Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015216.t1 | XP_003611648.1 | 99 | 514 | 5 | 0 | 1 | 514 | 1 | 514 | 6.60E-262 | 912.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015216.t1 | Q9SNV9 | 84.3 | 453 | 71 | 0 | 48 | 500 | 49 | 501 | 2.4e-220 | 766.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015216.t1 | G7K3Y6 | 99.0 | 514 | 5 | 0 | 1 | 514 | 1 | 514 | 4.8e-262 | 912.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85960 | MS.gene015216 | PPI |
| MS.gene83599 | MS.gene015216 | PPI |
| MS.gene015216 | MS.gene067471 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015216.t1 | MTR_5g016270 | 98.833 | 514 | 6 | 0 | 1 | 514 | 1 | 514 | 0.0 | 1024 |
| MS.gene015216.t1 | MTR_4g095075 | 84.708 | 497 | 70 | 1 | 18 | 514 | 25 | 515 | 0.0 | 848 |
| MS.gene015216.t1 | MTR_3g102620 | 77.282 | 471 | 101 | 1 | 24 | 494 | 44 | 508 | 0.0 | 752 |
| MS.gene015216.t1 | MTR_8g028050 | 67.505 | 477 | 151 | 1 | 22 | 494 | 49 | 525 | 0.0 | 679 |
| MS.gene015216.t1 | MTR_3g088440 | 42.857 | 455 | 236 | 8 | 52 | 490 | 34 | 480 | 1.94e-107 | 330 |
| MS.gene015216.t1 | MTR_2g104990 | 41.667 | 456 | 244 | 8 | 51 | 491 | 44 | 492 | 6.13e-106 | 327 |
| MS.gene015216.t1 | MTR_2g104990 | 41.667 | 456 | 244 | 8 | 51 | 491 | 69 | 517 | 6.94e-106 | 328 |
| MS.gene015216.t1 | MTR_3g088460 | 40.041 | 492 | 270 | 8 | 16 | 490 | 4 | 487 | 1.34e-99 | 311 |
| MS.gene015216.t1 | MTR_3g088440 | 46.197 | 355 | 177 | 6 | 52 | 398 | 34 | 382 | 1.45e-96 | 298 |
| MS.gene015216.t1 | MTR_3g088460 | 41.748 | 412 | 223 | 7 | 16 | 418 | 4 | 407 | 6.32e-95 | 295 |
| MS.gene015216.t1 | MTR_4g028490 | 75.949 | 79 | 18 | 1 | 1 | 79 | 1 | 78 | 8.33e-29 | 109 |
| MS.gene015216.t1 | MTR_0041s0030 | 26.824 | 425 | 257 | 14 | 61 | 466 | 38 | 427 | 2.33e-26 | 114 |
| MS.gene015216.t1 | MTR_2g062640 | 25.424 | 354 | 205 | 10 | 97 | 444 | 3 | 303 | 2.84e-21 | 96.3 |
| MS.gene015216.t1 | MTR_4g094602 | 39.726 | 146 | 75 | 4 | 225 | 360 | 1 | 143 | 8.71e-19 | 83.6 |
| MS.gene015216.t1 | MTR_2g062640 | 25.076 | 331 | 225 | 10 | 120 | 444 | 22 | 335 | 3.12e-16 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015216.t1 | AT2G23150 | 81.933 | 476 | 85 | 1 | 25 | 500 | 27 | 501 | 0.0 | 805 |
| MS.gene015216.t1 | AT5G67330 | 75.889 | 506 | 116 | 2 | 2 | 507 | 5 | 504 | 0.0 | 778 |
| MS.gene015216.t1 | AT1G47240 | 78.033 | 478 | 101 | 1 | 17 | 494 | 34 | 507 | 0.0 | 775 |
| MS.gene015216.t1 | AT4G18790 | 67.775 | 481 | 148 | 1 | 11 | 491 | 33 | 506 | 0.0 | 665 |
| MS.gene015216.t1 | AT1G15960 | 42.619 | 420 | 227 | 7 | 51 | 463 | 34 | 446 | 7.92e-105 | 324 |
| MS.gene015216.t1 | AT1G80830 | 42.619 | 420 | 227 | 7 | 51 | 463 | 42 | 454 | 1.94e-101 | 315 |
| MS.gene015216.t1 | AT1G80830 | 42.619 | 420 | 227 | 7 | 51 | 463 | 42 | 454 | 1.94e-101 | 315 |
| MS.gene015216.t1 | AT5G03280 | 25.389 | 386 | 265 | 9 | 61 | 439 | 24 | 393 | 4.31e-29 | 122 |
Find 123 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCCCAATCCTGTATATA+TGG | 0.228743 | 5.4:-9685820 | MS.gene015216:CDS |
| CTCTCATTTGCATGGATGTT+TGG | 0.230544 | 5.4:-9686326 | MS.gene015216:CDS |
| TTCCTCTTTCTTGAGAATTA+TGG | 0.232223 | 5.4:-9686398 | MS.gene015216:CDS |
| GTAATGGCCTTGTTCCTCTT+TGG | 0.242402 | 5.4:-9687550 | MS.gene015216:CDS |
| CTTGGGCAAGGATTGTTCTT+TGG | 0.245807 | 5.4:-9687649 | MS.gene015216:CDS |
| TGCCGTTCTTATTGCTATAA+TGG | 0.260123 | 5.4:-9686351 | MS.gene015216:CDS |
| GGTTTCAAAGGAACAAATAA+TGG | 0.283702 | 5.4:-9685537 | MS.gene015216:CDS |
| TAATGGCCTTGTTCCTCTTT+GGG | 0.305235 | 5.4:-9687549 | MS.gene015216:CDS |
| TCTTATGTGGGCTACGGCTA+TGG | 0.312128 | 5.4:-9687756 | MS.gene015216:CDS |
| CGCTGTTATGGCTTCTTATG+TGG | 0.313493 | 5.4:-9687769 | MS.gene015216:CDS |
| TCTGATATTCAAGAGGTTAT+AGG | 0.318147 | 5.4:-9687599 | MS.gene015216:CDS |
| CTGATATTCAAGAGGTTATA+GGG | 0.327415 | 5.4:-9687598 | MS.gene015216:CDS |
| TAGGGAGTGCTATTGCTATT+AGG | 0.333861 | 5.4:-9687580 | MS.gene015216:CDS |
| AGATCTCCTTCCAAGTTTCC+AGG | 0.335579 | 5.4:+9687818 | None:intergenic |
| CTTCAATCTGGTGCAATTGC+TGG | 0.345914 | 5.4:-9687797 | MS.gene015216:CDS |
| TTGCTGGGTATTCGCTGTTA+TGG | 0.347044 | 5.4:-9687781 | MS.gene015216:CDS |
| ATTGATTCCCTTGCTTTGTT+TGG | 0.349044 | 5.4:-9685558 | MS.gene015216:CDS |
| GAATTATGGTGTGAGGAAAT+TGG | 0.350066 | 5.4:-9686384 | MS.gene015216:CDS |
| TTCCTGGCTTGTGGCTGCTC+TGG | 0.351790 | 5.4:-9684665 | MS.gene015216:CDS |
| GACAAATATATTAATAATAA+AGG | 0.352339 | 5.4:+9685943 | None:intergenic |
| TCCTGTATATATGGGGTATT+GGG | 0.357893 | 5.4:-9685811 | MS.gene015216:CDS |
| CTTATGTGGGCTACGGCTAT+GGG | 0.366792 | 5.4:-9687755 | MS.gene015216:CDS |
| AACAGCTTGTTGTATAGTTC+TGG | 0.368091 | 5.4:+9686114 | None:intergenic |
| GTTTCAAAGGAACAAATAAT+GGG | 0.368092 | 5.4:-9685536 | MS.gene015216:CDS |
