Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015110.t1 | XP_024634816.1 | 77.8 | 558 | 68 | 4 | 1 | 504 | 1 | 556 | 4.70E-204 | 720.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015110.t1 | Q9LVC3 | 31.4 | 388 | 248 | 6 | 112 | 498 | 225 | 595 | 2.8e-48 | 194.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015110.t1 | A0A396IYZ7 | 76.1 | 539 | 92 | 3 | 1 | 504 | 1 | 537 | 7.4e-175 | 623.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene60129 | MS.gene015110 | PPI |
| MS.gene016597 | MS.gene015110 | PPI |
| MS.gene056242 | MS.gene015110 | PPI |
| MS.gene88489 | MS.gene015110 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015110.t1 | MTR_3g102650 | 89.831 | 531 | 17 | 3 | 1 | 496 | 1 | 529 | 0.0 | 914 |
| MS.gene015110.t1 | MTR_2g008770 | 37.778 | 315 | 194 | 1 | 178 | 492 | 426 | 738 | 5.10e-67 | 229 |
| MS.gene015110.t1 | MTR_5g063650 | 35.549 | 346 | 217 | 5 | 150 | 494 | 367 | 707 | 1.61e-61 | 214 |
| MS.gene015110.t1 | MTR_1g106975 | 29.204 | 339 | 232 | 3 | 158 | 492 | 113 | 447 | 2.43e-44 | 162 |
| MS.gene015110.t1 | MTR_2g006930 | 30.938 | 320 | 211 | 5 | 179 | 492 | 105 | 420 | 7.32e-44 | 160 |
| MS.gene015110.t1 | MTR_1g100230 | 29.245 | 318 | 218 | 4 | 179 | 492 | 90 | 404 | 2.33e-41 | 153 |
| MS.gene015110.t1 | MTR_1g051630 | 98.438 | 64 | 1 | 0 | 258 | 321 | 38 | 101 | 5.43e-38 | 135 |
| MS.gene015110.t1 | MTR_5g062070 | 29.644 | 253 | 177 | 1 | 212 | 464 | 22 | 273 | 6.92e-34 | 131 |
| MS.gene015110.t1 | MTR_2g036900 | 27.077 | 325 | 218 | 7 | 181 | 496 | 659 | 973 | 5.26e-32 | 131 |
| MS.gene015110.t1 | MTR_2g006940 | 26.978 | 278 | 189 | 3 | 179 | 453 | 112 | 378 | 1.02e-29 | 120 |
| MS.gene015110.t1 | MTR_4g064670 | 24.706 | 425 | 266 | 12 | 99 | 482 | 535 | 946 | 3.10e-29 | 122 |
| MS.gene015110.t1 | MTR_4g064670 | 24.706 | 425 | 266 | 12 | 99 | 482 | 606 | 1017 | 3.22e-29 | 122 |
| MS.gene015110.t1 | MTR_1g094630 | 28.369 | 282 | 191 | 5 | 183 | 458 | 647 | 923 | 4.78e-29 | 122 |
| MS.gene015110.t1 | MTR_2g036900 | 29.183 | 257 | 177 | 3 | 181 | 436 | 659 | 911 | 1.74e-28 | 120 |
| MS.gene015110.t1 | MTR_2g097670 | 25.450 | 389 | 239 | 10 | 99 | 458 | 627 | 993 | 1.20e-27 | 117 |
| MS.gene015110.t1 | MTR_5g080390 | 25.515 | 388 | 247 | 12 | 97 | 458 | 582 | 953 | 1.07e-26 | 115 |
| MS.gene015110.t1 | MTR_1g094630 | 28.000 | 200 | 139 | 3 | 183 | 381 | 647 | 842 | 8.42e-19 | 90.5 |
| MS.gene015110.t1 | MTR_2g097670 | 24.756 | 307 | 186 | 8 | 99 | 381 | 627 | 912 | 1.16e-18 | 90.1 |
| MS.gene015110.t1 | MTR_2g055280 | 76.744 | 43 | 10 | 0 | 243 | 285 | 31 | 73 | 4.16e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015110.t1 | AT5G56510 | 34.794 | 388 | 235 | 7 | 112 | 498 | 225 | 595 | 2.73e-64 | 219 |
| MS.gene015110.t1 | AT5G56510 | 34.794 | 388 | 235 | 7 | 112 | 498 | 225 | 595 | 2.73e-64 | 219 |
| MS.gene015110.t1 | AT5G56510 | 34.794 | 388 | 235 | 7 | 112 | 498 | 225 | 595 | 2.73e-64 | 219 |
| MS.gene015110.t1 | AT5G56510 | 34.794 | 388 | 235 | 7 | 112 | 498 | 225 | 595 | 2.73e-64 | 219 |
| MS.gene015110.t1 | AT5G56510 | 34.794 | 388 | 235 | 7 | 112 | 498 | 225 | 595 | 2.73e-64 | 219 |
| MS.gene015110.t1 | AT1G22240 | 35.962 | 317 | 199 | 3 | 178 | 494 | 198 | 510 | 1.52e-62 | 213 |
| MS.gene015110.t1 | AT5G56510 | 35.227 | 352 | 212 | 6 | 112 | 462 | 225 | 561 | 1.45e-59 | 206 |
| MS.gene015110.t1 | AT1G78160 | 34.700 | 317 | 203 | 3 | 178 | 494 | 335 | 647 | 5.66e-59 | 206 |
| MS.gene015110.t1 | AT1G78160 | 34.700 | 317 | 203 | 3 | 178 | 494 | 333 | 645 | 5.71e-59 | 206 |
| MS.gene015110.t1 | AT4G08840 | 37.580 | 314 | 190 | 4 | 181 | 494 | 244 | 551 | 5.72e-59 | 204 |
| MS.gene015110.t1 | AT5G43090 | 33.750 | 320 | 202 | 5 | 180 | 494 | 210 | 524 | 4.41e-52 | 185 |
| MS.gene015110.t1 | AT1G35730 | 35.664 | 286 | 181 | 2 | 178 | 463 | 249 | 531 | 8.53e-52 | 185 |
| MS.gene015110.t1 | AT1G35730 | 35.664 | 286 | 181 | 2 | 178 | 463 | 255 | 537 | 9.24e-52 | 185 |
| MS.gene015110.t1 | AT4G08560 | 36.458 | 288 | 170 | 3 | 180 | 457 | 152 | 436 | 1.97e-49 | 177 |
| MS.gene015110.t1 | AT1G35750 | 33.438 | 317 | 205 | 4 | 178 | 494 | 213 | 523 | 1.87e-46 | 169 |
| MS.gene015110.t1 | AT5G43110 | 33.333 | 324 | 205 | 6 | 176 | 494 | 198 | 515 | 1.29e-43 | 162 |
| MS.gene015110.t1 | AT3G20250 | 25.424 | 472 | 315 | 13 | 46 | 496 | 442 | 897 | 4.39e-32 | 131 |
