Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015099.t1 | XP_013461757.1 | 98.2 | 326 | 6 | 0 | 1 | 326 | 1 | 326 | 8.90E-188 | 666 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015099.t1 | Q10170 | 32.6 | 334 | 202 | 8 | 6 | 318 | 21 | 352 | 1.1e-50 | 201.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015099.t1 | G8A2A3 | 98.2 | 326 | 6 | 0 | 1 | 326 | 1 | 326 | 6.4e-188 | 666.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015099 | MS.gene91142 | PPI |
| MS.gene015099 | MS.gene33297 | PPI |
| MS.gene88624 | MS.gene015099 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015099.t1 | MTR_3g102800 | 98.160 | 326 | 6 | 0 | 1 | 326 | 1 | 326 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015099.t1 | AT5G65860 | 75.155 | 322 | 78 | 1 | 4 | 323 | 25 | 346 | 0.0 | 527 |
| MS.gene015099.t1 | AT5G65860 | 75.155 | 322 | 78 | 1 | 4 | 323 | 5 | 326 | 0.0 | 527 |
| MS.gene015099.t1 | AT5G65860 | 75.155 | 322 | 78 | 1 | 4 | 323 | 5 | 326 | 0.0 | 527 |
Find 100 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCTTGAGCTTGAGAATT+TGG | 0.148087 | 3.2:+85309886 | MS.gene015099:CDS |
| TGATTCCGGTTATGATTATT+TGG | 0.213704 | 3.2:+85308533 | MS.gene015099:CDS |
| CATGTACTCAATATTGGATT+TGG | 0.261666 | 3.2:+85308675 | MS.gene015099:CDS |
| TCTCTTGAGCTTGAGAATTT+GGG | 0.285212 | 3.2:+85309887 | MS.gene015099:CDS |
| ATTGCCTGTTAAGGATTGTT+TGG | 0.285893 | 3.2:+85309931 | MS.gene015099:CDS |
| TTGCCTGTTAAGGATTGTTT+GGG | 0.287460 | 3.2:+85309932 | MS.gene015099:CDS |
| CTATGCGAGGCGGCGATTAA+AGG | 0.287831 | 3.2:+85307973 | MS.gene015099:CDS |
| GAAGAAGCTCATAAGCTTCT+TGG | 0.296988 | 3.2:-85308197 | None:intergenic |
| GTTATGATTATTTGGAAGAT+AGG | 0.317017 | 3.2:+85308541 | MS.gene015099:CDS |
| TTCTCTCCGCCGGTGCTCCT+TGG | 0.327627 | 3.2:+85308118 | MS.gene015099:CDS |
| ACGTATGCTTCGCACGGGTT+GGG | 0.340731 | 3.2:+85308779 | MS.gene015099:CDS |
| TCTTTCTTCAATGGCCTTTG+TGG | 0.351869 | 3.2:+85309824 | MS.gene015099:CDS |
| ATTAATTCCATTGCCTGTTA+AGG | 0.360892 | 3.2:+85309922 | MS.gene015099:CDS |
| CATGCTAAAGCTGTTTGTTC+AGG | 0.364371 | 3.2:+85308645 | MS.gene015099:CDS |
| GGTGGTCATGTACTCAATAT+TGG | 0.375114 | 3.2:+85308669 | MS.gene015099:CDS |
| CTCAATATTGGATTTGGAAT+GGG | 0.395612 | 3.2:+85308681 | MS.gene015099:CDS |
| GGAATATACTCTTTCTTCAA+TGG | 0.395895 | 3.2:+85309815 | MS.gene015099:CDS |
| TCATCTGCAGACTGACAAAC+AGG | 0.396199 | 3.2:-85310013 | None:intergenic |
| AACGTATGCTTCGCACGGGT+TGG | 0.424986 | 3.2:+85308778 | MS.gene015099:CDS |
| TGCTTTGCGGCGAGCATAAG+AGG | 0.429396 | 3.2:-85308069 | None:intergenic |
| ATCTTCCAAATAATCATAAC+CGG | 0.430063 | 3.2:-85308538 | None:intergenic |
| GAAAAGAAAAGCACTGATTC+CGG | 0.430789 | 3.2:+85308519 | MS.gene015099:CDS |
| CCATGTTGTTTACTGCCACT+TGG | 0.440964 | 3.2:+85309862 | MS.gene015099:CDS |
| CGTATGCTTCGCACGGGTTG+GGG | 0.445579 | 3.2:+85308780 | MS.gene015099:CDS |
| GGGATATTCTTTGACACCTA+CGG | 0.456919 | 3.2:+85309731 | MS.gene015099:intron |
