AlfalfaGEDB | MS.gene015110

M. sativa cultivar XinJiangDaYe / MS.gene015110

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00806.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015110.t1	XP_024634816.1	77.8	558	68	4	1	504	1	556	4.70E-204	720.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015110.t1	Q9LVC3	31.4	388	248	6	112	498	225	595	2.8e-48	194.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015110.t1	A0A396IYZ7	76.1	539	92	3	1	504	1	537	7.4e-175	623.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene016597	MS.gene015110	PPI
MS.gene056242	MS.gene015110	PPI
MS.gene60129	MS.gene015110	PPI
MS.gene88489	MS.gene015110	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015110.t1	MTR_3g102650	89.831	531	17	3	1	496	1	529	0.0	914
MS.gene015110.t1	MTR_2g008770	37.778	315	194	1	178	492	426	738	5.10e-67	229
MS.gene015110.t1	MTR_5g063650	35.549	346	217	5	150	494	367	707	1.61e-61	214
MS.gene015110.t1	MTR_1g106975	29.204	339	232	3	158	492	113	447	2.43e-44	162
MS.gene015110.t1	MTR_2g006930	30.938	320	211	5	179	492	105	420	7.32e-44	160
MS.gene015110.t1	MTR_1g100230	29.245	318	218	4	179	492	90	404	2.33e-41	153
MS.gene015110.t1	MTR_1g051630	98.438	64	1	0	258	321	38	101	5.43e-38	135
MS.gene015110.t1	MTR_5g062070	29.644	253	177	1	212	464	22	273	6.92e-34	131
MS.gene015110.t1	MTR_2g036900	27.077	325	218	7	181	496	659	973	5.26e-32	131
MS.gene015110.t1	MTR_2g006940	26.978	278	189	3	179	453	112	378	1.02e-29	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015110.t1	AT5G56510	34.794	388	235	7	112	498	225	595	2.73e-64	219
MS.gene015110.t1	AT5G56510	34.794	388	235	7	112	498	225	595	2.73e-64	219
MS.gene015110.t1	AT5G56510	34.794	388	235	7	112	498	225	595	2.73e-64	219
MS.gene015110.t1	AT5G56510	34.794	388	235	7	112	498	225	595	2.73e-64	219
MS.gene015110.t1	AT5G56510	34.794	388	235	7	112	498	225	595	2.73e-64	219
MS.gene015110.t1	AT1G22240	35.962	317	199	3	178	494	198	510	1.52e-62	213
MS.gene015110.t1	AT5G56510	35.227	352	212	6	112	462	225	561	1.45e-59	206
MS.gene015110.t1	AT1G78160	34.700	317	203	3	178	494	335	647	5.66e-59	206
MS.gene015110.t1	AT1G78160	34.700	317	203	3	178	494	333	645	5.71e-59	206
MS.gene015110.t1	AT4G08840	37.580	314	190	4	181	494	244	551	5.72e-59	204