| TCTGAAAAGGTTGTCGTTGT+TGG | 0.368268 | 5.4:-9687965 | MS.gene015216:CDS |
| GCTCTGGTGATAGTGATAAA+TGG | 0.371973 | 5.4:-9684649 | MS.gene015216:CDS |
| ACGTAACGGAGCTTGAAATA+AGG | 0.375796 | 5.4:+9684527 | None:intergenic |
| TAGCGCAATGGTGGACTCTA+TGG | 0.377756 | 5.4:+9685973 | None:intergenic |
| CAGTACCTTCAGGAGAAGTA+TGG | 0.378008 | 5.4:-9685851 | MS.gene015216:CDS |
| ATCCTGTATATATGGGGTAT+TGG | 0.391603 | 5.4:-9685812 | MS.gene015216:CDS |
| CTTGCTTTGTTTGGTTTCAA+AGG | 0.392387 | 5.4:-9685549 | MS.gene015216:CDS |
| TGTTGCTACGGGGAGACATT+TGG | 0.399325 | 5.4:-9687699 | MS.gene015216:CDS |
| ATGACTGAAGTTGCTTTGAT+TGG | 0.400536 | 5.4:-9687623 | MS.gene015216:CDS |
| CGCTTACGATTCATCTGAAA+AGG | 0.410529 | 5.4:-9687978 | MS.gene015216:CDS |
| TTTCAATACAGACCATTTCC+TGG | 0.412146 | 5.4:-9684681 | MS.gene015216:intron |
| CAACAAGCTGTTGGAGTTGT+TGG | 0.415507 | 5.4:-9686103 | MS.gene015216:CDS |
| GGCCTTGTTCCTCTTTGGGC+TGG | 0.416642 | 5.4:-9687545 | MS.gene015216:CDS |
| ATGGTACTGAAATAGCAAAT+AGG | 0.419910 | 5.4:-9685895 | MS.gene015216:CDS |
| ATAATGGGCACTTTCAAGAT+TGG | 0.421189 | 5.4:-9685521 | MS.gene015216:CDS |
| AGCAAGGGAATCAATGCAAA+AGG | 0.422846 | 5.4:+9685566 | None:intergenic |
| TTCGTAAGCTTCTTCTTCGT+CGG | 0.424334 | 5.4:+9687940 | None:intergenic |
| ATTCCCAATCCTGTATATAT+GGG | 0.424368 | 5.4:-9685819 | MS.gene015216:CDS |
| ATAGTTCTGGAGCTAAGTTT+AGG | 0.430966 | 5.4:+9686127 | None:intergenic |
| GATGGTGTTGATGTTCTTGT+TGG | 0.436854 | 5.4:-9686290 | MS.gene015216:intron |
| TGCTCTTGTTCAATCCAGGC+AGG | 0.441118 | 5.4:-9686044 | MS.gene015216:CDS |
| TACCCCATATATACAGGATT+GGG | 0.442489 | 5.4:+9685816 | None:intergenic |
| CTCTGGTTATTCAGTGGACC+AGG | 0.445817 | 5.4:-9687869 | MS.gene015216:CDS |
| AAATGCAGGGCAGTACCTTC+AGG | 0.445908 | 5.4:-9685861 | MS.gene015216:CDS |
| TTGTCATTACTGCTTTAGAT+TGG | 0.452490 | 5.4:-9687520 | MS.gene015216:intron |
| AGCAGCCACAAGCCAGGAAA+TGG | 0.465152 | 5.4:+9684669 | None:intergenic |
| GGTCAGAGTAGCACTATTAC+TGG | 0.465242 | 5.4:-9685776 | MS.gene015216:CDS |
| GCAAGGTTAGGTGTTGCTAC+GGG | 0.467938 | 5.4:-9687710 | MS.gene015216:CDS |
| GGATGAGGGCGTTGATTACT+CGG | 0.472145 | 5.4:-9685697 | MS.gene015216:CDS |
| GCTGTTATGGCTTCTTATGT+GGG | 0.476897 | 5.4:-9687768 | MS.gene015216:CDS |
| CAGAGTTTCTTCCATGAAAA+CGG | 0.480510 | 5.4:+9687887 | None:intergenic |
| CACCATAATTCTCAAGAAAG+AGG | 0.481932 | 5.4:+9686396 | None:intergenic |
| ATTCTGCTCTTGTTCAATCC+AGG | 0.482576 | 5.4:-9686048 | MS.gene015216:CDS |
| TACGAAGCCGAAGTGGACTC+TGG | 0.484152 | 5.4:-9687923 | MS.gene015216:CDS |
| TGTCACAACTGTGTTTGCTA+AGG | 0.491481 | 5.4:-9685924 | MS.gene015216:CDS |
| ACCCAATACCCCATATATAC+AGG | 0.494023 | 5.4:+9685810 | None:intergenic |
| ACAAGAACATCAACACCATC+TGG | 0.500462 | 5.4:+9686293 | None:intergenic |
| GTCACAACTGTGTTTGCTAA+GGG | 0.500490 | 5.4:-9685923 | MS.gene015216:CDS |
| TTGGAAGGAGATCTTCAATC+TGG | 0.500957 | 5.4:-9687809 | MS.gene015216:CDS |
| AGCAAGGTTAGGTGTTGCTA+CGG | 0.506542 | 5.4:-9687711 | MS.gene015216:CDS |
| TTCAATCTGGTGCAATTGCT+GGG | 0.512314 | 5.4:-9687796 | MS.gene015216:CDS |
| ATACCCCATATATACAGGAT+TGG | 0.515369 | 5.4:+9685815 | None:intergenic |
| GTTGTTCTAACAGAGGTTGT+TGG | 0.516654 | 5.4:+9688023 | None:intergenic |
| TTGGATCCTGGAAACTTGGA+AGG | 0.517550 | 5.4:-9687824 | MS.gene015216:CDS |
| AGGATCGGTCTTGTAAATGC+AGG | 0.518450 | 5.4:-9685875 | MS.gene015216:CDS |
| ATGGCTTCTTATGTGGGCTA+CGG | 0.520318 | 5.4:-9687762 | MS.gene015216:CDS |
| ACTATTACTGGTACATATGC+TGG | 0.527712 | 5.4:-9685764 | MS.gene015216:CDS |
| GTAGAGATGAGTATCCTACT+TGG | 0.535483 | 5.4:-9687667 | MS.gene015216:CDS |
| CAAGATTGGCTCTGTCCTCA+AGG | 0.536538 | 5.4:-9685507 | MS.gene015216:intron |
| ATAAGTGCAACTATCATAGT+CGG | 0.536590 | 5.4:+9685659 | None:intergenic |
| TAATGGCTCTCTCATTTGCA+TGG | 0.545987 | 5.4:-9686334 | MS.gene015216:CDS |
| TAAGTGCAACTATCATAGTC+GGG | 0.551179 | 5.4:+9685660 | None:intergenic |
| GATCGAGTTAATCTTTGCCA+AGG | 0.551708 | 5.4:+9684499 | None:intergenic |
| ACAGACCATTTCCTGGCTTG+TGG | 0.551762 | 5.4:-9684674 | MS.gene015216:intron |
| GCTATACTCATCAGAAAACC+TGG | 0.552760 | 5.4:+9687851 | None:intergenic |
| TCTTGTTGTTGTTCTAACAG+AGG | 0.555158 | 5.4:+9688016 | None:intergenic |
| CTTTGAAACCAAACAAAGCA+AGG | 0.557493 | 5.4:+9685550 | None:intergenic |
| TTAGAACAACAACAAGAAGA+AGG | 0.558025 | 5.4:-9688010 | MS.gene015216:CDS |
| GGTATTGGGTTACTAGCAGC+TGG | 0.560371 | 5.4:-9685797 | MS.gene015216:CDS |
| CACCAGAGCAGCCACAAGCC+AGG | 0.561920 | 5.4:+9684663 | None:intergenic |
| AGAACTATACAACAAGCTGT+TGG | 0.566192 | 5.4:-9686112 | MS.gene015216:CDS |
| CACTGCTCCACTCACTTCAG+AGG | 0.566376 | 5.4:+9684603 | None:intergenic |
| GCAAGGGAATCAATGCAAAA+GGG | 0.569154 | 5.4:+9685567 | None:intergenic |