| TTAGCATGAGCCTCCATCAA+TGG | 0.470308 | 3.2:-85308630 | None:intergenic |
| GGGTGCATGGCCGTGCTTTG+CGG | 0.480399 | 3.2:-85308082 | None:intergenic |
| ATTCGATCTGAATTAGTGTT+GGG | 0.480443 | 3.2:+85308480 | MS.gene015099:CDS |
| CCACCCGGCTTCAACAATAC+AGG | 0.482020 | 3.2:-85309794 | None:intergenic |
| GGATATTCTTTGACACCTAC+GGG | 0.485801 | 3.2:+85309732 | MS.gene015099:CDS |
| ACTCAATATTGGATTTGGAA+TGG | 0.488555 | 3.2:+85308680 | MS.gene015099:CDS |
| TATGAGCTTCTTCTCAATGC+TGG | 0.492065 | 3.2:+85308207 | MS.gene015099:CDS |
| TTCTTCAATGGCCTTTGTGG+TGG | 0.493941 | 3.2:+85309827 | MS.gene015099:CDS |
| GTTGGGAACAATTGCTAGGA+AGG | 0.504005 | 3.2:+85308497 | MS.gene015099:CDS |
| TTATGATTATTTGGAAGATA+GGG | 0.505378 | 3.2:+85308542 | MS.gene015099:CDS |
| GGAGAGAAGGATGTCGAGGA+TGG | 0.507596 | 3.2:-85308103 | None:intergenic |
| CTCGACATCCTTCTCTCCGC+CGG | 0.511422 | 3.2:+85308108 | MS.gene015099:CDS |
| TCAACAATGGTATGTTTCAC+AGG | 0.511587 | 3.2:-85308735 | None:intergenic |
| AAGGTGTCAAACACAGATAC+TGG | 0.517912 | 3.2:+85309969 | MS.gene015099:CDS |
| TCTCCCTGTATTGTTGAAGC+CGG | 0.518751 | 3.2:+85309790 | MS.gene015099:CDS |
| GGCATGGGAGAAGCCATTGA+TGG | 0.521455 | 3.2:+85308617 | MS.gene015099:CDS |
| TATTCGATCTGAATTAGTGT+TGG | 0.521798 | 3.2:+85308479 | MS.gene015099:CDS |
| CATATGTTTCAAGCTGAGAC+AGG | 0.523440 | 3.2:-85308848 | None:intergenic |
| TCTCCTTCCAACCTTTCCGC+CGG | 0.523539 | 3.2:+85308150 | MS.gene015099:CDS |
| CTCTTGAGCTTGAGAATTTG+GGG | 0.525010 | 3.2:+85309888 | MS.gene015099:CDS |
| AAACAATCCTTAACAGGCAA+TGG | 0.525589 | 3.2:-85309929 | None:intergenic |
| CTCCCTGTATTGTTGAAGCC+GGG | 0.525798 | 3.2:+85309791 | MS.gene015099:CDS |
| GTTACTCATTTCGACGGCGA+TGG | 0.526133 | 3.2:+85308039 | MS.gene015099:CDS |
| AAAGCTGTTTGTTCAGGAGG+TGG | 0.540005 | 3.2:+85308651 | MS.gene015099:CDS |
| AAGGAGCACCGGCGGAGAGA+AGG | 0.543782 | 3.2:-85308116 | None:intergenic |
| TAGTGTTGGGAACAATTGCT+AGG | 0.547152 | 3.2:+85308493 | MS.gene015099:CDS |
| AGCATACGTTCATAAACCTC+AGG | 0.548913 | 3.2:-85308765 | None:intergenic |
| GCTAAAGCTGTTTGTTCAGG+AGG | 0.553788 | 3.2:+85308648 | MS.gene015099:CDS |
| TCTCAGCTTGAAACATATGA+TGG | 0.557266 | 3.2:+85308852 | MS.gene015099:CDS |
| TCAACAATACAGGGAGATGT+TGG | 0.557688 | 3.2:-85309784 | None:intergenic |
| TTGCGAAATCACCGGCGGAA+AGG | 0.562943 | 3.2:-85308161 | None:intergenic |
| GGATGTCGAGGATGGGTGCA+TGG | 0.563108 | 3.2:-85308095 | None:intergenic |
| GAAATGAGTAACGTCGGCAC+CGG | 0.571997 | 3.2:-85308028 | None:intergenic |
| GATTAAAGGTGAGACGGAGA+AGG | 0.572642 | 3.2:+85307987 | MS.gene015099:CDS |
| CTTATGCTCGCCGCAAAGCA+CGG | 0.574060 | 3.2:+85308072 | MS.gene015099:CDS |
| GCCGACGTTACTCATTTCGA+CGG | 0.576572 | 3.2:+85308033 | MS.gene015099:CDS |
| GAGAGAAGGATGTCGAGGAT+GGG | 0.580848 | 3.2:-85308102 | None:intergenic |
| GAAATCACCGGCGGAAAGGT+TGG | 0.582456 | 3.2:-85308157 | None:intergenic |
| TTCTTGCATTGCGAAATCAC+CGG | 0.583608 | 3.2:-85308169 | None:intergenic |