| MS.gene015110.t1 | AT3G20250 | 25.636 | 472 | 314 | 13 | 46 | 496 | 478 | 933 | 6.11e-32 | 130 |
| MS.gene015110.t1 | AT3G20250 | 25.636 | 472 | 314 | 13 | 46 | 496 | 478 | 933 | 6.11e-32 | 130 |
| MS.gene015110.t1 | AT4G25880 | 27.439 | 328 | 223 | 8 | 176 | 496 | 530 | 849 | 2.01e-31 | 129 |
| MS.gene015110.t1 | AT4G25880 | 27.439 | 328 | 223 | 8 | 176 | 496 | 530 | 849 | 2.08e-31 | 129 |
| MS.gene015110.t1 | AT4G25880 | 27.439 | 328 | 223 | 8 | 176 | 496 | 530 | 849 | 2.08e-31 | 129 |
| MS.gene015110.t1 | AT3G10360 | 29.066 | 289 | 194 | 5 | 176 | 458 | 662 | 945 | 2.06e-30 | 126 |
| MS.gene015110.t1 | AT4G25880 | 27.439 | 328 | 219 | 9 | 180 | 496 | 524 | 843 | 3.28e-28 | 119 |
| MS.gene015110.t1 | AT4G25880 | 27.439 | 328 | 219 | 9 | 180 | 496 | 524 | 843 | 3.29e-28 | 119 |
| MS.gene015110.t1 | AT2G29200 | 25.225 | 333 | 216 | 6 | 178 | 482 | 630 | 957 | 6.35e-26 | 112 |
| MS.gene015110.t1 | AT2G29200 | 25.225 | 333 | 216 | 6 | 178 | 482 | 630 | 957 | 6.35e-26 | 112 |
| MS.gene015110.t1 | AT2G29190 | 25.826 | 333 | 214 | 6 | 178 | 482 | 634 | 961 | 1.16e-25 | 111 |
| MS.gene015110.t1 | AT2G29190 | 25.826 | 333 | 214 | 6 | 178 | 482 | 634 | 961 | 1.16e-25 | 111 |
| MS.gene015110.t1 | AT2G29140 | 24.478 | 335 | 220 | 6 | 176 | 482 | 624 | 953 | 9.85e-24 | 105 |
| MS.gene015110.t1 | AT2G29140 | 24.478 | 335 | 220 | 6 | 176 | 482 | 624 | 953 | 9.85e-24 | 105 |
| MS.gene015110.t1 | AT5G09610 | 25.339 | 221 | 157 | 4 | 258 | 476 | 263 | 477 | 2.34e-16 | 82.0 |
| MS.gene015110.t1 | AT5G60180 | 25.714 | 245 | 179 | 2 | 222 | 465 | 48 | 290 | 8.13e-15 | 75.9 |
| MS.gene015110.t1 | AT5G60110 | 25.714 | 245 | 179 | 2 | 222 | 465 | 48 | 290 | 2.54e-14 | 74.3 |
| MS.gene015110.t1 | AT5G59280 | 27.358 | 212 | 148 | 4 | 250 | 458 | 79 | 287 | 4.61e-14 | 73.9 |
| MS.gene015110.t1 | AT1G21620 | 26.087 | 230 | 135 | 5 | 233 | 459 | 69 | 266 | 9.35e-14 | 72.4 |
| MS.gene015110.t1 | AT1G35850 | 27.830 | 212 | 147 | 4 | 250 | 458 | 4 | 212 | 2.28e-13 | 70.5 |
| MS.gene015110.t1 | AT1G35850 | 30.968 | 155 | 103 | 3 | 307 | 458 | 106 | 259 | 7.33e-12 | 66.6 |
Find 111 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGCATTGAATAAATTTA+AGG | 0.145874 | 3.2:+85249371 | MS.gene015110:CDS |
| GCAAGAAGTGATGGCAAATT+TGG | 0.156557 | 3.2:+85247813 | MS.gene015110:CDS |
| CCTTATTATAACTATAACTA+TGG | 0.167753 | 3.2:+85247409 | MS.gene015110:CDS |
| TATTGTTATTGTTCTGGTTT+TGG | 0.205325 | 3.2:-85247216 | None:intergenic |
| GTTAATGTTAATAATGTTAA+TGG | 0.214484 | 3.2:+85247712 | MS.gene015110:CDS |
| CAAGAAGTGATGGCAAATTT+GGG | 0.276799 | 3.2:+85247814 | MS.gene015110:CDS |
| TATGGATATTGTTATTGTTC+TGG | 0.291298 | 3.2:-85247222 | None:intergenic |
| CCGAAAGATTGATTAGGATT+AGG | 0.291834 | 3.2:-85247325 | None:intergenic |
| TAGCAATATGTTTGGCAAAA+AGG | 0.298521 | 3.2:+85249977 | MS.gene015110:CDS |
| CCATAGTTATAGTTATAATA+AGG | 0.308433 | 3.2:-85247409 | None:intergenic |
| CCTAATCAATCTTTCGGTTA+TGG | 0.311110 | 3.2:+85247331 | MS.gene015110:CDS |
| GCTTGTTCTAGGGTTTGATT+AGG | 0.312082 | 3.2:-85247277 | None:intergenic |
| TCTCTTTCCTGCAATAAATA+TGG | 0.314796 | 3.2:+85249219 | MS.gene015110:CDS |
| TTTGAGCCATGAAAGGGTTT+TGG | 0.330120 | 3.2:-85247246 | None:intergenic |
| ATTACTGCCATATTTATTGC+AGG | 0.345089 | 3.2:-85249226 | None:intergenic |
| AGGCTCCTTACGGATCCTTA+TGG | 0.349807 | 3.2:+85249333 | MS.gene015110:CDS |
| AATAATAATAACTTAGCTTA+TGG | 0.353348 | 3.2:+85247481 | MS.gene015110:CDS |
| AAGTTATTATTATTCCTAAC+AGG | 0.357786 | 3.2:-85247472 | None:intergenic |
| CTAACAGGTGTATTGAAATC+AGG | 0.360201 | 3.2:-85247457 | None:intergenic |
| CCTAATCCTAATCAATCTTT+CGG | 0.366022 | 3.2:+85247325 | MS.gene015110:CDS |
| GTAAGGAGCCTTGTTACATT+AGG | 0.367914 | 3.2:-85249321 | None:intergenic |
| TGGAGCTATTGTATTGTCTA+AGG | 0.373255 | 3.2:+85248217 | MS.gene015110:CDS |
| AGAATTTGCCTTAGTCTTCA+TGG | 0.374945 | 3.2:+85248003 | MS.gene015110:CDS |
| GTATTGTCTAAGGATATTAA+TGG | 0.390496 | 3.2:+85248227 | MS.gene015110:CDS |
| TAATCACATGTGTGAGTTGA+TGG | 0.391134 | 3.2:+85247873 | MS.gene015110:CDS |
| CTTATGATGTAAATCAGATT+AGG | 0.392575 | 3.2:+85247545 | MS.gene015110:CDS |
| CCATAACCAAAACCCTTTCA+TGG | 0.399823 | 3.2:+85247240 | MS.gene015110:CDS |
| CTGATTTCAATACACCTGTT+AGG | 0.405041 | 3.2:+85247458 | MS.gene015110:CDS |
| TAAGAATGCCTTGGAGGAAC+TGG | 0.415665 | 3.2:+85249929 | MS.gene015110:CDS |
