 | 3.1:-86965668 | MS.gene014715:intron |
AAGCGGTGTAAGCCTCTTTA+TGG | 0.268525 | 3.1:+86964981 | None:intergenic |
TTATTGTTTCTTCAGACCTT+TGG | 0.300445 | 3.1:-86962686 | MS.gene014715:intron |
CCATCACCAACGAAAGAATA+AGG | 0.367155 | 3.1:+86962951 | None:intergenic |
AAGAGCAAGAGGGGTAGATT+TGG | 0.380015 | 3.1:-86965103 | MS.gene014715:CDS |
TGCCAATGTCGCATTTGCTT+TGG | 0.382847 | 3.1:-86965040 | MS.gene014715:CDS |
CCTTATTCTTTCGTTGGTGA+TGG | 0.391406 | 3.1:-86962951 | MS.gene014715:CDS |
ACCTTTGGTTTCTTCTTACT+GGG | 0.392493 | 3.1:-86962671 | MS.gene014715:CDS |
ACTTATCGCTGGATGTTTCA+TGG | 0.394022 | 3.1:-86964953 | MS.gene014715:CDS |
GAAACCATTACCTGAGTTGT+AGG | 0.403057 | 3.1:+86964919 | None:intergenic |
GATATTGACTCCTTTCAAAC+TGG | 0.405917 | 3.1:+86965017 | None:intergenic |
TTAATTGCGGCAGTGTCATA+TGG | 0.413226 | 3.1:-86965751 | MS.gene014715:CDS |
AAGCCATGCTATACCCAAAA+AGG | 0.414547 | 3.1:+86964222 | None:intergenic |
GCTTTAACTACAACGATTGT+GGG | 0.428116 | 3.1:-86962881 | MS.gene014715:CDS |
GTGGGTGTTCTTAAAGGAGT+TGG | 0.428224 | 3.1:-86962863 | MS.gene014715:CDS |
GGTGATCCTTATTCTTTCGT+TGG | 0.439674 | 3.1:-86962957 | MS.gene014715:CDS |
CTCTTTATGGCAATATACAT+TGG | 0.440204 | 3.1:+86964994 | None:intergenic |
CGCTGGATGTTTCATGGGGA+AGG | 0.447004 | 3.1:-86964947 | MS.gene014715:CDS |
TGCTTTAACTACAACGATTG+TGG | 0.452237 | 3.1:-86962882 | MS.gene014715:CDS |
TCTTTATGGCAATATACATT+GGG | 0.457891 | 3.1:+86964995 | None:intergenic |
CTTATTCTTTCGTTGGTGAT+GGG | 0.460235 | 3.1:-86962950 | MS.gene014715:CDS |
ATGTTTCTTATTATAGCCAC+AGG | 0.466137 | 3.1:-86963979 | MS.gene014715:CDS |
TCAGTGATATTGACTGCTGC+TGG | 0.467406 | 3.1:-86964281 | MS.gene014715:CDS |
CTTATCGCTGGATGTTTCAT+GGG | 0.470441 | 3.1:-86964952 | MS.gene014715:CDS |
AACGGCCAAGCAACTGCTCC+CGG | 0.482646 | 3.1:-86965079 | MS.gene014715:CDS |
GTCATATGGAATTGCTTCAA+TGG | 0.483225 | 3.1:-86965737 | MS.gene014715:CDS |
TTCCACCAGCACAAGGTACA+TGG | 0.486766 | 3.1:+86964077 | None:intergenic |
ACCACCTTGCTTATACACTT+TGG | 0.489142 | 3.1:-86965144 | MS.gene014715:CDS |
GAAGGGGAGACCTACAACTC+AGG | 0.497232 | 3.1:-86964929 | MS.gene014715:intron |
CTGGATGTTTCATGGGGAAG+GGG | 0.498074 | 3.1:-86964945 | MS.gene014715:CDS |
GTCCATGCTTTGAATGTGAC+TGG | 0.500341 | 3.1:-86962638 | MS.gene014715:CDS |
TGGAATTGCTTCAATGGCAA+TGG | 0.506448 | 3.1:-86965731 | MS.gene014715:CDS |
ATAATACAGATAAAGAATAT+GGG | 0.509077 | 3.1:+86963950 | None:intergenic |
CCGCTTGCTGTACTTATCGC+TGG | 0.512463 | 3.1:-86964964 | MS.gene014715:CDS |
AAGTAGATTCTGCATCGGTT+CGG | 0.516441 | 3.1:+86965871 | None:intergenic |
TTTGCTTTGGCCAGTTTGAA+AGG | 0.517782 | 3.1:-86965027 | MS.gene014715:CDS |
GCAGACCATGTACCTTGTGC+TGG | 0.517953 | 3.1:-86964082 | MS.gene014715:intron |
GGAGTTCTCATAGCAGCCCT+TGG | 0.520280 | 3.1:-86964260 | MS.gene014715:CDS |
TGAAACCGGGAGCAGTTGCT+TGG | 0.523462 | 3.1:+86965074 | None:intergenic |
GGCCAAAGCAAATGCGACAT+TGG | 0.528052 | 3.1:+86965038 | None:intergenic |
CAATGTATATTGCCATAAAG+AGG | 0.533866 | 3.1:-86964993 | MS.gene014715:CDS |
TTTATCTGTATTATTTGCAA+AGG | 0.536255 | 3.1:-86963941 | MS.gene014715:intron |
GCTGGATGTTTCATGGGGAA+GGG | 0.557636 | 3.1:-86964946 | MS.gene014715:CDS |
TGCTTTGAATGTGACTGGAT+TGG | 0.558503 | 3.1:-86962633 | MS.gene014715:CDS |
TCGACCAAAGTGTATAAGCA+AGG | 0.561117 | 3.1:+86965140 | None:intergenic |
GGATTGGTCATCAATACAGC+TGG | 0.566974 | 3.1:-86962617 | MS.gene014715:CDS |
AACAATAGTGCACAAGAACA+TGG | 0.587407 | 3.1:+86962910 | None:intergenic |