| AAGAGCGTTCCAAGGAGCAC+CGG | 0.584379 | 3.2:-85308127 | None:intergenic |
| CACCCGGCTTCAACAATACA+GGG | 0.584983 | 3.2:-85309793 | None:intergenic |
| ACAATACAGGGAGATGTTGG+TGG | 0.586371 | 3.2:-85309781 | None:intergenic |
| GTAAAGTCTATTATTGACTC+CGG | 0.590503 | 3.2:+85308009 | MS.gene015099:CDS |
| GAAGGAGAAAGAGCGTTCCA+AGG | 0.591032 | 3.2:-85308135 | None:intergenic |
| TCGCACGGGTTGGGGTGAGA+AGG | 0.593861 | 3.2:+85308788 | MS.gene015099:CDS |
| CATTGTTGAGGCTCATCCTG+AGG | 0.595016 | 3.2:+85308749 | MS.gene015099:CDS |
| AGCGTTCCAAGGAGCACCGG+CGG | 0.601767 | 3.2:-85308124 | None:intergenic |
| TGAGAGTAAAGCTGTGATGA+TGG | 0.605332 | 3.2:+85308596 | MS.gene015099:CDS |
| TATGAACGTATGCTTCGCAC+GGG | 0.607053 | 3.2:+85308774 | MS.gene015099:CDS |
| TCACCGGCGGAAAGGTTGGA+AGG | 0.609268 | 3.2:-85308153 | None:intergenic |
| CCAAGTGGCAGTAAACAACA+TGG | 0.611294 | 3.2:-85309862 | None:intergenic |
| GGTGATTTCGCAATGCAAGA+AGG | 0.613606 | 3.2:+85308171 | MS.gene015099:CDS |
| TTATGAACGTATGCTTCGCA+CGG | 0.616186 | 3.2:+85308773 | MS.gene015099:CDS |
| CCTGTATTGTTGAAGCCGGG+TGG | 0.618155 | 3.2:+85309794 | MS.gene015099:CDS |
| GTAAAGCTGTGATGATGGCA+TGG | 0.618846 | 3.2:+85308601 | MS.gene015099:CDS |
| CGGCGGAGAGAAGGATGTCG+AGG | 0.626647 | 3.2:-85308107 | None:intergenic |
| AAGAAAGAGTATATTCCACC+CGG | 0.629337 | 3.2:-85309809 | None:intergenic |
| TGCCTGTTAAGGATTGTTTG+GGG | 0.632646 | 3.2:+85309933 | MS.gene015099:CDS |
| GGCGGCGATTAAAGGTGAGA+CGG | 0.637047 | 3.2:+85307981 | MS.gene015099:CDS |
| ATGGGAGAAGCCATTGATGG+AGG | 0.639979 | 3.2:+85308620 | MS.gene015099:CDS |
| GCCTGTTAAGGATTGTTTGG+GGG | 0.641124 | 3.2:+85309934 | MS.gene015099:CDS |
| AGGCAATGGAATTAATTGTG+TGG | 0.643792 | 3.2:-85309915 | None:intergenic |
| GAAGGAAGAAGAACTATGCG+AGG | 0.647053 | 3.2:+85307960 | MS.gene015099:CDS |
| CTCAGGATGAGCCTCAACAA+TGG | 0.655173 | 3.2:-85308748 | None:intergenic |
| TGTGAAACATACCATTGTTG+AGG | 0.661097 | 3.2:+85308737 | MS.gene015099:CDS |
| TAAAGCTGTGATGATGGCAT+GGG | 0.687762 | 3.2:+85308602 | MS.gene015099:CDS |
| TTGCATTGCGAAATCACCGG+CGG | 0.690041 | 3.2:-85308166 | None:intergenic |
| AAAATGCATTACCACCACAA+AGG | 0.694739 | 3.2:-85309838 | None:intergenic |
| CAAGCTCAAGAGATACCAAG+TGG | 0.699247 | 3.2:-85309877 | None:intergenic |
| GCCGTCGAAATGAGTAACGT+CGG | 0.710374 | 3.2:-85308034 | None:intergenic |
| GGAAGAAGAACTATGCGAGG+CGG | 0.711413 | 3.2:+85307963 | MS.gene015099:CDS |
| CATCTGCAGACTGACAAACA+GGG | 0.712802 | 3.2:-85310012 | None:intergenic |
| GTCGTCATAGTACTCCCCGT+AGG | 0.723736 | 3.2:-85309747 | None:intergenic |
| GATATTCTTTGACACCTACG+GGG | 0.737280 | 3.2:+85309733 | MS.gene015099:CDS |
| CTGCAGACTGACAAACAGGG+AGG | 0.782216 | 3.2:-85310009 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAAAATCAAAACAAA+TGG | - | chr3.2:85309709-85309728 | None:intergenic | 15.0% |
| !!! | TTTTTGTATTTTACTTTGTT+AGG | + | chr3.2:85308456-85308475 | MS.gene015099:intron | 15.0% |
| !! | AAAAAAAAAACAGCAGTAAT+AGG | + | chr3.2:85309162-85309181 | MS.gene015099:intron | 20.0% |