| AATTAGACCTCTTTGCTCTC+TGG | 0.422483 | 3.2:-85248177 | None:intergenic |
| TATTAGCTGAAGATTGTTAC+GGG | 0.425499 | 3.2:+85249021 | MS.gene015110:CDS |
| CCATAACCGAAAGATTGATT+AGG | 0.431264 | 3.2:-85247331 | None:intergenic |
| GGTTGATCCTATTGGTTATG+AGG | 0.433190 | 3.2:+85247894 | MS.gene015110:CDS |
| CTATTAGCTGAAGATTGTTA+CGG | 0.439528 | 3.2:+85249020 | MS.gene015110:CDS |
| CTGAAAATACCAACAGTCTC+AGG | 0.440858 | 3.2:+85249162 | MS.gene015110:CDS |
| GTAATAACCTCATAACCAAT+AGG | 0.443299 | 3.2:-85247901 | None:intergenic |
| AAAGGTGCTTGATAAGTATG+AGG | 0.451082 | 3.2:+85249995 | MS.gene015110:CDS |
| CTTGTTCTAGGGTTTGATTA+GGG | 0.459212 | 3.2:-85247276 | None:intergenic |
| ATGAATCCTCTGTGCCAACT+TGG | 0.471920 | 3.2:+85247677 | MS.gene015110:CDS |
| CACTGTGATCGAGGTGATAA+CGG | 0.474336 | 3.2:-85247169 | None:intergenic |
| TAGCAATTCTATAATGATGC+AGG | 0.476010 | 3.2:-85249292 | None:intergenic |
| ATTATGTCAGCTTTGACCCC+TGG | 0.477722 | 3.2:+85248197 | MS.gene015110:CDS |
| TGGCAAATTTGGGGCCTGAA+GGG | 0.481344 | 3.2:+85247824 | MS.gene015110:CDS |
| ATGATGCGTAGCAATATGTT+TGG | 0.481616 | 3.2:+85249969 | MS.gene015110:CDS |
| AAAGACTCAGATTGTTCTGT+TGG | 0.482072 | 3.2:+85247954 | MS.gene015110:CDS |
| TTATGAGGTTATTACAAAGA+TGG | 0.482412 | 3.2:+85247909 | MS.gene015110:CDS |
| TAACAATCTTCAGCTAATAG+TGG | 0.485810 | 3.2:-85249017 | None:intergenic |
| TTAGCTTATGGTAGAGGTAG+AGG | 0.486983 | 3.2:+85247493 | MS.gene015110:CDS |
| GAATTTGCCTTAGTCTTCAT+GGG | 0.497383 | 3.2:+85248004 | MS.gene015110:CDS |
| TTAGACAATACAATAGCTCC+AGG | 0.504045 | 3.2:-85248215 | None:intergenic |
| GGCAAATTTGGGGCCTGAAG+GGG | 0.504390 | 3.2:+85247825 | MS.gene015110:CDS |
| CTTAATGATTATGATTACTC+TGG | 0.507034 | 3.2:+85247367 | MS.gene015110:CDS |
| TAATGTAACAAGGCTCCTTA+CGG | 0.508224 | 3.2:+85249323 | MS.gene015110:CDS |
| CCTAACGATTCTGTCGATAA+CGG | 0.508868 | 3.2:+85247139 | MS.gene015110:CDS |
| ATTCATTAAGAATGCCTTGG+AGG | 0.509107 | 3.2:+85249923 | MS.gene015110:CDS |
| CATTGGTTTGATGAATTTCG+TGG | 0.510977 | 3.2:+85247745 | MS.gene015110:CDS |
| ATACAAATTGCTGCTGAAGC+TGG | 0.513224 | 3.2:-85249197 | None:intergenic |
| AATAACTTAGCTTATGGTAG+AGG | 0.515646 | 3.2:+85247487 | MS.gene015110:CDS |
| TCGTGGGAGGGTTTATTCGT+TGG | 0.516213 | 3.2:+85247762 | MS.gene015110:CDS |
| AAATATACCCATGAAGACTA+AGG | 0.517695 | 3.2:-85248011 | None:intergenic |
| GCTGCTGAAGCTGGTGGTGT+AGG | 0.519438 | 3.2:-85249188 | None:intergenic |
| TTTCGATTTGAGCCATGAAA+GGG | 0.528174 | 3.2:-85247252 | None:intergenic |
| ATGGCAAATTTGGGGCCTGA+AGG | 0.531879 | 3.2:+85247823 | MS.gene015110:CDS |
| GTTTGATGAATTTCGTGGGA+GGG | 0.531922 | 3.2:+85247750 | MS.gene015110:CDS |
| GAGTTGATGGTTGATCCTAT+TGG | 0.533865 | 3.2:+85247886 | MS.gene015110:CDS |
| CTGATGACAAAATTTCCATA+AGG | 0.535242 | 3.2:-85249348 | None:intergenic |
| TCACTTTCAAGAGATAAGAC+TGG | 0.535453 | 3.2:+85248912 | MS.gene015110:CDS |
| CCGTTATCGACAGAATCGTT+AGG | 0.539438 | 3.2:-85247139 | None:intergenic |
| CTTATTATAACTATAACTAT+GGG | 0.545461 | 3.2:+85247410 | MS.gene015110:CDS |
| TGAATCCTCTGTGCCAACTT+GGG | 0.546933 | 3.2:+85247678 | MS.gene015110:CDS |
| TAGATTCATTAAGAATGCCT+TGG | 0.547602 | 3.2:+85249920 | MS.gene015110:CDS |
| ACAGCATCATTAACCCAAGT+TGG | 0.549023 | 3.2:-85247691 | None:intergenic |
| TCGTTCTGTTGAGAAACTGT+TGG | 0.549400 | 3.2:+85248142 | MS.gene015110:CDS |
| TGAGGTTATTACAAAGATGG+TGG | 0.551949 | 3.2:+85247912 | MS.gene015110:CDS |
| ATCGACAGAATCGTTAGGAA+TGG | 0.551977 | 3.2:-85247134 | None:intergenic |
| GATTATGATTACTCTGGTGT+TGG | 0.556049 | 3.2:+85247373 | MS.gene015110:CDS |
| TCTTAGTTGCTCCTTGAGCA+TGG | 0.557687 | 3.2:-85248962 | None:intergenic |
| TAAATATGGCAGTAATGTAG+TGG | 0.558149 | 3.2:+85249233 | MS.gene015110:CDS |
| GAATTTCGCCGCCGTCGCCG+TGG | 0.564750 | 3.2:+85247515 | MS.gene015110:CDS |
| GAACTCAACCACGGCGACGG+CGG | 0.574065 | 3.2:-85247523 | None:intergenic |
| ATTGGTTTGATGAATTTCGT+GGG | 0.575858 | 3.2:+85247746 | MS.gene015110:CDS |
| TGCTTCGACCAGTTCCTCCA+AGG | 0.576223 | 3.2:-85249937 | None:intergenic |
| TTTACCTCAGTATCAGCATG+TGG | 0.579642 | 3.2:-85248284 | None:intergenic |
| TAGACCTCTTTGCTCTCTGG+TGG | 0.585063 | 3.2:-85248174 | None:intergenic |
| TTTCCCACATGCTGATACTG+AGG | 0.590378 | 3.2:+85248280 | MS.gene015110:CDS |
| AATTTCTTGCAATAACTCCC+AGG | 0.592318 | 3.2:-85248884 | None:intergenic |