| TTCTTGAGAATTATGGTGTG+AGG | 0.571214 | 5.4:-9686391 | MS.gene015216:CDS |
| TAGAGATGAGTATCCTACTT+GGG | 0.572208 | 5.4:-9687666 | MS.gene015216:CDS |
| AGAACAATCCTTGCCCAAGT+AGG | 0.575207 | 5.4:+9687653 | None:intergenic |
| AGAAGCTTACGAAGCCGAAG+TGG | 0.586489 | 5.4:-9687930 | MS.gene015216:CDS |
| TTTGAAACCAAACAAAGCAA+GGG | 0.595987 | 5.4:+9685551 | None:intergenic |
| GGAGACAACTAGCGCAATGG+TGG | 0.598232 | 5.4:+9685964 | None:intergenic |
| CGCCTCCATACTTCTCCTGA+AGG | 0.601191 | 5.4:+9685846 | None:intergenic |
| CACCAGCCCAAAGAGGAACA+AGG | 0.602260 | 5.4:+9687543 | None:intergenic |
| ACTTATATTTGATTCTTCAG+AGG | 0.602962 | 5.4:-9685642 | MS.gene015216:CDS |
| ATGAGTATCCTACTTGGGCA+AGG | 0.603524 | 5.4:-9687661 | MS.gene015216:CDS |
| ATATGCTGGACAATTCATCA+TGG | 0.605595 | 5.4:-9685750 | MS.gene015216:CDS |
| GATTGGTTCTGATATTCAAG+AGG | 0.612261 | 5.4:-9687606 | MS.gene015216:CDS |
| CAGAGGTTGTTGGTGAGACA+TGG | 0.620954 | 5.4:+9688033 | None:intergenic |
| GGATCGGTCTTGTAAATGCA+GGG | 0.624462 | 5.4:-9685874 | MS.gene015216:CDS |
| AGCCATTATAGCAATAAGAA+CGG | 0.624673 | 5.4:+9686349 | None:intergenic |
| TCGTACTCCAGAGTCCACTT+CGG | 0.626443 | 5.4:+9687916 | None:intergenic |
| CTTCAGGAGAAGTATGGAGG+CGG | 0.626449 | 5.4:-9685845 | MS.gene015216:CDS |
| GCTGGACAATTCATCATGGG+TGG | 0.626939 | 5.4:-9685746 | MS.gene015216:CDS |
| TATGCTGGACAATTCATCAT+GGG | 0.627133 | 5.4:-9685749 | MS.gene015216:CDS |
| ATGACAACACCAGCCCAAAG+AGG | 0.629953 | 5.4:+9687536 | None:intergenic |
| AATTGAGAGCTTCTTGAACG+CGG | 0.634426 | 5.4:+9686002 | None:intergenic |
| AAGAAACTCTGGTTATTCAG+TGG | 0.635217 | 5.4:-9687875 | MS.gene015216:CDS |
| ACTGAAATAGCAAATAGGAT+CGG | 0.636009 | 5.4:-9685890 | MS.gene015216:CDS |
| TTATGTGGGCTACGGCTATG+GGG | 0.641019 | 5.4:-9687754 | MS.gene015216:CDS |
| AAAGGAGACAACTAGCGCAA+TGG | 0.641305 | 5.4:+9685961 | None:intergenic |
| TTCCCAATCCTGTATATATG+GGG | 0.642639 | 5.4:-9685818 | MS.gene015216:CDS |
| TACCTTCAGGAGAAGTATGG+AGG | 0.648168 | 5.4:-9685848 | MS.gene015216:CDS |
| TTGCCAAGGTGAAAACGTAA+CGG | 0.654921 | 5.4:+9684513 | None:intergenic |
| AGTTTCTTCCATGAAAACGG+TGG | 0.655081 | 5.4:+9687890 | None:intergenic |
| GAATGCAAGAATACATTGTG+AGG | 0.660682 | 5.4:+9686067 | None:intergenic |
| CAAGGTTAGGTGTTGCTACG+GGG | 0.666495 | 5.4:-9687709 | MS.gene015216:CDS |
| TTTGGTGAAGCAAAGCCAGA+TGG | 0.673749 | 5.4:-9686308 | MS.gene015216:CDS |
| GGCTGCTCAACTCTCCGTGG+TGG | 0.674172 | 5.4:+9684465 | None:intergenic |
| TGTGGCTGCTCAACTCTCCG+TGG | 0.704473 | 5.4:+9684462 | None:intergenic |
| ATCAAAGACAGTTACCACCA+CGG | 0.705378 | 5.4:-9684479 | MS.gene015216:CDS |
| TGTTGTGTGTGTAATAACAG+CGG | 0.786619 | 5.4:-9684572 | MS.gene015216:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GACAAATATATTAATAATAA+AGG | + | chr5.4:9686562-9686581 | None:intergenic | 10.0% |
| !!! | AAATTATCTTATTATTGTTT+TGG | - | chr5.4:9685259-9685278 | MS.gene015216:intron | 10.0% |
| !!! | ATTTGAAATTCAAATTAATA+TGG | + | chr5.4:9685804-9685823 | None:intergenic | 10.0% |
| !!! | TTAAATATTTAACTTTTATG+TGG | - | chr5.4:9686060-9686079 | MS.gene015216:CDS | 10.0% |
| !!! | TGTTAATTTTCATTTAAAGT+AGG | - | chr5.4:9685057-9685076 | MS.gene015216:intron | 15.0% |
| !!! | TTTAGTTTCTTTTTTTTGTT+TGG | - | chr5.4:9685130-9685149 | MS.gene015216:intron | 15.0% |
| !! | TTGATAAAAATATTAACGAG+GGG | + | chr5.4:9687677-9687696 | None:intergenic | 20.0% |
| !! | TTTCTTGATATTATTACAGT+GGG | - | chr5.4:9685290-9685309 | MS.gene015216:intron | 20.0% |
| !!! | GTTGATAAAAATATTAACGA+GGG | + | chr5.4:9687678-9687697 | None:intergenic | 20.0% |
| !!! | TAAATTTCAGTTGCTTTAAA+TGG | - | chr5.4:9685005-9685024 | MS.gene015216:intron | 20.0% |
| !!! | TCTGAAATTGTGTTTATAAA+TGG | + | chr5.4:9687206-9687225 | None:intergenic | 20.0% |
| !!! | TCTTATTATTGTTTTGGAAT+TGG | - | chr5.4:9685265-9685284 | MS.gene015216:intron | 20.0% |
| !!! | TGAATTTGAAGTTGAAAAAA+TGG | - | chr5.4:9686784-9686803 | MS.gene015216:intron | 20.0% |
| !!! | TTTTCTTGATATTATTACAG+TGG | - | chr5.4:9685289-9685308 | MS.gene015216:intron | 20.0% |
| ! | ACTTATATTTGATTCTTCAG+AGG | - | chr5.4:9686860-9686879 | MS.gene015216:intron | 25.0% |
| ! | AGAAGATACTTCAAAATAAG+TGG | + | chr5.4:9685215-9685234 | None:intergenic | 25.0% |
| ! | ATTGACATATTCTTACCAAA+GGG | - | chr5.4:9687618-9687637 | MS.gene015216:CDS | 25.0% |
| ! | CATTATTAAGTCAATTTCCT+AGG | - | chr5.4:9686285-9686304 | MS.gene015216:intron | 25.0% |
| ! | CTTTCTTAGATTCATTTCTT+TGG | - | chr5.4:9685851-9685870 | MS.gene015216:CDS | 25.0% |
| ! | GAAATTGTGTTTATAAATGG+TGG | + | chr5.4:9687203-9687222 | None:intergenic | 25.0% |
| ! | GAAGATACTTCAAAATAAGT+GGG | + | chr5.4:9685214-9685233 | None:intergenic | 25.0% |
| ! | GACATATATGAATATGCAAA+TGG | + | chr5.4:9687096-9687115 | None:intergenic | 25.0% |