ATCCAGTCACATTCAAAGCA+TGG | 0.590853 | 3.1:+86962636 | None:intergenic |
TTTGGTTTCTTCTTACTGGG+TGG | 0.593368 | 3.1:-86962668 | MS.gene014715:CDS |
ATGGGATACACAAGAGCAAG+AGG | 0.593687 | 3.1:-86965114 | MS.gene014715:CDS |
GACCATGTACCTTGTGCTGG+TGG | 0.597252 | 3.1:-86964079 | MS.gene014715:CDS |
ATGTTGATGCAGTTTAATTG+CGG | 0.617199 | 3.1:-86965764 | MS.gene014715:intron |
AGTGAAGGTAGTTACAGATG+TGG | 0.618611 | 3.1:-86962546 | MS.gene014715:CDS |
GAAGGTAGTTACAGATGTGG+AGG | 0.621484 | 3.1:-86962543 | MS.gene014715:CDS |
TCTTAAAGGAGTTGGTTCCA+CGG | 0.622906 | 3.1:-86962855 | MS.gene014715:intron |
TGTTTCTTATTATAGCCACA+GGG | 0.625509 | 3.1:-86963978 | MS.gene014715:CDS |
AAATGAAGTAGATTCTGCAT+CGG | 0.629797 | 3.1:+86965866 | None:intergenic |
GGGATACACAAGAGCAAGAG+GGG | 0.631770 | 3.1:-86965112 | MS.gene014715:CDS |
GCAAACAAACCTGCAAAGTG+AGG | 0.632689 | 3.1:+86965659 | None:intergenic |
TGGGATACACAAGAGCAAGA+GGG | 0.636053 | 3.1:-86965113 | MS.gene014715:CDS |
TCAATACAGCTGGTGGTGTG+TGG | 0.641527 | 3.1:-86962607 | MS.gene014715:CDS |
TTATCGCTGGATGTTTCATG+GGG | 0.645128 | 3.1:-86964951 | MS.gene014715:CDS |
TGCATCGGTTCGGATCTCCA+TGG | 0.657034 | 3.1:+86965881 | None:intergenic |
AAGAGGGGTAGATTTGGCAA+CGG | 0.660709 | 3.1:-86965097 | MS.gene014715:CDS |
CCAGCGATAAGTACAGCAAG+CGG | 0.663001 | 3.1:+86964964 | None:intergenic |
GTTTCTTATTATAGCCACAG+GGG | 0.683514 | 3.1:-86963977 | MS.gene014715:CDS |
TTGGTCATCAATACAGCTGG+TGG | 0.688538 | 3.1:-86962614 | MS.gene014715:CDS |
TGAGAATGGACTTTCATCAG+TGG | 0.688876 | 3.1:-86964043 | MS.gene014715:CDS |
ACCAAAGTGTATAAGCAAGG+TGG | 0.697760 | 3.1:+86965143 | None:intergenic |
ACCCAGTAAGAAGAAACCAA+AGG | 0.700359 | 3.1:+86962670 | None:intergenic |
AGAATATGGGAATTCCCCTG+TGG | 0.758937 | 3.1:+86963963 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATAGTCAAAATAATTA+AGG | + | chr3.1:86962874-86962893 | None:intergenic | 10.0% |
!!! | TGATTTTTTTTTTTTTAAGT+AGG | - | chr3.1:86963163-86963182 | MS.gene014715:intron | 10.0% |
!! | AATAATACAGATAAAGAATA+TGG | + | chr3.1:86964462-86964481 | None:intergenic | 15.0% |
!! | ATAATAAGAAACATCAAAAA+CGG | + | chr3.1:86964423-86964442 | None:intergenic | 15.0% |
!! | ATAATACAGATAAAGAATAT+GGG | + | chr3.1:86964461-86964480 | None:intergenic | 15.0% |
!! | ATTATACAATATAGACAAAT+AGG | + | chr3.1:86965114-86965133 | None:intergenic | 15.0% |
!! | TTTAAGTAGGTTTAAATTAA+GGG | - | chr3.1:86963176-86963195 | MS.gene014715:intron | 15.0% |
!!! | CAGAAAAAAGTATATATATT+TGG | - | chr3.1:86963070-86963089 | MS.gene014715:intron | 15.0% |
!!! | CTTTTTTCTGATTATATTTA+AGG | + | chr3.1:86963060-86963079 | None:intergenic | 15.0% |
!!! | TTATTTTGAGTGAAAAAAAT+AGG | + | chr3.1:86964874-86964893 | None:intergenic | 15.0% |
!!! | TTTTAAGTAGGTTTAAATTA+AGG | - | chr3.1:86963175-86963194 | MS.gene014715:intron | 15.0% |
!! | AAATACAAACAAAAGATGAA+TGG | + | chr3.1:86965653-86965672 | None:intergenic | 20.0% |
!! | AAATGTAATGTTTGTTTGAT+TGG | - | chr3.1:86963842-86963861 | MS.gene014715:intron | 20.0% |
!! | AATCTTGTTGAAAGAAAAAT+AGG | - | chr3.1:86964974-86964993 | MS.gene014715:CDS | 20.0% |
!! | AATGTAATGTTTGTTTGATT+GGG | - | chr3.1:86963843-86963862 | MS.gene014715:intron | 20.0% |
!! | ATCTTGTTGAAAGAAAAATA+GGG | - | chr3.1:86964975-86964994 | MS.gene014715:CDS | 20.0% |
!! | GGAAAAACATACTTATATTT+AGG | - | chr3.1:86962960-86962979 | MS.gene014715:CDS | 20.0% |