| GTATTGAAATCAGGTTGACT+AGG | 0.599712 | 3.2:-85247448 | None:intergenic |
| GAGGGTTTATTCGTTGGCGA+AGG | 0.603103 | 3.2:+85247768 | MS.gene015110:CDS |
| TAAGAACTCAACCACGGCGA+CGG | 0.604911 | 3.2:-85247526 | None:intergenic |
| GGTTTGATGAATTTCGTGGG+AGG | 0.614649 | 3.2:+85247749 | MS.gene015110:CDS |
| GGATATTAATGGTCATCGTG+TGG | 0.622294 | 3.2:+85248238 | MS.gene015110:CDS |
| AAGGTGCTTGATAAGTATGA+GGG | 0.623255 | 3.2:+85249996 | MS.gene015110:CDS |
| TGTAGGTTGCCTGAGACTGT+TGG | 0.624539 | 3.2:-85249171 | None:intergenic |
| AATTTCCATAAGGATCCGTA+AGG | 0.628856 | 3.2:-85249338 | None:intergenic |
| TATTGTGTTAGCCATGCTCA+AGG | 0.630724 | 3.2:+85248951 | MS.gene015110:CDS |
| TAGACAATACAATAGCTCCA+GGG | 0.639470 | 3.2:-85248214 | None:intergenic |
| AAGAAGTGATGGCAAATTTG+GGG | 0.640787 | 3.2:+85247815 | MS.gene015110:CDS |
| TAACTCAACCACTGTGATCG+AGG | 0.642608 | 3.2:-85247178 | None:intergenic |
| CAAATTGCTGCTGAAGCTGG+TGG | 0.647530 | 3.2:-85249194 | None:intergenic |
| TTACCTCAGTATCAGCATGT+GGG | 0.651847 | 3.2:-85248283 | None:intergenic |
| AGACAATACAATAGCTCCAG+GGG | 0.662124 | 3.2:-85248213 | None:intergenic |
| GTTCTGTTGGTCACACACCA+TGG | 0.665936 | 3.2:+85247967 | MS.gene015110:CDS |
| TAAATGATCCTAATGTAACA+AGG | 0.666099 | 3.2:+85249313 | MS.gene015110:CDS |
| GTTACCACCAGAGAGCAAAG+AGG | 0.674944 | 3.2:+85248170 | MS.gene015110:CDS |
| TCGTTGGCGAAGGATACACA+TGG | 0.676587 | 3.2:+85247778 | MS.gene015110:CDS |
| TTAATGGAATGAATGCACAT+TGG | 0.681427 | 3.2:+85247728 | MS.gene015110:CDS |
| TTCTGATAAACTGAGCACCA+TGG | 0.689610 | 3.2:-85247984 | None:intergenic |
| ATTAACCCAAGTTGGCACAG+AGG | 0.702236 | 3.2:-85247683 | None:intergenic |
| CGTTGGCGAAGGATACACAT+GGG | 0.721395 | 3.2:+85247779 | MS.gene015110:CDS |
| ACATCATAAGAACTCAACCA+CGG | 0.729474 | 3.2:-85247532 | None:intergenic |
| CGTTATCACCTCGATCACAG+TGG | 0.749783 | 3.2:+85247170 | MS.gene015110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTATTTAAATGTAATTTA+AGG | + | chr3.2:85248412-85248431 | MS.gene015110:intron | 10.0% |
| !!! | TTTTTCTTATTTAATAAACA+GGG | + | chr3.2:85249894-85249913 | MS.gene015110:intron | 10.0% |
| !! | AATAATAATAACTTAGCTTA+TGG | + | chr3.2:85247481-85247500 | MS.gene015110:CDS | 15.0% |
| !! | CTTATTATAACTATAACTAT+GGG | + | chr3.2:85247410-85247429 | MS.gene015110:CDS | 15.0% |
| !! | GTTAATGTTAATAATGTTAA+TGG | + | chr3.2:85247712-85247731 | MS.gene015110:CDS | 15.0% |
| !!! | GTTTTTCTTATTTAATAAAC+AGG | + | chr3.2:85249893-85249912 | MS.gene015110:intron | 15.0% |
| !! | AAAATCTTAGTCAATTTATG+AGG | - | chr3.2:85248443-85248462 | None:intergenic | 20.0% |
| !! | AAGTTATTATTATTCCTAAC+AGG | - | chr3.2:85247475-85247494 | None:intergenic | 20.0% |
| !! | AATAAACTGCTTAAAAATTG+AGG | - | chr3.2:85249671-85249690 | None:intergenic | 20.0% |
| !! | ATTAGGTATAATCATTTGAA+TGG | + | chr3.2:85247562-85247581 | MS.gene015110:intron | 20.0% |
| !! | CACTATTATTAGATAAATAC+CGG | + | chr3.2:85248802-85248821 | MS.gene015110:intron | 20.0% |
| !! | CCATAGTTATAGTTATAATA+AGG | - | chr3.2:85247412-85247431 | None:intergenic | 20.0% |
| !! | CCTTATTATAACTATAACTA+TGG | + | chr3.2:85247409-85247428 | MS.gene015110:CDS | 20.0% |
| !! | TAAAAAATGTGGATAAAGAA+AGG | - | chr3.2:85248673-85248692 | None:intergenic | 20.0% |
| !! | TACTGCATTGAATAAATTTA+AGG | + | chr3.2:85249371-85249390 | MS.gene015110:CDS | 20.0% |
| !! | TTAGGTATAATCATTTGAAT+GGG | + | chr3.2:85247563-85247582 | MS.gene015110:intron | 20.0% |
| !!! | AGTTAAGTAATTTTTCAAAC+CGG | - | chr3.2:85248824-85248843 | None:intergenic | 20.0% |
| !!! | ATGGCTAAATTATTTTAGAA+AGG | + | chr3.2:85249597-85249616 | MS.gene015110:intron | 20.0% |
| !!! | TAAATTGACTAAGATTTTGT+CGG | + | chr3.2:85248445-85248464 | MS.gene015110:intron | 20.0% |
| !!! | TAGATTGTTTTGTTTGTAAA+AGG | - | chr3.2:85248397-85248416 | None:intergenic | 20.0% |
| !!! | TATCACTCAATTTTCTAATT+CGG | + | chr3.2:85249440-85249459 | MS.gene015110:intron | 20.0% |
| !!! | TATGGTAATGATATGTTTTA+TGG | + | chr3.2:85247613-85247632 | MS.gene015110:intron | 20.0% |
| !!! | TTCATTTACTCTAAAAAATG+TGG | - | chr3.2:85248684-85248703 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTTCTTCTTTAGA+TGG | + | chr3.2:85249578-85249597 | MS.gene015110:intron | 20.0% |
| !!! | TTTTTAGAGTAAATGAATAG+CGG | + | chr3.2:85248687-85248706 | MS.gene015110:intron | 20.0% |
| ! | ACAATGAAGATTAGTAAAGT+TGG | - | chr3.2:85249092-85249111 | None:intergenic | 25.0% |