| !! | AAAAAAAAACAGCAGTAATA+GGG | + | chr3.2:85309163-85309182 | MS.gene015099:intron | 20.0% |
| !! | AACTTAAATACAAATGCTTA+TGG | + | chr3.2:85309031-85309050 | MS.gene015099:intron | 20.0% |
| !! | TTATGATTATTTGGAAGATA+GGG | + | chr3.2:85308542-85308561 | MS.gene015099:CDS | 20.0% |
| !!! | AATAGAATTGATTTCGTAAA+AGG | + | chr3.2:85309004-85309023 | MS.gene015099:intron | 20.0% |
| !!! | TCATTTTCACAAATTATTAC+CGG | - | chr3.2:85308305-85308324 | None:intergenic | 20.0% |
| !!! | TGTTTTGATTTTCTTTTTCA+GGG | + | chr3.2:85309711-85309730 | MS.gene015099:intron | 20.0% |
| !!! | TTGTTTTGATTTTCTTTTTC+AGG | + | chr3.2:85309710-85309729 | MS.gene015099:intron | 20.0% |
| !!! | TTTTAGTGAAGATAAAGTAA+TGG | + | chr3.2:85308569-85308588 | MS.gene015099:CDS | 20.0% |
| ! | ATCTTCCAAATAATCATAAC+CGG | - | chr3.2:85308541-85308560 | None:intergenic | 25.0% |
| ! | ATTAAAAGTAGCATCTATGT+TGG | - | chr3.2:85309326-85309345 | None:intergenic | 25.0% |
| ! | GTTATGATTATTTGGAAGAT+AGG | + | chr3.2:85308541-85308560 | MS.gene015099:CDS | 25.0% |
| ! | TAACCACATAAATTTCACAA+AGG | - | chr3.2:85309215-85309234 | None:intergenic | 25.0% |
| ! | TGTTTAACACTAACATGTAT+TGG | + | chr3.2:85308366-85308385 | MS.gene015099:intron | 25.0% |
| ! | TTACTTAATGTTAAAAAGCC+AGG | + | chr3.2:85309482-85309501 | MS.gene015099:intron | 25.0% |
| ! | TTAGTGAAAATACATGTCTT+TGG | - | chr3.2:85309401-85309420 | None:intergenic | 25.0% |
| ! | TTGCTTATGTGAAAAACATA+GGG | + | chr3.2:85309609-85309628 | MS.gene015099:intron | 25.0% |
| ! | TTTCACAAAGGAAAAAACTT+AGG | - | chr3.2:85309203-85309222 | None:intergenic | 25.0% |
| ! | TTTCCTTTGTGAAATTTATG+TGG | + | chr3.2:85309209-85309228 | MS.gene015099:intron | 25.0% |
| ! | TTTGCTTATGTGAAAAACAT+AGG | + | chr3.2:85309608-85309627 | MS.gene015099:intron | 25.0% |
| !! | GAAAATGTTCAGATCATTTT+TGG | + | chr3.2:85308810-85308829 | MS.gene015099:CDS | 25.0% |
| !! | GGTTACAATTTAGTTTCTAA+GGG | + | chr3.2:85309230-85309249 | MS.gene015099:intron | 25.0% |
| !! | TCTAATCAAACTAAGTATTG+AGG | + | chr3.2:85309350-85309369 | MS.gene015099:intron | 25.0% |
| !! | TGGTTACAATTTAGTTTCTA+AGG | + | chr3.2:85309229-85309248 | MS.gene015099:intron | 25.0% |
| !!! | AAGTGTTTTTGTTTTATCAG+TGG | - | chr3.2:85309464-85309483 | None:intergenic | 25.0% |
| ACTCAATATTGGATTTGGAA+TGG | + | chr3.2:85308680-85308699 | MS.gene015099:CDS | 30.0% | |
| ATAGTTAATTAGACACAGAG+TGG | - | chr3.2:85308246-85308265 | None:intergenic | 30.0% | |
| ATTAATTCCATTGCCTGTTA+AGG | + | chr3.2:85309922-85309941 | MS.gene015099:CDS | 30.0% | |
| ATTCGATCTGAATTAGTGTT+GGG | + | chr3.2:85308480-85308499 | MS.gene015099:CDS | 30.0% | |
| ATTTCAGCACTAGAATTGAT+TGG | + | chr3.2:85308930-85308949 | MS.gene015099:intron | 30.0% | |
| CATGTACTCAATATTGGATT+TGG | + | chr3.2:85308675-85308694 | MS.gene015099:CDS | 30.0% | |
| GGAATATACTCTTTCTTCAA+TGG | + | chr3.2:85309815-85309834 | MS.gene015099:CDS | 30.0% | |