!! | TTCCCTAAAAAAAAAGAAAA+AGG | + | chr3.1:86962944-86962963 | None:intergenic | 20.0% |
!! | TTTATCTGTATTATTTGCAA+AGG | - | chr3.1:86964467-86964486 | MS.gene014715:intron | 20.0% |
!!! | AGACCTTTTTCTTTTTTTTT+AGG | - | chr3.1:86962938-86962957 | MS.gene014715:CDS | 20.0% |
!!! | ATTTTGATCTACTTACTATT+AGG | - | chr3.1:86964699-86964718 | MS.gene014715:intron | 20.0% |
!!! | CTTTTATCTTAATGAATTTC+TGG | - | chr3.1:86963960-86963979 | MS.gene014715:CDS | 20.0% |
!!! | GACCTTTTTCTTTTTTTTTA+GGG | - | chr3.1:86962939-86962958 | MS.gene014715:CDS | 20.0% |
!!! | TAAATATAAGCATTTTGGAA+AGG | + | chr3.1:86962996-86963015 | None:intergenic | 20.0% |
!!! | TCAGTTCTAAATTATATCAT+TGG | - | chr3.1:86965190-86965209 | MS.gene014715:intron | 20.0% |
!!! | TTTCTGATTATATTTAAGGT+AGG | + | chr3.1:86963056-86963075 | None:intergenic | 20.0% |
!!! | TTTTTTGTTTGTTAATGTCA+AGG | - | chr3.1:86963526-86963545 | MS.gene014715:intron | 20.0% |
! | AAAATCTCTTGATTAAACTG+TGG | - | chr3.1:86963598-86963617 | MS.gene014715:intron | 25.0% |
! | AAGCACAAAACATTTAGTAT+AGG | + | chr3.1:86964731-86964750 | None:intergenic | 25.0% |
! | AGAACCTAATATTGATACAT+AGG | - | chr3.1:86965621-86965640 | MS.gene014715:intron | 25.0% |
! | AGCACAAAACATTTAGTATA+GGG | + | chr3.1:86964730-86964749 | None:intergenic | 25.0% |
! | AGTGTAAACTCTACTAAAAT+TGG | + | chr3.1:86964063-86964082 | None:intergenic | 25.0% |
! | ATGTAAGTGTAAACATGATT+TGG | + | chr3.1:86963097-86963116 | None:intergenic | 25.0% |
! | CATTATAGAAAAATGAAACC+GGG | + | chr3.1:86963350-86963369 | None:intergenic | 25.0% |
! | GCATTATAGAAAAATGAAAC+CGG | + | chr3.1:86963351-86963370 | None:intergenic | 25.0% |
! | GTATCTATTACTCCATTTAA+AGG | + | chr3.1:86964262-86964281 | None:intergenic | 25.0% |
! | TATGCCTATGTATCAATATT+AGG | + | chr3.1:86965628-86965647 | None:intergenic | 25.0% |
! | TCTTTATGGCAATATACATT+GGG | + | chr3.1:86963416-86963435 | None:intergenic | 25.0% |
! | TTACTCCATTTAAAGGATTA+TGG | + | chr3.1:86964255-86964274 | None:intergenic | 25.0% |
! | TTGAAAGAAAAATAGGGAAA+GGG | - | chr3.1:86964981-86965000 | MS.gene014715:CDS | 25.0% |
! | TTGAATGAAGAAAGAATTGA+AGG | + | chr3.1:86962584-86962603 | None:intergenic | 25.0% |
!! | AATCTACTTCATTTTCTTCA+AGG | - | chr3.1:86962551-86962570 | MS.gene014715:CDS | 25.0% |
!! | ATTTTTCCTTTGACCTTTTT+GGG | - | chr3.1:86964173-86964192 | MS.gene014715:intron | 25.0% |
!! | CAATTTTCAGAATCCATTTT+GGG | + | chr3.1:86963780-86963799 | None:intergenic | 25.0% |
!! | TACTTTTCATGCTTATGTTT+AGG | - | chr3.1:86963118-86963137 | MS.gene014715:intron | 25.0% |
!! | TCAATTTTCAGAATCCATTT+TGG | + | chr3.1:86963781-86963800 | None:intergenic | 25.0% |
!! | TTAATTTTGCCATGATAAGA+CGG | - | chr3.1:86965067-86965086 | MS.gene014715:CDS | 25.0% |
!! | TTGTATAAACTTTGTTGTGA+TGG | - | chr3.1:86965248-86965267 | MS.gene014715:intron | 25.0% |
!!! | CTACAGTTGTATTTATTTTG+CGG | - | chr3.1:86964014-86964033 | MS.gene014715:CDS | 25.0% |
!!! | GAGTTATTCTTTTTCATTTC+TGG | - | chr3.1:86965430-86965449 | MS.gene014715:intron | 25.0% |
!!! | TACAGTTGTATTTATTTTGC+GGG | - | chr3.1:86964015-86964034 | MS.gene014715:CDS | 25.0% |
!!! | TTTTGAGTGAAAAAAATAGG+TGG | + | chr3.1:86964871-86964890 | None:intergenic | 25.0% |
AAAGAAACTGCTAAAAGTCT+TGG | - | chr3.1:86964666-86964685 | MS.gene014715:intron | 30.0% | |
AAATGAAGTAGATTCTGCAT+CGG | + | chr3.1:86962545-86962564 | None:intergenic | 30.0% | |
AAATGCCAACATTCAAAACA+TGG | + | chr3.1:86964539-86964558 | None:intergenic | 30.0% | |