| ! | ATAAGTATGAGGGTAAAAAT+CGG | + | chr3.2:85250006-85250025 | MS.gene015110:CDS | 25.0% |
| ! | ATTAGTAAAGTTGGCTATAT+TGG | - | chr3.2:85249083-85249102 | None:intergenic | 25.0% |
| ! | CGGTATTTATCTAATAATAG+TGG | - | chr3.2:85248804-85248823 | None:intergenic | 25.0% |
| ! | CTTAATGATTATGATTACTC+TGG | + | chr3.2:85247367-85247386 | MS.gene015110:CDS | 25.0% |
| ! | CTTATGATGTAAATCAGATT+AGG | + | chr3.2:85247545-85247564 | MS.gene015110:CDS | 25.0% |
| ! | GAAAAACAAAGTTATCACAA+CGG | - | chr3.2:85249880-85249899 | None:intergenic | 25.0% |
| ! | GTATTGTCTAAGGATATTAA+TGG | + | chr3.2:85248227-85248246 | MS.gene015110:CDS | 25.0% |
| ! | TAAATGATCCTAATGTAACA+AGG | + | chr3.2:85249313-85249332 | MS.gene015110:CDS | 25.0% |
| ! | TAGGTATAATCATTTGAATG+GGG | + | chr3.2:85247564-85247583 | MS.gene015110:intron | 25.0% |
| ! | TTATGAGGTTATTACAAAGA+TGG | + | chr3.2:85247909-85247928 | MS.gene015110:CDS | 25.0% |
| ! | TTCAGTTTATGTTCTGATTA+TGG | + | chr3.2:85248843-85248862 | MS.gene015110:intron | 25.0% |
| !! | AAATTGACTAAGATTTTGTC+GGG | + | chr3.2:85248446-85248465 | MS.gene015110:intron | 25.0% |
| !! | AATTTTCTAATTCGGTATCT+TGG | + | chr3.2:85249448-85249467 | MS.gene015110:intron | 25.0% |
| !! | GAAATTTTCAATGTGCTTTA+AGG | + | chr3.2:85247653-85247672 | MS.gene015110:intron | 25.0% |
| !! | TATGGATATTGTTATTGTTC+TGG | - | chr3.2:85247225-85247244 | None:intergenic | 25.0% |
| !! | TCTTTGTTTCTTGTTTCTTA+AGG | + | chr3.2:85248041-85248060 | MS.gene015110:intron | 25.0% |
| !! | TTAATTTTCATAGTGTAGCA+TGG | - | chr3.2:85248608-85248627 | None:intergenic | 25.0% |
| !! | TTTAAGCAGTTTATTTGTTG+TGG | + | chr3.2:85249676-85249695 | MS.gene015110:intron | 25.0% |
| !!! | AAGTTCTAAAGAAAGGAAAA+AGG | + | chr3.2:85248774-85248793 | MS.gene015110:intron | 25.0% |
| !!! | ATTGTTATTGTTCTGGTTTT+GGG | - | chr3.2:85247218-85247237 | None:intergenic | 25.0% |
| !!! | ATTTTAGAAAGGCTTAAAGT+TGG | + | chr3.2:85249608-85249627 | MS.gene015110:intron | 25.0% |
| !!! | TATTGTTATTGTTCTGGTTT+TGG | - | chr3.2:85247219-85247238 | None:intergenic | 25.0% |
| !!! | TTTTCCTTTCTTTAGAACTT+AGG | - | chr3.2:85248774-85248793 | None:intergenic | 25.0% |
| AAATATACCCATGAAGACTA+AGG | - | chr3.2:85248014-85248033 | None:intergenic | 30.0% | |
| AATAACTTAGCTTATGGTAG+AGG | + | chr3.2:85247487-85247506 | MS.gene015110:CDS | 30.0% | |
| AGGTATAATCATTTGAATGG+GGG | + | chr3.2:85247565-85247584 | MS.gene015110:intron | 30.0% | |
| ATTACTGCCATATTTATTGC+AGG | - | chr3.2:85249229-85249248 | None:intergenic | 30.0% | |
| CCTAATCCTAATCAATCTTT+CGG | + | chr3.2:85247325-85247344 | MS.gene015110:CDS | 30.0% | |
| CTATTAGCTGAAGATTGTTA+CGG | + | chr3.2:85249020-85249039 | MS.gene015110:CDS | 30.0% | |
| CTGATGACAAAATTTCCATA+AGG | - | chr3.2:85249351-85249370 | None:intergenic | 30.0% | |
| CTTAGTCAATTTATGAGGAA+CGG | - | chr3.2:85248438-85248457 | None:intergenic | 30.0% | |
| GTAATAACCTCATAACCAAT+AGG | - | chr3.2:85247904-85247923 | None:intergenic | 30.0% | |
| TAAATATGGCAGTAATGTAG+TGG | + | chr3.2:85249233-85249252 | MS.gene015110:CDS | 30.0% | |
| TAACAATCTTCAGCTAATAG+TGG | - | chr3.2:85249020-85249039 | None:intergenic | 30.0% | |
| TAGATTCATTAAGAATGCCT+TGG | + | chr3.2:85249920-85249939 | MS.gene015110:CDS | 30.0% | |
| TAGCAATATGTTTGGCAAAA+AGG | + | chr3.2:85249977-85249996 | MS.gene015110:CDS | 30.0% | |
| TAGCAATTCTATAATGATGC+AGG | - | chr3.2:85249295-85249314 | None:intergenic | 30.0% | |
| TATTAGCTGAAGATTGTTAC+GGG | + | chr3.2:85249021-85249040 | MS.gene015110:CDS | 30.0% | |
| TCTCTTTCCTGCAATAAATA+TGG | + | chr3.2:85249219-85249238 | MS.gene015110:CDS | 30.0% | |
| TGAAACAAACATGTAACACA+TGG | + | chr3.2:85249720-85249739 | MS.gene015110:intron | 30.0% | |
| TTAATGGAATGAATGCACAT+TGG | + | chr3.2:85247728-85247747 | MS.gene015110:CDS | 30.0% | |
| ! | AATTGACTAAGATTTTGTCG+GGG | + | chr3.2:85248447-85248466 | MS.gene015110:intron | 30.0% |
| ! | GAAAAGTTTTTGCATGATTC+AGG | + | chr3.2:85249255-85249274 | MS.gene015110:CDS | 30.0% |
| ! | GACACTTTAAGTTCAAATTG+TGG | + | chr3.2:85248369-85248388 | MS.gene015110:intron | 30.0% |
| !! | ATTGGTTTGATGAATTTCGT+GGG | + | chr3.2:85247746-85247765 | MS.gene015110:CDS | 30.0% |
| !! | TTTGCCTAAGTTCTAAAGAA+AGG | + | chr3.2:85248767-85248786 | MS.gene015110:intron | 30.0% |
| AAACCATGCATTTCACTCTT+TGG | - | chr3.2:85249481-85249500 | None:intergenic | 35.0% | |