| ! | GTCTCATATTGAATGATATA+AGG | + | chr5.4:9687229-9687248 | None:intergenic | 25.0% |
| ! | GTTTCAAAGGAACAAATAAT+GGG | - | chr5.4:9686966-9686985 | MS.gene015216:intron | 25.0% |
| ! | TGATAAAAATATTAACGAGG+GGG | + | chr5.4:9687676-9687695 | None:intergenic | 25.0% |
| !! | CGTTGATAAAAATATTAACG+AGG | + | chr5.4:9687679-9687698 | None:intergenic | 25.0% |
| !! | TATATGATTCCTTTGCATTT+TGG | - | chr5.4:9687018-9687037 | MS.gene015216:intron | 25.0% |
| !! | TGAAGTATCTTCTTTGATTA+AGG | - | chr5.4:9685222-9685241 | MS.gene015216:intron | 25.0% |
| !!! | AGTTTGATGCTTTGATTTTT+TGG | - | chr5.4:9687760-9687779 | MS.gene015216:CDS | 25.0% |
| !!! | ATAGTGTTTTTTAGTTGTAC+TGG | - | chr5.4:9685315-9685334 | MS.gene015216:intron | 25.0% |
| !!! | CATTAGATGTTTTGAATGAA+TGG | - | chr5.4:9686886-9686905 | MS.gene015216:intron | 25.0% |
| !!! | CGTTAATATTTTTATCAACG+TGG | - | chr5.4:9687679-9687698 | MS.gene015216:CDS | 25.0% |
| AAAAGCAAGACAATTGATCA+TGG | + | chr5.4:9685971-9685990 | None:intergenic | 30.0% | |
| AAGAAAGAGGAAAATGAAAC+TGG | + | chr5.4:9686096-9686115 | None:intergenic | 30.0% | |
| AAGATGGAATAGGTCTATAT+TGG | + | chr5.4:9687493-9687512 | None:intergenic | 30.0% | |
| ACTCGTATATTACTTGATGA+AGG | - | chr5.4:9685679-9685698 | MS.gene015216:CDS | 30.0% | |
| ACTGAAATAGCAAATAGGAT+CGG | - | chr5.4:9686612-9686631 | MS.gene015216:intron | 30.0% | |
| AGAACAACTCTACATTCAAA+AGG | + | chr5.4:9685647-9685666 | None:intergenic | 30.0% | |
| AGATGGAATAGGTCTATATT+GGG | + | chr5.4:9687492-9687511 | None:intergenic | 30.0% | |
| AGCCATTATAGCAATAAGAA+CGG | + | chr5.4:9686156-9686175 | None:intergenic | 30.0% | |
| ATAAGTGCAACTATCATAGT+CGG | + | chr5.4:9686846-9686865 | None:intergenic | 30.0% | |
| ATTCCCAATCCTGTATATAT+GGG | - | chr5.4:9686683-9686702 | MS.gene015216:intron | 30.0% | |
| CATATGCACAAATTGAAGTT+AGG | + | chr5.4:9685567-9685586 | None:intergenic | 30.0% | |
| CATGGATTCATCAATATTTC+TGG | + | chr5.4:9685953-9685972 | None:intergenic | 30.0% | |
| CCACTACCATGTTAAAATTT+GGG | - | chr5.4:9687347-9687366 | MS.gene015216:intron | 30.0% | |
| CTCGTATATTACTTGATGAA+GGG | - | chr5.4:9685680-9685699 | MS.gene015216:CDS | 30.0% | |
| CTGATATTCAAGAGGTTATA+GGG | - | chr5.4:9684904-9684923 | MS.gene015216:intron | 30.0% | |
| GAAGTTGAAAAAATGGATGA+GGG | - | chr5.4:9686791-9686810 | MS.gene015216:intron | 30.0% | |
| GATAATTTCTCTTACCTAAG+TGG | - | chr5.4:9687581-9687600 | MS.gene015216:CDS | 30.0% | |
| GATTGACATATTCTTACCAA+AGG | - | chr5.4:9687617-9687636 | MS.gene015216:CDS | 30.0% | |
| GGTTTCAAAGGAACAAATAA+TGG | - | chr5.4:9686965-9686984 | MS.gene015216:intron | 30.0% | |
| GTTATCCATTGTCAGTTTAT+TGG | - | chr5.4:9687058-9687077 | MS.gene015216:intron | 30.0% | |
| TATTCCCAATCCTGTATATA+TGG | - | chr5.4:9686682-9686701 | MS.gene015216:intron | 30.0% | |
| TCCACTACCATGTTAAAATT+TGG | - | chr5.4:9687346-9687365 | MS.gene015216:intron | 30.0% | |
| TCTGATATTCAAGAGGTTAT+AGG | - | chr5.4:9684903-9684922 | MS.gene015216:intron | 30.0% | |
| TGAAGTTGAAAAAATGGATG+AGG | - | chr5.4:9686790-9686809 | MS.gene015216:intron | 30.0% | |
| TGGTCTGTATTGAAATCATA+AGG | + | chr5.4:9687816-9687835 | None:intergenic | 30.0% | |
| TTAGAACAACAACAAGAAGA+AGG | - | chr5.4:9684492-9684511 | MS.gene015216:CDS | 30.0% | |
| TTCCTCTTTCTTGAGAATTA+TGG | - | chr5.4:9686104-9686123 | MS.gene015216:CDS | 30.0% | |
| TTTGGCATTTAAGAAGCTAT+TGG | - | chr5.4:9685995-9686014 | MS.gene015216:CDS | 30.0% | |
| ! | ACCATGTTAAAATTTGGGTT+CGG | - | chr5.4:9687352-9687371 | MS.gene015216:intron | 30.0% |
| ! | ATCAAGTTTAGAACCTAAAC+TGG | + | chr5.4:9685435-9685454 | None:intergenic | 30.0% |
| ! | ATGGTACTGAAATAGCAAAT+AGG | - | chr5.4:9686607-9686626 | MS.gene015216:intron | 30.0% |
| ! | TCTGATGAGTATAGCATTTT+TGG | - | chr5.4:9684659-9684678 | MS.gene015216:CDS | 30.0% |
| ! | TCTGCAATTATAGCATTTTC+TGG | - | chr5.4:9685099-9685118 | MS.gene015216:intron | 30.0% |
| ! | TTGTCATTACTGCTTTAGAT+TGG | - | chr5.4:9684982-9685001 | MS.gene015216:intron | 30.0% |
| ! | TTTGAAACCAAACAAAGCAA+GGG | + | chr5.4:9686954-9686973 | None:intergenic | 30.0% |
| ! | TTTTGCCTTTGTAGGTATTT+TGG | - | chr5.4:9686350-9686369 | MS.gene015216:CDS | 30.0% |
| !! | ATCTAAGAAAGCACTCTAAA+AGG | + | chr5.4:9685842-9685861 | None:intergenic | 30.0% |
| !! | ATTTTTATCAACGTGGATTG+AGG | - | chr5.4:9687686-9687705 | MS.gene015216:CDS | 30.0% |
| !! | GCTATTAGGATTTTGAGTAA+TGG | - | chr5.4:9684936-9684955 | MS.gene015216:intron | 30.0% |
| !! | GTCTTTAGAGTTTCTTGTTA+TGG | - | chr5.4:9685478-9685497 | MS.gene015216:intron | 30.0% |
| !!! | ACTAAGTTTTAGGTTCCATA+TGG | - | chr5.4:9685404-9685423 | MS.gene015216:intron | 30.0% |
| !!! | ACTGAACCATATGTTTTGAT+AGG | + | chr5.4:9685515-9685534 | None:intergenic | 30.0% |