AAATGCTTATATTTACGAGC+AGG | - | chr3.1:86963001-86963020 | MS.gene014715:intron | 30.0% | |
AATGCTTATATTTACGAGCA+GGG | - | chr3.1:86963002-86963021 | MS.gene014715:intron | 30.0% | |
ACAAATAGGTGTTCAATTAC+TGG | + | chr3.1:86965100-86965119 | None:intergenic | 30.0% | |
AGAAGAATAAGAAGAACCAT+TGG | - | chr3.1:86963676-86963695 | MS.gene014715:intron | 30.0% | |
ATAAGAAGAACCATTGGTAA+CGG | - | chr3.1:86963682-86963701 | MS.gene014715:intron | 30.0% | |
ATACACTTTGGTCGAAAAAT+GGG | - | chr3.1:86963276-86963295 | MS.gene014715:intron | 30.0% | |
ATGTTGATGCAGTTTAATTG+CGG | - | chr3.1:86962644-86962663 | MS.gene014715:CDS | 30.0% | |
ATGTTTCTTATTATAGCCAC+AGG | - | chr3.1:86964429-86964448 | MS.gene014715:intron | 30.0% | |
CAATGTATATTGCCATAAAG+AGG | - | chr3.1:86963415-86963434 | MS.gene014715:intron | 30.0% | |
CTCTTTATGGCAATATACAT+TGG | + | chr3.1:86963417-86963436 | None:intergenic | 30.0% | |
CTTGGTTAATGTTATGAAGA+GGG | - | chr3.1:86963707-86963726 | MS.gene014715:intron | 30.0% | |
GAAAAAAAGTAAGACAGTGA+AGG | - | chr3.1:86965847-86965866 | MS.gene014715:intron | 30.0% | |
GAGTTTACACTCAATAGAAA+TGG | - | chr3.1:86964072-86964091 | MS.gene014715:CDS | 30.0% | |
GCACAAAACATTTAGTATAG+GGG | + | chr3.1:86964729-86964748 | None:intergenic | 30.0% | |
GTTGAAAGAAAAATAGGGAA+AGG | - | chr3.1:86964980-86964999 | MS.gene014715:CDS | 30.0% | |
GTTGTCCATAATCCTTTAAA+TGG | - | chr3.1:86964247-86964266 | MS.gene014715:CDS | 30.0% | |
TATACACTTTGGTCGAAAAA+TGG | - | chr3.1:86963275-86963294 | MS.gene014715:intron | 30.0% | |
TCGAAACATTATTCCCAAAA+TGG | - | chr3.1:86963764-86963783 | MS.gene014715:intron | 30.0% | |
TCTAGTGACAGAAAATTCTA+TGG | + | chr3.1:86965604-86965623 | None:intergenic | 30.0% | |
TGTTTCTTATTATAGCCACA+GGG | - | chr3.1:86964430-86964449 | MS.gene014715:intron | 30.0% | |
TTCTGGTAGAATAGACATTA+TGG | - | chr3.1:86963977-86963996 | MS.gene014715:CDS | 30.0% | |
! | AATTTAAGTTTGTGGGAACT+CGG | - | chr3.1:86964933-86964952 | MS.gene014715:CDS | 30.0% |
! | CGTTCATAAACTAGCTTAAA+AGG | + | chr3.1:86963569-86963588 | None:intergenic | 30.0% |
! | CTGATTATATTTAAGGTAGG+AGG | + | chr3.1:86963053-86963072 | None:intergenic | 30.0% |
! | GATTTTTCCTTTGACCTTTT+TGG | - | chr3.1:86964172-86964191 | MS.gene014715:intron | 30.0% |
! | GCTCGTAAATATAAGCATTT+TGG | + | chr3.1:86963001-86963020 | None:intergenic | 30.0% |
! | GGATTCTGAAAATTGAAGAA+GGG | - | chr3.1:86963785-86963804 | MS.gene014715:intron | 30.0% |
! | TAATTTTGCCATGATAAGAC+GGG | - | chr3.1:86965068-86965087 | MS.gene014715:CDS | 30.0% |
! | TCATAAACTAGCTTAAAAGG+TGG | + | chr3.1:86963566-86963585 | None:intergenic | 30.0% |
! | TGGAGAGAATTTAAGTTTGT+GGG | - | chr3.1:86964926-86964945 | MS.gene014715:intron | 30.0% |
! | TGGATTCTGAAAATTGAAGA+AGG | - | chr3.1:86963784-86963803 | MS.gene014715:intron | 30.0% |
! | TTATTGTTTCTTCAGACCTT+TGG | - | chr3.1:86965722-86965741 | MS.gene014715:CDS | 30.0% |
! | TTGGAGAGAATTTAAGTTTG+TGG | - | chr3.1:86964925-86964944 | MS.gene014715:intron | 30.0% |
! | TTTCATTTCTGTTTTCTTCC+AGG | - | chr3.1:86964207-86964226 | MS.gene014715:CDS | 30.0% |
!!! | ACAGTTGTATTTATTTTGCG+GGG | - | chr3.1:86964016-86964035 | MS.gene014715:CDS | 30.0% |
!!! | ATTTTTTGTCAGCTTAAGAG+AGG | + | chr3.1:86963912-86963931 | None:intergenic | 30.0% |
!!! | TTTTTTGTCAGCTTAAGAGA+GGG | + | chr3.1:86963911-86963930 | None:intergenic | 30.0% |