| TAAGGGAAGTTGTTTATGAT+TGG | + | chr3.2:85309247-85309266 | MS.gene015099:intron | 30.0% | |
| TATTCGATCTGAATTAGTGT+TGG | + | chr3.2:85308479-85308498 | MS.gene015099:CDS | 30.0% | |
| TGATTCCGGTTATGATTATT+TGG | + | chr3.2:85308533-85308552 | MS.gene015099:CDS | 30.0% | |
| TGCTGAAATTAAACATGTAC+TGG | - | chr3.2:85308919-85308938 | None:intergenic | 30.0% | |
| TTATGTGAAAAACATAGGGA+AGG | + | chr3.2:85309613-85309632 | MS.gene015099:intron | 30.0% | |
| TTTCAGCACTAGAATTGATT+GGG | + | chr3.2:85308931-85308950 | MS.gene015099:intron | 30.0% | |
| ! | CTCAATATTGGATTTGGAAT+GGG | + | chr3.2:85308681-85308700 | MS.gene015099:CDS | 30.0% |
| ! | TACTATTTTGCAACGGTATT+TGG | + | chr3.2:85309534-85309553 | MS.gene015099:intron | 30.0% |
| !! | GTAAAGTCTATTATTGACTC+CGG | + | chr3.2:85308009-85308028 | MS.gene015099:CDS | 30.0% |
| AAAATGCATTACCACCACAA+AGG | - | chr3.2:85309841-85309860 | None:intergenic | 35.0% | |
| AAACAATCCTTAACAGGCAA+TGG | - | chr3.2:85309932-85309951 | None:intergenic | 35.0% | |
| ACAATCCAGTTACAATTACC+AGG | - | chr3.2:85309663-85309682 | None:intergenic | 35.0% | |
| AGGCAATGGAATTAATTGTG+TGG | - | chr3.2:85309918-85309937 | None:intergenic | 35.0% | |
| ATAAGCAAAACTTGCATTCC+TGG | - | chr3.2:85309597-85309616 | None:intergenic | 35.0% | |
| ATCTCTTGAGCTTGAGAATT+TGG | + | chr3.2:85309886-85309905 | MS.gene015099:CDS | 35.0% | |
| ATTGCCTGTTAAGGATTGTT+TGG | + | chr3.2:85309931-85309950 | MS.gene015099:CDS | 35.0% | |
| GTTTGTTTGATTGTAATGCC+TGG | + | chr3.2:85309642-85309661 | MS.gene015099:intron | 35.0% | |
| TAATGCCTGGTAATTGTAAC+TGG | + | chr3.2:85309655-85309674 | MS.gene015099:intron | 35.0% | |
| TCAACAATGGTATGTTTCAC+AGG | - | chr3.2:85308738-85308757 | None:intergenic | 35.0% | |
| TCACTAACATCACAGTTGAT+AGG | + | chr3.2:85309414-85309433 | MS.gene015099:intron | 35.0% | |
| TCAGTGGATAGTATCAGAAT+TGG | - | chr3.2:85309448-85309467 | None:intergenic | 35.0% | |
| TCTCAGCTTGAAACATATGA+TGG | + | chr3.2:85308852-85308871 | MS.gene015099:CDS | 35.0% | |
| TCTCTTGAGCTTGAGAATTT+GGG | + | chr3.2:85309887-85309906 | MS.gene015099:CDS | 35.0% | |
| TGTGAAACATACCATTGTTG+AGG | + | chr3.2:85308737-85308756 | MS.gene015099:CDS | 35.0% | |
| TTGCCTGTTAAGGATTGTTT+GGG | + | chr3.2:85309932-85309951 | MS.gene015099:CDS | 35.0% | |
| ! | AAGAAAGAGTATATTCCACC+CGG | - | chr3.2:85309812-85309831 | None:intergenic | 35.0% |
| ! | TGTGAGCTACTATTTTGCAA+CGG | + | chr3.2:85309527-85309546 | MS.gene015099:intron | 35.0% |
| !! | GAAAAGAAAAGCACTGATTC+CGG | + | chr3.2:85308519-85308538 | MS.gene015099:CDS | 35.0% |
| !!! | TTCAGATCATTTTTGGTCGT+TGG | + | chr3.2:85308817-85308836 | MS.gene015099:CDS | 35.0% |
| AGCATACGTTCATAAACCTC+AGG | - | chr3.2:85308768-85308787 | None:intergenic | 40.0% | |
| ATTGTTTGGGGGAAGAAGTT+TGG | + | chr3.2:85309945-85309964 | MS.gene015099:CDS | 40.0% | |
| CATATGTTTCAAGCTGAGAC+AGG | - | chr3.2:85308851-85308870 | None:intergenic | 40.0% | |
| CATGCTAAAGCTGTTTGTTC+AGG | + | chr3.2:85308645-85308664 | MS.gene015099:CDS | 40.0% | |