| !!! | ATTGTCTTGCTTTTTCGTTT+TGG | - | chr5.4:9685977-9685996 | MS.gene015216:CDS | 30.0% |
| !!! | CTGAACCATATGTTTTGATA+GGG | + | chr5.4:9685514-9685533 | None:intergenic | 30.0% |
| !!! | TAACCGTTTTTAAGTTTGCA+GGG | + | chr5.4:9685163-9685182 | None:intergenic | 30.0% |
| !!! | TGAACCATATGTTTTGATAG+GGG | + | chr5.4:9685513-9685532 | None:intergenic | 30.0% |
| AAAAATATTAACGAGGGGGT+AGG | + | chr5.4:9687672-9687691 | None:intergenic | 35.0% | |
| AAAATATTAACGAGGGGGTA+GGG | + | chr5.4:9687671-9687690 | None:intergenic | 35.0% | |
| AAGAAACTCTGGTTATTCAG+TGG | - | chr5.4:9684627-9684646 | MS.gene015216:CDS | 35.0% | |
| ACATCCCCTATCAAAACATA+TGG | - | chr5.4:9685506-9685525 | MS.gene015216:intron | 35.0% | |
| ACTATTACTGGTACATATGC+TGG | - | chr5.4:9686738-9686757 | MS.gene015216:intron | 35.0% | |
| AGAACTATACAACAAGCTGT+TGG | - | chr5.4:9686390-9686409 | MS.gene015216:CDS | 35.0% | |
| AGATGTCATGTAAACCTGTT+GGG | - | chr5.4:9685887-9685906 | MS.gene015216:CDS | 35.0% | |
| AGGAAAATGAAACTGGAACA+AGG | + | chr5.4:9686089-9686108 | None:intergenic | 35.0% | |
| AGGAACCAAAATACCTACAA+AGG | + | chr5.4:9686358-9686377 | None:intergenic | 35.0% | |
| ATACCCCATATATACAGGAT+TGG | + | chr5.4:9686690-9686709 | None:intergenic | 35.0% | |
| ATATGCTGGACAATTCATCA+TGG | - | chr5.4:9686752-9686771 | MS.gene015216:intron | 35.0% | |
| ATCCTGTATATATGGGGTAT+TGG | - | chr5.4:9686690-9686709 | MS.gene015216:intron | 35.0% | |
| ATGTAAAGAGTCGTAACGTT+TGG | - | chr5.4:9687127-9687146 | MS.gene015216:intron | 35.0% | |
| CAAAGGAATCATATACCTTG+AGG | + | chr5.4:9687013-9687032 | None:intergenic | 35.0% | |
| CACCATAATTCTCAAGAAAG+AGG | + | chr5.4:9686109-9686128 | None:intergenic | 35.0% | |
| CAGAGTTTCTTCCATGAAAA+CGG | + | chr5.4:9684618-9684637 | None:intergenic | 35.0% | |
| CATGTCCAATAAACTGACAA+TGG | + | chr5.4:9687066-9687085 | None:intergenic | 35.0% | |
| CTAAACTTGATGTAAGAGGA+GGG | - | chr5.4:9685444-9685463 | MS.gene015216:intron | 35.0% | |
| GAATGCAAGAATACATTGTG+AGG | + | chr5.4:9686438-9686457 | None:intergenic | 35.0% | |
| GAATTATGGTGTGAGGAAAT+TGG | - | chr5.4:9686118-9686137 | MS.gene015216:CDS | 35.0% | |
| GTCCCACGTTTGATTAAATA+AGG | + | chr5.4:9687441-9687460 | None:intergenic | 35.0% | |
| TAAGTGCAACTATCATAGTC+GGG | + | chr5.4:9686845-9686864 | None:intergenic | 35.0% | |
| TACCCCATATATACAGGATT+GGG | + | chr5.4:9686689-9686708 | None:intergenic | 35.0% | |
| TAGAGATGAGTATCCTACTT+GGG | - | chr5.4:9684836-9684855 | MS.gene015216:intron | 35.0% | |
| TAGATGTCATGTAAACCTGT+TGG | - | chr5.4:9685886-9685905 | MS.gene015216:CDS | 35.0% | |
| TATGCTGGACAATTCATCAT+GGG | - | chr5.4:9686753-9686772 | MS.gene015216:intron | 35.0% | |
| TCTAAACTTGATGTAAGAGG+AGG | - | chr5.4:9685443-9685462 | MS.gene015216:intron | 35.0% | |
| TGACCCTGCAAACTTAAAAA+CGG | - | chr5.4:9685157-9685176 | MS.gene015216:intron | 35.0% | |
| TGAGAAGAGAAGACAACAAA+TGG | - | chr5.4:9685585-9685604 | MS.gene015216:CDS | 35.0% | |
| TGCCGTTCTTATTGCTATAA+TGG | - | chr5.4:9686151-9686170 | MS.gene015216:intron | 35.0% | |
| TGTAAAGAGTCGTAACGTTT+GGG | - | chr5.4:9687128-9687147 | MS.gene015216:intron | 35.0% | |
| TGTTGTGTGTGTAATAACAG+CGG | - | chr5.4:9687930-9687949 | MS.gene015216:CDS | 35.0% | |
| TTCCCAATCCTGTATATATG+GGG | - | chr5.4:9686684-9686703 | MS.gene015216:intron | 35.0% | |
| TTCTTGAGAATTATGGTGTG+AGG | - | chr5.4:9686111-9686130 | MS.gene015216:CDS | 35.0% | |
| TTTCAATACAGACCATTTCC+TGG | - | chr5.4:9687821-9687840 | MS.gene015216:CDS | 35.0% | |
| ! | AGTTTAGAACCTAAACTGGT+AGG | + | chr5.4:9685431-9685450 | None:intergenic | 35.0% |
| ! | ATGACTGAAGTTGCTTTGAT+TGG | - | chr5.4:9684879-9684898 | MS.gene015216:intron | 35.0% |
| ! | ATTGATTCCCTTGCTTTGTT+TGG | - | chr5.4:9686944-9686963 | MS.gene015216:intron | 35.0% |
| ! | CTAAAAGGTGTGTTTCTTCA+TGG | + | chr5.4:9685827-9685846 | None:intergenic | 35.0% |
| ! | CTTTTCAGATGAATCGTAAG+CGG | + | chr5.4:9684526-9684545 | None:intergenic | 35.0% |
| ! | GATAAATGGCTATCTTTTGC+TGG | - | chr5.4:9687867-9687886 | MS.gene015216:CDS | 35.0% |
| ! | GTTTAGAACCTAAACTGGTA+GGG | + | chr5.4:9685430-9685449 | None:intergenic | 35.0% |
| ! | TCCTGTATATATGGGGTATT+GGG | - | chr5.4:9686691-9686710 | MS.gene015216:intron | 35.0% |
| ! | TGCTTTCATTTTGCCTTTGT+AGG | - | chr5.4:9686342-9686361 | MS.gene015216:CDS | 35.0% |
| !! | AACAGCTTGTTGTATAGTTC+TGG | + | chr5.4:9686391-9686410 | None:intergenic | 35.0% |
| !! | AGTATAGCATTTTTGGATCC+TGG | - | chr5.4:9684666-9684685 | MS.gene015216:CDS | 35.0% |
| !! | ATAATGGGCACTTTCAAGAT+TGG | - | chr5.4:9686981-9687000 | MS.gene015216:intron | 35.0% |
| !! | ATAGTTCTGGAGCTAAGTTT+AGG | + | chr5.4:9686378-9686397 | None:intergenic | 35.0% |
| !! | ATTTTTGGATCCTGGAAACT+TGG | - | chr5.4:9684674-9684693 | MS.gene015216:intron | 35.0% |