AAAATAACACCTACCTGTTG+AGG | - | chr3.1:86964887-86964906 | MS.gene014715:intron | 35.0% | |
AACAATAGTGCACAAGAACA+TGG | + | chr3.1:86965501-86965520 | None:intergenic | 35.0% | |
CAAAATATCAGCATATCACC+TGG | + | chr3.1:86964228-86964247 | None:intergenic | 35.0% | |
CTGTTCACTGCTGTAATATA+AGG | + | chr3.1:86963817-86963836 | None:intergenic | 35.0% | |
CTTCTACCTACTAAGACTAT+TGG | - | chr3.1:86963869-86963888 | MS.gene014715:intron | 35.0% | |
GAAAAAGAATAACTCTGCGA+AGG | + | chr3.1:86965425-86965444 | None:intergenic | 35.0% | |
GAAAATTCTATGGCAAACAC+AGG | + | chr3.1:86965594-86965613 | None:intergenic | 35.0% | |
GCTTGGTTAATGTTATGAAG+AGG | - | chr3.1:86963706-86963725 | MS.gene014715:intron | 35.0% | |
GCTTTAACTACAACGATTGT+GGG | - | chr3.1:86965527-86965546 | MS.gene014715:intron | 35.0% | |
GTCAAAGGAAAAATCTCCAA+GGG | + | chr3.1:86964167-86964186 | None:intergenic | 35.0% | |
GTCATATGGAATTGCTTCAA+TGG | - | chr3.1:86962671-86962690 | MS.gene014715:CDS | 35.0% | |
GTTTCTTATTATAGCCACAG+GGG | - | chr3.1:86964431-86964450 | MS.gene014715:intron | 35.0% | |
TCTGAAAATTGAAGAAGGGA+AGG | - | chr3.1:86963789-86963808 | MS.gene014715:intron | 35.0% | |
TGCTTTAACTACAACGATTG+TGG | - | chr3.1:86965526-86965545 | MS.gene014715:intron | 35.0% | |
TGGTCAACAAAGATCAAAGA+GGG | - | chr3.1:86963618-86963637 | MS.gene014715:intron | 35.0% | |
TTTCATGCTTATGTTTAGGC+TGG | - | chr3.1:86963122-86963141 | MS.gene014715:intron | 35.0% | |
! | ACCTTTGGTTTCTTCTTACT+GGG | - | chr3.1:86965737-86965756 | MS.gene014715:CDS | 35.0% |
! | ATGCTACCAATAGTCTTAGT+AGG | + | chr3.1:86963878-86963897 | None:intergenic | 35.0% |
! | ATTTAAGTTTGTGGGAACTC+GGG | - | chr3.1:86964934-86964953 | MS.gene014715:CDS | 35.0% |
! | CAATAGTCTTAGTAGGTAGA+AGG | + | chr3.1:86963871-86963890 | None:intergenic | 35.0% |
! | TAAGAAGAACCATTGGTAAC+GGG | - | chr3.1:86963683-86963702 | MS.gene014715:intron | 35.0% |
! | TAGTATCTGATAACGTGACA+TGG | - | chr3.1:86965330-86965349 | MS.gene014715:intron | 35.0% |
!! | CTTATTCTTTCGTTGGTGAT+GGG | - | chr3.1:86965458-86965477 | MS.gene014715:intron | 35.0% |
!! | GATATTGACTCCTTTCAAAC+TGG | + | chr3.1:86963394-86963413 | None:intergenic | 35.0% |
!!! | CAGTTGTATTTATTTTGCGG+GGG | - | chr3.1:86964017-86964036 | MS.gene014715:CDS | 35.0% |
AAGCCATGCTATACCCAAAA+AGG | + | chr3.1:86964189-86964208 | None:intergenic | 40.0% | |
ACCAAAGTGTATAAGCAAGG+TGG | + | chr3.1:86963268-86963287 | None:intergenic | 40.0% | |
ACCACCTTGCTTATACACTT+TGG | - | chr3.1:86963264-86963283 | MS.gene014715:intron | 40.0% | |
ACCCAGTAAGAAGAAACCAA+AGG | + | chr3.1:86965741-86965760 | None:intergenic | 40.0% | |
ACGATTGTGGGTGTTCTTAA+AGG | - | chr3.1:86965539-86965558 | MS.gene014715:intron | 40.0% | |
ACTTATCGCTGGATGTTTCA+TGG | - | chr3.1:86963455-86963474 | MS.gene014715:intron | 40.0% | |
AGTGAAGGTAGTTACAGATG+TGG | - | chr3.1:86965862-86965881 | MS.gene014715:CDS | 40.0% | |
ATCCAGTCACATTCAAAGCA+TGG | + | chr3.1:86965775-86965794 | None:intergenic | 40.0% | |
ATGCTTATGTTTAGGCTGGA+GGG | - | chr3.1:86963126-86963145 | MS.gene014715:intron | 40.0% | |
CCATCACCAACGAAAGAATA+AGG | + | chr3.1:86965460-86965479 | None:intergenic | 40.0% | |
CTTATCGCTGGATGTTTCAT+GGG | - | chr3.1:86963456-86963475 | MS.gene014715:intron | 40.0% | |
GAAACCATTACCTGAGTTGT+AGG | + | chr3.1:86963492-86963511 | None:intergenic | 40.0% | |
GCTATACCCAAAAAGGTCAA+AGG | + | chr3.1:86964182-86964201 | None:intergenic | 40.0% | |
GGTCAAAGGAAAAATCTCCA+AGG | + | chr3.1:86964168-86964187 | None:intergenic | 40.0% | |
