AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene69267


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69267.t1 MTR_3g070000 99.071 323 3 0 1 323 1 323 0.0 642
MS.gene69267.t1 MTR_5g081710 90.759 303 28 0 20 322 4 306 0.0 563
MS.gene69267.t1 MTR_3g462070 80.130 307 61 0 16 322 1 307 0.0 521
MS.gene69267.t1 MTR_4g018760 74.662 296 75 0 25 320 13 308 7.38e-164 459
MS.gene69267.t1 MTR_8g090130 73.220 295 79 0 28 322 15 309 5.08e-158 444
MS.gene69267.t1 MTR_4g101860 68.243 296 94 0 28 323 56 351 2.96e-138 395
MS.gene69267.t1 MTR_3g072380 33.219 292 191 3 29 319 19 307 3.03e-50 170
MS.gene69267.t1 MTR_1g030320 33.448 290 187 4 32 319 21 306 9.82e-50 169
MS.gene69267.t1 MTR_0011s0320 32.653 294 188 4 29 318 18 305 2.76e-36 134
MS.gene69267.t1 MTR_4g114360 32.441 299 182 6 29 318 18 305 2.49e-32 123
MS.gene69267.t1 MTR_3g072380 31.148 183 124 1 29 211 19 199 4.36e-31 117
MS.gene69267.t1 MTR_3g107470 29.730 296 194 5 29 318 22 309 5.20e-30 117
MS.gene69267.t1 MTR_7g110380 31.034 290 184 5 38 320 28 308 4.88e-28 112
MS.gene69267.t1 MTR_0662s0010 33.206 262 155 6 29 281 18 268 3.46e-26 105
MS.gene69267.t1 MTR_4g123900 29.268 287 193 4 38 320 24 304 5.49e-22 95.5
MS.gene69267.t1 MTR_2g070400 24.483 290 211 5 38 323 24 309 1.00e-20 91.3
MS.gene69267.t1 MTR_4g105630 28.136 295 196 8 32 319 92 377 5.09e-20 90.1
MS.gene69267.t1 MTR_4g123900 29.242 277 184 5 38 309 24 293 2.95e-18 84.0
MS.gene69267.t1 MTR_3g049400 22.785 316 231 8 9 319 94 401 1.88e-16 79.7
MS.gene69267.t1 MTR_6g005480 27.812 320 221 6 6 319 93 408 1.30e-15 77.4
MS.gene69267.t1 MTR_8g016090 24.150 294 205 8 25 306 169 456 4.10e-15 76.3
MS.gene69267.t1 MTR_4g088350 27.273 308 193 11 32 322 106 399 9.48e-15 74.7
MS.gene69267.t1 MTR_4g105630 26.882 279 188 8 32 303 92 361 1.65e-14 73.9
MS.gene69267.t1 MTR_2g094640 25.080 311 206 7 24 320 7 304 2.85e-14 73.2
MS.gene69267.t1 MTR_3g077640 26.027 292 206 5 32 319 117 402 3.84e-14 73.2
MS.gene69267.t1 MTR_2g022700 22.667 300 220 7 26 320 104 396 4.00e-14 72.8
MS.gene69267.t1 MTR_5g044220 25.649 308 193 11 32 320 111 401 9.83e-14 71.6
MS.gene69267.t1 MTR_4g058860 26.349 315 204 8 19 320 5 304 5.14e-13 69.3
MS.gene69267.t1 MTR_2g038410 26.978 278 167 11 37 299 67 323 5.75e-13 69.3
MS.gene69267.t1 MTR_2g029180 25.000 320 227 10 3 316 80 392 6.79e-12 66.2
MS.gene69267.t1 MTR_4g105630 28.788 198 131 5 32 226 92 282 1.72e-11 64.7
MS.gene69267.t1 MTR_4g105630 28.713 202 134 5 28 226 88 282 2.41e-11 64.3
MS.gene69267.t1 MTR_3g095130 23.103 290 215 3 35 323 24 306 8.03e-11 62.8
MS.gene69267.t1 MTR_4g088350 25.784 287 184 9 54 323 15 289 9.40e-11 62.0
MS.gene69267.t1 MTR_5g004620 25.166 302 212 5 29 322 15 310 9.78e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69267.t1 AT3G11320 91.148 305 27 0 18 322 4 308 0.0 568
MS.gene69267.t1 AT5G05820 88.997 309 33 1 16 323 1 309 0.0 558
MS.gene69267.t1 AT3G10290 67.081 322 103 1 2 320 32 353 4.25e-157 444
MS.gene69267.t1 AT5G04160 71.186 295 85 0 28 322 15 309 4.91e-157 441
MS.gene69267.t1 AT1G12500 65.347 303 105 0 20 322 54 356 1.85e-139 399
MS.gene69267.t1 AT1G21870 35.216 301 189 5 21 319 11 307 5.50e-53 177
MS.gene69267.t1 AT1G77610 33.904 292 189 3 29 319 13 301 8.98e-51 171
MS.gene69267.t1 AT5G25400 31.419 296 189 5 29 318 22 309 1.11e-32 124
MS.gene69267.t1 AT5G11230 31.757 296 188 5 29 318 22 309 7.42e-32 122
MS.gene69267.t1 AT4G32390 31.081 296 190 5 29 318 22 309 9.83e-30 116
MS.gene69267.t1 AT2G25520 31.081 296 190 5 29 318 22 309 9.11e-29 114
MS.gene69267.t1 AT3G17430 29.965 287 191 4 38 320 25 305 1.95e-25 105
MS.gene69267.t1 AT3G17430 29.965 287 191 4 38 320 25 305 1.95e-25 105