| !! | CCCAAATTTTAACATGGTAG+TGG | + | chr5.4:9687350-9687369 | None:intergenic | 35.0% |
| !! | CTTGCTTTGTTTGGTTTCAA+AGG | - | chr5.4:9686953-9686972 | MS.gene015216:intron | 35.0% |
| !! | CTTTGAAACCAAACAAAGCA+AGG | + | chr5.4:9686955-9686974 | None:intergenic | 35.0% |
| !! | GATTGGTTCTGATATTCAAG+AGG | - | chr5.4:9684896-9684915 | MS.gene015216:intron | 35.0% |
| !! | GGCCTTATTTAATCAAACGT+GGG | - | chr5.4:9687436-9687455 | MS.gene015216:intron | 35.0% |
| !! | GGTTCTAAACTTGATGTAAG+AGG | - | chr5.4:9685440-9685459 | MS.gene015216:intron | 35.0% |
| !! | TCTTGTTGTTGTTCTAACAG+AGG | + | chr5.4:9684489-9684508 | None:intergenic | 35.0% |
| !!! | CTTACAAGCCACTTTTGTAA+GGG | + | chr5.4:9687169-9687188 | None:intergenic | 35.0% |
| !!! | GTAACCGTTTTTAAGTTTGC+AGG | + | chr5.4:9685164-9685183 | None:intergenic | 35.0% |
| AATGTCCACCACTCACATTT+CGG | - | chr5.4:9687414-9687433 | MS.gene015216:intron | 40.0% | |
| AATTGAGAGCTTCTTGAACG+CGG | + | chr5.4:9686503-9686522 | None:intergenic | 40.0% | |
| ACAAGAACATCAACACCATC+TGG | + | chr5.4:9686212-9686231 | None:intergenic | 40.0% | |
| ACCCAATACCCCATATATAC+AGG | + | chr5.4:9686695-9686714 | None:intergenic | 40.0% | |
| AGCAAGGGAATCAATGCAAA+AGG | + | chr5.4:9686939-9686958 | None:intergenic | 40.0% | |
| AGCCTATGATGTCAGCTTAT+TGG | - | chr5.4:9685188-9685207 | MS.gene015216:intron | 40.0% | |
| AGTTTCTTCCATGAAAACGG+TGG | + | chr5.4:9684615-9684634 | None:intergenic | 40.0% | |
| AGTTTGGTAGGGGTTGAATT+GGG | + | chr5.4:9687378-9687397 | None:intergenic | 40.0% | |
| ATCAAAGACAGTTACCACCA+CGG | - | chr5.4:9688023-9688042 | MS.gene015216:CDS | 40.0% | |
| ATCCAAGATCCATTGGAGAT+TGG | + | chr5.4:9687322-9687341 | None:intergenic | 40.0% | |
| ATTCTGCTCTTGTTCAATCC+AGG | - | chr5.4:9686454-9686473 | MS.gene015216:intron | 40.0% | |
| CATAAGGATATCATGAGCTG+TGG | + | chr5.4:9687800-9687819 | None:intergenic | 40.0% | |
| CATGTAAACCTGTTGGGATT+GGG | - | chr5.4:9685893-9685912 | MS.gene015216:CDS | 40.0% | |
| CGCTTACGATTCATCTGAAA+AGG | - | chr5.4:9684524-9684543 | MS.gene015216:CDS | 40.0% | |
| CTCTCATTTGCATGGATGTT+TGG | - | chr5.4:9686176-9686195 | MS.gene015216:intron | 40.0% | |
| CTTGTTGAACTTAGCCACTT+AGG | + | chr5.4:9687598-9687617 | None:intergenic | 40.0% | |
| GATCGAGTTAATCTTTGCCA+AGG | + | chr5.4:9688006-9688025 | None:intergenic | 40.0% | |
| GCAAGGGAATCAATGCAAAA+GGG | + | chr5.4:9686938-9686957 | None:intergenic | 40.0% | |
| GCAGTTCAACCAAAATGCAA+AGG | + | chr5.4:9687030-9687049 | None:intergenic | 40.0% | |
| GCTATACTCATCAGAAAACC+TGG | + | chr5.4:9684654-9684673 | None:intergenic | 40.0% | |
| GCTGTTATGGCTTCTTATGT+GGG | - | chr5.4:9684734-9684753 | MS.gene015216:intron | 40.0% | |
| GGAATCTATCCAAGATCCAT+TGG | + | chr5.4:9687329-9687348 | None:intergenic | 40.0% | |
| GTAGAGATGAGTATCCTACT+TGG | - | chr5.4:9684835-9684854 | MS.gene015216:intron | 40.0% | |
| GTTGTTCTAACAGAGGTTGT+TGG | + | chr5.4:9684482-9684501 | None:intergenic | 40.0% | |
| TAATGGCTCTCTCATTTGCA+TGG | - | chr5.4:9686168-9686187 | MS.gene015216:intron | 40.0% | |
| TAGCTCAACCCTTACAAAAG+TGG | - | chr5.4:9687158-9687177 | MS.gene015216:intron | 40.0% | |
| TCATGTAAACCTGTTGGGAT+TGG | - | chr5.4:9685892-9685911 | MS.gene015216:CDS | 40.0% | |
| TCTGAAAAGGTTGTCGTTGT+TGG | - | chr5.4:9684537-9684556 | MS.gene015216:CDS | 40.0% | |
| TTACCCGAATAGCTTGATAG+CGG | - | chr5.4:9687291-9687310 | MS.gene015216:intron | 40.0% | |
| TTCAATCTGGTGCAATTGCT+GGG | - | chr5.4:9684706-9684725 | MS.gene015216:intron | 40.0% | |
| TTCGTAAGCTTCTTCTTCGT+CGG | + | chr5.4:9684565-9684584 | None:intergenic | 40.0% | |
| TTGCCAAGGTGAAAACGTAA+CGG | + | chr5.4:9687992-9688011 | None:intergenic | 40.0% | |
| TTGGAAGGAGATCTTCAATC+TGG | - | chr5.4:9684693-9684712 | MS.gene015216:intron | 40.0% | |
| ! | ACGTAACGGAGCTTGAAATA+AGG | + | chr5.4:9687978-9687997 | None:intergenic | 40.0% |
| ! | ACTTTTGTAAGGGTTGAGCT+AGG | + | chr5.4:9687159-9687178 | None:intergenic | 40.0% |
| ! | CCTTACAAAAGTGGCTTGTA+AGG | - | chr5.4:9687167-9687186 | MS.gene015216:intron | 40.0% |
| ! | CGTTTTCATGGAAGAAACTC+TGG | - | chr5.4:9684616-9684635 | MS.gene015216:CDS | 40.0% |
| ! | GCTCTGGTGATAGTGATAAA+TGG | - | chr5.4:9687853-9687872 | MS.gene015216:CDS | 40.0% |
| ! | GTCACAACTGTGTTTGCTAA+GGG | - | chr5.4:9686579-9686598 | MS.gene015216:intron | 40.0% |
| ! | GTGTCGAGACACTAAGTTTT+AGG | - | chr5.4:9685394-9685413 | MS.gene015216:intron | 40.0% |
| ! | TACGAATTCCACCGTTTTCA+TGG | - | chr5.4:9684604-9684623 | MS.gene015216:CDS | 40.0% |
| ! | TGATTCAGCTTTTGTCAGCA+AGG | - | chr5.4:9684775-9684794 | MS.gene015216:intron | 40.0% |
| ! | TGTCACAACTGTGTTTGCTA+AGG | - | chr5.4:9686578-9686597 | MS.gene015216:intron | 40.0% |
| !! | GATGGTGTTGATGTTCTTGT+TGG | - | chr5.4:9686212-9686231 | MS.gene015216:intron | 40.0% |