GGTGATCCTTATTCTTTCGT+TGG | - | chr3.1:86965451-86965470 | MS.gene014715:intron | 40.0% | |
GTGGTCAACAAAGATCAAAG+AGG | - | chr3.1:86963617-86963636 | MS.gene014715:intron | 40.0% | |
GTTCCTTTCTGTCGTATATC+AGG | - | chr3.1:86964096-86964115 | MS.gene014715:intron | 40.0% | |
TCACCTGATATACGACAGAA+AGG | + | chr3.1:86964102-86964121 | None:intergenic | 40.0% | |
TCGACCAAAGTGTATAAGCA+AGG | + | chr3.1:86963271-86963290 | None:intergenic | 40.0% | |
TGAAATTACCTGAGTGTGGT+GGG | - | chr3.1:86965006-86965025 | MS.gene014715:CDS | 40.0% | |
TGGAATTGCTTCAATGGCAA+TGG | - | chr3.1:86962677-86962696 | MS.gene014715:intron | 40.0% | |
TTAATTGCGGCAGTGTCATA+TGG | - | chr3.1:86962657-86962676 | MS.gene014715:CDS | 40.0% | |
TTATCGCTGGATGTTTCATG+GGG | - | chr3.1:86963457-86963476 | MS.gene014715:intron | 40.0% | |
TTTGCTTTGGCCAGTTTGAA+AGG | - | chr3.1:86963381-86963400 | MS.gene014715:intron | 40.0% | |
! | ACCATAGCTTGCAACATATC+TGG | - | chr3.1:86965283-86965302 | MS.gene014715:intron | 40.0% |
! | CCATAGCTTGCAACATATCT+GGG | - | chr3.1:86965284-86965303 | MS.gene014715:intron | 40.0% |
! | CCTTATTCTTTCGTTGGTGA+TGG | - | chr3.1:86965457-86965476 | MS.gene014715:intron | 40.0% |
! | GACCTTTGGTTTCTTCTTAC+TGG | - | chr3.1:86965736-86965755 | MS.gene014715:CDS | 40.0% |
! | TCTTAAAGGAGTTGGTTCCA+CGG | - | chr3.1:86965553-86965572 | MS.gene014715:intron | 40.0% |
! | TGAGAATGGACTTTCATCAG+TGG | - | chr3.1:86964365-86964384 | MS.gene014715:intron | 40.0% |
! | TGCTTTGAATGTGACTGGAT+TGG | - | chr3.1:86965775-86965794 | MS.gene014715:intron | 40.0% |
! | TTTGGTTTCTTCTTACTGGG+TGG | - | chr3.1:86965740-86965759 | MS.gene014715:CDS | 40.0% |
!! | AAGAAGAACCATTGGTAACG+GGG | - | chr3.1:86963684-86963703 | MS.gene014715:intron | 40.0% |
!! | AAGTAGATTCTGCATCGGTT+CGG | + | chr3.1:86962540-86962559 | None:intergenic | 40.0% |
!! | TATGAAGAGGGTGTTTAAGC+TGG | - | chr3.1:86963719-86963738 | MS.gene014715:intron | 40.0% |
!!! | TGACCTTTTTGGGTATAGCA+TGG | - | chr3.1:86964183-86964202 | MS.gene014715:intron | 40.0% |
AAACCTCTCAAACCAGACTG+AGG | + | chr3.1:86964836-86964855 | None:intergenic | 45.0% | |
AAGAGCAAGAGGGGTAGATT+TGG | - | chr3.1:86963305-86963324 | MS.gene014715:intron | 45.0% | |
AAGAGGGGTAGATTTGGCAA+CGG | - | chr3.1:86963311-86963330 | MS.gene014715:intron | 45.0% | |
AAGCGGTGTAAGCCTCTTTA+TGG | + | chr3.1:86963430-86963449 | None:intergenic | 45.0% | |
AATGACTCTCCTCACTTTGC+AGG | - | chr3.1:86962740-86962759 | MS.gene014715:intron | 45.0% | |
ACAAGGTACATGGTCTGCAT+AGG | + | chr3.1:86964324-86964343 | None:intergenic | 45.0% | |
AGAATATGGGAATTCCCCTG+TGG | + | chr3.1:86964448-86964467 | None:intergenic | 45.0% | |
AGGATGCATGCTAAGTGTCT+TGG | + | chr3.1:86962854-86962873 | None:intergenic | 45.0% | |
ATAACACCTACCTGTTGAGG+AGG | - | chr3.1:86964890-86964909 | MS.gene014715:intron | 45.0% | |
ATGGGATACACAAGAGCAAG+AGG | - | chr3.1:86963294-86963313 | MS.gene014715:intron | 45.0% | |
CATGCTTATGTTTAGGCTGG+AGG | - | chr3.1:86963125-86963144 | MS.gene014715:intron | 45.0% | |
CCCAGATATGTTGCAAGCTA+TGG | + | chr3.1:86965287-86965306 | None:intergenic | 45.0% | |
GAAATTACCTGAGTGTGGTG+GGG | - | chr3.1:86965007-86965026 | MS.gene014715:CDS | 45.0% | |
GAAGGTAGTTACAGATGTGG+AGG | - | chr3.1:86965865-86965884 | MS.gene014715:CDS | 45.0% | |
GAGACCTACAACTCAGGTAA+TGG | - | chr3.1:86963485-86963504 | MS.gene014715:intron | 45.0% | |