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Find 111 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACTCAGATTGTTCTGT+TGG	0.482072	3.2:+85247954	MS.gene015110:CDS
AAAGGTGCTTGATAAGTATG+AGG	0.451082	3.2:+85249995	MS.gene015110:CDS
AAATATACCCATGAAGACTA+AGG	0.517695	3.2:-85248011	None:intergenic
AAGAAGTGATGGCAAATTTG+GGG	0.640787	3.2:+85247815	MS.gene015110:CDS
AAGGTGCTTGATAAGTATGA+GGG	0.623255	3.2:+85249996	MS.gene015110:CDS
AAGTTATTATTATTCCTAAC+AGG	0.357786	3.2:-85247472	None:intergenic
AATAACTTAGCTTATGGTAG+AGG	0.515646	3.2:+85247487	MS.gene015110:CDS
AATAATAATAACTTAGCTTA+TGG	0.353348	3.2:+85247481	MS.gene015110:CDS
AATTAGACCTCTTTGCTCTC+TGG	0.422483	3.2:-85248177	None:intergenic
AATTTCCATAAGGATCCGTA+AGG	0.628856	3.2:-85249338	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATACCCATGAAGACTA+AGG	-	chr3.2:85248014-85248033	None:intergenic	30.0%
AATAACTTAGCTTATGGTAG+AGG	+	chr3.2:85247487-85247506	MS.gene015110:CDS	30.0%
AGGTATAATCATTTGAATGG+GGG	+	chr3.2:85247565-85247584	MS.gene015110:intron	30.0%
ATTACTGCCATATTTATTGC+AGG	-	chr3.2:85249229-85249248	None:intergenic	30.0%
CCTAATCCTAATCAATCTTT+CGG	+	chr3.2:85247325-85247344	MS.gene015110:CDS	30.0%
CTATTAGCTGAAGATTGTTA+CGG	+	chr3.2:85249020-85249039	MS.gene015110:CDS	30.0%
CTGATGACAAAATTTCCATA+AGG	-	chr3.2:85249351-85249370	None:intergenic	30.0%
CTTAGTCAATTTATGAGGAA+CGG	-	chr3.2:85248438-85248457	None:intergenic	30.0%
GTAATAACCTCATAACCAAT+AGG	-	chr3.2:85247904-85247923	None:intergenic	30.0%
TAAATATGGCAGTAATGTAG+TGG	+	chr3.2:85249233-85249252	MS.gene015110:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	85247118	85250043	85247118	ID=MS.gene015110
chr3.2	mRNA	85247118	85250043	85247118	ID=MS.gene015110.t1;Parent=MS.gene015110
chr3.2	exon	85247118	85247566	85247118	ID=MS.gene015110.t1.exon1;Parent=MS.gene015110.t1
chr3.2	CDS	85247118	85247566	85247118	ID=cds.MS.gene015110.t1;Parent=MS.gene015110.t1
chr3.2	exon	85247675	85248025	85247675	ID=MS.gene015110.t1.exon2;Parent=MS.gene015110.t1
chr3.2	CDS	85247675	85248025	85247675	ID=cds.MS.gene015110.t1;Parent=MS.gene015110.t1
chr3.2	exon	85248139	85248301	85248139	ID=MS.gene015110.t1.exon3;Parent=MS.gene015110.t1
chr3.2	CDS	85248139	85248301	85248139	ID=cds.MS.gene015110.t1;Parent=MS.gene015110.t1
chr3.2	exon	85248879	85249042	85248879	ID=MS.gene015110.t1.exon4;Parent=MS.gene015110.t1
chr3.2	CDS	85248879	85249042	85248879	ID=cds.MS.gene015110.t1;Parent=MS.gene015110.t1
chr3.2	exon	85249134	85249392	85249134	ID=MS.gene015110.t1.exon5;Parent=MS.gene015110.t1
chr3.2	CDS	85249134	85249392	85249134	ID=cds.MS.gene015110.t1;Parent=MS.gene015110.t1
chr3.2	exon	85249915	85250043	85249915	ID=MS.gene015110.t1.exon6;Parent=MS.gene015110.t1
chr3.2	CDS	85249915	85250043	85249915	ID=cds.MS.gene015110.t1;Parent=MS.gene015110.t1