| !! | GCCGAACCCAAATTTTAACA+TGG | + | chr5.4:9687356-9687375 | None:intergenic | 40.0% |
| !! | GGGCCTTATTTAATCAAACG+TGG | - | chr5.4:9687435-9687454 | MS.gene015216:intron | 40.0% |
| !! | GTGTTTGCTAAGGGCTTTTA+TGG | - | chr5.4:9686588-9686607 | MS.gene015216:intron | 40.0% |
| !! | TAATGGCCTTGTTCCTCTTT+GGG | - | chr5.4:9684953-9684972 | MS.gene015216:intron | 40.0% |
| !! | TACCAAAGGGACTAGTTTCA+AGG | - | chr5.4:9687631-9687650 | MS.gene015216:CDS | 40.0% |
| !! | TAGGGAGTGCTATTGCTATT+AGG | - | chr5.4:9684922-9684941 | MS.gene015216:intron | 40.0% |
| !!! | CCTTACAAGCCACTTTTGTA+AGG | + | chr5.4:9687170-9687189 | None:intergenic | 40.0% |
| !!! | TTCTTTTCCTCTGAAGTGAG+TGG | - | chr5.4:9687892-9687911 | MS.gene015216:CDS | 40.0% |
| AAAGGAGACAACTAGCGCAA+TGG | + | chr5.4:9686544-9686563 | None:intergenic | 45.0% | |
| AATAAGGCCCGAAATGTGAG+TGG | + | chr5.4:9687425-9687444 | None:intergenic | 45.0% | |
| ACACCTCTCATGCTTAGTGT+TGG | - | chr5.4:9687256-9687275 | MS.gene015216:intron | 45.0% | |
| ACCTTACAAGCCAGTTTGGT+AGG | + | chr5.4:9687390-9687409 | None:intergenic | 45.0% | |
| AGAACAATCCTTGCCCAAGT+AGG | + | chr5.4:9684852-9684871 | None:intergenic | 45.0% | |
| AGATCTCCTTCCAAGTTTCC+AGG | + | chr5.4:9684687-9684706 | None:intergenic | 45.0% | |
| ATCAAGCCTGAGAAGCAAGA+TGG | + | chr5.4:9687509-9687528 | None:intergenic | 45.0% | |
| ATGAGTATCCTACTTGGGCA+AGG | - | chr5.4:9684841-9684860 | MS.gene015216:intron | 45.0% | |
| ATGTCCACCACTCACATTTC+GGG | - | chr5.4:9687415-9687434 | MS.gene015216:intron | 45.0% | |
| CAAACGTGGGACTCTTAACT+AGG | - | chr5.4:9687449-9687468 | MS.gene015216:intron | 45.0% | |
| CAACAAGCTGTTGGAGTTGT+TGG | - | chr5.4:9686399-9686418 | MS.gene015216:CDS | 45.0% | |
| CAATTCAACCCCTACCAAAC+TGG | - | chr5.4:9687377-9687396 | MS.gene015216:intron | 45.0% | |
| CAGTACCTTCAGGAGAAGTA+TGG | - | chr5.4:9686651-9686670 | MS.gene015216:intron | 45.0% | |
| CAGTTTGGTAGGGGTTGAAT+TGG | + | chr5.4:9687379-9687398 | None:intergenic | 45.0% | |
| CCTATTCCATCTTGCTTCTC+AGG | - | chr5.4:9687500-9687519 | MS.gene015216:intron | 45.0% | |
| CCTGAGAAGCAAGATGGAAT+AGG | + | chr5.4:9687503-9687522 | None:intergenic | 45.0% | |
| CCTTACAAGCCAGTTTGGTA+GGG | + | chr5.4:9687389-9687408 | None:intergenic | 45.0% | |
| CGCTGTTATGGCTTCTTATG+TGG | - | chr5.4:9684733-9684752 | MS.gene015216:intron | 45.0% | |
| CTTACAAGCCAGTTTGGTAG+GGG | + | chr5.4:9687388-9687407 | None:intergenic | 45.0% | |
| CTTCAATCTGGTGCAATTGC+TGG | - | chr5.4:9684705-9684724 | MS.gene015216:intron | 45.0% | |
| CTTGGGCAAGGATTGTTCTT+TGG | - | chr5.4:9684853-9684872 | MS.gene015216:intron | 45.0% | |
| GGCCAATAAGCTGACATCAT+AGG | + | chr5.4:9685193-9685212 | None:intergenic | 45.0% | |
| GGGGTAGGGAACATAAAAAG+AGG | + | chr5.4:9687657-9687676 | None:intergenic | 45.0% | |
| GGTCAGAGTAGCACTATTAC+TGG | - | chr5.4:9686726-9686745 | MS.gene015216:intron | 45.0% | |
| GTATTCTTCCCAATCCCAAC+AGG | + | chr5.4:9685904-9685923 | None:intergenic | 45.0% | |
| GTCCAATCTCCAATGGATCT+TGG | - | chr5.4:9687317-9687336 | MS.gene015216:intron | 45.0% | |
| TATGAAGCATGAGCACACCT+AGG | + | chr5.4:9686305-9686324 | None:intergenic | 45.0% | |
| TGTCCAACACTAAGCATGAG+AGG | + | chr5.4:9687262-9687281 | None:intergenic | 45.0% | |
| TTGCTGGGTATTCGCTGTTA+TGG | - | chr5.4:9684721-9684740 | MS.gene015216:intron | 45.0% | |
| TTGGATCCTGGAAACTTGGA+AGG | - | chr5.4:9684678-9684697 | MS.gene015216:intron | 45.0% | |
| TTTGGTGAAGCAAAGCCAGA+TGG | - | chr5.4:9686194-9686213 | MS.gene015216:intron | 45.0% | |
| ! | AGGATCGGTCTTGTAAATGC+AGG | - | chr5.4:9686627-9686646 | MS.gene015216:intron | 45.0% |
| ! | ATGGCTTCTTATGTGGGCTA+CGG | - | chr5.4:9684740-9684759 | MS.gene015216:intron | 45.0% |
| ! | CAGCTTTTGTCAGCAAGGTT+AGG | - | chr5.4:9684780-9684799 | MS.gene015216:intron | 45.0% |
| ! | CAGGTTGACCCCAAAAAGAA+AGG | - | chr5.4:9686477-9686496 | MS.gene015216:intron | 45.0% |
| ! | CATGCTTAGTGTTGGACATC+TGG | - | chr5.4:9687264-9687283 | MS.gene015216:intron | 45.0% |
| ! | GGATCGGTCTTGTAAATGCA+GGG | - | chr5.4:9686628-9686647 | MS.gene015216:intron | 45.0% |
| ! | TACCCGAATAGCTTGATAGC+GGG | - | chr5.4:9687292-9687311 | MS.gene015216:intron | 45.0% |
| ! | TACCTTCAGGAGAAGTATGG+AGG | - | chr5.4:9686654-9686673 | MS.gene015216:intron | 45.0% |
| ! | TGAACGCGGCCTTTCTTTTT+GGG | + | chr5.4:9686489-9686508 | None:intergenic | 45.0% |
| ! | TTGAACGCGGCCTTTCTTTT+TGG | + | chr5.4:9686490-9686509 | None:intergenic | 45.0% |
| !! | AGCAAGGTTAGGTGTTGCTA+CGG | - | chr5.4:9684791-9684810 | MS.gene015216:intron | 45.0% |
| !! | GTAATGGCCTTGTTCCTCTT+TGG | - | chr5.4:9684952-9684971 | MS.gene015216:intron | 45.0% |
| !! | AAATTTAATCATTATTAATT+AGG | - | chr5.4:9687721-9687740 | MS.gene015216:CDS | 5.0% |
| AAATGCAGGGCAGTACCTTC+AGG | - | chr5.4:9686641-9686660 | MS.gene015216:intron | 50.0% | |