GAGTTGTCAGGCAACTCAAA+GGG | - | chr3.1:86964777-86964796 | MS.gene014715:intron | 45.0% | |
GCAAACAAACCTGCAAAGTG+AGG | + | chr3.1:86962752-86962771 | None:intergenic | 45.0% | |
GGAAAAGACCCGTCTTATCA+TGG | + | chr3.1:86965079-86965098 | None:intergenic | 45.0% | |
GGTGTGAAATTACCTGAGTG+TGG | - | chr3.1:86965002-86965021 | MS.gene014715:CDS | 45.0% | |
GTGAAATTACCTGAGTGTGG+TGG | - | chr3.1:86965005-86965024 | MS.gene014715:CDS | 45.0% | |
GTGGGTGTTCTTAAAGGAGT+TGG | - | chr3.1:86965545-86965564 | MS.gene014715:intron | 45.0% | |
TAACACCTACCTGTTGAGGA+GGG | - | chr3.1:86964891-86964910 | MS.gene014715:intron | 45.0% | |
TGCCAATGTCGCATTTGCTT+TGG | - | chr3.1:86963368-86963387 | MS.gene014715:intron | 45.0% | |
TGGGATACACAAGAGCAAGA+GGG | - | chr3.1:86963295-86963314 | MS.gene014715:intron | 45.0% | |
TTGGTCATCAATACAGCTGG+TGG | - | chr3.1:86965794-86965813 | MS.gene014715:intron | 45.0% | |
! | CAGATTTTTCCACCAGCACA+AGG | + | chr3.1:86964341-86964360 | None:intergenic | 45.0% |
! | CTTGTGCTGGTGGAAAAATC+TGG | - | chr3.1:86964339-86964358 | MS.gene014715:intron | 45.0% |
! | GAAAAATCTGGCGCTGAGAA+TGG | - | chr3.1:86964351-86964370 | MS.gene014715:intron | 45.0% |
! | GTCCATGCTTTGAATGTGAC+TGG | - | chr3.1:86965770-86965789 | MS.gene014715:intron | 45.0% |
! | TCAGTGATATTGACTGCTGC+TGG | - | chr3.1:86964127-86964146 | MS.gene014715:intron | 45.0% |
!! | CGCTGCCATGTTTTGAATGT+TGG | - | chr3.1:86964531-86964550 | MS.gene014715:intron | 45.0% |
!! | CTTTGAGTTGCCTGACAACT+CGG | + | chr3.1:86964778-86964797 | None:intergenic | 45.0% |
!! | GGATTGGTCATCAATACAGC+TGG | - | chr3.1:86965791-86965810 | MS.gene014715:intron | 45.0% |
AACACCTACCTGTTGAGGAG+GGG | - | chr3.1:86964892-86964911 | MS.gene014715:intron | 50.0% | |
AGTTTGTGGGAACTCGGGAT+TGG | - | chr3.1:86964939-86964958 | MS.gene014715:CDS | 50.0% | |
CATGGTCTGCATAGGAGAGT+AGG | + | chr3.1:86964316-86964335 | None:intergenic | 50.0% | |
CCAGCGATAAGTACAGCAAG+CGG | + | chr3.1:86963447-86963466 | None:intergenic | 50.0% | |
CGAGTTGTCAGGCAACTCAA+AGG | - | chr3.1:86964776-86964795 | MS.gene014715:intron | 50.0% | |
CTCTCAAACCAGACTGAGGA+GGG | + | chr3.1:86964832-86964851 | None:intergenic | 50.0% | |
CTGGATGTTTCATGGGGAAG+GGG | - | chr3.1:86963463-86963482 | MS.gene014715:intron | 50.0% | |
GCTGGATGTTTCATGGGGAA+GGG | - | chr3.1:86963462-86963481 | MS.gene014715:intron | 50.0% | |
GCTTGTCTTTCCGAGTTGTC+AGG | - | chr3.1:86964765-86964784 | MS.gene014715:intron | 50.0% | |
GGCCAAAGCAAATGCGACAT+TGG | + | chr3.1:86963373-86963392 | None:intergenic | 50.0% | |
GGGATACACAAGAGCAAGAG+GGG | - | chr3.1:86963296-86963315 | MS.gene014715:intron | 50.0% | |
GTTTGTGGGAACTCGGGATT+GGG | - | chr3.1:86964940-86964959 | MS.gene014715:CDS | 50.0% | |
TAACCAAGCCCCGTTACCAA+TGG | + | chr3.1:86963695-86963714 | None:intergenic | 50.0% | |
TCTCAAACCAGACTGAGGAG+GGG | + | chr3.1:86964831-86964850 | None:intergenic | 50.0% | |
TTCCACCAGCACAAGGTACA+TGG | + | chr3.1:86964334-86964353 | None:intergenic | 50.0% | |
! | AGTTGGTTCCACGGTAAGCT+AGG | - | chr3.1:86965562-86965581 | MS.gene014715:intron | 50.0% |
! | TCAATACAGCTGGTGGTGTG+TGG | - | chr3.1:86965801-86965820 | MS.gene014715:intron | 50.0% |
ACACCTACCTGTTGAGGAGG+GGG | - | chr3.1:86964893-86964912 | MS.gene014715:intron | 55.0% | |
CCTCTCAAACCAGACTGAGG+AGG | + | chr3.1:86964833-86964852 | None:intergenic | 55.0% | |
CGCTGGATGTTTCATGGGGA+AGG | - | chr3.1:86963461-86963480 | MS.gene014715:intron | 55.0% | |