MS.gene69267.t1 AT1G53660 25.606 289 202 5 38 321 30 310 2.98e-22 95.5
MS.gene69267.t1 AT1G53660 25.606 289 202 5 38 321 48 328 6.92e-22 95.1
MS.gene69267.t1 AT1G48230 30.241 291 185 6 38 320 25 305 1.56e-21 94.4
MS.gene69267.t1 AT3G14410 25.402 311 214 5 22 323 12 313 8.41e-21 91.7
MS.gene69267.t1 AT1G53660 25.182 274 194 4 51 321 11 276 1.17e-20 90.5
MS.gene69267.t1 AT5G54800 23.492 315 229 7 9 318 80 387 8.49e-18 83.6
MS.gene69267.t1 AT3G01550 26.769 325 227 6 1 319 54 373 1.44e-17 83.2
MS.gene69267.t1 AT1G53660 26.339 224 155 3 100 321 1 216 3.03e-17 80.1
MS.gene69267.t1 AT5G17630 25.839 298 205 10 32 322 119 407 1.66e-16 80.1
MS.gene69267.t1 AT1G61800 21.835 316 227 8 9 319 88 388 1.05e-15 77.4
MS.gene69267.t1 AT1G61800 21.698 318 229 8 9 321 88 390 1.22e-15 77.4
MS.gene69267.t1 AT1G48230 30.435 230 144 5 97 320 13 232 6.37e-15 74.3
MS.gene69267.t1 AT3G01550 26.154 325 224 7 1 319 54 368 2.41e-14 73.6
MS.gene69267.t1 AT5G57100 25.850 294 195 10 37 322 76 354 5.31e-14 72.4
MS.gene69267.t1 AT5G46110 27.723 303 193 11 32 320 115 405 5.77e-14 72.4
MS.gene69267.t1 AT5G46110 27.723 303 193 11 32 320 115 405 6.25e-14 72.4
MS.gene69267.t1 AT5G46110 27.425 299 197 10 32 322 2 288 6.64e-14 71.6
MS.gene69267.t1 AT5G33320 26.299 308 212 6 18 318 100 399 9.10e-14 72.0
MS.gene69267.t1 AT1G06470 23.867 331 226 9 11 323 61 383 7.24e-13 69.3
MS.gene69267.t1 AT1G06470 23.867 331 226 9 11 323 61 383 7.24e-13 69.3
MS.gene69267.t1 AT1G06470 23.867 331 226 9 11 323 61 383 7.24e-13 69.3
MS.gene69267.t1 AT1G06470 23.867 331 226 9 11 323 61 383 7.24e-13 69.3
MS.gene69267.t1 AT2G28315 23.232 297 210 6 26 315 9 294 6.50e-12 65.9
MS.gene69267.t1 AT1G53660 25.281 178 130 2 38 212 48 225 1.12e-11 64.3
MS.gene69267.t1 AT2G28315 23.232 297 210 6 26 315 9 294 1.45e-11 64.7
MS.gene69267.t1 AT5G57100 28.947 190 118 8 37 219 76 255 1.51e-11 64.7
MS.gene69267.t1 AT5G55950 27.397 292 172 12 37 309 69 339 4.43e-11 63.9
MS.gene69267.t1 AT5G55950 27.778 270 160 9 37 292 9 257 5.09e-11 63.2
MS.gene69267.t1 AT4G09810 23.490 298 217 4 30 323 16 306 5.41e-11 63.2

Find 64 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACCAAGTTTCCATTTATT+TGG 0.112862 3.2:+63764636 MS.gene69267:CDS
ACCCTTGTTCCTGTTGTTAC+TGG 0.191940 3.2:+63763535 MS.gene69267:CDS
CACAATCATGAAATTGTTAC+AGG 0.239454 3.2:+63763081 None:intergenic
AAACTGGGTTTCTAAATATT+AGG 0.258669 3.2:-63766228 None:intergenic
ATACAATGAATCCAAATAAA+TGG 0.258981 3.2:-63764647 None:intergenic
TCTTCCCGCCACACTTATAA+TGG 0.261442 3.2:+63764883 MS.gene69267:CDS
TTCTGTGTTTCTGTTGTGTT+TGG 0.269088 3.2:+63763388 MS.gene69267:CDS
AGAAACCCAGTTTCAGTTAC+TGG 0.276086 3.2:+63766238 MS.gene69267:CDS
ATCATTCCAGTAACTGAAAC+TGG 0.278208 3.2:-63766244 None:intergenic
GAGACGATCCCAAGATAATT+TGG 0.307870 3.2:+63764942 MS.gene69267:CDS
ATTGGTCAGGTTGACAAAAT+AGG 0.310667 3.2:-63764990 None:intergenic
AAGTATTTGTTGAGCAACTA+TGG 0.329770 3.2:+63763217 MS.gene69267:CDS
GTTACTGGAATGATGGGTTA+TGG 0.364766 3.2:+63766253 MS.gene69267:CDS
TCTTCCTGTATCGTTTAATC+AGG 0.373216 3.2:+63763429 MS.gene69267:CDS
TAGCAGATACCAAATTATCT+TGG 0.373919 3.2:-63764951 None:intergenic
TCAACACGTTTCTTCACAAT+AGG 0.398972 3.2:+63763145 MS.gene69267:CDS
CAGGTTTCTGAAGATCAAAA+AGG 0.421249 3.2:+63763100 MS.gene69267:CDS
TACCAGTGCTCTGACCCTTC+AGG 0.423819 3.2:+63765030 MS.gene69267:CDS
TCTGTGTTTCTGTTGTGTTT+GGG 0.427601 3.2:+63763389 MS.gene69267:CDS
AGCTGATTCCTACAGGTACT+AGG 0.431361 3.2:+63766169 MS.gene69267:intron
CTGGTGTTGTTATTGCTAGT+GGG 0.433213 3.2:+63763554 MS.gene69267:CDS
CTATGCAAACTATTCGATCC+AGG 0.440876 3.2:+63763329 MS.gene69267:CDS