| AAAGACTCAGATTGTTCTGT+TGG | + | chr3.2:85247954-85247973 | MS.gene015110:CDS | 35.0% | |
| AAAGAGTGAAATGCATGGTT+TGG | + | chr3.2:85249480-85249499 | MS.gene015110:intron | 35.0% | |
| AAGAAGTGATGGCAAATTTG+GGG | + | chr3.2:85247815-85247834 | MS.gene015110:CDS | 35.0% | |
| AATTTCCATAAGGATCCGTA+AGG | - | chr3.2:85249341-85249360 | None:intergenic | 35.0% | |
| AATTTCTTGCAATAACTCCC+AGG | - | chr3.2:85248887-85248906 | None:intergenic | 35.0% | |
| ACATCATAAGAACTCAACCA+CGG | - | chr3.2:85247535-85247554 | None:intergenic | 35.0% | |
| ATGATGCGTAGCAATATGTT+TGG | + | chr3.2:85249969-85249988 | MS.gene015110:CDS | 35.0% | |
| ATTCATTAAGAATGCCTTGG+AGG | + | chr3.2:85249923-85249942 | MS.gene015110:CDS | 35.0% | |
| CAAGAAGTGATGGCAAATTT+GGG | + | chr3.2:85247814-85247833 | MS.gene015110:CDS | 35.0% | |
| CCATAACCGAAAGATTGATT+AGG | - | chr3.2:85247334-85247353 | None:intergenic | 35.0% | |
| CCGAAAGATTGATTAGGATT+AGG | - | chr3.2:85247328-85247347 | None:intergenic | 35.0% | |
| CCTAATCAATCTTTCGGTTA+TGG | + | chr3.2:85247331-85247350 | MS.gene015110:CDS | 35.0% | |
| CTAACAGGTGTATTGAAATC+AGG | - | chr3.2:85247460-85247479 | None:intergenic | 35.0% | |
| CTGATTTCAATACACCTGTT+AGG | + | chr3.2:85247458-85247477 | MS.gene015110:CDS | 35.0% | |
| GATTATGATTACTCTGGTGT+TGG | + | chr3.2:85247373-85247392 | MS.gene015110:CDS | 35.0% | |
| TAATGTAACAAGGCTCCTTA+CGG | + | chr3.2:85249323-85249342 | MS.gene015110:CDS | 35.0% | |
| TAGACAATACAATAGCTCCA+GGG | - | chr3.2:85248217-85248236 | None:intergenic | 35.0% | |
| TCACTTTCAAGAGATAAGAC+TGG | + | chr3.2:85248912-85248931 | MS.gene015110:CDS | 35.0% | |
| TGAGGTTATTACAAAGATGG+TGG | + | chr3.2:85247912-85247931 | MS.gene015110:CDS | 35.0% | |
| TGGAGCTATTGTATTGTCTA+AGG | + | chr3.2:85248217-85248236 | MS.gene015110:CDS | 35.0% | |
| TTAGACAATACAATAGCTCC+AGG | - | chr3.2:85248218-85248237 | None:intergenic | 35.0% | |
| ! | AAAAAGTATGAAACCCCTTC+AGG | - | chr3.2:85247841-85247860 | None:intergenic | 35.0% |
| ! | AAGGTGCTTGATAAGTATGA+GGG | + | chr3.2:85249996-85250015 | MS.gene015110:CDS | 35.0% |
| ! | AATCATTTGAATGGGGGTAT+TGG | + | chr3.2:85247571-85247590 | MS.gene015110:intron | 35.0% |
| ! | ACGAGAAAAAGCTTGTTCTA+GGG | - | chr3.2:85247290-85247309 | None:intergenic | 35.0% |
| ! | ACTTTTGTCACAGAAATTCC+TGG | + | chr3.2:85248866-85248885 | MS.gene015110:intron | 35.0% |
| ! | AGAATTTGCCTTAGTCTTCA+TGG | + | chr3.2:85248003-85248022 | MS.gene015110:CDS | 35.0% |
| ! | CAAGATTTTGCAAGAAGTGA+TGG | + | chr3.2:85247804-85247823 | MS.gene015110:CDS | 35.0% |
| ! | CAATCTGAGTCTTTTGATCT+TGG | - | chr3.2:85247948-85247967 | None:intergenic | 35.0% |
| ! | CTTTTGTCACAGAAATTCCT+GGG | + | chr3.2:85248867-85248886 | MS.gene015110:intron | 35.0% |
| ! | GAATTTGCCTTAGTCTTCAT+GGG | + | chr3.2:85248004-85248023 | MS.gene015110:CDS | 35.0% |
| ! | TAATCACATGTGTGAGTTGA+TGG | + | chr3.2:85247873-85247892 | MS.gene015110:CDS | 35.0% |
| ! | TTTCGATTTGAGCCATGAAA+GGG | - | chr3.2:85247255-85247274 | None:intergenic | 35.0% |
| !! | AAAGGTGCTTGATAAGTATG+AGG | + | chr3.2:85249995-85250014 | MS.gene015110:CDS | 35.0% |
| !! | CATTGGTTTGATGAATTTCG+TGG | + | chr3.2:85247745-85247764 | MS.gene015110:CDS | 35.0% |
| !! | CTTGTTCTAGGGTTTGATTA+GGG | - | chr3.2:85247279-85247298 | None:intergenic | 35.0% |
| !! | GTATTGAAATCAGGTTGACT+AGG | - | chr3.2:85247451-85247470 | None:intergenic | 35.0% |
| !! | TGTAGTTTGTCACTTTCTCT+TGG | + | chr3.2:85249757-85249776 | MS.gene015110:intron | 35.0% |
| !! | TTTATTTGTTGTGGTCCTGT+TGG | + | chr3.2:85249685-85249704 | MS.gene015110:intron | 35.0% |
| !! | TTTTCGATTTGAGCCATGAA+AGG | - | chr3.2:85247256-85247275 | None:intergenic | 35.0% |
| !!! | AGGGGTTTCATACTTTTTCT+TGG | + | chr3.2:85247843-85247862 | MS.gene015110:CDS | 35.0% |
| !!! | TGTTACGGGTTTGTTTTTAC+AGG | + | chr3.2:85249035-85249054 | MS.gene015110:intron | 35.0% |
| AATTAGACCTCTTTGCTCTC+TGG | - | chr3.2:85248180-85248199 | None:intergenic | 40.0% | |
| ACAGCATCATTAACCCAAGT+TGG | - | chr3.2:85247694-85247713 | None:intergenic | 40.0% | |
| AGACAATACAATAGCTCCAG+GGG | - | chr3.2:85248216-85248235 | None:intergenic | 40.0% | |
| ATACAAATTGCTGCTGAAGC+TGG | - | chr3.2:85249200-85249219 | None:intergenic | 40.0% | |
| ATCGACAGAATCGTTAGGAA+TGG | - | chr3.2:85247137-85247156 | None:intergenic | 40.0% | |