| CTCTTGAGCTTGAGAATTTG+GGG | + | chr3.2:85309888-85309907 | MS.gene015099:CDS | 40.0% | |
| GAAGAAGCTCATAAGCTTCT+TGG | - | chr3.2:85308200-85308219 | None:intergenic | 40.0% | |
| GACACAGAGTGGTTTGAATT+TGG | - | chr3.2:85308235-85308254 | None:intergenic | 40.0% | |
| GATATTCTTTGACACCTACG+GGG | + | chr3.2:85309733-85309752 | MS.gene015099:CDS | 40.0% | |
| GGATATTCTTTGACACCTAC+GGG | + | chr3.2:85309732-85309751 | MS.gene015099:CDS | 40.0% | |
| GGGATATTCTTTGACACCTA+CGG | + | chr3.2:85309731-85309750 | MS.gene015099:intron | 40.0% | |
| GGTGGTCATGTACTCAATAT+TGG | + | chr3.2:85308669-85308688 | MS.gene015099:CDS | 40.0% | |
| TATGAGCTTCTTCTCAATGC+TGG | + | chr3.2:85308207-85308226 | MS.gene015099:CDS | 40.0% | |
| TCAACAATACAGGGAGATGT+TGG | - | chr3.2:85309787-85309806 | None:intergenic | 40.0% | |
| TCTTTCTTCAATGGCCTTTG+TGG | + | chr3.2:85309824-85309843 | MS.gene015099:CDS | 40.0% | |
| TGAGAGTAAAGCTGTGATGA+TGG | + | chr3.2:85308596-85308615 | MS.gene015099:CDS | 40.0% | |
| TGCCTGTTAAGGATTGTTTG+GGG | + | chr3.2:85309933-85309952 | MS.gene015099:CDS | 40.0% | |
| TGTGTGACTTAAGAATTGCC+TGG | - | chr3.2:85309503-85309522 | None:intergenic | 40.0% | |
| TTATGAACGTATGCTTCGCA+CGG | + | chr3.2:85308773-85308792 | MS.gene015099:CDS | 40.0% | |
| TTCTTGCATTGCGAAATCAC+CGG | - | chr3.2:85308172-85308191 | None:intergenic | 40.0% | |
| TTGTTTGGGGGAAGAAGTTT+GGG | + | chr3.2:85309946-85309965 | MS.gene015099:CDS | 40.0% | |
| ! | AAGGTGTCAAACACAGATAC+TGG | + | chr3.2:85309969-85309988 | MS.gene015099:CDS | 40.0% |
| ! | ATGCCTTCCATTAGAAGTGT+CGG | + | chr3.2:85308392-85308411 | MS.gene015099:intron | 40.0% |
| ! | TAGTGTTGGGAACAATTGCT+AGG | + | chr3.2:85308493-85308512 | MS.gene015099:CDS | 40.0% |
| !! | AATAGCACCGACACTTCTAA+TGG | - | chr3.2:85308402-85308421 | None:intergenic | 40.0% |
| !! | TAAAGCTGTGATGATGGCAT+GGG | + | chr3.2:85308602-85308621 | MS.gene015099:CDS | 40.0% |
| AAAGCTGTTTGTTCAGGAGG+TGG | + | chr3.2:85308651-85308670 | MS.gene015099:CDS | 45.0% | |
| ACAATACAGGGAGATGTTGG+TGG | - | chr3.2:85309784-85309803 | None:intergenic | 45.0% | |
| CAAGCTCAAGAGATACCAAG+TGG | - | chr3.2:85309880-85309899 | None:intergenic | 45.0% | |
| CATCTGCAGACTGACAAACA+GGG | - | chr3.2:85310015-85310034 | None:intergenic | 45.0% | |
| CCAAGTGGCAGTAAACAACA+TGG | - | chr3.2:85309865-85309884 | None:intergenic | 45.0% | |
| GAAGGAAGAAGAACTATGCG+AGG | + | chr3.2:85307960-85307979 | MS.gene015099:CDS | 45.0% | |
| GATTAAAGGTGAGACGGAGA+AGG | + | chr3.2:85307987-85308006 | MS.gene015099:CDS | 45.0% | |
| GCCTCTAAACTCTTTGACGT+GGG | + | chr3.2:85309683-85309702 | MS.gene015099:intron | 45.0% | |
| GCCTGTTAAGGATTGTTTGG+GGG | + | chr3.2:85309934-85309953 | MS.gene015099:CDS | 45.0% | |
| GCTAAAGCTGTTTGTTCAGG+AGG | + | chr3.2:85308648-85308667 | MS.gene015099:CDS | 45.0% | |
| GGTGATTTCGCAATGCAAGA+AGG | + | chr3.2:85308171-85308190 | MS.gene015099:CDS | 45.0% | |
| GTTAGTGTCAGTTTCGTGTC+AGG | - | chr3.2:85308273-85308292 | None:intergenic | 45.0% | |