AGTTTCAGTTACTGGAATGA+TGG 0.445613 3.2:+63766246 MS.gene69267:CDS
GGTTATGGACTCACAGTCTT+CGG 0.464078 3.2:+63766268 MS.gene69267:CDS
CCTCCTTTACATGGCTCCAA+TGG 0.467277 3.2:+63764847 MS.gene69267:CDS
AATGAATCTCCTCCTTTACA+TGG 0.468540 3.2:+63764838 MS.gene69267:CDS
AGCAGATACCAAATTATCTT+GGG 0.471217 3.2:-63764950 None:intergenic
TTACATGGCTCCAATGGCTG+TGG 0.474205 3.2:+63764853 MS.gene69267:CDS
TACCTGAAGGGTCAGAGCAC+TGG 0.484949 3.2:-63765032 None:intergenic
AGAAGGAAAACCACAGCCAT+TGG 0.484967 3.2:-63764863 None:intergenic
AATCCAAATAAATGGAAACT+TGG 0.501652 3.2:-63764639 None:intergenic
GTTTCAGTTACTGGAATGAT+GGG 0.504412 3.2:+63766247 MS.gene69267:CDS
AAAAGGTTCTAAGACAATGA+AGG 0.505897 3.2:+63763117 MS.gene69267:CDS
ATAACAACACCAGTAACAAC+AGG 0.507549 3.2:-63763544 None:intergenic
ACTGGTGTTGTTATTGCTAG+TGG 0.510277 3.2:+63763553 MS.gene69267:CDS
ATCGCCTGATTAAACGATAC+AGG 0.511296 3.2:-63763433 None:intergenic
TTATAAGTGTGGCGGGAAGA+AGG 0.513711 3.2:-63764880 None:intergenic
CACCAGTAACAACAGGAACA+AGG 0.523976 3.2:-63763537 None:intergenic
GCTGATTCCTACAGGTACTA+GGG 0.530609 3.2:+63766170 MS.gene69267:intron
TTGGTATCTGCTATTTAACT+CGG 0.538514 3.2:+63764961 MS.gene69267:CDS
GTATCGTTTAATCAGGCGAT+TGG 0.541515 3.2:+63763436 MS.gene69267:CDS
CAGCCATTGGAGCCATGTAA+AGG 0.544406 3.2:-63764850 None:intergenic
GCCCTAAAATCAGTGCTACA+AGG 0.550043 3.2:+63764693 MS.gene69267:CDS
CAATAGAAGAACACCAATGT+TGG 0.550271 3.2:-63763191 None:intergenic
TTCTTCCATTATAAGTGTGG+CGG 0.557091 3.2:-63764888 None:intergenic
TCTTCCATTATAAGTGTGGC+GGG 0.560381 3.2:-63764887 None:intergenic
AAAGGTTCTAAGACAATGAA+GGG 0.568749 3.2:+63763118 MS.gene69267:CDS
GATCTTAAAGAATTGAACCC+TGG 0.570663 3.2:-63763347 None:intergenic
TGGATTCATTGTATGTGTTG+CGG 0.574960 3.2:+63764656 MS.gene69267:CDS
ACTTATAATGGAAGAAAATG+TGG 0.577031 3.2:+63764895 MS.gene69267:CDS
TTAGCTATGTTGCTATAGCA+TGG 0.581935 3.2:+63763293 MS.gene69267:CDS
TGGTGTTGTTATTGCTAGTG+GGG 0.582609 3.2:+63763555 MS.gene69267:CDS
TATGCAAACTATTCGATCCA+GGG 0.587277 3.2:+63763330 MS.gene69267:CDS
CAGGTACTAGGGAATGCTAA+AGG 0.600457 3.2:+63766181 MS.gene69267:intron
CTGGATCGAATAGTTTGCAT+AGG 0.611498 3.2:-63763328 None:intergenic
CAATAGGTCTTGTAGCAGCA+TGG 0.617332 3.2:+63763161 MS.gene69267:CDS
ACCAGTAACAACAGGAACAA+GGG 0.620205 3.2:-63763536 None:intergenic
CCATTGGAGCCATGTAAAGG+AGG 0.626569 3.2:-63764847 None:intergenic
TCATTCCAGTAACTGAAACT+GGG 0.636383 3.2:-63766243 None:intergenic
GCATGGTATTCATCCAACAT+TGG 0.639937 3.2:+63763178 MS.gene69267:CDS
ATAATGGAAGAAAATGTGGT+CGG 0.647373 3.2:+63764899 MS.gene69267:CDS
ACAGTTGAGACTTACCTGAA+GGG 0.665868 3.2:-63765044 None:intergenic
AAATGTGGTCGGAATCACGT+TGG 0.686602 3.2:+63764910 MS.gene69267:CDS
ACACGCAGTCATATGACACA+TGG 0.688652 3.2:-63763263 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTAAATTAAATATAGA+AGG - chr3.2:63765246-63765265 None:intergenic 10.0%
!! AAATAACAGATAAAAAATAA+AGG - chr3.2:63765386-63765405 None:intergenic 10.0%
!! ACTATTAAGACTTAAAATTT+AGG + chr3.2:63765095-63765114 MS.gene69267:intron 15.0%
!! GTAAAAATTAAAATGAAACA+AGG - chr3.2:63765474-63765493 None:intergenic 15.0%
!!! AAACTAATCGTTTTATTTTT+TGG + chr3.2:63764749-63764768 MS.gene69267:intron 15.0%
!!! ATTAAAAGTAATTTGAAATG+TGG - chr3.2:63765935-63765954 None:intergenic 15.0%
!!! ATTTAATTCAGTTTTTTGTA+TGG + chr3.2:63763722-63763741 MS.gene69267:intron 15.0%
!!! TTATATTATGACTTTTAAGA+GGG + chr3.2:63763492-63763511 MS.gene69267:CDS 15.0%
!!! TTCAAGTTATATATTCAAAT+CGG + chr3.2:63764776-63764795 MS.gene69267:intron 15.0%
!! AAATGAAATCACAACTAAAT+GGG - chr3.2:63765754-63765773 None:intergenic 20.0%
!! AACTAAATCTTAATCTCATT+GGG - chr3.2:63765191-63765210 None:intergenic 20.0%