GAAGGGGAGACCTACAACTC+AGG | - | chr3.1:86963479-86963498 | MS.gene014715:intron | 55.0% | |
GACCATGTACCTTGTGCTGG+TGG | - | chr3.1:86964329-86964348 | MS.gene014715:intron | 55.0% | |
GCAGACCATGTACCTTGTGC+TGG | - | chr3.1:86964326-86964345 | MS.gene014715:intron | 55.0% | |
GGAGTTCTCATAGCAGCCCT+TGG | - | chr3.1:86964148-86964167 | MS.gene014715:intron | 55.0% | |
GGATCACTCCTAGCTTACCG+TGG | + | chr3.1:86965573-86965592 | None:intergenic | 55.0% | |
TGAAACCGGGAGCAGTTGCT+TGG | + | chr3.1:86963337-86963356 | None:intergenic | 55.0% | |
! | ATTACCTGAGTGTGGTGGGG+TGG | - | chr3.1:86965010-86965029 | MS.gene014715:CDS | 55.0% |
! | CCTCCTCAGTCTGGTTTGAG+AGG | - | chr3.1:86964830-86964849 | MS.gene014715:intron | 55.0% |
!! | CCGCTTGCTGTACTTATCGC+TGG | - | chr3.1:86963444-86963463 | MS.gene014715:intron | 55.0% |
!! | GAACCATTGGTAACGGGGCT+TGG | - | chr3.1:86963689-86963708 | MS.gene014715:intron | 55.0% |
AACGGCCAAGCAACTGCTCC+CGG | - | chr3.1:86963329-86963348 | MS.gene014715:intron | 60.0% | |
ACCTACCTGTTGAGGAGGGG+GGG | - | chr3.1:86964895-86964914 | MS.gene014715:intron | 60.0% | |
CACCTACCTGTTGAGGAGGG+GGG | - | chr3.1:86964894-86964913 | MS.gene014715:intron | 60.0% | |
CAGACTGAGGAGGGGAAGAC+TGG | + | chr3.1:86964823-86964842 | None:intergenic | 60.0% | |
CAGTCTTCCCCTCCTCAGTC+TGG | - | chr3.1:86964821-86964840 | MS.gene014715:intron | 60.0% | |
CTTTCCACCCCACCACACTC+AGG | + | chr3.1:86965017-86965036 | None:intergenic | 60.0% | |
ACCCCCCCTCCTCAACAGGT+AGG | + | chr3.1:86964899-86964918 | None:intergenic | 65.0% | |
CTCAACCCCCCCTCCTCAAC+AGG | + | chr3.1:86964903-86964922 | None:intergenic | 65.0% | |
CTGTTGAGGAGGGGGGGTTG+AGG | - | chr3.1:86964901-86964920 | MS.gene014715:intron | 65.0% | |
GAGGAGGGGGGGTTGAGGTT+TGG | - | chr3.1:86964906-86964925 | MS.gene014715:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 86962529 | 86965901 | 86962529 | ID=MS.gene014715 |
chr3.1 | mRNA | 86962529 | 86965901 | 86962529 | ID=MS.gene014715.t1;Parent=MS.gene014715 |
chr3.1 | exon | 86965858 | 86965901 | 86965858 | ID=MS.gene014715.t1.exon1;Parent=MS.gene014715.t1 |
chr3.1 | CDS | 86965858 | 86965901 | 86965858 | ID=cds.MS.gene014715.t1;Parent=MS.gene014715.t1 |
chr3.1 | exon | 86965669 | 86965774 | 86965669 | ID=MS.gene014715.t1.exon2;Parent=MS.gene014715.t1 |
chr3.1 | CDS | 86965669 | 86965774 | 86965669 | ID=cds.MS.gene014715.t1;Parent=MS.gene014715.t1 |
chr3.1 | exon | 86964930 | 86965175 | 86964930 | ID=MS.gene014715.t1.exon3;Parent=MS.gene014715.t1 |
chr3.1 | CDS | 86964930 | 86965175 | 86964930 | ID=cds.MS.gene014715.t1;Parent=MS.gene014715.t1 |
chr3.1 | exon | 86964202 | 86964312 | 86964202 | ID=MS.gene014715.t1.exon4;Parent=MS.gene014715.t1 |
chr3.1 | CDS | 86964202 | 86964312 | 86964202 | ID=cds.MS.gene014715.t1;Parent=MS.gene014715.t1 |
chr3.1 | exon | 86963942 | 86964100 | 86963942 | ID=MS.gene014715.t1.exon5;Parent=MS.gene014715.t1 |
chr3.1 | CDS | 86963942 | 86964100 | 86963942 | ID=cds.MS.gene014715.t1;Parent=MS.gene014715.t1 |
chr3.1 | exon | 86962856 | 86962999 | 86962856 | ID=MS.gene014715.t1.exon6;Parent=MS.gene014715.t1 |
chr3.1 | CDS | 86962856 | 86962999 | 86962856 | ID=cds.MS.gene014715.t1;Parent=MS.gene014715.t1 |
chr3.1 | exon | 86962529 | 86962693 | 86962529 | ID=MS.gene014715.t1.exon7;Parent=MS.gene014715.t1 |
chr3.1 | CDS | 86962529 | 86962693 | 86962529 | ID=cds.MS.gene014715.t1;Parent=MS.gene014715.t1 |
Gene Sequence |
Protein sequence |