| CCATAACCAAAACCCTTTCA+TGG | + | chr3.2:85247240-85247259 | MS.gene015110:CDS | 40.0% | |
| CCTAACGATTCTGTCGATAA+CGG | + | chr3.2:85247139-85247158 | MS.gene015110:CDS | 40.0% | |
| CGGGTTAAGGTCTTAAATTG+AGG | + | chr3.2:85248472-85248491 | MS.gene015110:intron | 40.0% | |
| CTGAAAATACCAACAGTCTC+AGG | + | chr3.2:85249162-85249181 | MS.gene015110:CDS | 40.0% | |
| CTGCAATCCTGCTTAATATC+CGG | - | chr3.2:85248512-85248531 | None:intergenic | 40.0% | |
| GCAAGAAGTGATGGCAAATT+TGG | + | chr3.2:85247813-85247832 | MS.gene015110:CDS | 40.0% | |
| GCATACTTCATTGTGCTAGA+AGG | + | chr3.2:85249841-85249860 | MS.gene015110:intron | 40.0% | |
| GGATATTAATGGTCATCGTG+TGG | + | chr3.2:85248238-85248257 | MS.gene015110:CDS | 40.0% | |
| GTTTGATGAATTTCGTGGGA+GGG | + | chr3.2:85247750-85247769 | MS.gene015110:CDS | 40.0% | |
| TATTGTGTTAGCCATGCTCA+AGG | + | chr3.2:85248951-85248970 | MS.gene015110:CDS | 40.0% | |
| TCAACAGAGTAATTGCCAAC+AGG | - | chr3.2:85249703-85249722 | None:intergenic | 40.0% | |
| TCGTTCTGTTGAGAAACTGT+TGG | + | chr3.2:85248142-85248161 | MS.gene015110:CDS | 40.0% | |
| TGCAATCCTGCTTAATATCC+GGG | - | chr3.2:85248511-85248530 | None:intergenic | 40.0% | |
| TTACCTCAGTATCAGCATGT+GGG | - | chr3.2:85248286-85248305 | None:intergenic | 40.0% | |
| TTAGCTTATGGTAGAGGTAG+AGG | + | chr3.2:85247493-85247512 | MS.gene015110:CDS | 40.0% | |
| TTCTGATAAACTGAGCACCA+TGG | - | chr3.2:85247987-85248006 | None:intergenic | 40.0% | |
| TTGCCAAAGAGTGAAATGCA+TGG | + | chr3.2:85249475-85249494 | MS.gene015110:intron | 40.0% | |
| TTTACCTCAGTATCAGCATG+TGG | - | chr3.2:85248287-85248306 | None:intergenic | 40.0% | |
| ! | ACTAAGATTTTGTCGGGGTT+CGG | + | chr3.2:85248452-85248471 | MS.gene015110:intron | 40.0% |
| ! | GACGAGAAAAAGCTTGTTCT+AGG | - | chr3.2:85247291-85247310 | None:intergenic | 40.0% |
| ! | GGTTGATCCTATTGGTTATG+AGG | + | chr3.2:85247894-85247913 | MS.gene015110:CDS | 40.0% |
| ! | GTTTTTGCATGATTCAGGAG+TGG | + | chr3.2:85249260-85249279 | MS.gene015110:CDS | 40.0% |
| ! | TGCTAGAAGGCTTGGTTTAT+TGG | + | chr3.2:85249854-85249873 | MS.gene015110:intron | 40.0% |
| ! | TTTGAGCCATGAAAGGGTTT+TGG | - | chr3.2:85247249-85247268 | None:intergenic | 40.0% |
| !! | GAGTTGATGGTTGATCCTAT+TGG | + | chr3.2:85247886-85247905 | MS.gene015110:CDS | 40.0% |
| !! | GCTTGTTCTAGGGTTTGATT+AGG | - | chr3.2:85247280-85247299 | None:intergenic | 40.0% |
| !! | GTAAGGAGCCTTGTTACATT+AGG | - | chr3.2:85249324-85249343 | None:intergenic | 40.0% |
| !!! | ATGTTTTTCTGAGACCCTCT+AGG | + | chr3.2:85248575-85248594 | MS.gene015110:intron | 40.0% |
| !!! | CCATGAAAGGGTTTTGGTTA+TGG | - | chr3.2:85247243-85247262 | None:intergenic | 40.0% |
| AGCATGGCATGATTCCTAGA+GGG | - | chr3.2:85248592-85248611 | None:intergenic | 45.0% | |
| ATGAATCCTCTGTGCCAACT+TGG | + | chr3.2:85247677-85247696 | MS.gene015110:CDS | 45.0% | |
| CACAATCCCGGATATTAAGC+AGG | + | chr3.2:85248502-85248521 | MS.gene015110:intron | 45.0% | |
| CACTGTGATCGAGGTGATAA+CGG | - | chr3.2:85247172-85247191 | None:intergenic | 45.0% | |
| CAGGATTTGAATGCAACTGC+TGG | + | chr3.2:85248529-85248548 | MS.gene015110:intron | 45.0% | |
| CCGTTATCGACAGAATCGTT+AGG | - | chr3.2:85247142-85247161 | None:intergenic | 45.0% | |
| CGGATATTAAGCAGGATTGC+AGG | + | chr3.2:85248510-85248529 | MS.gene015110:intron | 45.0% | |
| CTTCATTGTGCTAGAAGGCT+TGG | + | chr3.2:85249846-85249865 | MS.gene015110:intron | 45.0% | |
| GATGCATGATACTTACGTGC+AGG | - | chr3.2:85249647-85249666 | None:intergenic | 45.0% | |
| GGTTTGATGAATTTCGTGGG+AGG | + | chr3.2:85247749-85247768 | MS.gene015110:CDS | 45.0% | |
| TAACTCAACCACTGTGATCG+AGG | - | chr3.2:85247181-85247200 | None:intergenic | 45.0% | |
| TAAGAATGCCTTGGAGGAAC+TGG | + | chr3.2:85249929-85249948 | MS.gene015110:CDS | 45.0% | |
| TAGCATGGCATGATTCCTAG+AGG | - | chr3.2:85248593-85248612 | None:intergenic | 45.0% | |
| TCTTAGTTGCTCCTTGAGCA+TGG | - | chr3.2:85248965-85248984 | None:intergenic | 45.0% | |
| TGAATCCTCTGTGCCAACTT+GGG | + | chr3.2:85247678-85247697 | MS.gene015110:CDS | 45.0% | |
| TTTCCCACATGCTGATACTG+AGG | + | chr3.2:85248280-85248299 | MS.gene015110:CDS | 45.0% | |
| ! | ATTAACCCAAGTTGGCACAG+AGG | - | chr3.2:85247686-85247705 | None:intergenic | 45.0% |
| ! | ATTATGTCAGCTTTGACCCC+TGG | + | chr3.2:85248197-85248216 | MS.gene015110:CDS | 45.0% |
| ! | CATGGTTTGGCTGTCTTAGT+TGG | + | chr3.2:85249493-85249512 | MS.gene015110:intron | 45.0% |