!! AATGTATACAATTAGTGTTT+AGG + chr3.2:63765869-63765888 MS.gene69267:intron 20.0%
!! AGTCATAATATAAGCAAAAA+TGG - chr3.2:63763485-63763504 None:intergenic 20.0%
!! ATACAATGAATCCAAATAAA+TGG - chr3.2:63764650-63764669 None:intergenic 20.0%
!! GACAAAACTCTTAAATAAAT+AGG - chr3.2:63764177-63764196 None:intergenic 20.0%
!! TGTCATAAATATAAGTAGAT+GGG + chr3.2:63766021-63766040 MS.gene69267:intron 20.0%
!! TGTGAAAAATAAAAATACTC+TGG + chr3.2:63764572-63764591 MS.gene69267:intron 20.0%
!!! CATCAAATTTTATCTAGTTT+AGG + chr3.2:63763927-63763946 MS.gene69267:intron 20.0%
!!! CTTATATTATGACTTTTAAG+AGG + chr3.2:63763491-63763510 MS.gene69267:CDS 20.0%
!!! TAAATGGATTTATATGCTTT+AGG + chr3.2:63764103-63764122 MS.gene69267:intron 20.0%
!!! TATGAGATTATGTTTTGAAT+TGG + chr3.2:63763979-63763998 MS.gene69267:intron 20.0%
!!! TCAATGAGAAATTTGTTAAA+TGG + chr3.2:63764087-63764106 MS.gene69267:intron 20.0%
! AAACTAGACTAAATATTGCT+AGG - chr3.2:63765501-63765520 None:intergenic 25.0%
! AAACTGGGTTTCTAAATATT+AGG - chr3.2:63766231-63766250 None:intergenic 25.0%
! AATCCAAATAAATGGAAACT+TGG - chr3.2:63764642-63764661 None:intergenic 25.0%
! ACTTAGTGTAGTTAATCTTA+TGG + chr3.2:63764012-63764031 MS.gene69267:intron 25.0%
! AGAAACAAAAACAATGAACA+AGG - chr3.2:63763600-63763619 None:intergenic 25.0%
! AGCTACATAAATATTTGATC+AGG + chr3.2:63765783-63765802 MS.gene69267:intron 25.0%
! ATATAGAAGGAAAACAAAGA+AGG - chr3.2:63765233-63765252 None:intergenic 25.0%
! CAAATGAAATCACAACTAAA+TGG - chr3.2:63765755-63765774 None:intergenic 25.0%
! CAACTAAATCTTAATCTCAT+TGG - chr3.2:63765192-63765211 None:intergenic 25.0%
! CTTGTGCATTGTTAATTAAT+GGG + chr3.2:63763852-63763871 MS.gene69267:intron 25.0%
! GAAACAAAAACAATGAACAA+GGG - chr3.2:63763599-63763618 None:intergenic 25.0%
! GATGTCATCAAAATTAATTC+AGG + chr3.2:63765573-63765592 MS.gene69267:intron 25.0%
! GTGTCATAAATATAAGTAGA+TGG + chr3.2:63766020-63766039 MS.gene69267:intron 25.0%
! TCAAATATTTATGTAGCTGA+TGG - chr3.2:63765781-63765800 None:intergenic 25.0%
! TCTTGTGCATTGTTAATTAA+TGG + chr3.2:63763851-63763870 MS.gene69267:intron 25.0%
! TGAATAATGTGACTTATGTT+TGG + chr3.2:63763813-63763832 MS.gene69267:intron 25.0%
! TTTGTATCACAATATTAGCA+TGG + chr3.2:63765351-63765370 MS.gene69267:intron 25.0%
!! ACTTATAATGGAAGAAAATG+TGG + chr3.2:63764895-63764914 MS.gene69267:CDS 25.0%
!! ATTTTCTTCCATTATAAGTG+TGG - chr3.2:63764894-63764913 None:intergenic 25.0%
!! TATCTAGTTTAGGTTTGTTT+GGG + chr3.2:63763937-63763956 MS.gene69267:intron 25.0%
!! TTATCTAGTTTAGGTTTGTT+TGG + chr3.2:63763936-63763955 MS.gene69267:intron 25.0%
!!! ATATGAGGGGTTATTTTTTT+GGG + chr3.2:63763669-63763688 MS.gene69267:intron 25.0%
!!! ATTAATTTTGATGACATCTC+TGG - chr3.2:63765571-63765590 None:intergenic 25.0%
!!! GAATGATATTTGTTTTACCA+GGG + chr3.2:63764394-63764413 MS.gene69267:intron 25.0%
!!! TGAATGATATTTGTTTTACC+AGG + chr3.2:63764393-63764412 MS.gene69267:intron 25.0%
!!! TGTTATTTTGTAATGTGCAT+TGG + chr3.2:63765398-63765417 MS.gene69267:intron 25.0%
!!! TGTTTTTGTTTCTGCAATTT+TGG + chr3.2:63763607-63763626 MS.gene69267:intron 25.0%
!!! TTAAGAGTTTTGTCAAATAG+TGG + chr3.2:63764183-63764202 MS.gene69267:intron 25.0%
AAATCTTAATCTCATTGGGT+GGG - chr3.2:63765187-63765206 None:intergenic 30.0%
AAATGGGAGAGAAAGAAAAT+TGG - chr3.2:63765738-63765757 None:intergenic 30.0%
AATGTCACTAAACTTTCTAC+TGG + chr3.2:63765597-63765616 MS.gene69267:intron 30.0%
AGCAGATACCAAATTATCTT+GGG - chr3.2:63764953-63764972 None:intergenic 30.0%
AGTCTTAATAGTTTCGAAAG+AGG - chr3.2:63765087-63765106 None:intergenic 30.0%
ATAAATATAAGTAGATGGGC+TGG + chr3.2:63766025-63766044 MS.gene69267:intron 30.0%