| GTTGGGAACAATTGCTAGGA+AGG | + | chr3.2:85308497-85308516 | MS.gene015099:CDS | 45.0% | |
| TATGAACGTATGCTTCGCAC+GGG | + | chr3.2:85308774-85308793 | MS.gene015099:CDS | 45.0% | |
| TCATCTGCAGACTGACAAAC+AGG | - | chr3.2:85310016-85310035 | None:intergenic | 45.0% | |
| TCCCCCAAACAATCCTTAAC+AGG | - | chr3.2:85309938-85309957 | None:intergenic | 45.0% | |
| TCTCCCTGTATTGTTGAAGC+CGG | + | chr3.2:85309790-85309809 | MS.gene015099:CDS | 45.0% | |
| TGACACTAACACGTCAACAC+CGG | + | chr3.2:85308283-85308302 | MS.gene015099:intron | 45.0% | |
| TGCCTCTAAACTCTTTGACG+TGG | + | chr3.2:85309682-85309701 | MS.gene015099:intron | 45.0% | |
| TTAGCATGAGCCTCCATCAA+TGG | - | chr3.2:85308633-85308652 | None:intergenic | 45.0% | |
| TTCTTCAATGGCCTTTGTGG+TGG | + | chr3.2:85309827-85309846 | MS.gene015099:CDS | 45.0% | |
| ! | CCATGTTGTTTACTGCCACT+TGG | + | chr3.2:85309862-85309881 | MS.gene015099:CDS | 45.0% |
| !! | GTAAAGCTGTGATGATGGCA+TGG | + | chr3.2:85308601-85308620 | MS.gene015099:CDS | 45.0% |
| !! | TGCATTCCTGGAAAGCATCT+GGG | - | chr3.2:85309585-85309604 | None:intergenic | 45.0% |
| !! | TTGCATTCCTGGAAAGCATC+TGG | - | chr3.2:85309586-85309605 | None:intergenic | 45.0% |
| ATGGGAGAAGCCATTGATGG+AGG | + | chr3.2:85308620-85308639 | MS.gene015099:CDS | 50.0% | |
| CACCCGGCTTCAACAATACA+GGG | - | chr3.2:85309796-85309815 | None:intergenic | 50.0% | |
| CATTGTTGAGGCTCATCCTG+AGG | + | chr3.2:85308749-85308768 | MS.gene015099:CDS | 50.0% | |
| CTCAGGATGAGCCTCAACAA+TGG | - | chr3.2:85308751-85308770 | None:intergenic | 50.0% | |
| CTCCCTGTATTGTTGAAGCC+GGG | + | chr3.2:85309791-85309810 | MS.gene015099:CDS | 50.0% | |
| CTGTTTCCCAGATGCTTTCC+AGG | + | chr3.2:85309576-85309595 | MS.gene015099:intron | 50.0% | |
| GAAATGAGTAACGTCGGCAC+CGG | - | chr3.2:85308031-85308050 | None:intergenic | 50.0% | |
| GAGAGAAGGATGTCGAGGAT+GGG | - | chr3.2:85308105-85308124 | None:intergenic | 50.0% | |
| GCCCACGTCAAAGAGTTTAG+AGG | - | chr3.2:85309687-85309706 | None:intergenic | 50.0% | |
| GCCGACGTTACTCATTTCGA+CGG | + | chr3.2:85308033-85308052 | MS.gene015099:CDS | 50.0% | |
| GCCGTCGAAATGAGTAACGT+CGG | - | chr3.2:85308037-85308056 | None:intergenic | 50.0% | |
| GGAAGAAGAACTATGCGAGG+CGG | + | chr3.2:85307963-85307982 | MS.gene015099:CDS | 50.0% | |
| GTTACTCATTTCGACGGCGA+TGG | + | chr3.2:85308039-85308058 | MS.gene015099:CDS | 50.0% | |
| TTGCATTGCGAAATCACCGG+CGG | - | chr3.2:85308169-85308188 | None:intergenic | 50.0% | |
| TTGGGGGAAGAAGTTTGGGA+AGG | + | chr3.2:85309950-85309969 | MS.gene015099:CDS | 50.0% | |
| ! | GCACCGACACTTCTAATGGA+AGG | - | chr3.2:85308398-85308417 | None:intergenic | 50.0% |
| !! | GAAGGAGAAAGAGCGTTCCA+AGG | - | chr3.2:85308138-85308157 | None:intergenic | 50.0% |
| AACGTATGCTTCGCACGGGT+TGG | + | chr3.2:85308778-85308797 | MS.gene015099:CDS | 55.0% | |
| ACGTATGCTTCGCACGGGTT+GGG | + | chr3.2:85308779-85308798 | MS.gene015099:CDS | 55.0% | |