| ! | CTAAGATTTTGTCGGGGTTC+GGG | + | chr3.2:85248453-85248472 | MS.gene015110:intron | 45.0% |
| !! | CATTTGAATGGGGGTATTGG+TGG | + | chr3.2:85247574-85247593 | MS.gene015110:intron | 45.0% |
| AGGCTCCTTACGGATCCTTA+TGG | + | chr3.2:85249333-85249352 | MS.gene015110:CDS | 50.0% | |
| CAAATTGCTGCTGAAGCTGG+TGG | - | chr3.2:85249197-85249216 | None:intergenic | 50.0% | |
| CGTTATCACCTCGATCACAG+TGG | + | chr3.2:85247170-85247189 | MS.gene015110:CDS | 50.0% | |
| CGTTGGCGAAGGATACACAT+GGG | + | chr3.2:85247779-85247798 | MS.gene015110:CDS | 50.0% | |
| GAGGGTTTATTCGTTGGCGA+AGG | + | chr3.2:85247768-85247787 | MS.gene015110:CDS | 50.0% | |
| GCGGTATGCTTGCTCTTGTT+TGG | + | chr3.2:85248706-85248725 | MS.gene015110:intron | 50.0% | |
| GTTACCACCAGAGAGCAAAG+AGG | + | chr3.2:85248170-85248189 | MS.gene015110:CDS | 50.0% | |
| GTTCTGTTGGTCACACACCA+TGG | + | chr3.2:85247967-85247986 | MS.gene015110:CDS | 50.0% | |
| TAAGAACTCAACCACGGCGA+CGG | - | chr3.2:85247529-85247548 | None:intergenic | 50.0% | |
| TAGACCTCTTTGCTCTCTGG+TGG | - | chr3.2:85248177-85248196 | None:intergenic | 50.0% | |
| TCGTGGGAGGGTTTATTCGT+TGG | + | chr3.2:85247762-85247781 | MS.gene015110:CDS | 50.0% | |
| TCGTTGGCGAAGGATACACA+TGG | + | chr3.2:85247778-85247797 | MS.gene015110:CDS | 50.0% | |
| TGTAGGTTGCCTGAGACTGT+TGG | - | chr3.2:85249174-85249193 | None:intergenic | 50.0% | |
| ! | ATGGCAAATTTGGGGCCTGA+AGG | + | chr3.2:85247823-85247842 | MS.gene015110:CDS | 50.0% |
| ! | TGAGGCTGCTTTCACAATCC+CGG | + | chr3.2:85248490-85248509 | MS.gene015110:intron | 50.0% |
| ! | TGGCAAATTTGGGGCCTGAA+GGG | + | chr3.2:85247824-85247843 | MS.gene015110:CDS | 50.0% |
| !! | ATTGGTGGTGGTGGTGGTTA+TGG | + | chr3.2:85247589-85247608 | MS.gene015110:intron | 50.0% |
| !! | GGTGGTGGTGGTTATGGTTA+TGG | + | chr3.2:85247595-85247614 | MS.gene015110:intron | 50.0% |
| !! | TTGAATGGGGGTATTGGTGG+TGG | + | chr3.2:85247577-85247596 | MS.gene015110:intron | 50.0% |
| !! | TTTTGTCGGGGTTCGGGTTA+AGG | + | chr3.2:85248459-85248478 | MS.gene015110:intron | 50.0% |
| GCTGGCACTGTGCAGATTGT+GGG | + | chr3.2:85248547-85248566 | MS.gene015110:intron | 55.0% | |
| TGCTGGCACTGTGCAGATTG+TGG | + | chr3.2:85248546-85248565 | MS.gene015110:intron | 55.0% | |
| TGCTTCGACCAGTTCCTCCA+AGG | - | chr3.2:85249940-85249959 | None:intergenic | 55.0% | |
| ! | GGCAAATTTGGGGCCTGAAG+GGG | + | chr3.2:85247825-85247844 | MS.gene015110:CDS | 55.0% |
| !! | AATGGGGGTATTGGTGGTGG+TGG | + | chr3.2:85247580-85247599 | MS.gene015110:intron | 55.0% |
| ! | GCTGCTGAAGCTGGTGGTGT+AGG | - | chr3.2:85249191-85249210 | None:intergenic | 60.0% |
| GAACTCAACCACGGCGACGG+CGG | - | chr3.2:85247526-85247545 | None:intergenic | 65.0% | |
| !! | GGGGGTATTGGTGGTGGTGG+TGG | + | chr3.2:85247583-85247602 | MS.gene015110:intron | 65.0% |
| GAATTTCGCCGCCGTCGCCG+TGG | + | chr3.2:85247515-85247534 | MS.gene015110:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 85247118 | 85250043 | 85247118 | ID=MS.gene015110 |
| chr3.2 | mRNA | 85247118 | 85250043 | 85247118 | ID=MS.gene015110.t1;Parent=MS.gene015110 |
| chr3.2 | exon | 85247118 | 85247566 | 85247118 | ID=MS.gene015110.t1.exon1;Parent=MS.gene015110.t1 |
| chr3.2 | CDS | 85247118 | 85247566 | 85247118 | ID=cds.MS.gene015110.t1;Parent=MS.gene015110.t1 |
| chr3.2 | exon | 85247675 | 85248025 | 85247675 | ID=MS.gene015110.t1.exon2;Parent=MS.gene015110.t1 |
| chr3.2 | CDS | 85247675 | 85248025 | 85247675 | ID=cds.MS.gene015110.t1;Parent=MS.gene015110.t1 |
| chr3.2 | exon | 85248139 | 85248301 | 85248139 | ID=MS.gene015110.t1.exon3;Parent=MS.gene015110.t1 |
| chr3.2 | CDS | 85248139 | 85248301 | 85248139 | ID=cds.MS.gene015110.t1;Parent=MS.gene015110.t1 |
| chr3.2 | exon | 85248879 | 85249042 | 85248879 | ID=MS.gene015110.t1.exon4;Parent=MS.gene015110.t1 |
| chr3.2 | CDS | 85248879 | 85249042 | 85248879 | ID=cds.MS.gene015110.t1;Parent=MS.gene015110.t1 |
| chr3.2 | exon | 85249134 | 85249392 | 85249134 | ID=MS.gene015110.t1.exon5;Parent=MS.gene015110.t1 |
| chr3.2 | CDS | 85249134 | 85249392 | 85249134 | ID=cds.MS.gene015110.t1;Parent=MS.gene015110.t1 |
| chr3.2 | exon | 85249915 | 85250043 | 85249915 | ID=MS.gene015110.t1.exon6;Parent=MS.gene015110.t1 |
| chr3.2 | CDS | 85249915 | 85250043 | 85249915 | ID=cds.MS.gene015110.t1;Parent=MS.gene015110.t1 |
| Gene Sequence |
| Protein sequence |