ATGACTCATTAACTATGATC+AGG + chr3.2:63765681-63765700 MS.gene69267:intron 30.0%
ATGAGAATGGTATGATATGA+GGG + chr3.2:63763655-63763674 MS.gene69267:intron 30.0%
ATGTTTCGTGACCAAAAAAT+TGG - chr3.2:63765011-63765030 None:intergenic 30.0%
GAACCAAGTTTCCATTTATT+TGG + chr3.2:63764636-63764655 MS.gene69267:CDS 30.0%
GCATTGTTAATTAATGGGAA+TGG + chr3.2:63763857-63763876 MS.gene69267:intron 30.0%
GTCTTAATAGTTTCGAAAGA+GGG - chr3.2:63765086-63765105 None:intergenic 30.0%
TAAATCTTAATCTCATTGGG+TGG - chr3.2:63765188-63765207 None:intergenic 30.0%
TAATGGGAATGGTATGATAT+GGG + chr3.2:63763868-63763887 MS.gene69267:intron 30.0%
TAGCAGATACCAAATTATCT+TGG - chr3.2:63764954-63764973 None:intergenic 30.0%
TCTTCCTCTATTTGATCATA+GGG + chr3.2:63764612-63764631 MS.gene69267:intron 30.0%
TTAATGGGAATGGTATGATA+TGG + chr3.2:63763867-63763886 MS.gene69267:intron 30.0%
! AAGTATTTGTTGAGCAACTA+TGG + chr3.2:63763217-63763236 MS.gene69267:CDS 30.0%
! ATAATGGAAGAAAATGTGGT+CGG + chr3.2:63764899-63764918 MS.gene69267:CDS 30.0%
! GAATTTTGCTTTCTTCTGAA+GGG + chr3.2:63764715-63764734 MS.gene69267:CDS 30.0%
! TAAATATAAGTAGATGGGCT+GGG + chr3.2:63766026-63766045 MS.gene69267:intron 30.0%
! TTGGTATCTGCTATTTAACT+CGG + chr3.2:63764961-63764980 MS.gene69267:CDS 30.0%
! TTGTTCATTGTTGATGAGAA+TGG + chr3.2:63763642-63763661 MS.gene69267:intron 30.0%
!! AAAAGGTTCTAAGACAATGA+AGG + chr3.2:63763117-63763136 MS.gene69267:CDS 30.0%
!! AAAGGTTCTAAGACAATGAA+GGG + chr3.2:63763118-63763137 MS.gene69267:CDS 30.0%
!! TATTATGACTTTTAAGAGGG+AGG + chr3.2:63763495-63763514 MS.gene69267:CDS 30.0%
!! TTGGGTGTTGACTTTATTTA+TGG + chr3.2:63763687-63763706 MS.gene69267:intron 30.0%
!!! GATATGAGGGGTTATTTTTT+TGG + chr3.2:63763668-63763687 MS.gene69267:intron 30.0%
AACTATGATCAGGATTTGTG+TGG + chr3.2:63765691-63765710 MS.gene69267:intron 35.0%
AATGAATCTCCTCCTTTACA+TGG + chr3.2:63764838-63764857 MS.gene69267:CDS 35.0%
AATGGGAATGGTATGATATG+GGG + chr3.2:63763869-63763888 MS.gene69267:intron 35.0%
ACTATAGCATTGTAGTGTCA+TGG + chr3.2:63764288-63764307 MS.gene69267:intron 35.0%
AGTACAAAATAGTACACAGC+TGG - chr3.2:63766054-63766073 None:intergenic 35.0%
AGTCTGAATATGTTCTGTAC+TGG + chr3.2:63764367-63764386 MS.gene69267:intron 35.0%
AGTTTCAGTTACTGGAATGA+TGG + chr3.2:63766246-63766265 MS.gene69267:CDS 35.0%
ATAACAACACCAGTAACAAC+AGG - chr3.2:63763547-63763566 None:intergenic 35.0%
ATCATTCCAGTAACTGAAAC+TGG - chr3.2:63766247-63766266 None:intergenic 35.0%
ATGATATGGGGGAGTTATTT+GGG + chr3.2:63763881-63763900 MS.gene69267:intron 35.0%
CAATAGAAGAACACCAATGT+TGG - chr3.2:63763194-63763213 None:intergenic 35.0%
CATGTTAATTAACCATCCCA+AGG - chr3.2:63765838-63765857 None:intergenic 35.0%
GATCTTAAAGAATTGAACCC+TGG - chr3.2:63763350-63763369 None:intergenic 35.0%
GATGAGAATGGTATGATATG+AGG + chr3.2:63763654-63763673 MS.gene69267:intron 35.0%
GCAAAAATGGCAGTGAAAAA+AGG - chr3.2:63763472-63763491 None:intergenic 35.0%
GTCTTCCTCTATTTGATCAT+AGG + chr3.2:63764611-63764630 MS.gene69267:intron 35.0%
GTTTCAGTTACTGGAATGAT+GGG + chr3.2:63766247-63766266 MS.gene69267:CDS 35.0%
TAAGAAGTAATATCATGCCC+TGG - chr3.2:63764414-63764433 None:intergenic 35.0%
TATCTACCATTGCTTGAAAC+TGG - chr3.2:63764512-63764531 None:intergenic 35.0%
TATGATATGGGGGAGTTATT+TGG + chr3.2:63763880-63763899 MS.gene69267:intron 35.0%
TATGCAAACTATTCGATCCA+GGG + chr3.2:63763330-63763349 MS.gene69267:CDS 35.0%
TCAACACGTTTCTTCACAAT+AGG + chr3.2:63763145-63763164 MS.gene69267:CDS 35.0%
TCACAATATTAGCATGGTCT+TGG + chr3.2:63765357-63765376 MS.gene69267:intron 35.0%
TCATTCCAGTAACTGAAACT+GGG - chr3.2:63766246-63766265 None:intergenic 35.0%
TCTTCCTGTATCGTTTAATC+AGG + chr3.2:63763429-63763448 MS.gene69267:CDS 35.0%