Gene Sequence

>MS.gene015110

ATGTCGAACAATCGTTCCATTCCTAACGATTCTGTCGATAACGGTGATGCGCCGTTATCACCTCGATCACAGTGGTTGAGTTACATAGCATCGTTAACCCAAAACCAGAACAATAACAATATCCATAACCAAAACCCTTTCATGGCTCAAATCGAAAACCCTAATCAAACCCTAGAACAAGCTTTTTCTCGTCTTTCTGTTGCTAATCCTAATCCTAATCAATCTTTCGGTTATGGTGTTGCTAATAATCTTAATGATTATGATTACTCTGGTGTTGGTGTTAGTGTTAATCCTTATTATAACTATAACTATGGGATTCAACTCTCTAATCCTAGTCAACCTGATTTCAATACACCTGTTAGGAATAATAATAACTTAGCTTATGGTAGAGGTAGAGGAATTTCGCCGCCGTCGCCGTGGTTGAGTTCTTATGATGTAAATCAGATTAGGTATAATCATTTGAATGGGGGTATTGGTGGTGGTGGTGGTTATGGTTATGGTAATGATATGTTTTATGGTAGTGAAGAACTTATAAGAAATTTTCAATGTGCTTTAAGGAATGAATCCTCTGTGCCAACTTGGGTTAATGATGCTGTTAATGTTAATAATGTTAATGGAATGAATGCACATTGGTTTGATGAATTTCGTGGGAGGGTTTATTCGTTGGCGAAGGATACACATGGGAGCAAGATTTTGCAAGAAGTGATGGCAAATTTGGGGCCTGAAGGGGTTTCATACTTTTTCTTGGAGCTGATTAATCACATGTGTGAGTTGATGGTTGATCCTATTGGTTATGAGGTTATTACAAAGATGGTGGAAGTTTGTAACCAAGATCAAAAGACTCAGATTGTTCTGTTGGTCACACACCATGGTGCTCAGTTTATCAGAATTTGCCTTAGTCTTCATGGGTATATTTTCAACAATCTTTGTTTCTTGTTTCTTAAGGCATTGTAAATTGTGTTTTTTGTAATTGATTAATTCACATGTATATGTACTGAGAAAATTTAATTTATTGTTCAAGATCTCGTTCTGTTGAGAAACTGTTGGAGAAAGTTACCACCAGAGAGCAAAGAGGTCTAATTATGTCAGCTTTGACCCCTGGAGCTATTGTATTGTCTAAGGATATTAATGGTCATCGTGTGGTTTTCAATTGTTTGAAAAATTTCCCACATGCTGATACTGAGGTAAAATGTTTTCTTCATTTTATTTTGTTACATTCATACACACTTTCAATTGTTGTTAAACTAGAGAGACACTTTAAGTTCAAATTGTGGATCCTTTTACAAACAAAACAATCTATTTAAATGTAATTTAAGGCCGTTCCTCATAAATTGACTAAGATTTTGTCGGGGTTCGGGTTAAGGTCTTAAATTGAGGCTGCTTTCACAATCCCGGATATTAAGCAGGATTGCAGGATTTGAATGCAACTGCTGGCACTGTGCAGATTGTGGGTTTATATGTTTTTCTGAGACCCTCTAGGAATCATGCCATGCTACACTATGAAAATTAATTCTTGTTATCATATTTAACTGTACACTTTGTTTTAAGTATTCCTTTCTTTATCCACATTTTTTAGAGTAAATGAATAGCGGTATGCTTGCTCTTGTTTGGATTAGCACTTCAGCATTTATACAATTATTTGTTATCTCTTTGCCTAAGTTCTAAAGAAAGGAAAAAGGATAACCACTATTATTAGATAAATACCGGTTTGAAAAATTACTTAACTTCAGTTTATGTTCTGATTATGGACTTTTGTCACAGAAATTCCTGGGAGTTATTGCAAGAAATTCTTTGTCACTTTCAAGAGATAAGACTGGATGTTGTGTGCTGCAGTATTGTGTTAGCCATGCTCAAGGAGCAACTAAGAATCTTCTGATTCATGAAATCATACTTCATGCTCCACTATTAGCTGAAGATTGTTACGGGTTTGTTTTTACAGGCATTTAGTTATTTTCTTTCTAGCCAATATAGCCAACTTTACTAATCTTCATTGTGTTTTGTTTTTTCATCTTGCAGCAACTATGTGATTCAACATCTATTATCTCTGAAAATACCAACAGTCTCAGGCAACCTACACCACCAGCTTCAGCAGCAATTTGTATCTCTTTCCTGCAATAAATATGGCAGTAATGTAGTGGAAAAGTTTTTGCATGATTCAGGAGTGGATATATCTTCCTGCATCATTATAGAATTGCTAAATGATCCTAATGTAACAAGGCTCCTTACGGATCCTTATGGAAATTTTGTCATCAGTACTGCATTGAATAAATTTAAGGTTAGCTCTCTTGAATGCATTGTGTTTTCTCAATCTTTGTTTTTCTGTATCACTCAATTTTCTAATTCGGTATCTTGGCTAATTGCCAAAGAGTGAAATGCATGGTTTGGCTGTCTTAGTTGGATTAATATTTTTTTTTCTTTCAAAAAATGTATCTACTCGAAGATGTTAGCTACATACATATTTTCTTTTTTTCTTCTTTAGATGGCTAAATTATTTTAGAAAGGCTTAAAGTTGGTTTTTGTTAATGTCCTGCACGTAAGTATCATGCATCTCCTCAATTTTTAAGCAGTTTATTTGTTGTGGTCCTGTTGGCAATTACTCTGTTGAAACAAACATGTAACACATGGTTTTTATTCGAATATGTAGTTTGTCACTTTCTCTTGGCATGTGTAGAGTATATTATATTATAAACAAACACTGTATTAAACTCAATATTCTATTAGCTGCATACTTCATTGTGCTAGAAGGCTTGGTTTATTGGCCGTTGTGATAACTTTGTTTTTCTTATTTAATAAACAGGGTGCTAGATTCATTAAGAATGCCTTGGAGGAACTGGTCGAAGCAAATTCTCAAATGATGCGTAGCAATATGTTTGGCAAAAAGGTGCTTGATAAGTATGAGGGTAAAAATCGGCGTAATAATATATAA

Protein sequence

>MS.gene015110.t1

MSNNRSIPNDSVDNGDAPLSPRSQWLSYIASLTQNQNNNNIHNQNPFMAQIENPNQTLEQAFSRLSVANPNPNQSFGYGVANNLNDYDYSGVGVSVNPYYNYNYGIQLSNPSQPDFNTPVRNNNNLAYGRGRGISPPSPWLSSYDVNQIRNESSVPTWVNDAVNVNNVNGMNAHWFDEFRGRVYSLAKDTHGSKILQEVMANLGPEGVSYFFLELINHMCELMVDPIGYEVITKMVEVCNQDQKTQIVLLVTHHGAQFIRICLSLHGSRSVEKLLEKVTTREQRGLIMSALTPGAIVLSKDINGHRVVFNCLKNFPHADTEKFLGVIARNSLSLSRDKTGCCVLQYCVSHAQGATKNLLIHEIILHAPLLAEDCYGNYVIQHLLSLKIPTVSGNLHHQLQQQFVSLSCNKYGSNVVEKFLHDSGVDISSCIIIELLNDPNVTRLLTDPYGNFVISTALNKFKGARFIKNALEELVEANSQMMRSNMFGKKVLDKYEGKNRRNNI