| CCACCCGGCTTCAACAATAC+AGG | - | chr3.2:85309797-85309816 | None:intergenic | 55.0% | |
| CCTGTATTGTTGAAGCCGGG+TGG | + | chr3.2:85309794-85309813 | MS.gene015099:CDS | 55.0% | |
| CTATGCGAGGCGGCGATTAA+AGG | + | chr3.2:85307973-85307992 | MS.gene015099:CDS | 55.0% | |
| CTGCAGACTGACAAACAGGG+AGG | - | chr3.2:85310012-85310031 | None:intergenic | 55.0% | |
| CTTATGCTCGCCGCAAAGCA+CGG | + | chr3.2:85308072-85308091 | MS.gene015099:CDS | 55.0% | |
| GAAATCACCGGCGGAAAGGT+TGG | - | chr3.2:85308160-85308179 | None:intergenic | 55.0% | |
| GGAGAGAAGGATGTCGAGGA+TGG | - | chr3.2:85308106-85308125 | None:intergenic | 55.0% | |
| GGCATGGGAGAAGCCATTGA+TGG | + | chr3.2:85308617-85308636 | MS.gene015099:CDS | 55.0% | |
| GGCGGCGATTAAAGGTGAGA+CGG | + | chr3.2:85307981-85308000 | MS.gene015099:CDS | 55.0% | |
| GTCGTCATAGTACTCCCCGT+AGG | - | chr3.2:85309750-85309769 | None:intergenic | 55.0% | |
| TCTCCTTCCAACCTTTCCGC+CGG | + | chr3.2:85308150-85308169 | MS.gene015099:CDS | 55.0% | |
| TGCTTTGCGGCGAGCATAAG+AGG | - | chr3.2:85308072-85308091 | None:intergenic | 55.0% | |
| TTGCGAAATCACCGGCGGAA+AGG | - | chr3.2:85308164-85308183 | None:intergenic | 55.0% | |
| !! | AAGAGCGTTCCAAGGAGCAC+CGG | - | chr3.2:85308130-85308149 | None:intergenic | 55.0% |
| CTCGACATCCTTCTCTCCGC+CGG | + | chr3.2:85308108-85308127 | MS.gene015099:CDS | 60.0% | |
| GGATGTCGAGGATGGGTGCA+TGG | - | chr3.2:85308098-85308117 | None:intergenic | 60.0% | |
| TCACCGGCGGAAAGGTTGGA+AGG | - | chr3.2:85308156-85308175 | None:intergenic | 60.0% | |
| ! | CGTATGCTTCGCACGGGTTG+GGG | + | chr3.2:85308780-85308799 | MS.gene015099:CDS | 60.0% |
| CGGCGGAGAGAAGGATGTCG+AGG | - | chr3.2:85308110-85308129 | None:intergenic | 65.0% | |
| GGGTGCATGGCCGTGCTTTG+CGG | - | chr3.2:85308085-85308104 | None:intergenic | 65.0% | |
| TTCTCTCCGCCGGTGCTCCT+TGG | + | chr3.2:85308118-85308137 | MS.gene015099:CDS | 65.0% | |
| !! | AAGGAGCACCGGCGGAGAGA+AGG | - | chr3.2:85308119-85308138 | None:intergenic | 65.0% |
| !! | AGCGTTCCAAGGAGCACCGG+CGG | - | chr3.2:85308127-85308146 | None:intergenic | 65.0% |
| !! | TCGCACGGGTTGGGGTGAGA+AGG | + | chr3.2:85308788-85308807 | MS.gene015099:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 85307958 | 85310045 | 85307958 | ID=MS.gene015099 |
| chr3.2 | mRNA | 85307958 | 85310045 | 85307958 | ID=MS.gene015099.t1;Parent=MS.gene015099 |
| chr3.2 | exon | 85307958 | 85308228 | 85307958 | ID=MS.gene015099.t1.exon1;Parent=MS.gene015099.t1 |
| chr3.2 | CDS | 85307958 | 85308228 | 85307958 | ID=cds.MS.gene015099.t1;Parent=MS.gene015099.t1 |
| chr3.2 | exon | 85308478 | 85308873 | 85308478 | ID=MS.gene015099.t1.exon2;Parent=MS.gene015099.t1 |
| chr3.2 | CDS | 85308478 | 85308873 | 85308478 | ID=cds.MS.gene015099.t1;Parent=MS.gene015099.t1 |
| chr3.2 | exon | 85309732 | 85310045 | 85309732 | ID=MS.gene015099.t1.exon3;Parent=MS.gene015099.t1 |
| chr3.2 | CDS | 85309732 | 85310045 | 85309732 | ID=cds.MS.gene015099.t1;Parent=MS.gene015099.t1 |
| Gene Sequence |
| Protein sequence |