TGACACATGGTGAGAAAAAT+AGG - chr3.2:63763253-63763272 None:intergenic 35.0%
TGAGAATGGTATGATATGAG+GGG + chr3.2:63763656-63763675 MS.gene69267:intron 35.0%
TGATATCCAGTTTCAAGCAA+TGG + chr3.2:63764503-63764522 MS.gene69267:intron 35.0%
TGGATTCATTGTATGTGTTG+CGG + chr3.2:63764656-63764675 MS.gene69267:CDS 35.0%
TTAGCTATGTTGCTATAGCA+TGG + chr3.2:63763293-63763312 MS.gene69267:CDS 35.0%
TTCACCCTATGATCAAATAG+AGG - chr3.2:63764619-63764638 None:intergenic 35.0%
TTCTTCCATTATAAGTGTGG+CGG - chr3.2:63764891-63764910 None:intergenic 35.0%
! CAGGTTTCTGAAGATCAAAA+AGG + chr3.2:63763100-63763119 MS.gene69267:CDS 35.0%
! GGAATTTTGCTTTCTTCTGA+AGG + chr3.2:63764714-63764733 MS.gene69267:CDS 35.0%
! GTTTGGGATGTGATTTGAAA+TGG + chr3.2:63763953-63763972 MS.gene69267:intron 35.0%
! TCTGTGTTTCTGTTGTGTTT+GGG + chr3.2:63763389-63763408 MS.gene69267:CDS 35.0%
! TGCAGTCATTTGTGTGATTT+TGG + chr3.2:63765421-63765440 MS.gene69267:intron 35.0%
! TTCTGTGTTTCTGTTGTGTT+TGG + chr3.2:63763388-63763407 MS.gene69267:CDS 35.0%
!! AAATATAAGTAGATGGGCTG+GGG + chr3.2:63766027-63766046 MS.gene69267:intron 35.0%
!! ATTGGTCAGGTTGACAAAAT+AGG - chr3.2:63764993-63765012 None:intergenic 35.0%
!! CAAGAATGTTAGGCTTTGTT+TGG + chr3.2:63765968-63765987 MS.gene69267:intron 35.0%
!! TTATCCCTTTGTTCGCTTTT+TGG - chr3.2:63766314-63766333 None:intergenic 35.0%
!!! TCCTTGTAGCACTGATTTTA+GGG - chr3.2:63764697-63764716 None:intergenic 35.0%
!!! TGTCAACCTGACCAATTTTT+TGG + chr3.2:63764997-63765016 MS.gene69267:CDS 35.0%
!!! TTCCTTGTAGCACTGATTTT+AGG - chr3.2:63764698-63764717 None:intergenic 35.0%
!!! TTTGGGTGTTGACTTTTGTA+TGG + chr3.2:63763898-63763917 MS.gene69267:intron 35.0%
AAAGCCTAACATTCTTGCAG+AGG - chr3.2:63765965-63765984 None:intergenic 40.0%
AACAGTTGAGACTTACCTGA+AGG - chr3.2:63765048-63765067 None:intergenic 40.0%
AAGCCTAACATTCTTGCAGA+GGG - chr3.2:63765964-63765983 None:intergenic 40.0%
ACAGTTGAGACTTACCTGAA+GGG - chr3.2:63765047-63765066 None:intergenic 40.0%
ACCAGTAACAACAGGAACAA+GGG - chr3.2:63763539-63763558 None:intergenic 40.0%
AGAAACCCAGTTTCAGTTAC+TGG + chr3.2:63766238-63766257 MS.gene69267:CDS 40.0%
ATCGCCTGATTAAACGATAC+AGG - chr3.2:63763436-63763455 None:intergenic 40.0%
ATGGGAATGGTATGATATGG+GGG + chr3.2:63763870-63763889 MS.gene69267:intron 40.0%
CAACAAGTTCTCTCATCTGT+TGG + chr3.2:63765271-63765290 MS.gene69267:intron 40.0%
CAACAGATGAGAGAACTTGT+TGG - chr3.2:63765273-63765292 None:intergenic 40.0%
CTATGCAAACTATTCGATCC+AGG + chr3.2:63763329-63763348 MS.gene69267:CDS 40.0%
GAAGCCAAAAAGCGAACAAA+GGG + chr3.2:63766307-63766326 MS.gene69267:CDS 40.0%
GAGACGATCCCAAGATAATT+TGG + chr3.2:63764942-63764961 MS.gene69267:CDS 40.0%
GCATGGTATTCATCCAACAT+TGG + chr3.2:63763178-63763197 MS.gene69267:CDS 40.0%
GTATCGTTTAATCAGGCGAT+TGG + chr3.2:63763436-63763455 MS.gene69267:CDS 40.0%
TCGTGACCAAAAAATTGGTC+AGG - chr3.2:63765006-63765025 None:intergenic 40.0%
TCTTCCATTATAAGTGTGGC+GGG - chr3.2:63764890-63764909 None:intergenic 40.0%
TGCTGCATATGAATGACCTT+GGG + chr3.2:63765819-63765838 MS.gene69267:intron 40.0%
TGGTTGAGTTCATAACTGAG+TGG + chr3.2:63765711-63765730 MS.gene69267:intron 40.0%
TTGCTGCATATGAATGACCT+TGG + chr3.2:63765818-63765837 MS.gene69267:intron 40.0%
TTTCCCTCTGCAAGAATGTT+AGG + chr3.2:63765958-63765977 MS.gene69267:intron 40.0%
! CTGGATCGAATAGTTTGCAT+AGG - chr3.2:63763331-63763350 None:intergenic 40.0%
! GTAGTTGGGACATCAGATTT+TGG + chr3.2:63765293-63765312 MS.gene69267:intron 40.0%
! TTGCTTTCTTCTGAAGGGTA+AGG + chr3.2:63764720-63764739 MS.gene69267:intron 40.0%
!! ACTGGTGTTGTTATTGCTAG+TGG + chr3.2:63763553-63763572 MS.gene69267:CDS 40.0%
!! CTGGTGTTGTTATTGCTAGT+GGG + chr3.2:63763554-63763573 MS.gene69267:CDS 40.0%