| AGAAGCTTACGAAGCCGAAG+TGG | - | chr5.4:9684572-9684591 | MS.gene015216:CDS | 50.0% | |
| ATGACAACACCAGCCCAAAG+AGG | + | chr5.4:9684969-9684988 | None:intergenic | 50.0% | |
| CACCCGCTATCAAGCTATTC+GGG | + | chr5.4:9687297-9687316 | None:intergenic | 50.0% | |
| CCACCCGCTATCAAGCTATT+CGG | + | chr5.4:9687298-9687317 | None:intergenic | 50.0% | |
| CCATATGGCCCTACCAGTTT+AGG | - | chr5.4:9685419-9685438 | MS.gene015216:intron | 50.0% | |
| CCTAAACTGGTAGGGCCATA+TGG | + | chr5.4:9685422-9685441 | None:intergenic | 50.0% | |
| CCTCACCTTACAAGCCAGTT+TGG | + | chr5.4:9687394-9687413 | None:intergenic | 50.0% | |
| CTCTGGTTATTCAGTGGACC+AGG | - | chr5.4:9684633-9684652 | MS.gene015216:CDS | 50.0% | |
| GCTGGACAATTCATCATGGG+TGG | - | chr5.4:9686756-9686775 | MS.gene015216:intron | 50.0% | |
| GGCCTTGAAACTAGTCCCTT+TGG | + | chr5.4:9687636-9687655 | None:intergenic | 50.0% | |
| TCGTACTCCAGAGTCCACTT+CGG | + | chr5.4:9684589-9684608 | None:intergenic | 50.0% | |
| TGCTCTTGTTCAATCCAGGC+AGG | - | chr5.4:9686458-9686477 | MS.gene015216:intron | 50.0% | |
| TGTTGCTACGGGGAGACATT+TGG | - | chr5.4:9684803-9684822 | MS.gene015216:intron | 50.0% | |
| ! | ACAGACCATTTCCTGGCTTG+TGG | - | chr5.4:9687828-9687847 | MS.gene015216:CDS | 50.0% |
| ! | CTTATGTGGGCTACGGCTAT+GGG | - | chr5.4:9684747-9684766 | MS.gene015216:intron | 50.0% |
| ! | CTTCAGGAGAAGTATGGAGG+CGG | - | chr5.4:9686657-9686676 | MS.gene015216:intron | 50.0% |
| ! | GAACGCGGCCTTTCTTTTTG+GGG | + | chr5.4:9686488-9686507 | None:intergenic | 50.0% |
| ! | GCTCCGTTACGTTTTCACCT+TGG | - | chr5.4:9687986-9688005 | MS.gene015216:CDS | 50.0% |
| ! | GGTATTGGGTTACTAGCAGC+TGG | - | chr5.4:9686705-9686724 | MS.gene015216:intron | 50.0% |
| ! | TCTTATGTGGGCTACGGCTA+TGG | - | chr5.4:9684746-9684765 | MS.gene015216:intron | 50.0% |
| ! | TTATGTGGGCTACGGCTATG+GGG | - | chr5.4:9684748-9684767 | MS.gene015216:intron | 50.0% |
| !! | CAAGATTGGCTCTGTCCTCA+AGG | - | chr5.4:9686995-9687014 | MS.gene015216:intron | 50.0% |
| !! | CAAGGTTAGGTGTTGCTACG+GGG | - | chr5.4:9684793-9684812 | MS.gene015216:intron | 50.0% |
| !! | CCAAACTGGCTTGTAAGGTG+AGG | - | chr5.4:9687391-9687410 | MS.gene015216:intron | 50.0% |
| !! | CCCTACCAAACTGGCTTGTA+AGG | - | chr5.4:9687386-9687405 | MS.gene015216:intron | 50.0% |
| !! | GCAAGGTTAGGTGTTGCTAC+GGG | - | chr5.4:9684792-9684811 | MS.gene015216:intron | 50.0% |
| !! | GGATGAGGGCGTTGATTACT+CGG | - | chr5.4:9686805-9686824 | MS.gene015216:intron | 50.0% |
| !! | TAGCGCAATGGTGGACTCTA+TGG | + | chr5.4:9686532-9686551 | None:intergenic | 50.0% |
| AAGGCCCGAAATGTGAGTGG+TGG | + | chr5.4:9687422-9687441 | None:intergenic | 55.0% | |
| AGCAGCCACAAGCCAGGAAA+TGG | + | chr5.4:9687836-9687855 | None:intergenic | 55.0% | |
| CACCAGCCCAAAGAGGAACA+AGG | + | chr5.4:9684962-9684981 | None:intergenic | 55.0% | |
| CACTGCTCCACTCACTTCAG+AGG | + | chr5.4:9687902-9687921 | None:intergenic | 55.0% | |
| CGCCTCCATACTTCTCCTGA+AGG | + | chr5.4:9686659-9686678 | None:intergenic | 55.0% | |
| GGAGACAACTAGCGCAATGG+TGG | + | chr5.4:9686541-9686560 | None:intergenic | 55.0% | |
| ! | TACGAAGCCGAAGTGGACTC+TGG | - | chr5.4:9684579-9684598 | MS.gene015216:CDS | 55.0% |
| !! | CCGAATAGCTTGATAGCGGG+TGG | - | chr5.4:9687295-9687314 | MS.gene015216:intron | 55.0% |
| !!! | CTTTTTGGGGTCAACCTGCC+TGG | + | chr5.4:9686475-9686494 | None:intergenic | 55.0% |
| GCGGGTGGTCCAATCTCCAA+TGG | - | chr5.4:9687310-9687329 | MS.gene015216:intron | 60.0% | |
| ! | TTCCTGGCTTGTGGCTGCTC+TGG | - | chr5.4:9687837-9687856 | MS.gene015216:CDS | 60.0% |
| !! | GGCCTTGTTCCTCTTTGGGC+TGG | - | chr5.4:9684957-9684976 | MS.gene015216:intron | 60.0% |
| CACCAGAGCAGCCACAAGCC+AGG | + | chr5.4:9687842-9687861 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 9684471 | 9688053 | 9684471 | ID=MS.gene015216 |
| chr5.4 | mRNA | 9684471 | 9688053 | 9684471 | ID=MS.gene015216.t1;Parent=MS.gene015216 |
| chr5.4 | exon | 9687521 | 9688053 | 9687521 | ID=MS.gene015216.t1.exon1;Parent=MS.gene015216.t1 |
| chr5.4 | CDS | 9687521 | 9688053 | 9687521 | ID=cds.MS.gene015216.t1;Parent=MS.gene015216.t1 |
| chr5.4 | exon | 9686291 | 9686427 | 9686291 | ID=MS.gene015216.t1.exon2;Parent=MS.gene015216.t1 |
| chr5.4 | CDS | 9686291 | 9686427 | 9686291 | ID=cds.MS.gene015216.t1;Parent=MS.gene015216.t1 |
| chr5.4 | exon | 9685508 | 9686160 | 9685508 | ID=MS.gene015216.t1.exon3;Parent=MS.gene015216.t1 |
| chr5.4 | CDS | 9685508 | 9686160 | 9685508 | ID=cds.MS.gene015216.t1;Parent=MS.gene015216.t1 |
| chr5.4 | exon | 9684471 | 9684692 | 9684471 | ID=MS.gene015216.t1.exon4;Parent=MS.gene015216.t1 |
| chr5.4 | CDS | 9684471 | 9684692 | 9684471 | ID=cds.MS.gene015216.t1;Parent=MS.gene015216.t1 |
| Gene Sequence |
| Protein sequence |