!! GTTACTGGAATGATGGGTTA+TGG + chr3.2:63766253-63766272 MS.gene69267:CDS 40.0%
!! TCTCTCATCTGTTGGTAGTT+GGG + chr3.2:63765279-63765298 MS.gene69267:intron 40.0%
!! TGGTGTTGTTATTGCTAGTG+GGG + chr3.2:63763555-63763574 MS.gene69267:CDS 40.0%
!! TTCTCTCATCTGTTGGTAGT+TGG + chr3.2:63765278-63765297 MS.gene69267:intron 40.0%
!! TTGTTTGGCACTGGATGTTT+TGG + chr3.2:63765983-63766002 MS.gene69267:intron 40.0%
AAATGTGGTCGGAATCACGT+TGG + chr3.2:63764910-63764929 MS.gene69267:CDS 45.0%
ACACGCAGTCATATGACACA+TGG - chr3.2:63763266-63763285 None:intergenic 45.0%
ACCCTTGTTCCTGTTGTTAC+TGG + chr3.2:63763535-63763554 MS.gene69267:CDS 45.0%
AGAAGGAAAACCACAGCCAT+TGG - chr3.2:63764866-63764885 None:intergenic 45.0%
CACCAGTAACAACAGGAACA+AGG - chr3.2:63763540-63763559 None:intergenic 45.0%
CAGGTACTAGGGAATGCTAA+AGG + chr3.2:63766181-63766200 MS.gene69267:intron 45.0%
CGAAGCCAAAAAGCGAACAA+AGG + chr3.2:63766306-63766325 MS.gene69267:CDS 45.0%
GCATATGAATGACCTTGGGA+TGG + chr3.2:63765823-63765842 MS.gene69267:intron 45.0%
GCCCTAAAATCAGTGCTACA+AGG + chr3.2:63764693-63764712 MS.gene69267:CDS 45.0%
GGTTATGGACTCACAGTCTT+CGG + chr3.2:63766268-63766287 MS.gene69267:CDS 45.0%
TACCTGTAGGAATCAGCTCT+AGG - chr3.2:63766167-63766186 None:intergenic 45.0%
TAGCATTCCCTAGTACCTGT+AGG - chr3.2:63766180-63766199 None:intergenic 45.0%
TCTTCCCGCCACACTTATAA+TGG + chr3.2:63764883-63764902 MS.gene69267:CDS 45.0%
! AGCTGATTCCTACAGGTACT+AGG + chr3.2:63766169-63766188 MS.gene69267:intron 45.0%
! ATCCTAGAGCTGATTCCTAC+AGG + chr3.2:63766162-63766181 MS.gene69267:intron 45.0%
! CAATAGGTCTTGTAGCAGCA+TGG + chr3.2:63763161-63763180 MS.gene69267:CDS 45.0%
! GCTGATTCCTACAGGTACTA+GGG + chr3.2:63766170-63766189 MS.gene69267:intron 45.0%
! GTTGAGTCAGCTTTGTCTCT+TGG + chr3.2:63764131-63764150 MS.gene69267:intron 45.0%
! GTTGGGACATCAGATTTTGG+TGG + chr3.2:63765296-63765315 MS.gene69267:intron 45.0%
! TTATAAGTGTGGCGGGAAGA+AGG - chr3.2:63764883-63764902 None:intergenic 45.0%
!! TGACTTTTAAGAGGGAGGCT+TGG + chr3.2:63763500-63763519 MS.gene69267:CDS 45.0%
!! TGTTAGGCTTTGTTTGGCAC+TGG + chr3.2:63765974-63765993 MS.gene69267:intron 45.0%
!!! TTTTATAATCAATTTTATTT+TGG + chr3.2:63765636-63765655 MS.gene69267:intron 5.0%
CAGCCATTGGAGCCATGTAA+AGG - chr3.2:63764853-63764872 None:intergenic 50.0%
CCATTGGAGCCATGTAAAGG+AGG - chr3.2:63764850-63764869 None:intergenic 50.0%
CCTCCTTTACATGGCTCCAA+TGG + chr3.2:63764847-63764866 MS.gene69267:CDS 50.0%
TTACATGGCTCCAATGGCTG+TGG + chr3.2:63764853-63764872 MS.gene69267:CDS 50.0%
TACCAGTGCTCTGACCCTTC+AGG + chr3.2:63765030-63765049 MS.gene69267:CDS 55.0%
TACCTGAAGGGTCAGAGCAC+TGG - chr3.2:63765035-63765054 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 63763088 63766333 63763088 ID=MS.gene69267
chr3.2 mRNA 63763088 63766333 63763088 ID=MS.gene69267.t1;Parent=MS.gene69267
chr3.2 exon 63763088 63763576 63763088 ID=MS.gene69267.t1.exon1;Parent=MS.gene69267.t1
chr3.2 CDS 63763088 63763576 63763088 ID=cds.MS.gene69267.t1;Parent=MS.gene69267.t1
chr3.2 exon 63764633 63764736 63764633 ID=MS.gene69267.t1.exon2;Parent=MS.gene69267.t1
chr3.2 CDS 63764633 63764736 63764633 ID=cds.MS.gene69267.t1;Parent=MS.gene69267.t1
chr3.2 exon 63764823 63765051 63764823 ID=MS.gene69267.t1.exon3;Parent=MS.gene69267.t1
chr3.2 CDS 63764823 63765051 63764823 ID=cds.MS.gene69267.t1;Parent=MS.gene69267.t1
chr3.2 exon 63766184 63766333 63766184 ID=MS.gene69267.t1.exon4;Parent=MS.gene69267.t1
chr3.2 CDS 63766184 63766333 63766184 ID=cds.MS.gene69267.t1;Parent=MS.gene69267.t1
Gene Sequence

>MS.gene69267

ATGAAATTGTTACAGGTTTCTGAAGATCAAAAAGGTTCTAAGACAATGAAGGGTGCTTCAACACGTTTCTTCACAATAGGTCTTGTAGCAGCATGGTATTCATCCAACATTGGTGTTCTTCTATTGAACAAGTATTTGTTGAGCAACTATGGTTTCAAGTATCCTATTTTTCTCACCATGTGTCATATGACTGCGTGTTCTTTGTTTAGCTATGTTGCTATAGCATGGATGAAGATTGTTCCTATGCAAACTATTCGATCCAGGGTTCAATTCTTTAAGATCTCTGCTTTGAGTTTGATTTTCTGTGTTTCTGTTGTGTTTGGGAACATTTCGCTTCGATATCTTCCTGTATCGTTTAATCAGGCGATTGGTGCGACGACGCCTTTTTTCACTGCCATTTTTGCTTATATTATGACTTTTAAGAGGGAGGCTTGGCTCACTTATCTTACCCTTGTTCCTGTTGTTACTGGTGTTGTTATTGCTAGTGGGGTATGTAACATTTCTATCACCCTTGTTCATTGTTTTTGTTTCTGCAATTTTGGATATGTATGATATTGTTCATTGTTGATGAGAATGGTATGATATGAGGGGTTATTTTTTTGGGTGTTGACTTTATTTATGGTTTGATCATCAAATTTAATTCAGTTTTTTGTATGGTTCTTCTGTGACAATAATTGATTTTGAGCAAATTAATTCTGTAAAATTGATTCTCACTAAAAGTGAGTTGAATAATGTGACTTATGTTTGGATGATTAGATAATGATCTTGTGCATTGTTAATTAATGGGAATGGTATGATATGGGGGAGTTATTTGGGTGTTGACTTTTGTATGGTTTAATCATCAAATTTTATCTAGTTTAGGTTTGTTTGGGATGTGATTTGAAATGGTTATATGAGATTATGTTTTGAATTGGAAAGTTAGAAACTTAGTGTAGTTAATCTTATGGATCATTATATATGTTCAAAAGACTTATTTTACGTTTTTTTTCTTTCTTCTTTTCAATGAGAAATTTGTTAAATGGATTTATATGCTTTAGGCTATTGTTGAGTCAGCTTTGTCTCTTGGTGAGAGATAACTGATATATTCCTATTTATTTAAGAGTTTTGTCAAATAGTGGCGCTTTAACATAGCAGAATTTGCACAAACTGTTATTGTTCTTTGATATGCTTTTAGTACAAAGTTTTGACAAATATAACAACACTATAGCATTGTAGTGTCATGGAATTTGTACAAAACGCTATTTTCGTCGATTGACAACTCTATTAAACTCAACACAATAGTCTGAATATGTTCTGTACTGGCGTTGAATGATATTTGTTTTACCAGGGCATGATATTACTTCTTAAAACACGTTTGAAATACATTATTGAGAATCTGAGTAATACATGTTTACACTGTCACTAAACTGAGTTCTTGATATCCAGTTTCAAGCAATGGTAGATATTTTTTTTTTCTCTGATGTATTCTTTGAGTGAAATTGATATGTGAAAAATAAAAATACTCTGGCTTCTGATATGTTTTTGTCTTCCTCTATTTGATCATAGGGTGAACCAAGTTTCCATTTATTTGGATTCATTGTATGTGTTGCGGCTACAGCTGCAAGAGCCCTAAAATCAGTGCTACAAGGAATTTTGCTTTCTTCTGAAGGGTAAGGATAAAGAAACTAATCGTTTTATTTTTTGGTGTTTTCAAGTTATATATTCAAATCGGACTGAGATCTTTATTGTGTATCAGAGAGAAGCTGAATTCAATGAATCTCCTCCTTTACATGGCTCCAATGGCTGTGGTTTTCCTTCTTCCCGCCACACTTATAATGGAAGAAAATGTGGTCGGAATCACGTTGGCTCTCGCTAGAGACGATCCCAAGATAATTTGGTATCTGCTATTTAACTCGGCTCTTGCCTATTTTGTCAACCTGACCAATTTTTTGGTCACGAAACATACCAGTGCTCTGACCCTTCAGGTAAGTCTCAACTGTTCAAATTAGTTGCTATCCCTCTTTCGAAACTATTAAGACTTAAAATTTAGGTCAATAGTTGAGTTATAGACATAATCTATGATAGTCATTATAGCATAGTTTGTTCATGTAATTAATCCCACCCAATGAGATTAAGATTTAGTTGTTGACTTGTTGTTGTTATCCTTCTTTGTTTTCCTTCTATATTTAATTTAACTTTCACTCCAACAAGTTCTCTCATCTGTTGGTAGTTGGGACATCAGATTTTGGTGGTTGTCAAATGCTCTTATCTTCAAATCACAAGATTTGTATCACAATATTAGCATGGTCTTGGTCACCTTTATTTTTTATCTGTTATTTTGTAATGTGCATTGGTGCAGTCATTTGTGTGATTTTGGAATCTCTTGTTTTTTGAAAAAAAATTACCTTGTTTCATTTTAATTTTTACAATGCCTAGCAATATTTAGTCTAGTTTAACAAAATTTATAATATGAAATATTTATTGTTTATTTTCTGCGATTACCAGAGATGTCATCAAAATTAATTCAGGAAATGTCACTAAACTTTCTACTGGATATGCTTTGATAGTGTTTTATAATCAATTTTATTTTGGTTTTTATAATCAGTTTTTCAAGATGACTCATTAACTATGATCAGGATTTGTGTGGTTGAGTTCATAACTGAGTGGACCAATTTTCTTTCTCTCCCATTTAGTTGTGATTTCATTTGATACCATCAGCTACATAAATATTTGATCAGGTTTTGCAGTGAATTGCTGCATATGAATGACCTTGGGATGGTTAATTAACATGTAAATTTTGTAAATGTATACAATTAGTGTTTAGGTTGTTAGTCATGAAAACATACAATCATAAATGAAATTCTACCACATTTCAAATTACTTTTAATTTTTTTCCCTCTGCAAGAATGTTAGGCTTTGTTTGGCACTGGATGTTTTGGATCAATGAAATGAAGTGTCATAAATATAAGTAGATGGGCTGGGGACCAGCTGTGTACTATTTTGTACTCTGATATTTAGTTGTTGCTTTAAGTCATTTTTTTCAACAATTTCTGTCATCATGCTTGAAGTGATCATCTAAATTGATGTTTTAACTAATCCTAGAGCTGATTCCTACAGGTACTAGGGAATGCTAAAGGAGCTGTAGCTGTAGTAGTTTCAATCCTAATATTTAGAAACCCAGTTTCAGTTACTGGAATGATGGGTTATGGACTCACAGTCTTCGGAGTAATACTTTACAGCGAAGCCAAAAAGCGAACAAAGGGATAA

Protein sequence

>MS.gene69267.t1

MKLLQVSEDQKGSKTMKGASTRFFTIGLVAAWYSSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACSLFSYVAIAWMKIVPMQTIRSRVQFFKISALSLIFCVSVVFGNISLRYLPVSFNQAIGATTPFFTAIFAYIMTFKREAWLTYLTLVPVVTGVVIASGGEPSFHLFGFIVCVAATAARALKSVLQGILLSSEGEKLNSMNLLLYMAPMAVVFLLPATLIMEENVVGITLALARDDPKIIWYLLFNSALAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMMGYGLTVFGVILYSEAKKRTKG